dme-mir-999- Best orthologs

dme-mir-999	chr3R:17623949-17624053 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 17623971-17623992
   star strand at position 17624009-17624030
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:17623934-17624068 -		1	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droSim1	chr3R:17429586-17429720 -	LASTZ	1	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droSec1	super_0:17996302-17996436 -	LASTZ	1	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droYak2	chr3R:18443923-18444058 -	LASTZ	1	AA-----------ATCGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACATCAGCC--ACATCGG
droEre2	scaffold_4820:10463202-10463335 +	LASTZ	1	GATG--------AACGAA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACACCAGCC--ACACCAG
droEug1	scf7180000409490:921819-921951 -	LASTZ	4	CATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCTGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAATAACAATGTATCAA
droBia1	scf7180000302402:6491258-6491371 +	LASTZ	4	A-------------C-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACA---------------
droTak1	scf7180000415711:1522743-1522870 +	LASTZ	4	-ACG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----CAGCAACAA-A----AGTACCAA
droEle1	scf7180000491212:2051752-2051875 -	LASTZ	4	AACG--------AACGA-----------T--AGAAGAAAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGCTTGCCAGCC----AGC----------CCAGCA----
droRho1	scf7180000767859:959-1086 +	LASTZ	4	GATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAC-AATC--GTATC--
droFic1	scf7180000454106:760371-760511 -	LASTZ	4	AGTA------G-AAAGGA----------GAGAGGAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CATCAACAATGGCCCAGCATTAG
droKik1	scf7180000302388:1458252-1458384 +	LASTZ	4	GTCG--------CAG-----------------GAATAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACATGAAGCAAGTGGAGA
droAna3	scaffold_13340:8622498-8622632 -	LASTZ	1	GTTG------CCAAAGGA----------C---CAAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCTCACTATC--
droBip1	scf7180000396708:225011-225151 +	LASTZ	4	GTTGTCGTTGCCAAAGGA----------C---CTAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCCCACTATC--
dp4	chr2:6480711-6480794 -	LASTZ	1	----------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCAA--GCC---------
droPer1	super_0:306015-306135 -	LASTZ	1	GATG------T-GAAGGA--------------GCCCAA-AGGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA---------------
droWil1	scaffold_181130:11672712-11672848 -	LASTZ	1	GACGACG------ACGACGACGCCAACG-ACAGCAGCA-AAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----AAACAACA---------------
droVir3	scaffold_12822:3936742-3936840 -	LASTZ	1	--------------------------------------------G--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCT----AATCAACA---------------
droMoj3	scaffold_6540:17209641-17209764 -	LASTZ	1	ATTA--------AAAGG---------------GCAGTG-A-GTCG--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCC----AAACAACAGCGACC---------
droGri2	scaffold_8129:786-906 -	LASTZ	1	GATA----------AGGA----------C---AAGAGA-CAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCC----AAGCAACAA-A------------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droSim1	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droSec1	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droYak2	AA-----------ATCGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACATCAGCC--ACATCGG
droEre2	GATG--------AACGAA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACACCAGCC--ACACCAG
droEug1	CATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCTGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAATAACAATGTATCAA
droBia1	A-------------C-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACA---------------
droTak1	-ACG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----CAGCAACAA-A----AGTACCAA
droEle1	AACG--------AACGA-----------T--AGAAGAAAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGCTTGCCAGCC----AGC----------CCAGCA----
droRho1	GATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAC-AATC--GTATC--
droFic1	AGTA------G-AAAGGA----------GAGAGGAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CATCAACAATGGCCCAGCATTAG
droKik1	GTCG--------CAG-----------------GAATAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACATGAAGCAAGTGGAGA
droAna3	GTTG------CCAAAGGA----------C---CAAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCTCACTATC--
droBip1	GTTGTCGTTGCCAAAGGA----------C---CTAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCCCACTATC--
dp4	----------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCAA--GCC---------
droPer1	GATG------T-GAAGGA--------------GCCCAA-AGGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA---------------
droWil1	GACGACG------ACGACGACGCCAACG-ACAGCAGCA-AAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----AAACAACA---------------
droVir3	--------------------------------------------G--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCT----AATCAACA---------------
droMoj3	ATTA--------AAAGG---------------GCAGTG-A-GTCG--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCC----AAACAACAGCGACC---------
droGri2	GATA----------AGGA----------C---AAGAGA-CAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCC----AAGCAACAA-A------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	562142.00	1276.00	510817.00	19930.00	30119.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	68992.00	3.00	63787.00	1912.00	3290.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	30749.00	10.00	29571.00	1045.00	123.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCG..........................................	22	1	12607.00	1.00	10906.00	665.00	1035.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	9924.00	9.00	9156.00	361.00	398.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	7244.00	0.00	6635.00	196.00	413.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	6069.00	0.00	5498.00	135.00	436.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	4489.00	0.00	4126.00	80.00	283.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCC..........................................	22	1	3911.00	0.00	3797.00	101.00	13.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	3514.00	0.00	3228.00	76.00	210.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	3347.00	15.00	2957.00	122.00	253.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	3206.00	0.00	2903.00	69.00	234.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	3000.00	0.00	2745.00	74.00	181.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	2071.00	1.00	1965.00	82.00	23.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	1731.00	1.00	1569.00	30.00	131.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	1249.00	2.00	1120.00	40.00	87.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	505.00	0.00	452.50	15.00	37.50
.....................................................................................................TGTTAACTGTAATACTGTGTCC..........................................	22	1	1004.00	0.00	950.00	10.00	44.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	966.00	0.00	858.00	33.00	75.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	899.00	0.00	869.00	17.00	13.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	759.00	0.00	702.00	27.00	30.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCC..........................................	22	1	744.00	0.00	685.00	18.00	41.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCG..........................................	22	1	707.00	0.00	676.00	25.00	6.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	701.00	8.00	538.00	75.00	80.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	688.00	2.00	623.00	27.00	36.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	642.00	1.00	589.00	24.00	28.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	621.00	21.00	531.00	55.00	14.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	565.00	0.00	541.00	19.00	5.00
.......................................................................................................TTAACTGTAAGACTGTGTCC..........................................	20	1	554.00	0.00	503.00	14.00	37.00
.....................................................................................................TGTTAACTGTxATACTGTGTCT..........................................	21	1	501.00	0.00	460.00	16.00	25.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	494.00	0.00	435.00	15.00	44.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	467.00	7.00	429.00	10.00	21.00
......................................................................................................TTTAACTGTAAGACTGTGTCC..........................................	21	1	446.00	0.00	413.00	12.00	21.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	437.00	43.00	294.00	43.00	57.00
.....................................................................................................TGTTAACTGTAACACTGTGTCC..........................................	22	1	416.00	0.00	383.00	8.00	25.00
.....................................................................................................TGTTAACTGTxACACTGTGTCT..........................................	21	1	411.00	0.00	374.00	10.00	27.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	401.00	0.00	367.00	5.00	29.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCC..........................................	23	1	383.00	0.00	354.00	5.00	24.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCC..........................................	22	1	379.00	0.00	343.00	11.00	25.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	371.00	2.00	339.00	15.00	15.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	371.00	0.00	327.00	18.00	26.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	342.00	2.00	331.00	9.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	335.00	1.00	304.00	16.00	14.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	332.00	3.00	303.00	13.00	13.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	325.00	0.00	295.00	10.00	20.00
.....................................................................................................TGTTAACTGTAAxACTGTGTCT..........................................	21	1	321.00	0.00	295.00	9.00	17.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	310.00	0.00	299.00	11.00	0.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	309.00	0.00	300.00	9.00	0.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	309.00	2.00	280.00	16.00	11.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	1	307.00	0.00	290.00	3.00	14.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	292.00	2.00	263.00	7.00	20.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	283.00	0.00	254.00	6.00	23.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	276.00	2.00	248.00	6.00	20.00
.....................................................................................................TGTTAACTGTAxxACTGTGTCT..........................................	20	1	272.00	0.00	248.00	7.00	17.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCC..........................................	22	1	244.00	0.00	238.00	2.00	4.00
.........................................................................................................AACTGTAAGACTGTGTCT..........................................	18	1	242.00	0.00	231.00	6.00	5.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	208.00	1.00	182.00	7.00	18.00
.....................................................................................................TGTTAACTGTxAGACTGTGTCT..........................................	21	1	203.00	0.00	190.00	7.00	6.00
.....................................................................................................TGTTAACTGTAATACTGTGTCG..........................................	22	1	195.00	0.00	172.00	7.00	16.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCC..........................................	22	1	175.00	0.00	153.00	7.00	15.00
.....................................................................................................TTTTAACTGTGAGACTGTGTCT..........................................	22	1	170.00	0.00	164.00	3.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	168.00	0.00	149.00	4.00	15.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	163.00	1.00	155.00	5.00	2.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	162.00	1.00	150.00	6.00	5.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	161.00	2.00	136.00	10.00	13.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	161.00	5.00	130.00	13.00	13.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	151.00	0.00	139.00	1.00	11.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCG..........................................	22	1	145.00	0.00	127.00	5.00	13.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	145.00	0.00	129.00	3.00	13.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	144.00	2.00	128.00	6.00	8.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCC..........................................	22	1	142.00	0.00	128.00	8.00	6.00
...............................................................ACATAGTCGTACGGTGAATGTT................................................................................	22	1	133.00	5.00	94.00	6.00	28.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	128.00	3.00	114.00	7.00	4.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	125.00	3.00	117.00	2.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGTCC............................................	20	1	122.00	0.00	115.00	0.00	7.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCC..........................................	22	1	116.00	0.00	113.00	2.00	1.00
.....................................................................................................TGTTAACTxTAAGACTGTGTCT..........................................	21	1	111.00	0.00	94.00	6.00	11.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCC..........................................	22	1	107.00	0.00	99.00	1.00	7.00
.....................................................................................................TGTTAACTGTAAGACTGTGAC...........................................	21	1	107.00	0.00	103.00	2.00	2.00
.......................................................................................................TTAACTGTGAGACTGTGTCT..........................................	20	1	107.00	0.00	104.00	1.00	2.00
.....................................................................................................TCTTAACTGTGAGACTGTGTCT..........................................	22	1	103.00	0.00	98.00	5.00	0.00
......................................................................................................GTTAACTGTAAGACTGTGTCC..........................................	21	1	102.00	0.00	83.00	11.00	8.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	102.00	2.00	83.00	6.00	11.00
.....................................................................................................TGTTAACTGTGAGACTTTGTCT..........................................	22	1	101.00	0.00	98.00	2.00	1.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	100.00	1.00	80.00	10.00	9.00
......................................................................................................TTTAACTGTGAGACTGTGTCT..........................................	21	1	98.00	0.00	97.00	1.00	0.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	96.00	1.00	89.00	4.00	2.00
.......................................................................................................TTAACTGTAAGACTGTGTCG..........................................	20	1	93.00	0.00	85.00	4.00	4.00
.....................................................................................................TGTTAACTGTAAGACTGT..............................................	18	1	93.00	0.00	81.00	8.00	4.00
......................................................................................................TTTAACTGTAAGACTGTGTCG..........................................	21	1	92.00	0.00	80.00	2.00	10.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	91.00	1.00	82.00	4.00	4.00
.....................................................................................................TGTAAACTGTAAGACTGTGTCT..........................................	22	1	91.00	1.00	84.00	1.00	5.00
.....................................................................................................TGTTAACTGTAACACTGTGTCG..........................................	22	1	88.00	0.00	75.00	3.00	10.00
.....................................................................................................TGTTAACxxTAAGACTGTGTCT..........................................	20	1	88.00	0.00	80.00	1.00	7.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	82.00	1.00	70.00	5.00	6.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	79.00	0.00	69.00	2.00	8.00
.....................................................................................................TGTTAACTGTGATACTGTGTCT..........................................	22	1	77.00	0.00	72.00	3.00	2.00
......................................................................................................TGTAACTGTAAGACTGTGTCT..........................................	21	1	75.00	0.00	73.00	1.00	1.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCG..........................................	23	1	71.00	0.00	59.00	3.00	9.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCC..........................................	22	1	69.00	0.00	63.00	3.00	3.00

droSec1

GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	92271.00	12625.00	9147.00	70499.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	12482.00	1057.00	129.00	11296.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	1639.00	180.00	23.00	1436.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	1455.00	183.00	86.00	1186.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	1397.00	259.00	103.00	1035.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	1271.00	164.00	115.00	992.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	983.00	117.00	26.00	840.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	830.00	60.00	7.00	763.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	661.00	170.00	42.00	449.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	520.00	176.00	51.00	293.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	345.00	82.00	36.00	227.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	251.00	27.00	10.00	214.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	222.00	20.00	32.00	170.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	176.00	76.00	4.00	96.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	169.00	81.00	15.00	73.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	161.00	80.00	8.00	73.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	151.00	13.00	0.00	138.00
.....................................................................................................TGTTAACTGTAGGACTGTGTC...........................................	21	1	146.00	9.00	1.00	136.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	123.00	12.00	10.00	101.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	119.00	13.00	23.00	83.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	1	116.00	6.00	2.00	108.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	111.00	17.00	12.00	82.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	105.00	10.00	8.00	87.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	52.50	4.50	6.50	41.50
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	99.00	14.00	10.00	75.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	97.00	10.00	14.00	73.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	96.00	9.00	11.00	76.00
.....................................................................................................TGTTAACTGTAAGACTGTGACT..........................................	22	1	93.00	3.00	3.00	87.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	93.00	12.00	2.00	79.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	91.00	16.00	12.00	63.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	91.00	11.00	11.00	69.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	90.00	13.00	11.00	66.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	90.00	8.00	7.00	75.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	80.00	13.00	12.00	55.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	79.00	9.00	6.00	64.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	75.00	6.00	6.00	63.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	73.00	13.00	10.00	50.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	72.00	7.00	13.00	52.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	69.00	2.00	4.00	63.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	67.00	12.00	8.00	47.00
.....................................................................................................TGTTAACTGTxAGACTGTGTCT..........................................	21	1	64.00	5.00	29.00	30.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	61.00	5.00	34.00	22.00
.....................................................................................................TGTTAACTGAAAGACTGTGTCT..........................................	22	1	61.00	4.00	2.00	55.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	60.00	8.00	19.00	33.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	59.00	10.00	8.00	41.00
...............................................................ACATAGTCATACGGTGAATGTT................................................................................	22	1	58.00	1.00	40.00	17.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	58.00	7.00	15.00	36.00
....................................................................................................ATGTTAACTGTGAGACTGTGTCT..........................................	23	1	56.00	4.00	1.00	51.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	56.00	3.00	2.00	51.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	1	53.00	17.00	3.00	33.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	53.00	7.00	2.00	44.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	52.00	2.00	6.00	44.00
.....................................................................................................TGTTAACTGTGAGACTGTGT............................................	20	1	51.00	3.00	0.00	48.00
.....................................................................................................TGTTAACAGTAAGACTGTGTCT..........................................	22	1	50.00	0.00	1.00	49.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	48.00	9.00	2.00	37.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	48.00	2.00	4.00	42.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	47.00	3.00	4.00	40.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	46.00	7.00	5.00	34.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	43.00	3.00	5.00	35.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	42.00	7.00	8.00	27.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	42.00	9.00	2.00	31.00
....................................................................................................ATGTTAACTGTAAGACTGTGT............................................	21	1	40.00	5.00	1.00	34.00
.....................................................................................................TGTTAACTGTAGGACTGTGT............................................	20	1	40.00	5.00	0.00	35.00
.....................................................................................................TGTAAACTGTAAGACTGTGTCT..........................................	22	1	39.00	2.00	4.00	33.00
.....................................................................................................TGTTAACTGTTAGACTGTGTCT..........................................	22	1	39.00	1.00	18.00	20.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTAA........................................	24	1	38.00	10.00	11.00	17.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	38.00	7.00	7.00	24.00
.....................................................................................................TGTTAACTGTATGACTGTGTCT..........................................	22	1	38.00	6.00	16.00	16.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	37.00	2.00	0.00	35.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	36.00	7.00	6.00	23.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	35.00	6.00	4.00	25.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	32.00	3.00	6.00	23.00
...............................................................ACATAGTCATACGGTGAATGTTG...............................................................................	23	1	31.00	3.00	11.00	17.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	30.00	2.00	10.00	18.00
....................................................................................................ATGTTAACTGTAAGACTGTGTC...........................................	22	1	29.00	6.00	1.00	22.00
.....................................................................................................TGTTAACTGTGAGACTGTCT............................................	20	1	29.00	3.00	1.00	25.00
.....................................................................................................TGTTGACTGTAGGACTGTGTCT..........................................	22	1	27.00	2.00	0.00	25.00
...............................................................ACATAGTCATACGGTGAATGT.................................................................................	21	1	27.00	5.00	2.00	20.00
.....................................................................................................TGTTAACTGCGAGACTGTGTCT..........................................	22	1	26.00	3.00	0.00	23.00
.....................................................................................................TGTTAACTGTGAGACTGTCTCT..........................................	22	1	26.00	8.00	0.00	18.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	1	25.00	0.00	1.00	24.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	1	24.00	6.00	5.00	13.00
.....................................................................................................TGTTAACTGTGAGACTGTTTCT..........................................	22	1	22.00	9.00	0.00	13.00
.....................................................................................................TGTTAACTGTGGGACTGTGTC...........................................	21	1	21.00	0.00	0.00	21.00
.....................................................................................................TGTTAACTGTAAGACTGTG.............................................	19	1	21.00	1.00	0.00	20.00
.....................................................................................................TGTTAACTGTGAGACTGTGTAT..........................................	22	1	20.00	0.00	0.00	20.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	20.00	3.00	5.00	12.00
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	1	19.00	3.00	3.00	13.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCC..........................................	22	1	19.00	3.00	0.00	16.00
.....................................................................................................TGTTAACTGTGAGACTGTGACT..........................................	22	1	18.00	0.00	0.00	18.00
.....................................................................................................TGTTAACTGTGAGACTGTATCT..........................................	22	1	18.00	5.00	0.00	13.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	17.00	3.00	5.00	9.00
.....................................................................................................TGTTAACTGTGAGGCTGTGTCT..........................................	22	1	17.00	2.00	0.00	15.00
.....................................................................................................TGTTAACCGTGAGACTGTGTCT..........................................	22	1	16.00	2.00	0.00	14.00
.....................................................................................................TTTTAACTGTGAGACTGTGTCT..........................................	22	1	16.00	0.00	1.00	15.00
......................................................................................................TTTAACTGTGAGACTGTGTCT..........................................	21	1	16.00	0.00	0.00	16.00
.....................................................................................................TGTTAACTGxxAGACTGTGTCT..........................................	20	1	15.00	2.00	1.00	12.00
....................................................................................................ATGTTAACTGTAGGACTGTGTCT..........................................	23	1	15.00	1.00	0.00	14.00
.....................................................................................................TGTTAGCTGTGAGACTGTGTCT..........................................	22	1	15.00	4.00	1.00	10.00
.....................................................................................................TGTTAACTGTAAGACAGTGTCT..........................................	22	1	15.00	0.00	6.00	9.00

droYak2

AA-----------ATCGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACATCAGCC--ACATCGG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	2	70673.50	800.00	4712.00	3699.00	10916.00	50546.50
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	2	9388.00	5.50	657.00	256.50	1444.50	7024.50
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	2	7245.50	2.50	7.50	8.00	17.50	7210.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	2	1298.50	7.50	56.50	35.00	161.50	1038.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	2	1268.00	0.50	76.00	15.50	160.50	1015.50
.....................................................................................................TGTTAACTGTAAGACTGTGTCG..........................................	22	2	1203.50	0.50	2.00	1.00	4.50	1195.50
.....................................................................................................TGTTAACTGTGAGACTGTGTCC..........................................	22	2	1044.00	0.00	0.50	0.50	1.50	1041.50
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	2	1038.00	2.00	55.00	40.00	164.00	777.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	2	1001.00	1.00	48.00	0.50	74.50	877.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	2	978.50	0.00	59.00	25.50	145.00	749.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	2	760.00	0.00	1.00	3.50	6.50	749.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	2	479.50	1.00	1.00	6.00	2.00	469.50
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	2	445.00	0.00	0.00	5.50	0.50	439.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	2	353.50	0.00	2.50	3.50	5.50	342.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	2	349.50	18.00	46.50	54.00	138.00	93.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	2	342.50	0.00	2.00	2.50	9.00	329.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	2	263.00	0.00	10.50	0.50	30.00	222.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	2	255.00	2.00	9.50	0.50	63.00	180.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCT..........................................	22	2	249.50	3.50	47.50	0.50	196.00	2.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	2	204.50	0.50	14.50	2.00	23.00	164.50
.....................................................................................................TGTTAACTGTGAGACTGTGTCG..........................................	22	2	185.00	0.00	0.00	0.00	0.50	184.50
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	2	166.50	4.50	6.00	23.00	30.50	102.50
....................................................................................................ATGTTAACTGTAAGACTGTGTCC..........................................	23	2	148.00	0.00	0.00	0.00	0.00	148.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	2	147.50	2.50	24.00	5.00	35.50	80.50
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	2	141.50	1.00	32.00	13.50	81.00	14.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	2	129.50	0.00	12.50	2.50	26.00	88.50
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	4	64.75	0.00	0.00	1.00	0.25	63.50
.....................................................................................................TGTTAACTGTAATACTGTGTCC..........................................	22	2	125.00	0.00	0.00	0.00	0.50	124.50
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	2	117.50	1.00	2.00	10.00	6.50	98.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	2	116.00	0.50	20.00	1.50	54.50	39.50
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	2	114.00	1.50	7.00	3.50	28.50	73.50
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	2	113.50	1.00	5.50	7.00	27.00	73.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	2	111.50	12.00	16.00	15.50	29.50	38.50
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	2	97.00	1.00	5.00	4.50	24.00	62.50
.....................................................................................................TTTTAACTGTAAGACTGTGTCC..........................................	22	2	93.50	0.00	0.00	0.00	0.00	93.50
.....................................................................................................TGTTAACTGTAGGACTGTGTCC..........................................	22	2	93.50	0.00	0.00	0.00	0.00	93.50
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	2	85.00	3.00	6.00	3.00	34.00	39.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	2	81.00	0.50	4.50	0.50	71.50	4.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	2	76.00	1.00	4.50	4.00	32.00	34.50
.......................................................................................................TTAACTGTAAGACTGTGTCC..........................................	20	2	70.00	0.00	0.00	0.00	0.00	70.00
......................................................................................................TTTAACTGTAAGACTGTGTCC..........................................	21	2	68.00	0.00	0.00	0.00	0.00	68.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	2	66.00	0.00	2.00	1.00	6.50	56.50
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	2	63.00	0.50	1.50	2.50	10.00	48.50
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	2	60.00	1.50	6.50	5.50	19.00	27.50
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	2	58.50	1.00	3.00	1.50	13.00	40.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	2	58.00	0.00	1.50	2.00	4.50	50.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	2	57.50	0.50	7.00	3.50	23.50	23.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	2	54.50	0.50	6.50	1.50	33.00	13.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	2	54.50	3.50	5.50	3.00	42.50	0.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	2	53.50	1.00	4.50	4.00	9.50	34.50
.....................................................................................................TGTTAACTGTAACACTGTGTCC..........................................	22	2	53.00	0.00	0.00	0.00	0.00	53.00
....................................................................................................ATGTTAACTGTGAGACTGTGTCT..........................................	23	2	51.50	0.00	3.50	1.50	8.00	38.50
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	2	50.00	0.00	4.00	1.50	7.00	37.50
.....................................................................................................TTTTAACTGTGAGACTGTGTCT..........................................	22	2	50.00	0.00	0.50	0.50	1.50	47.50
.....................................................................................................TGTTAACTGTxATACTGTGTCT..........................................	21	2	49.50	0.00	0.00	0.00	0.00	49.50
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	2	49.00	0.00	6.50	0.00	38.00	4.50
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	2	46.50	1.00	7.00	2.00	10.50	26.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	2	44.00	2.00	5.00	1.00	25.00	11.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	2	42.00	1.50	3.00	1.00	21.00	15.50
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	2	42.00	4.50	6.50	1.50	12.00	17.50
.....................................................................................................TGTTAACTGTxACACTGTGTCT..........................................	21	2	42.00	0.00	0.00	0.00	0.00	42.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	2	41.00	0.00	2.00	4.50	9.00	25.50
.....................................................................................................TGGTAACTGTGAGACTGTGTCT..........................................	22	2	41.00	0.00	9.50	0.00	31.00	0.50
.....................................................................................................TCTTAACTGTAAGACTGTGTCC..........................................	22	2	40.50	0.00	0.00	0.00	0.00	40.50
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	2	40.50	0.50	5.00	0.00	12.50	22.50
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	2	37.00	0.00	6.00	2.50	8.00	20.50
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	2	36.50	0.00	5.50	0.50	11.50	19.00
.....................................................................................................TGTTAACTGTAAxACTGTGTCT..........................................	21	2	36.00	0.00	0.00	0.00	0.00	36.00
.....................................................................................................TGTTAACTGTGCGACTGTGTCT..........................................	22	2	33.50	0.00	3.00	0.00	5.00	25.50
.....................................................................................................TGTTAACTGTGATACTGTGTCT..........................................	22	2	33.00	0.00	5.50	0.00	4.50	23.00
.....................................................................................................TGTTAACTGTGAGGCTGTGTCT..........................................	22	2	32.00	0.00	1.00	0.50	7.50	23.00
.....................................................................................................TGTTAACTGTAxxACTGTGTCT..........................................	20	2	31.50	0.00	0.00	0.00	0.00	31.50
.....................................................................................................TGTTAACTGTxAGACTGTGTCT..........................................	21	2	31.50	0.50	1.00	1.00	1.50	27.50
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	2	31.00	0.50	3.50	2.50	13.50	11.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	2	30.50	0.50	2.50	1.50	7.00	19.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	2	30.50	0.50	3.00	0.50	5.00	21.50
.....................................................................................................TGGTAACTGGAAGACTGTGTCT..........................................	22	2	30.00	0.00	6.00	0.00	24.00	0.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	2	30.00	0.00	0.00	0.50	1.00	28.50
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	2	30.00	0.00	3.00	0.00	19.00	8.00
.....................................................................................................TGTTAACTGTAATACTGTGTCG..........................................	22	2	29.00	0.00	0.00	0.00	0.00	29.00
.....................................................................................................TGTTAACTGTGAGACTTTGTCT..........................................	22	2	28.50	0.00	1.50	0.00	1.50	25.50
.......................................................................................................TTAACTGTGAGACTGTGTCT..........................................	20	2	28.00	0.00	0.00	0.00	0.50	27.50
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	2	27.50	3.00	6.00	0.50	13.00	5.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	2	27.00	1.50	5.00	0.50	18.50	1.50
.....................................................................................................TGTTAACTTTAAGACTGTGTCC..........................................	22	2	25.00	0.00	0.00	0.00	0.00	25.00
.....................................................................................................TGTGAACTGTAAGACTGTGTCT..........................................	22	2	25.00	0.50	2.00	0.50	21.50	0.50
....................................................................................................ATGTTAACTGTAAGACTGTGTC...........................................	22	2	25.00	0.00	1.00	0.50	3.00	20.50
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	2	24.50	0.50	0.50	1.50	5.50	16.50
.....................................................................................................TGTTAACTGTAAGACTTTGTCC..........................................	22	2	24.50	0.00	0.00	0.00	0.00	24.50
.....................................................................................................TGTTAACTGTACGACTGTGTCC..........................................	22	2	24.00	0.00	0.00	0.00	0.00	24.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCG..........................................	23	2	23.50	0.00	0.00	0.00	0.00	23.50
.....................................................................................................TCTTAACTGTGAGACTGTGTCT..........................................	22	2	22.50	0.00	0.00	0.50	1.00	21.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	2	22.50	0.50	1.50	0.50	10.50	9.50
......................................................................................................TTTAACTGTGAGACTGTGTCT..........................................	21	2	22.00	0.00	0.00	0.50	0.00	21.50
....................................................................................................ATGTTAACTGTGGGACTGTGTCT..........................................	23	2	22.00	0.00	0.50	0.00	1.00	20.50
.....................................................................................................TGTTAACTxTAAGACTGTGTCT..........................................	21	2	22.00	0.00	0.00	0.00	0.00	22.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	2	21.50	0.50	4.00	1.00	6.50	9.50
.....................................................................................................TGTTAACTTTGAGACTGTGTCT..........................................	22	2	21.50	0.50	4.50	0.00	7.50	9.00
.........................................................................................................AACTGTAAGACTGTGTCT..........................................	18	2	20.50	0.00	2.00	0.00	1.00	17.50
.....................................................................................................TGTTAACGGTAAGACTGTGTCT..........................................	22	2	20.50	0.50	1.00	0.00	16.50	2.50

droEre2

GATG--------AACGAA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACACCAGCC--ACACCAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	103548.00	2745.00	14806.00	0.00	85997.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	8830.00	13.00	729.00	0.00	8088.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	1923.00	21.00	125.00	0.00	1777.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	1524.00	18.00	213.00	0.00	1293.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	973.00	14.00	79.00	0.00	880.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	873.00	3.00	77.00	0.00	793.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	807.00	43.00	82.00	0.00	682.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	728.00	4.00	90.00	0.00	634.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	720.00	9.00	65.00	0.00	646.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	451.00	3.00	16.00	0.00	432.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	432.00	0.00	45.00	0.00	387.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	387.00	23.00	54.00	0.00	310.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	381.00	10.00	28.00	0.00	343.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	327.00	31.00	75.00	0.00	221.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	286.00	4.00	10.00	0.00	272.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	1	284.00	3.00	15.00	0.00	266.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	270.00	9.00	7.00	0.00	254.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	268.00	18.00	38.00	0.00	212.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	215.00	2.00	9.00	0.00	204.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCT..........................................	22	1	211.00	15.00	99.00	0.00	97.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	190.00	11.00	19.00	0.00	160.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	186.00	7.00	15.00	0.00	164.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	169.00	5.00	45.00	0.00	119.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	157.00	1.00	26.00	0.00	130.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	155.00	4.00	25.00	0.00	126.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	1	140.00	2.00	9.00	0.00	129.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	136.00	4.00	15.00	0.00	117.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	134.00	5.00	24.00	0.00	105.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	129.00	0.00	1.00	0.00	128.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	124.00	5.00	16.00	0.00	103.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	110.00	0.00	1.00	0.00	109.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	107.00	4.00	11.00	0.00	92.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	106.00	5.00	8.00	0.00	93.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	99.00	6.00	48.00	0.00	45.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	94.00	3.00	10.00	0.00	81.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	93.00	2.00	7.00	0.00	84.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	93.00	2.00	6.00	0.00	85.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	89.00	0.00	15.00	0.00	74.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	44.00	0.00	0.00	0.00	44.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	88.00	4.00	19.00	0.00	65.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	87.00	6.00	12.00	0.00	69.00
.....................................................................................................TGTTAACTGTTAGACTGTGTCT..........................................	22	1	87.00	2.00	3.00	0.00	82.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	81.00	3.00	12.00	0.00	66.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	81.00	3.00	16.00	0.00	62.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	77.00	1.00	12.00	0.00	64.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	75.00	7.00	12.00	0.00	56.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	1	72.00	0.00	17.00	0.00	55.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	72.00	7.00	23.00	0.00	42.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	71.00	2.00	13.00	0.00	56.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	70.00	3.00	8.00	0.00	59.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	68.00	4.00	26.00	0.00	38.00
...............................................................ACATAGTCATACGGTGAATGTT................................................................................	22	1	67.00	0.00	23.00	0.00	44.00
.....................................................................................................TGTTAACTGTxAGACTGTGTCT..........................................	21	1	64.00	0.00	2.00	0.00	62.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	64.00	0.00	3.00	0.00	61.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	62.00	3.00	11.00	0.00	48.00
.........................................................................................................AACTGTAAGACTGTGTCT..........................................	18	1	62.00	3.00	3.00	0.00	56.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	61.00	7.00	10.00	0.00	44.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	61.00	8.00	17.00	0.00	36.00
.....................................................................................................TGTTAACTGTGATACTGTGTCT..........................................	22	1	58.00	0.00	1.00	0.00	57.00
.....................................................................................................TGTGAACTGTAAGACTGTGTCT..........................................	22	1	58.00	2.00	5.00	0.00	51.00
.....................................................................................................TGTTAACTGTATGACTGTGTCT..........................................	22	1	52.00	0.00	6.00	0.00	46.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	48.00	0.00	6.00	0.00	42.00
....................................................................................................ATGTTAACTGTGAGACTGTGTCT..........................................	23	1	47.00	0.00	3.00	0.00	44.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	46.00	2.00	11.00	0.00	33.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	46.00	4.00	6.00	0.00	36.00
....................................................................................................ATGTTAACTGTAAGACTGTGTC...........................................	22	1	43.00	0.00	8.00	0.00	35.00
...............................................................ACATAGTCATACGGTGAATGTTG...............................................................................	23	1	42.00	0.00	6.00	0.00	36.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	40.00	9.00	6.00	0.00	25.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTG.........................................	23	1	40.00	0.00	4.00	0.00	36.00
.....................................................................................................TGTTAACTGTGAGACTGTGTAT..........................................	22	1	39.00	0.00	0.00	0.00	39.00
.....................................................................................................TGTAAACTGTAAGACTGTGTCT..........................................	22	1	39.00	5.00	2.00	0.00	32.00
....................................................................................................ATGTTAACTGTAAGACTGTGT............................................	21	1	39.00	1.00	1.00	0.00	37.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	38.00	3.00	8.00	0.00	27.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	35.00	3.00	1.00	0.00	31.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	34.00	0.00	3.00	0.00	31.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	1	33.00	1.00	0.00	0.00	32.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	33.00	4.00	17.00	0.00	12.00
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	1	33.00	2.00	4.00	0.00	27.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	32.00	4.00	15.00	0.00	13.00
......................................................................................................GTTAACTGTGAGACTGTGTCT..........................................	21	1	30.00	0.00	3.00	0.00	27.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	1	29.00	0.00	2.00	0.00	27.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	28.00	0.00	1.00	0.00	27.00
.....................................................................................................TGTTAACTTTGAGACTGTGTCT..........................................	22	1	28.00	0.00	3.00	0.00	25.00
.....................................................................................................TTTTAACTGTGAGACTGTGTCT..........................................	22	1	27.00	0.00	0.00	0.00	27.00
.....................................................................................................TGTTAACTGTAATACTTTGTCT..........................................	22	1	26.00	9.00	9.00	0.00	8.00
...............................................................ACATAGTCATACGGTGAATGT.................................................................................	21	1	25.00	0.00	2.00	0.00	23.00
.....................................................................................................TGTTAACTGTAAGACTGTGTGT..........................................	22	1	25.00	0.00	7.00	0.00	18.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	25.00	7.00	7.00	0.00	11.00
.....................................................................................................TGTTAACTGTGAGACTTTGTCT..........................................	22	1	25.00	0.00	1.00	0.00	24.00
.....................................................................................................TGTTAACTGTAAGACTGTG.............................................	19	1	24.00	0.00	3.00	0.00	21.00
.....................................................................................................TGTTAACTGTGAGAATGTGTCT..........................................	22	1	23.00	0.00	3.00	0.00	20.00
.....................................................................................................TGTTAACTGTGAGACTGTCT............................................	20	1	22.00	0.00	0.00	0.00	22.00
.....................................................................................................TGTTAACTGCGAGACTGTGTCT..........................................	22	1	22.00	0.00	3.00	0.00	19.00
.....................................................................................................TGGTAACTGGAAGACTGTGTCT..........................................	22	1	22.00	1.00	21.00	0.00	0.00
.....................................................................................................TGTTTACTGTAAGACTGTGTCT..........................................	22	1	21.00	2.00	6.00	0.00	13.00
.....................................................................................................TGTTAACTGTGAGACTGTTTCT..........................................	22	1	21.00	0.00	2.00	0.00	19.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCC..........................................	23	1	20.00	0.00	0.00	0.00	20.00
.....................................................................................................TGTTATCTGTAAGACTGTGTCT..........................................	22	1	19.00	1.00	6.00	0.00	12.00
....................................................................................................ATGTTAACTGTAATACTGTGTCT..........................................	23	1	18.00	2.00	0.00	0.00	16.00
.....................................................................................................TGTTAACTGTAAGACTGTGACT..........................................	22	1	18.00	1.00	4.00	0.00	13.00

droEug1

CATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCTGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAATAACAATGTATCAA

Size

Hit Count

Total Norm

droBia1

A-------------C-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACA---------------

Size

Hit Count

Total Norm

droTak1

-ACG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----CAGCAACAA-A----AGTACCAA

Size

Hit Count

Total Norm

droEle1

AACG--------AACGA-----------T--AGAAGAAAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGCTTGCCAGCC----AGC----------CCAGCA----

Size

Hit Count

Total Norm

droRho1

GATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAC-AATC--GTATC--

Size

Hit Count

Total Norm

droFic1

AGTA------G-AAAGGA----------GAGAGGAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CATCAACAATGGCCCAGCATTAG

Size

Hit Count

Total Norm

droKik1

GTCG--------CAG-----------------GAATAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACATGAAGCAAGTGGAGA

Size

Hit Count

Total Norm

droAna3

GTTG------CCAAAGGA----------C---CAAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCTCACTATC--	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	85290.00	10726.00	58754.00	15349.00	461.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	5478.00	712.00	3905.00	812.00	49.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	4314.00	242.00	3487.00	584.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	1	1052.00	183.00	733.00	134.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	933.00	153.00	586.00	190.00	4.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCT..........................................	22	1	842.00	4.00	500.00	335.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	654.00	133.00	492.00	29.00	0.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	596.00	173.00	372.00	50.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	562.00	51.00	272.00	51.00	188.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	559.00	80.00	351.00	126.00	2.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	499.00	46.00	392.00	61.00	0.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	415.00	62.00	283.00	64.00	6.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	202.00	38.00	120.00	44.00	0.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	172.00	6.00	89.00	75.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	172.00	7.00	131.00	26.00	8.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	172.00	14.00	91.00	66.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTGT..........................................	22	1	161.00	52.00	97.00	12.00	0.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	150.00	19.00	69.00	60.00	2.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	145.00	11.00	87.00	46.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	138.00	31.00	80.00	26.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	135.00	9.00	58.00	66.00	2.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	134.00	18.00	81.00	33.00	2.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	129.00	13.00	89.00	22.00	5.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	127.00	36.00	91.00	0.00	0.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	1	124.00	3.00	9.00	111.00	1.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	124.00	38.00	40.00	43.00	3.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	1	122.00	6.00	42.00	74.00	0.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	121.00	24.00	75.00	22.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	117.00	16.00	92.00	9.00	0.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	113.00	29.00	77.00	6.00	1.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	110.00	11.00	74.00	25.00	0.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	106.00	15.00	49.00	40.00	2.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	99.00	10.00	65.00	21.00	3.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	98.00	28.00	66.00	3.00	1.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	96.00	8.00	62.00	24.00	2.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	95.00	37.00	30.00	27.00	1.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	92.00	1.00	3.00	87.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	89.00	13.00	51.00	24.00	1.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	83.00	10.00	52.00	20.00	1.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	83.00	18.00	53.00	12.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	82.00	8.00	40.00	32.00	2.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	79.00	30.00	34.00	15.00	0.00
...............................................................ACATAGTCGTACGGTGAATGTT................................................................................	22	1	79.00	12.00	26.00	40.00	1.00
.....................................................................................................TGTTAACTGTATGACTGTGTCT..........................................	22	1	79.00	49.00	17.00	13.00	0.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	72.00	6.00	15.00	51.00	0.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	68.00	9.00	10.00	49.00	0.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	67.00	10.00	41.00	16.00	0.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	33.00	4.00	29.00	0.00	0.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	65.00	6.00	39.00	20.00	0.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	62.00	20.00	11.00	29.00	2.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	59.00	7.00	14.00	36.00	2.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	59.00	4.00	20.00	31.00	4.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	55.00	4.00	27.00	23.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTATT.........................................	23	1	53.00	10.00	43.00	0.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	53.00	7.00	34.00	12.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	52.00	3.00	5.00	44.00	0.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	50.00	8.00	28.00	14.00	0.00
.....................................................................................................TGTGAACTGTAAGACTGTGTCT..........................................	22	1	47.00	2.00	2.00	43.00	0.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCTT.........................................	23	1	45.00	0.00	28.00	17.00	0.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	44.00	22.00	13.00	9.00	0.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	44.00	4.00	18.00	22.00	0.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	42.00	1.00	25.00	16.00	0.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	42.00	2.00	26.00	14.00	0.00
.....................................................................................................TGTTAACTGTAAGACAGTGTCT..........................................	22	1	41.00	30.00	9.00	2.00	0.00
.....................................................................................................TGTTAACTGTTAGACTGTGTCT..........................................	22	1	40.00	10.00	22.00	8.00	0.00
......................................................................................................GTTAACTGTAAGACTGTGTCTT.........................................	22	1	40.00	3.00	34.00	2.00	1.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	39.00	7.00	18.00	12.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTAA........................................	24	1	38.00	2.00	6.00	1.00	29.00
.....................................................................................................TGTTAACTGTAAGACGGTGTCT..........................................	22	1	38.00	8.00	21.00	9.00	0.00
.....................................................................................................TGTTAACGGTAAGACTGTGTCT..........................................	22	1	38.00	0.00	4.00	33.00	1.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	36.00	4.00	22.00	9.00	1.00
.....................................................................................................TGTTAACTGTAATACTGTGTCTT.........................................	23	1	36.00	5.00	27.00	4.00	0.00
.....................................................................................................TGGTAACTGGAAGACTGTGTCT..........................................	22	1	36.00	0.00	0.00	36.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTG........................................	24	1	35.00	1.00	29.00	4.00	1.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	33.00	3.00	6.00	24.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGTAT..........................................	22	1	33.00	4.00	29.00	0.00	0.00
.....................................................................................................TGGTAACTGTGAGACTGTGTCT..........................................	22	1	32.00	0.00	20.00	12.00	0.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	1	31.00	8.00	20.00	3.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	31.00	1.00	4.00	26.00	0.00
.....................................................................................................TGTTAACTGTxAGACTGTGTCT..........................................	21	1	30.00	1.00	27.00	2.00	0.00
.....................................................................................................TGTTAAGTGTAAGACTGTGTCT..........................................	22	1	30.00	4.00	7.00	19.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTG.........................................	23	1	30.00	4.00	18.00	8.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	26.00	3.00	8.00	14.00	1.00
.....................................................................................................TGTAAACTGTAAGACTGTGTCT..........................................	22	1	25.00	10.00	8.00	7.00	0.00
.....................................................................................................TGTTAACTGTGATACTGTGTCT..........................................	22	1	25.00	0.00	22.00	3.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCTT.........................................	23	1	24.00	3.00	16.00	5.00	0.00
.....................................................................................................TGGTAACTGTAATACTGTGTCT..........................................	22	1	24.00	0.00	6.00	18.00	0.00
.....................................................................................................TGTTAACTGAAAGACTGTGTCT..........................................	22	1	24.00	2.00	9.00	13.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	1	23.00	3.00	3.00	16.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	22.00	4.00	7.00	9.00	2.00
......................................................................................................GTTAACTGTAAGACTGTGTCTTT........................................	23	1	21.00	2.00	19.00	0.00	0.00
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	1	20.00	1.00	8.00	11.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	17.00	1.00	12.00	4.00	0.00
.....................................................................................................TGTTAACTGCGAGACTGTGTCT..........................................	22	1	16.00	0.00	8.00	8.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCG..........................................	22	1	16.00	1.00	3.00	12.00	0.00
.........................................................................................................AACTGTAAGACTGTGTCT..........................................	18	1	15.00	4.00	11.00	0.00	0.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	15.00	0.00	11.00	4.00	0.00
.....................................................................................................TGGTAACTGTAAGACTGGGTCT..........................................	22	1	15.00	0.00	0.00	15.00	0.00
.....................................................................................................TGTTAACTTTGAGACTGTGTCT..........................................	22	1	15.00	2.00	9.00	4.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTTTCT..........................................	22	1	14.00	0.00	13.00	0.00	1.00

droBip1

GTTGTCGTTGCCAAAGGA----------C---CTAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCCCACTATC--

Size

Hit Count

Total Norm

dp4

----------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCAA--GCC---------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	22889.00	3359.00	3464.00	15349.00	717.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	1985.00	526.00	132.00	1256.00	71.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	1430.00	330.00	19.00	1026.00	55.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	1244.00	587.00	34.00	616.00	7.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCT..........................................	22	1	205.00	0.00	40.00	165.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	152.00	53.00	29.00	70.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	114.00	22.00	16.00	42.00	34.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	100.00	18.00	5.00	76.00	1.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	1	90.00	0.00	6.00	84.00	0.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	88.00	27.00	16.00	41.00	4.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	82.00	19.00	6.00	52.00	5.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	73.00	15.00	37.00	21.00	0.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	56.00	3.00	8.00	45.00	0.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	52.00	1.00	6.00	43.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	49.00	3.00	6.00	39.00	1.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	49.00	3.00	4.00	42.00	0.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	1	48.00	0.00	26.00	22.00	0.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	45.00	3.00	7.00	26.00	9.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	42.00	13.00	10.00	19.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	40.00	6.00	4.00	29.00	1.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	38.00	8.00	1.00	27.00	2.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	36.00	0.00	12.00	24.00	0.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	32.00	7.00	10.00	15.00	0.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	28.00	1.00	4.00	19.00	4.00
.....................................................................................................TGTTAACTGTAAGACTGTG.............................................	19	1	28.00	4.00	2.00	22.00	0.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	28.00	3.00	4.00	21.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	28.00	0.00	8.00	19.00	1.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	27.00	1.00	13.00	13.00	0.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	26.00	5.00	6.00	15.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	25.00	2.00	8.00	14.00	1.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	25.00	5.00	0.00	19.00	1.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	24.00	5.00	5.00	13.00	1.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	24.00	0.00	6.00	18.00	0.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	22.00	2.00	4.00	16.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	22.00	3.00	7.00	12.00	0.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	22.00	1.00	8.00	13.00	0.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	20.00	5.00	1.00	13.00	1.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	20.00	3.00	2.00	15.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	19.00	0.00	3.00	15.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	19.00	7.00	0.00	10.00	2.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	19.00	2.00	5.00	12.00	0.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	18.00	0.00	5.00	10.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	18.00	2.00	1.00	14.00	1.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	18.00	2.00	4.00	12.00	0.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	18.00	1.00	1.00	13.00	3.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	17.00	2.00	2.00	13.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	17.00	2.00	1.00	14.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	17.00	3.00	4.00	10.00	0.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	17.00	0.00	4.00	13.00	0.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	16.00	6.00	2.00	4.00	4.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	1	16.00	1.00	8.00	7.00	0.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	15.00	2.00	1.00	6.00	6.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	15.00	4.00	1.00	10.00	0.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	15.00	1.00	3.00	11.00	0.00
.....................................................................................................TGTTAACTGTATGACTGTGTCT..........................................	22	1	15.00	1.00	2.00	12.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTAA........................................	24	1	14.00	0.00	14.00	0.00	0.00
.....................................................................................................TGTTAACTGAAAGACTGTGTCT..........................................	22	1	14.00	1.00	0.00	13.00	0.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	14.00	3.00	4.00	7.00	0.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	13.00	2.00	0.00	10.00	1.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	13.00	0.00	4.00	9.00	0.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	12.00	3.00	3.00	6.00	0.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	12.00	3.00	1.00	7.00	1.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	12.00	0.00	0.00	9.00	3.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	12.00	1.00	1.00	9.00	1.00
.....................................................................................................TGTTAACTGTTAGACTGTGTCT..........................................	22	1	11.00	2.00	4.00	5.00	0.00
.....................................................................................................TGGTAACTGTGAGACTGTGTCT..........................................	22	1	11.00	0.00	0.00	11.00	0.00
.....................................................................................................TGTGAACTGTAAGACTGTGTCT..........................................	22	1	11.00	0.00	5.00	6.00	0.00
.....................................................................................................TGGTAAGTGTAAGACTGTGTCT..........................................	22	1	11.00	0.00	3.00	8.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGACT..........................................	22	1	11.00	1.00	1.00	9.00	0.00
.....................................................................................................TGATAACTGCAAGACTGTGTCT..........................................	22	1	10.00	0.00	1.00	9.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	1	10.00	6.00	1.00	3.00	0.00
.....................................................................................................TGGTAACTGTAATACTGTGTCT..........................................	22	1	10.00	0.00	2.00	8.00	0.00
.....................................................................................................TGATAACTGTAAGACTGTGTC...........................................	21	1	9.00	0.00	0.00	9.00	0.00
.....................................................................................................TGTTAACTGTAAGACGGTGTCT..........................................	22	1	9.00	0.00	2.00	7.00	0.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	8.00	1.00	1.00	6.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGCC...........................................	21	1	8.00	0.00	0.00	8.00	0.00
.....................................................................................................TGTTAACTGTAGGACTGTGTC...........................................	21	1	8.00	2.00	0.00	5.00	1.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	8.00	1.00	3.00	4.00	0.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	8.00	0.00	3.00	5.00	0.00
.....................................................................................................TGTTAAATGTAAGACTGTGGCT..........................................	22	1	7.00	0.00	3.00	4.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCG..........................................	22	1	7.00	2.00	1.00	3.00	1.00
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	1	7.00	1.00	1.00	5.00	0.00
.....................................................................................................TGGTAACTGGAAGACTGTGTCT..........................................	22	1	6.00	0.00	1.00	5.00	0.00
.....................................................................................................TGTTAACTGTAATACTGTGTC...........................................	21	1	6.00	1.00	0.00	5.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGT............................................	20	1	6.00	2.00	0.00	4.00	0.00
.....................................................................................................TGGTAACTGTAAGACTGTGTC...........................................	21	1	6.00	0.00	0.00	6.00	0.00
.....................................................................................................TGTTATCTGTAAGACTGTGTCT..........................................	22	1	6.00	0.00	1.00	5.00	0.00
.....................................................................................................TGTTAACGGTAAGACTGTGTCT..........................................	22	1	6.00	1.00	1.00	4.00	0.00
......................................................................................................GTTAACTGTAAGACTGTGTC...........................................	20	1	6.00	3.00	1.00	2.00	0.00
.....................................................................................................TGTTAAGTGTAAGACTGTGTCT..........................................	22	1	6.00	0.00	2.00	4.00	0.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	2.50	1.50	0.00	0.50	0.50
.....................................................................................................TGATAACTGGAAGACTGTGTCT..........................................	22	1	5.00	0.00	4.00	1.00	0.00
.....................................................................................................TGTTAACTGTAAGTCTGGGTCT..........................................	22	1	5.00	0.00	2.00	3.00	0.00
.....................................................................................................TGCTAACTGTGAGACTGTGTCT..........................................	22	1	5.00	0.00	0.00	5.00	0.00
.....................................................................................................TGCTAACTGTAAGACTGTGTC...........................................	21	1	5.00	1.00	1.00	3.00	0.00
.....................................................................................................TGGTAACTGTAAGACTGTCTCT..........................................	22	1	5.00	0.00	1.00	4.00	0.00
.....................................................................................................TGTTAACTGTGAGGCTGTGTCT..........................................	22	1	5.00	0.00	1.00	4.00	0.00
.....................................................................................................TGATAACTGTAAGACTGTGT............................................	20	1	5.00	0.00	0.00	5.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTGT..........................................	22	1	5.00	0.00	1.00	4.00	0.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	1	5.00	1.00	3.00	1.00	0.00

droPer1

GATG------T-GAAGGA--------------GCCCAA-AGGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA---------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	45517.00	5810.00	1161.00	15536.00	16015.00	6995.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	4121.00	549.00	45.00	1268.00	1944.00	315.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	3323.00	473.00	15.00	1311.00	1437.00	87.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	2923.00	935.00	11.00	583.00	1385.00	9.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	694.00	45.00	8.00	48.00	73.00	520.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCT..........................................	22	1	517.00	1.00	4.00	64.00	448.00	0.00
...............................................................ACATAGTCGTACGGTGAATGTT................................................................................	22	1	321.00	15.00	3.00	129.00	160.00	14.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	303.00	85.00	14.00	91.00	107.00	6.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	274.00	68.00	1.00	83.00	109.00	13.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	227.00	4.00	2.00	34.00	70.00	117.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	203.00	24.00	6.00	45.00	90.00	38.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCG..........................................	22	1	200.00	1.00	1.00	6.00	8.00	184.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	184.00	84.00	4.00	50.00	34.00	12.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	135.00	4.00	1.00	6.00	3.00	121.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	135.00	22.00	0.00	54.00	59.00	0.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	1	127.00	0.00	0.00	29.00	97.00	1.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	125.00	4.00	1.00	41.00	76.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	110.00	9.00	3.00	30.00	54.00	14.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	108.00	0.00	3.00	30.00	75.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	106.00	12.00	2.00	28.00	62.00	2.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	104.00	4.00	2.00	73.00	23.00	2.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	97.00	4.00	0.00	10.00	4.00	79.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	90.00	5.00	3.00	24.00	50.00	8.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	87.00	7.00	25.00	18.00	26.00	11.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	85.00	12.00	0.00	0.00	0.00	73.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	81.00	13.00	3.00	27.00	37.00	1.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	80.00	1.00	1.00	9.00	68.00	1.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	80.00	0.00	0.00	3.00	9.00	68.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	78.00	0.00	1.00	17.00	31.00	29.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	76.00	0.00	2.00	10.00	29.00	35.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	1	74.00	0.00	2.00	16.00	56.00	0.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	70.00	1.00	2.00	15.00	47.00	5.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	70.00	4.00	3.00	17.00	38.00	8.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	69.00	4.00	1.00	23.00	34.00	7.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	68.00	4.00	0.00	15.00	17.00	32.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	65.00	3.00	1.00	5.00	43.00	13.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	64.00	3.00	0.00	22.00	30.00	9.00
.....................................................................................................TGGTAACTGGAAGACTGTGTCT..........................................	22	1	62.00	0.00	0.00	6.00	56.00	0.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	61.00	1.00	0.00	18.00	35.00	7.00
.....................................................................................................TGTGAACTGTAAGACTGTGTCT..........................................	22	1	58.00	0.00	0.00	9.00	49.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	56.00	4.00	0.00	20.00	32.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	52.00	2.00	0.00	18.00	7.00	25.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	50.00	1.00	4.00	7.00	38.00	0.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	48.00	2.00	2.00	14.00	29.00	1.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	47.00	1.00	0.00	13.00	33.00	0.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	47.00	7.00	2.00	10.00	23.00	5.00
.....................................................................................................TGGTAACTGTAAGACTGTGT............................................	20	1	47.00	0.00	0.00	4.00	43.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTG.............................................	19	1	47.00	5.00	0.00	8.00	34.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	47.00	0.00	3.00	12.00	31.00	1.00
.....................................................................................................TGGTAACTGTAAGACTGTGTC...........................................	21	1	46.00	0.00	0.00	3.00	43.00	0.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	45.00	3.00	1.00	14.00	25.00	2.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	44.00	1.00	3.00	14.00	26.00	0.00
.....................................................................................................TGGTAACTGTGAGACTGTGTCT..........................................	22	1	43.00	0.00	0.00	2.00	41.00	0.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	43.00	0.00	1.00	15.00	21.00	6.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	42.00	1.00	4.00	10.00	27.00	0.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	42.00	0.00	0.00	17.00	17.00	8.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	38.00	1.00	0.00	12.00	24.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	36.00	0.00	2.00	17.00	15.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	35.00	1.00	0.00	6.00	22.00	6.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	34.00	2.00	2.00	19.00	9.00	2.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	34.00	2.00	0.00	9.00	18.00	5.00
...............................................................ACATAGTCGTACGGTGAATGTTG...............................................................................	23	1	33.00	3.00	0.00	8.00	22.00	0.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	33.00	3.00	0.00	4.00	18.00	8.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	1	31.00	1.00	0.00	4.00	26.00	0.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	31.00	7.00	0.00	13.00	9.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	31.00	2.00	0.00	11.00	17.00	1.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	30.00	1.00	1.00	4.00	3.00	21.00
.....................................................................................................TGTTAACTGAAAGACTGTGTCT..........................................	22	1	30.00	0.00	0.00	11.00	18.00	1.00
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	1	30.00	0.00	0.00	21.00	9.00	0.00
.....................................................................................................TGTTAACGGTAAGACTGTGTCT..........................................	22	1	29.00	0.00	1.00	1.00	27.00	0.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	29.00	4.00	1.00	10.00	13.00	1.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	29.00	1.00	0.00	11.00	14.00	3.00
.........................................................................................................AACTGTAAGACTGTGTCT..........................................	18	1	28.00	2.00	0.00	2.00	3.00	21.00
.....................................................................................................TGTTATCTGTAAGACTGTGTCT..........................................	22	1	28.00	0.00	0.00	22.00	6.00	0.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	27.00	0.00	1.00	8.00	11.00	7.00
.....................................................................................................TGTTAACTGTAAGACTGTGTGT..........................................	22	1	27.00	2.00	0.00	5.00	19.00	1.00
.....................................................................................................TGGTAAGTGTAAGACTGTGTCT..........................................	22	1	26.00	0.00	0.00	2.00	24.00	0.00
.....................................................................................................TGGTAACTGTAATACTGTGTCT..........................................	22	1	25.00	0.00	0.00	7.00	18.00	0.00
.....................................................................................................TGGTAACTGTAAGACTGGGTCT..........................................	22	1	24.00	0.00	0.00	2.00	22.00	0.00
.....................................................................................................TGTTAACTGTATGACTGTGTCT..........................................	22	1	24.00	5.00	3.00	6.00	10.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGACT..........................................	22	1	23.00	1.00	1.00	10.00	9.00	2.00
.....................................................................................................TGTTAACTGGGAGACTGTGTCT..........................................	22	1	23.00	1.00	0.00	3.00	19.00	0.00
.....................................................................................................TGTTAACTGTAATACTGTGTC...........................................	21	1	23.00	0.00	0.00	6.00	15.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGT..............................................	18	1	23.00	3.00	1.00	2.00	1.00	16.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	21.00	2.00	1.00	8.00	9.00	1.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	10.50	1.50	0.00	0.50	0.00	8.50
.....................................................................................................TGTTAACTGCGAGACTGTGTCT..........................................	22	1	21.00	0.00	0.00	4.00	17.00	0.00
.....................................................................................................TGATAACTGCAAGACTGTGTCT..........................................	22	1	21.00	0.00	0.00	4.00	17.00	0.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	20.00	0.00	0.00	5.00	15.00	0.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	19.00	1.00	0.00	9.00	6.00	3.00
.....................................................................................................TGTTAACTGTGAGACTGTGT............................................	20	1	18.00	4.00	0.00	7.00	7.00	0.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	1	17.00	2.00	1.00	5.00	2.00	7.00
.....................................................................................................TGTTAAGTGTAAGACTGTGTCT..........................................	22	1	17.00	0.00	0.00	3.00	14.00	0.00
.....................................................................................................TGGGAACTGTAAGACTGTGTCT..........................................	22	1	16.00	0.00	1.00	0.00	15.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGCGTCT..........................................	22	1	15.00	0.00	0.00	7.00	7.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGCC...........................................	21	1	15.00	1.00	0.00	6.00	7.00	1.00
.....................................................................................................TGGTAACTGTAAGGCTGTGTCT..........................................	22	1	15.00	0.00	0.00	1.00	14.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGC............................................	20	1	15.00	2.00	0.00	1.00	10.00	2.00
.....................................................................................................TGATAACTGTAAGACTGTGTC...........................................	21	1	14.00	0.00	0.00	2.00	12.00	0.00
.....................................................................................................TGGTAACTGAAAGACTGTGTCT..........................................	22	1	14.00	0.00	0.00	3.00	11.00	0.00

droWil1

GACGACG------ACGACGACGCCAACG-ACAGCAGCA-AAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----AAACAACA---------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	472968.00	7467.00	15994.00	94931.00	354576.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	31907.00	17.00	49.00	140.00	31701.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	17022.00	242.00	52.00	5023.00	11705.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	7079.00	4.00	30.00	86.00	6959.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	5894.00	3.00	12.00	118.00	5761.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCG..........................................	22	1	5759.00	2.00	3.00	6.00	5748.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	4880.00	107.00	179.00	625.00	3969.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	3719.00	8.00	17.00	122.00	3572.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	3213.00	11.00	21.00	134.00	3047.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	2723.00	4.00	3.00	69.00	2647.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	2375.00	4.00	17.00	113.00	2241.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	2018.00	3.00	26.00	88.00	1901.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	1858.00	45.00	237.00	1165.00	411.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	1391.00	2.00	17.00	63.00	1309.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	1332.00	16.00	23.00	243.00	1050.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	1190.00	15.00	32.00	187.00	956.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCC..........................................	22	1	1144.00	0.00	0.00	9.00	1135.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	1075.00	4.00	2.00	147.00	922.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	523.00	1.50	6.50	51.00	464.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	1024.00	16.00	84.00	149.00	775.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	799.00	22.00	345.00	327.00	105.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	748.00	19.00	24.00	334.00	371.00
.....................................................................................................TGTTAACTGTAATACTGTGTCC..........................................	22	1	673.00	0.00	0.00	0.00	673.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	661.00	4.00	2.00	109.00	546.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	628.00	11.00	22.00	154.00	441.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	535.00	8.00	19.00	182.00	326.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCC..........................................	22	1	506.00	0.00	0.00	0.00	506.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	500.00	77.00	61.00	310.00	52.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	488.00	14.00	21.00	196.00	257.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	488.00	12.00	13.00	106.00	357.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	487.00	7.00	22.00	296.00	162.00
.....................................................................................................TGTTAACTGTxATACTGTGTCT..........................................	21	1	485.00	0.00	3.00	8.00	474.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	473.00	9.00	31.00	96.00	337.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	455.00	10.00	7.00	49.00	389.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	443.00	10.00	22.00	155.00	256.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	429.00	0.00	20.00	311.00	98.00
...............................................................ACATAGTCGTACGGTGAATGTT................................................................................	22	1	419.00	4.00	122.00	105.00	188.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	376.00	5.00	15.00	92.00	264.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	363.00	2.00	8.00	142.00	211.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	347.00	10.00	21.00	150.00	166.00
.......................................................................................................TTAACTGTAAGACTGTGTCC..........................................	20	1	342.00	0.00	0.00	0.00	342.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	328.00	5.00	17.00	117.00	189.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	318.00	3.00	6.00	52.00	257.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	317.00	4.00	10.00	56.00	247.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	1	311.00	3.00	2.00	58.00	248.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	310.00	1.00	20.00	270.00	19.00
......................................................................................................TTTAACTGTAAGACTGTGTCC..........................................	21	1	297.00	1.00	0.00	0.00	296.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	295.00	6.00	13.00	93.00	183.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	287.00	5.00	13.00	99.00	170.00
.....................................................................................................TGTTAACTGTxACACTGTGTCT..........................................	21	1	275.00	0.00	1.00	3.00	271.00
.....................................................................................................TGTTAACTGTAAxACTGTGTCT..........................................	21	1	261.00	0.00	0.00	2.00	259.00
.....................................................................................................TGTTAACTGTAACACTGTGTCC..........................................	22	1	256.00	0.00	0.00	2.00	254.00
.....................................................................................................TGTTAACTGTAxxACTGTGTCT..........................................	20	1	252.00	0.00	2.00	10.00	240.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	244.00	4.00	9.00	116.00	115.00
.....................................................................................................TGTTAACTGTxAGACTGTGTCT..........................................	21	1	238.00	1.00	5.00	84.00	148.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	235.00	4.00	11.00	133.00	87.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	234.00	1.00	1.00	83.00	149.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	219.00	4.00	7.00	74.00	134.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCC..........................................	22	1	217.00	0.00	0.00	0.00	217.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	212.00	2.00	3.00	106.00	101.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	210.00	1.00	10.00	105.00	94.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCG..........................................	22	1	208.00	0.00	0.00	0.00	208.00
.........................................................................................................AACTGTAAGACTGTGTCT..........................................	18	1	199.00	3.00	5.00	48.00	143.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	185.00	10.00	12.00	74.00	89.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	176.00	3.00	5.00	128.00	40.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCC..........................................	22	1	167.00	0.00	0.00	0.00	167.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	157.00	2.00	3.00	102.00	50.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	142.00	2.00	2.00	6.00	132.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	139.00	0.00	5.00	69.00	65.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	138.00	3.00	2.00	9.00	124.00
.....................................................................................................TGTTAACTGTAATACTGTGTCG..........................................	22	1	137.00	0.00	0.00	0.00	137.00
.....................................................................................................TGTTAACTGAAAGACTGTGTCT..........................................	22	1	133.00	2.00	4.00	87.00	40.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCC..........................................	22	1	132.00	0.00	0.00	0.00	132.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	129.00	0.00	2.00	97.00	30.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	120.00	2.00	6.00	95.00	17.00
.....................................................................................................TGTTAACTxTAAGACTGTGTCT..........................................	21	1	119.00	1.00	0.00	0.00	118.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	117.00	2.00	0.00	13.00	102.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	113.00	0.00	5.00	81.00	27.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	112.00	1.00	8.00	26.00	77.00
.....................................................................................................TGTTAACxxTAAGACTGTGTCT..........................................	20	1	110.00	2.00	1.00	13.00	94.00
.....................................................................................................TGTTAACTGTAAGACTGTGACT..........................................	22	1	106.00	3.00	0.00	38.00	65.00
.....................................................................................................TGTTAACTGTATGACTGTGTCT..........................................	22	1	98.00	2.00	4.00	48.00	44.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	97.00	2.00	5.00	66.00	24.00
.....................................................................................................TGTAAACTGTAAGACTGTGTCT..........................................	22	1	95.00	1.00	3.00	28.00	63.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	94.00	1.00	9.00	46.00	38.00
.....................................................................................................TTTTAACTGTGAGACTGTGTCT..........................................	22	1	91.00	1.00	0.00	7.00	83.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCC..........................................	22	1	91.00	0.00	0.00	0.00	91.00
.....................................................................................................TGTTAACTGTAAGACTGTCC............................................	20	1	88.00	0.00	0.00	0.00	88.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCC..........................................	22	1	85.00	0.00	0.00	0.00	85.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	84.00	6.00	7.00	65.00	6.00
.....................................................................................................TTTTAACTGTAAGACTTTGTCT..........................................	22	1	81.00	0.00	0.00	0.00	81.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCC..........................................	23	1	80.00	0.00	1.00	0.00	79.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCG..........................................	22	1	79.00	0.00	0.00	0.00	79.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	1	77.00	4.00	8.00	59.00	6.00
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	1	71.00	0.00	4.00	63.00	4.00
.......................................................................................................TTAACTGTGAGACTGTGTCT..........................................	20	1	70.00	1.00	0.00	5.00	64.00
.....................................................................................................TGTTAACTGTGAGACTTTGTCT..........................................	22	1	65.00	0.00	1.00	4.00	60.00
.......................................................................................................TTAACTGTAAGACTGTGTCG..........................................	20	1	65.00	0.00	0.00	0.00	65.00
......................................................................................................TTTAACTGTGAGACTGTGTCT..........................................	21	1	62.00	2.00	0.00	6.00	54.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	62.00	0.00	0.00	16.00	46.00

droVir3

--------------------------------------------G--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCT----AATCAACA---------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	74049.00	4127.00	14395.00	3043.00	1453.00	51031.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	13297.00	505.00	3509.00	22.00	167.00	9094.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	6662.00	7.00	29.00	2.00	125.00	6499.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCG..........................................	22	1	1617.00	6.00	14.00	0.00	57.00	1540.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	1247.00	24.00	304.00	1.00	16.00	902.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	1187.00	64.00	246.00	10.00	24.00	843.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCC..........................................	22	1	1169.00	1.00	6.00	0.00	11.00	1151.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	1144.00	22.00	295.00	0.00	8.00	819.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	617.00	32.00	79.00	10.00	15.00	481.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	606.00	2.00	46.00	34.00	19.00	505.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	471.00	2.00	3.00	2.00	23.00	441.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	419.00	58.00	211.00	70.00	3.00	77.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	396.00	3.00	6.00	0.00	9.00	378.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	363.00	5.00	0.00	0.00	17.00	341.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	357.00	23.00	89.00	0.00	6.00	239.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	325.00	16.00	97.00	11.00	6.00	195.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCT..........................................	22	1	275.00	0.00	265.00	9.00	1.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCG..........................................	22	1	269.00	0.00	3.00	0.00	6.00	260.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	236.00	42.00	162.00	4.00	1.00	27.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	225.00	6.00	2.00	2.00	12.00	203.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	221.00	1.00	17.00	6.00	13.00	184.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	194.00	5.00	80.00	10.00	4.00	95.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	185.00	1.00	26.00	25.00	8.00	125.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	147.00	13.00	26.00	91.00	2.00	15.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	143.00	1.00	7.00	27.00	2.00	106.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	127.00	26.00	21.00	5.00	7.00	68.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	127.00	0.00	19.00	9.00	2.00	97.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCC..........................................	22	1	118.00	0.00	1.00	0.00	0.00	117.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	118.00	4.00	26.00	3.00	2.00	83.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	1	110.00	0.00	100.00	1.00	0.00	9.00
.....................................................................................................TGTTAACTGTAAGACTxTGTCT..........................................	21	2	53.00	0.50	0.00	0.00	1.50	51.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	106.00	1.00	77.00	5.00	1.00	22.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	105.00	1.00	18.00	0.00	1.00	85.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	95.00	3.00	27.00	5.00	3.00	57.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	93.00	3.00	41.00	12.00	1.00	36.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	87.00	6.00	3.00	0.00	1.00	77.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	84.00	12.00	29.00	7.00	0.00	36.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	83.00	2.00	26.00	5.00	0.00	50.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	79.00	1.00	18.00	28.00	3.00	29.00
.....................................................................................................TGTTAACTGTAATACTGTGTCC..........................................	22	1	75.00	0.00	1.00	0.00	4.00	70.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	70.00	2.00	35.00	6.00	2.00	25.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	67.00	2.00	21.00	9.00	2.00	33.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	61.00	1.00	18.00	8.00	1.00	33.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	60.00	1.00	14.00	4.00	0.00	41.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	60.00	0.00	50.00	8.00	0.00	2.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCC..........................................	23	1	59.00	0.00	0.00	0.00	2.00	57.00
.......................................................................................................TTAACTGTAAGACTGTGTCC..........................................	20	1	58.00	0.00	0.00	0.00	1.00	57.00
.....................................................................................................TGTTAACTGGGAGACTGTGTCT..........................................	22	1	57.00	1.00	47.00	1.00	0.00	8.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	53.00	1.00	40.00	6.00	0.00	6.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCC..........................................	22	1	52.00	0.00	0.00	0.00	2.00	50.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	50.00	7.00	9.00	2.00	1.00	31.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	48.00	8.00	19.00	5.00	0.00	16.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	1	46.00	0.00	38.00	1.00	0.00	7.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	46.00	3.00	14.00	3.00	1.00	25.00
.....................................................................................................TGTTAACTGTGAGGCTGTGTCT..........................................	22	1	44.00	0.00	11.00	0.00	2.00	31.00
.....................................................................................................TGGTAACTGTGAGACTGTGTCT..........................................	22	1	44.00	0.00	44.00	0.00	0.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGCCT..........................................	22	1	44.00	0.00	25.00	0.00	1.00	18.00
.....................................................................................................TTTTAACTGTGAGACTGTGTCT..........................................	22	1	43.00	0.00	1.00	0.00	1.00	41.00
.....................................................................................................TGTTAACTGCGAGACTGTGTCT..........................................	22	1	43.00	1.00	26.00	1.00	1.00	14.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	43.00	4.00	25.00	3.00	1.00	10.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	42.00	3.00	13.00	4.00	1.00	21.00
.....................................................................................................TGGTAACTGGAAGACTGTGTCT..........................................	22	1	41.00	0.00	39.00	2.00	0.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	40.00	6.00	19.00	5.00	1.00	9.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	1	39.00	8.00	7.00	19.00	0.00	5.00
.....................................................................................................TGTTAACTGTxATACTGTGTCT..........................................	21	1	38.00	0.00	0.00	0.00	0.00	38.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTAA........................................	24	1	38.00	2.00	3.00	33.00	0.00	0.00
.......................................................................................................TTAACTGTGAGACTGTGTCT..........................................	20	1	37.00	3.00	0.00	0.00	1.00	33.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	36.00	4.00	7.00	7.00	2.00	16.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	36.00	1.00	13.00	6.00	0.00	16.00
......................................................................................................TTTAACTGTAAGACTGTGTCC..........................................	21	1	36.00	0.00	0.00	0.00	0.00	36.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	34.00	2.00	18.00	1.00	0.00	13.00
.....................................................................................................TGTTGACTGTAGGACTGTGTCT..........................................	22	1	33.00	3.00	5.00	0.00	1.00	24.00
.....................................................................................................TGTTAGCTGTGAGACTGTGTCT..........................................	22	1	32.00	3.00	10.00	0.00	0.00	19.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	32.00	6.00	8.00	3.00	0.00	15.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCC..........................................	22	1	31.00	0.00	0.00	0.00	2.00	29.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	31.00	2.00	16.00	6.00	0.00	7.00
...............................................................ACATAGTCGTACGGTGAATGTT................................................................................	22	1	31.00	4.00	17.00	2.00	2.00	6.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	30.00	3.00	19.00	5.00	0.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	30.00	7.00	12.00	1.00	0.00	10.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	29.00	2.00	15.00	1.00	0.00	11.00
.....................................................................................................TGTTAACTGTAAGACTGTGACT..........................................	22	1	28.00	5.00	7.00	1.00	1.00	14.00
.....................................................................................................TGTTAACTGTAACACTGTGTCC..........................................	22	1	27.00	0.00	0.00	0.00	2.00	25.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCG..........................................	22	1	27.00	0.00	0.00	0.00	1.00	26.00
.....................................................................................................TGTTAACTGAAAGACTGTGTCT..........................................	22	1	27.00	3.00	10.00	2.00	0.00	12.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	27.00	2.00	11.00	8.00	0.00	6.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	26.00	2.00	15.00	9.00	0.00	0.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	26.00	1.00	5.00	1.00	1.00	18.00
.....................................................................................................TGTTAACTGTAATACTGTGTCG..........................................	22	1	26.00	0.00	0.00	0.00	1.00	25.00
.....................................................................................................TGTTAACTGTAxxACTGTGTCT..........................................	20	1	25.00	0.00	0.00	0.00	0.00	25.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	24.00	2.00	5.00	7.00	1.00	9.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	24.00	3.00	14.00	5.00	0.00	2.00
.....................................................................................................TGTTAACTGTGCGACTGTGTCT..........................................	22	1	24.00	0.00	7.00	0.00	0.00	17.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCC..........................................	22	1	23.00	0.00	0.00	0.00	0.00	23.00
.....................................................................................................TCTTAACTGTGAGACTGTGTCT..........................................	22	1	22.00	1.00	0.00	0.00	1.00	20.00
.....................................................................................................TGTTAACTGTGATACTGTGTCT..........................................	22	1	22.00	0.00	10.00	0.00	0.00	12.00
.....................................................................................................TGTTAACTGTxACACTGTGTCT..........................................	21	1	21.00	0.00	0.00	0.00	0.00	21.00
....................................................................................................ATGTTAACTGTGAGACTGTGTCT..........................................	23	1	21.00	0.00	6.00	0.00	0.00	15.00
......................................................................................................TTTAACTGTGAGACTGTGTCT..........................................	21	1	21.00	0.00	0.00	0.00	2.00	19.00
.....................................................................................................TGGTAACTGTAATACTGTGTCT..........................................	22	1	21.00	0.00	20.00	1.00	0.00	0.00
........................................................................................................TAACTGTAAGACTGTGTCT..........................................	19	1	21.00	0.00	1.00	0.00	1.00	19.00

droMoj3

ATTA--------AAAGG---------------GCAGTG-A-GTCG--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCC----AAACAACAGCGACC---------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	1	37802.00	6449.00	18663.00	10642.00	2048.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	1	3579.00	451.00	1878.00	1245.00	5.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	1	874.00	69.00	453.00	272.00	80.00
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	1	589.00	115.00	305.00	160.00	9.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	1	491.00	72.00	271.00	143.00	5.00
.....................................................................................................TGGTAACTGTAAGACTGTGTCT..........................................	22	1	398.00	2.00	251.00	133.00	12.00
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	1	304.00	28.00	180.00	95.00	1.00
.....................................................................................................TGTTAACTGTAATACTGTGTCT..........................................	22	1	178.00	7.00	62.00	105.00	4.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	1	176.00	38.00	46.00	36.00	56.00
.....................................................................................................TGTTGACTGTAAGACTGTGTCT..........................................	22	1	164.00	24.00	76.00	60.00	4.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	1	102.00	0.00	28.00	72.00	2.00
.....................................................................................................TGTTAACTGTAAGCCTGTGTCT..........................................	22	1	100.00	1.00	61.00	35.00	3.00
.....................................................................................................TGTTAACTGTGGGACTGTGTCT..........................................	22	1	99.00	9.00	57.00	33.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	1	95.00	30.00	37.00	20.00	8.00
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	1	94.00	37.00	27.00	19.00	11.00
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	1	91.00	3.00	54.00	30.00	4.00
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	1	87.00	3.00	71.00	12.00	1.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	1	83.00	1.00	68.00	14.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	1	83.00	4.00	29.00	49.00	1.00
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	1	81.00	3.00	45.00	27.00	6.00
...............................................................ACATAGTCGTACGGTGAATGTT................................................................................	22	1	80.00	24.00	27.00	17.00	12.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	1	76.00	16.00	38.00	18.00	4.00
.....................................................................................................TGTTAACTGTAAGGCTGTGTCT..........................................	22	1	73.00	5.00	30.00	32.00	6.00
.....................................................................................................TGTTAACTGGAAGACTGTGTCT..........................................	22	1	73.00	1.00	52.00	18.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	1	70.00	4.00	43.00	22.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	1	68.00	6.00	38.00	19.00	5.00
.....................................................................................................TGTTAACTGTCAGACTGTGTCT..........................................	22	1	68.00	0.00	16.00	50.00	2.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	1	67.00	8.00	16.00	43.00	0.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	1	65.00	5.00	40.00	19.00	1.00
.....................................................................................................TGGTAACTGGAAGACTGTGTCT..........................................	22	1	62.00	0.00	40.00	22.00	0.00
.....................................................................................................TGTTGACTGTGAGACTGTGTCT..........................................	22	1	58.00	5.00	32.00	21.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	1	53.00	10.00	26.00	15.00	2.00
.....................................................................................................TGTTAACTGTAAGTCTGTGTCT..........................................	22	1	52.00	4.00	37.00	10.00	1.00
.....................................................................................................TGTTAACTGTAAGACTTTGTCT..........................................	22	1	52.00	5.00	23.00	24.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTAT..........................................	22	1	50.00	5.00	20.00	18.00	7.00
.....................................................................................................TGTTAACTGTAAGACCGTGTCT..........................................	22	1	49.00	4.00	27.00	15.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	1	47.00	2.00	27.00	16.00	2.00
.....................................................................................................TGTTAACCGTAAGACTGTGTCT..........................................	22	1	44.00	3.00	23.00	16.00	2.00
.....................................................................................................TGTTAACTGTAAGAATGTGTCT..........................................	22	1	42.00	5.00	16.00	16.00	5.00
.....................................................................................................TGGTAACTGTAATACTGTGTCT..........................................	22	1	42.00	0.00	23.00	19.00	0.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	1	41.00	5.00	25.00	11.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTG.........................................	23	1	41.00	3.00	25.00	13.00	0.00
.....................................................................................................TGTTAACTGTAACACTGTGTCT..........................................	22	1	40.00	2.00	27.00	10.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	1	37.00	9.00	17.00	11.00	0.00
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	1	36.00	3.00	22.00	11.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTTT..........................................	22	1	35.00	3.00	23.00	7.00	2.00
.....................................................................................................TGGTAACTGTGAGACTGTGTCT..........................................	22	1	34.00	0.00	23.00	11.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGGCT..........................................	22	1	33.00	0.00	18.00	11.00	4.00
.....................................................................................................TGTTCACTGTAAGACTGTGTCT..........................................	22	1	33.00	1.00	18.00	14.00	0.00
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	1	33.00	2.00	13.00	17.00	1.00
.....................................................................................................TATTAACTGTAAGACTGTGTCT..........................................	22	1	31.00	1.00	14.00	14.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTATCT..........................................	22	1	31.00	2.00	14.00	14.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCA..........................................	22	1	31.00	5.00	16.00	8.00	2.00
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	1	30.00	5.00	10.00	12.00	3.00
.....................................................................................................TGTGAACTGTAAGACTGTGTCT..........................................	22	1	30.00	0.00	22.00	6.00	2.00
.....................................................................................................TGTTAACTGTAAGACTCTGTCT..........................................	22	1	28.00	2.00	15.00	11.00	0.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	1	28.00	2.00	10.00	14.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTAA........................................	24	1	27.00	9.00	2.00	0.00	16.00
..........................................TCG--CCGCTCAATTACCGTG......................................................................................................	19	1	26.00	0.00	6.00	6.00	14.00
.....................................................................................................TTTTAACTGTAAGACTGTGTCT..........................................	22	1	26.00	11.00	11.00	4.00	0.00
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	1	26.00	1.00	19.00	5.00	1.00
.....................................................................................................TGTTAACGGTAAGACTGTGTCT..........................................	22	1	24.00	0.00	21.00	2.00	1.00
.....................................................................................................TGTTAACTGTAAGACTGTG.............................................	19	1	23.00	1.00	14.00	7.00	1.00
....................................................................................................CTGTTAACTGTAAGACTGTGTCT..........................................	23	1	23.00	0.00	10.00	10.00	3.00
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	1	20.00	19.00	0.00	1.00	0.00
.....................................................................................................TGTTAACTGTTAGACTGTGTCT..........................................	22	1	20.00	2.00	6.00	10.00	2.00
.....................................................................................................AGTTAACTGTAAGACTGTGTCT..........................................	22	1	19.00	2.00	10.00	7.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	1	19.00	3.00	11.00	4.00	1.00
.....................................................................................................TGTTTACTGTAAGACTGTGTCT..........................................	22	1	19.00	1.00	6.00	11.00	1.00
.....................................................................................................TGTTAACTGTAAGATTGTGTCT..........................................	22	1	18.00	5.00	9.00	4.00	0.00
.....................................................................................................TGTTAACTGCGAGACTGTGTCT..........................................	22	1	18.00	0.00	13.00	5.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	1	18.00	1.00	15.00	2.00	0.00
.....................................................................................................TGTTAACTGTGCGACTGTGTCT..........................................	22	1	18.00	0.00	4.00	14.00	0.00
.....................................................................................................TGTTAACTGTATGACTGTGTCT..........................................	22	1	17.00	0.00	10.00	5.00	2.00
.....................................................................................................TGTTAACTGTGAGCCTGTGTCT..........................................	22	1	17.00	0.00	11.00	6.00	0.00
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	1	17.00	0.00	8.00	9.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGTC...........................................	21	1	16.00	4.00	8.00	4.00	0.00
.....................................................................................................TGTAAACTGTAAGACTGTGTCT..........................................	22	1	16.00	7.00	7.00	2.00	0.00
.....................................................................................................TGTTAACTGTAATACTTTGTCT..........................................	22	1	16.00	0.00	4.00	12.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCTT.........................................	23	1	14.00	0.00	12.00	2.00	0.00
.....................................................................................................TGTTAACTGGGAGACTGTGTCT..........................................	22	1	14.00	0.00	10.00	4.00	0.00
.......................................................................................................TTAACTGTAAGACTGTGTCT..........................................	20	1	14.00	7.00	4.00	3.00	0.00
.....................................................................................................TGTTAACTGTAAAACTGTGTCT..........................................	22	1	14.00	0.00	6.00	8.00	0.00
.....................................................................................................TGGTAACTGTAAGACTGGGTCT..........................................	22	1	13.00	0.00	6.00	7.00	0.00
.....................................................................................................GGTTAACTGTAAGACTGTGTCT..........................................	22	1	12.00	1.00	7.00	3.00	1.00
.....................................................................................................TGTTAACTGTACGCCTGTGTCT..........................................	22	1	12.00	0.00	4.00	7.00	1.00
.....................................................................................................TGCTAACTGTGAGACTGTGTCT..........................................	22	1	12.00	0.00	8.00	4.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGACT..........................................	22	1	12.00	1.00	9.00	2.00	0.00
.....................................................................................................TGATAACTGCAAGACTGTGTCT..........................................	22	1	11.00	0.00	7.00	4.00	0.00
.....................................................................................................TGTTAACTGTGATACTGTGTCT..........................................	22	1	11.00	1.00	3.00	7.00	0.00
.....................................................................................................TGTTAACTGTGAGACTGTTTCT..........................................	22	1	11.00	0.00	1.00	10.00	0.00
.....................................................................................................TGGTAACTGTACGACTGTGTCT..........................................	22	1	11.00	0.00	3.00	8.00	0.00
.....................................................................................................TGTTAGCTGTGAGACTGTGTCT..........................................	22	1	11.00	1.00	4.00	6.00	0.00
.....................................................................................................TGGTAAGTGTAAGACTGTGTCT..........................................	22	1	10.00	0.00	8.00	0.00	2.00
.....................................................................................................TGTTAATTGTGAGACTGTGTCT..........................................	22	1	10.00	2.00	7.00	1.00	0.00
.....................................................................................................TGTTAACTGTGAGACTTTGTCT..........................................	22	1	10.00	1.00	8.00	1.00	0.00
.....................................................................................................TGTTAACTGAAAGACTGTGTCT..........................................	22	1	10.00	1.00	8.00	1.00	0.00
.....................................................................................................TGTTAACTGTAAGACTGTGTGT..........................................	22	1	10.00	1.00	6.00	2.00	1.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	1	10.00	0.00	8.00	1.00	1.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCC..........................................	22	1	10.00	1.00	6.00	3.00	0.00
.....................................................................................................TCTTAACTGTAAGACTGTGTCT..........................................	22	1	10.00	2.00	5.00	3.00	0.00

droGri2

GATA----------AGGA----------C---AAGAGA-CAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCC----AAGCAACAA-A------------	Size	Hit Count	Total Norm	V109 Male body
.....................................................................................................TGTTAACTGTAAGACTGTGTCT..........................................	22	2	1152.50	1152.50
.....................................................................................................TGTTAACTGTAAGACTGTGTC...........................................	21	2	41.00	41.00
.....................................................................................................TGTTAACTGTGAGACTGTGTCT..........................................	22	2	40.00	40.00
.....................................................................................................TGTTAACTGTAAGACTGTGT............................................	20	2	35.00	35.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTT.........................................	23	2	16.50	16.50
.....................................................................................................TGTTAACTGTAAGACTGCGTCT..........................................	22	2	13.00	13.00
.....................................................................................................TGTTAACTGTAAGACTGAGTCT..........................................	22	2	13.00	13.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCC..........................................	22	2	6.00	6.00
.....................................................................................................TGTTAACTCTAAGACTGTGTCT..........................................	22	2	5.50	5.50
.....................................................................................................TGTTAAATGTAAGACTGTGTCT..........................................	22	2	5.00	5.00
.....................................................................................................TGTTAACTGTAAGACTGGGTCT..........................................	22	2	4.50	4.50
.....................................................................................................TGTTACCTGTAAGACTGTGTCT..........................................	22	2	4.50	4.50
.....................................................................................................TGTTAACTGTAAGACTGTGTCTA.........................................	23	2	4.50	4.50
......................................................................................................GTTAACTGTAAGACTGTGTCT..........................................	21	2	4.00	4.00
.....................................................................................................TGATAACTGTAAGACTGTGTCT..........................................	22	2	3.50	3.50
.....................................................................................................TGTTAACTATAAGACTGTGTCT..........................................	22	2	3.50	3.50
.....................................................................................................TGTTAACTGTAAGACTGTGCCT..........................................	22	2	3.50	3.50
......................................................................................................TTTAACTGTAAGACTGTGTCT..........................................	21	2	3.00	3.00
.....................................................................................................TGTTAGCTGTAAGACTGTGTCT..........................................	22	2	3.00	3.00
.....................................................................................................TGCTAACTGTAAGACTGTGTCT..........................................	22	2	3.00	3.00
.....................................................................................................TGTTAACTGTAAGACTGTGTCTTT........................................	24	2	3.00	3.00
.....................................................................................................TGTCAACTGTAAGACTGTGTCT..........................................	22	2	2.50	2.50
.....................................................................................................TGTTAACTGTAAGACTGTCTCT..........................................	22	2	2.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTCT............................................	20	2	2.00	2.00
.....................................................................................................TGTTATCTGTAAGACTGTGTCT..........................................	22	2	2.00	2.00
.....................................................................................................TGTTAACTGTAAGACTGTTTCT..........................................	22	2	2.00	2.00
.....................................................................................................TGTTAACTGTACGACTGTGTCT..........................................	22	2	2.00	2.00
.....................................................................................................TGTTAACTTTAAGACTGTGTCT..........................................	22	2	2.00	2.00
....................................................................................................ATGTTAACTGTAAGACTGTGTCT..........................................	23	2	2.00	2.00
.....................................................................................................TGTTAAGTGTAAGACTGTGTCT..........................................	22	2	1.50	1.50
.....................................................................................................TGTTAACTGTGAGACTGAGTCT..........................................	22	2	1.50	1.50
...............................................................ACATAGTCGTACGGTGAATGTTG...............................................................................	23	2	1.50	1.50
.....................................................................................................TGTTAACTGTAAGACTATGTCT..........................................	22	2	1.50	1.50
.....................................................................................................TGTTAACTGTAGGACTGTGTCT..........................................	22	2	1.50	1.50
.....................................................................................................TGTTAACTGCAAGACTGTGTCT..........................................	22	2	1.50	1.50
.....................................................................................................TGTTAACTGTAAGACTGTGTCTC.........................................	23	2	1.50	1.50
.....................................................................................................CGTTAACTGTAAGACTGTGTCT..........................................	22	2	1.50	1.50
.....................................................................................................TGTTAATTGTAAGACTGTGTCT..........................................	22	2	1.50	1.50

Generated: 04/20/2012 at 05:18:23 EDT

dme-mir-999

chr3R:17623949-17624053 -

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup