ID: hsa-mir-6742
GENE: TRIM11(1)
chr1:228584699-228584893-


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(6)
B-CELL
(2)
BRAIN
(32)
BREAST
(36)
CELL-LINE
(5)
CERVIX
(2)
FIBROBLAST
(5)
HEART
(4)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(39)
SKIN
(1)
XRN.ip

Sense strand
AGTGTGCTGTTTCTCCTCCCCACATAGGACATCAAGGACGCCCTGCGCAGGTACGAACCCAGCCTCTCCTGGAGGGGGGGCAGGAGGGAGTGGGGTGGGACCCAGCTGTTGGCCATGGCGACAACACCTGGGTTGTCCCCTCTAGGGTCCAGGATGTGAAGCTGCAGCCCCCAGAAGTTGTGCCTATGGAGCTGA
......................................................................................((((.((((...(((((((.(((((((....))..))))).))))))).))))))))....................................................
...................................................................................84...........................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189785SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR038859(GSM458542)
MM386. (cell line)
SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
TAX577742(Rovira)
total RNA. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029126(GSM416755)
143B. (cell line)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGT.................................................211266.0084.0051.0019.00-10.0016.00-13.006.0010.003.003.005.008.00-5.003.004.003.00--4.002.005.00-5.004.002.004.002.002.004.00-2.002.003.001.003.001.003.00-2.001.002.002.001.002.001.001.002.001.00-2.001.002.00-1.00-1.00-1.002.002.001.001.00-2.00---1.00-1.001.001.00-------1.00-------1.00--------1.001.001.001.00---1.001.001.00---1.00----1.00--1.001.00--1.001.00---1.001.001.00-1.00-1.00-1.00---1.001.00--
.............................................................................................................................ACCTGGGTTGTCCCCTCTAG..................................................20184.0084.0066.00-3.00------------2.00--5.002.00-1.00----1.00-----------------1.00-----------------------1.00-----------------1.00------------------------------1.00--------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAGT.................................................23130.008.003.0011.00-2.00---2.00--1.004.00--2.001.00-1.00---1.00------------------------1.00--------------------------------------------------------------------------------------------1.00----
............................................................................................................................CACCTGGGTTGTCCCCTCTAGT.................................................22128.0021.004.003.00-1.00---1.00-3.00---7.00--2.00----1.00----2.00-----1.001.00-----------------------------1.00--------------------------------1.00-----------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAG..................................................21121.0021.008.00-3.001.00------1.00--------4.00-----------------------------------1.00----------------------------1.00-------------------------------------1.00----------1.00----------
........................................................................................AGTGGGGTGGGACCCAGCTGTTT....................................................................................23115.003.00-----13.00--------------------------------------------------------------------1.00----------------------------------1.00----------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGA.................................................2118.0084.002.00-------------------1.00-------1.001.00-------------------------------------------------------------------------1.00--------------1.00--1.00----------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAG..................................................2218.008.006.00-1.00-------1.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTTTAG..................................................206.000.006.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGATAG.............................................................................................205.000.001.00---------1.00-----------------------------------------------------1.00-------------------------1.00------------------------1.00----------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAGAAA...............................................2414.0021.00-----------------------4.00------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAGA.................................................2314.008.001.00---------2.00------1.00------------------------------------------------------------------------------------------------------------------------------
..TGTGCTGTTTCTCCTCCCCAC............................................................................................................................................................................2114.004.00--3.00---------------1.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................GAGGGAGTGGGGTGGGCTA.............................................................................................194.000.00--------------------------------------------------2.00----------------1.00----------------------------------------------------------1.00-----------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTA................................................2213.0084.00----------------------------1.001.00-------------------------------------------------1.00----------------------------------------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGT......................................................................................2213.003.00-------------------------------------1.00---------------------1.00-------------------------------1.00----------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCCAG..................................................203.000.00--2.00---------------1.00-----------------------------------------------------------------------------------------------------------------------------
.........................................................................................GTGGGGTGGGACCCAGCTGTTG....................................................................................2213.003.00---------1.00----------1.001.00--------------------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTTG....................................................................................2313.003.00---------3.00--------------------------------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTT.....................................................................................2213.003.00-2.00--------------------------------------------------------1.00-------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCCAGT.................................................223.000.002.00-1.00---------------------------------------------------------------------------------------------------------------------------------------------
...GTGCTGTTTCTCCTCCCACA............................................................................................................................................................................203.000.00--3.00---------------------------------------------------------------------------------------------------------------------------------------------
................................CAAGGACGCCCTGCGCAGGGT..............................................................................................................................................212.000.00------------------------------------------------------------------1.00-------------------------1.00---------------------------------------------------
..TGTGCTGTTTCTCCTCCCCACA...........................................................................................................................................................................2212.002.002.00-----------------------------------------------------------------------------------------------------------------------------------------------
.................................AAGGACGCCCTGCGCAG.................................................................................................................................................1712.002.00----------------------1.00-----------------------------------------------------------------1.00-------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAA................................................2212.0084.00-----------------2.00------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................CCCCAGAAGTTGTGCCTA.........1812.002.00-------------------------------------------------1.00---------------------------1.00------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGC.................................................2112.0084.001.00------------------------------------------------------------------------------------1.00----------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGGTGGT............................................................................................212.000.00----------------------------------------------------------------1.00-----------------1.00-------------------------------------------------------------
......................CATAGGACATCAAGGACGCCCTGCGCAG.................................................................................................................................................2812.002.00---1.00---------------------------------1.00----------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGTAT...............................................................................................182.000.00---------------------------------------------------------------------------1.00------------------------------------1.00-------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTTT...............................................2312.0084.00-----------------------2.00------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGATGTGAAGCTGCAGC...........................1812.002.00------------------------------------------------------2.00-----------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAA..................................................212.000.001.00-----------------------------------------------------------------------------------------------------------1.00-----------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCCAGT.................................................212.000.00--1.00----------------------------1.00----------------------------------------------------------------------------------------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGTTT....................................................................................2412.001.00-----2.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTAT...............................................2312.0084.00--------------------------------------------------------2.00---------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGTAG....................................................................................2311.001.00-----------------------------------------------1.00------------------------------------------------------------------------------------------------
...................................................................................GAGGGAGTGGGGTGGGCTAA............................................................................................201.000.00--------------------------------------------------------------------------------------------------------------1.00---------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTAA...............................................2311.0084.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGATGTGAAGCTGCAGAA..........................1911.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00------------
........................................................................................AGTGGGGTGGGACCCAGCTGCT.....................................................................................221.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
......................CATAGGACATCAAGGACGCCCTGCGC...................................................................................................................................................2611.001.00----------------1.00-------------------------------------------------------------------------------------------------------------------------------
..TGTGCTGTTTCTCCTCCCCAAT...........................................................................................................................................................................221.000.00--------------------------------------------------------------------------------------------------------1.00---------------------------------------
..................................................................................GGAGGGAGTGGGGTGGGCTA.............................................................................................201.000.00-------------------------------------------------------------------------------------------------------------------------------1.00----------------
..........................GGACATCAAGGACGCC.........................................................................................................................................................1611.001.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAAA...............................................2311.0084.00------------------------------------------------------------------------------------------------------1.00-----------------------------------------
.........................................................................................GTGGGGTGGGACCCAGCTGTTGA...................................................................................2311.003.00----------------------------------------------------------1.00-------------------------------------------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCCAGT.................................................231.000.00-------------------------------1.00----------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGTAC...............................................................................................181.000.00----------------------------------------------------------------------------------------------1.00-------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCT....................................................1811.001.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGTGT..............................................................................................191.000.00-----------------------------------------------------------------------------------1.00------------------------------------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGTAT....................................................................................2411.003.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
.....GCTGTTTCTCCTCCCCACA...........................................................................................................................................................................1911.001.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAT................................................2211.0084.00------------------------------------------------------------------------------1.00-----------------------------------------------------------------
..........................................................................................TGGGGTGGGACCCAGCTGTTGGC..................................................................................2311.001.00-----------------------------------------------------------------------------------------------------------------------------1.00------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAT..................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGT......................................................................................2111.001.00------------------------------------------------------------------1.00-----------------------------------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTG.....................................................191.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTGG..................................................221.000.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTGA...............................................2311.0084.00---------------------------------------------------------------------------------------------------------------------------------------1.00--------
........................................................................................AGTGGGGTGGGACCCAGCTGTAT....................................................................................2311.001.00------------------------------------------------------------------------------------------------------------------------------------------1.00-----
.......................................................................................GAGTGGGGTGGGACCCAGCTGTAG....................................................................................2411.003.00-------------------------------1.00----------------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGTT................................................2211.0084.00----------------------------------------------------------------------------1.00-------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTAGAG................................................2211.0084.00----------------------------------------------------------------------1.00-------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCGAG..................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................AGGATGTGAAGCTGCAG............................1711.001.00--------------------------------------------------------------1.00---------------------------------------------------------------------------------
.........................................................................................GTGGGGTGGGACCCAGCTGTCG....................................................................................221.000.00-------------------------------1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................CAGCTGTTGGCCATGGCGACA........................................................................2111.001.00--------------------------------------------------------------------------------1.00---------------------------------------------------------------
...............................................................CTCTCCTGGAGGGGGGGTC.................................................................................................................191.000.00------------------------------------------------------------------------------------------------------------------1.00-----------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCTCTAAA.................................................231.000.00-------------------------1.00----------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGATCG.............................................................................................201.000.00-----------------------------------------------------------------------------------------------------------------1.00------------------------------
.......................................................................................GAGTGGGGTGGGACCCAGCTGTT.....................................................................................2311.001.00---------------------------------------------------------1.00--------------------------------------------------------------------------------------
.........................................................................................GTGGGGTGGGACCCAGCT........................................................................................1811.001.00-----------------------------------------------------------------------------------------------------------------------------------------1.00------
.............................................................................................................................ACCTGGGTTGTCCCCTCTCGT.................................................2111.001.00-----------------------------------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTTTAG..................................................211.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................CAGGATGTGAAGCTGCA.............................1711.001.00----------------------------------------------------1.00-------------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAGA.................................................2211.0021.00---------------------------------------------------------------------------------------------1.00--------------------------------------------------
...........................................................................................................................ACACCTGGGTTGTCCCCCTAG...................................................211.000.00--1.00---------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................CCTGGGTTGTCCCCTCTAGT.................................................201.000.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................GGAGGGAGTGGGGTGGAGGG.............................................................................................201.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................AGGACGCCCTGCGCAGGGCC.............................................................................................................................................201.000.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................ACCTGGGTTGTCCCCTCTATG.................................................211.000.001.00-----------------------------------------------------------------------------------------------------------------------------------------------
.......................ATAGGACATCAAGGACGCCCTGCGCAGGCACG............................................................................................................................................321.000.00---------------------------------------1.00--------------------------------------------------------------------------------------------------------
............................................................................................................................CACCTGGGTTGTCCCCTCTAAG.................................................221.000.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------
........................................................................................AGTGGGGTGGGACCCAGCTGAA.....................................................................................221.000.00-------------------------------------------------------------------------------------------------1.00----------------------------------------------
......................................................................................................CAGCTGTTGGCCATGG.............................................................................1630.330.33-----------------------------------------------------------------------------------------------------------------------------------------------0.33
...............................................................................................................................................................AGCTGCAGCCCCCAGA....................1690.110.11---------------------------------------0.11--------------------------------------------------------------------------------------------------------

Antisense strand
AGTGTGCTGTTTCTCCTCCCCACATAGGACATCAAGGACGCCCTGCGCAGGTACGAACCCAGCCTCTCCTGGAGGGGGGGCAGGAGGGAGTGGGGTGGGACCCAGCTGTTGGCCATGGCGACAACACCTGGGTTGTCCCCTCTAGGGTCCAGGATGTGAAGCTGCAGCCCCCAGAAGTTGTGCCTATGGAGCTGA
......................................................................................((((.((((...(((((((.(((((((....))..))))).))))))).))))))))....................................................
...................................................................................84...........................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189784DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189785SRR189783SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR191586(GSM715696)
197genomic small RNA (size selected RNA from . (breast)
SRR029125(GSM416754)
U2OS. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR029129(GSM416758)
SW480. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR038859(GSM458542)
MM386. (cell line)
SRR191455(GSM715565)
181genomic small RNA (size selected RNA from . (breast)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
TAX577742(Rovira)
total RNA. (breast)
SRR040036(GSM532921)
G243N. (cervix)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR029126(GSM416755)
143B. (cell line)
SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR038860(GSM458543)
MM426. (cell line)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................GAACCCAGCCTCTCCTTTTT......................................................................................................................... 201.000.00---------------------------------------------------------------------------------------1.00--------------------------------------------------------
.......................................................................GAGGGGGGGCAGGAGTCC.......................................................................................................... 181.000.00-----------------------------------------------------------------------------------------------1.00------------------------------------------------
...................................................TACGAACCCAGCCTCTC............................................................................................................................... 171.000.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------
...................................................TACGAACCCAGCCTCTCCC............................................................................................................................. 191.000.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................CCATGGCGACAACA..................................................................... 1430.330.33----------------------------------------------------------------------------------------------------------------------------------------------0.33-
.................................................................................................................CATGGCGACAACA..................................................................... 13100.100.10----------------------------------------------------------------------------------------------------------------------------------------------0.10-