dme-mir-999- 12- and 20-way alignments

dme-mir-999	chr3R:17623949-17624053 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 17623971-17623992
   star strand at position 17624009-17624030
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:17623934-17624068 -	G----ATGAAC---GGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCC----AGCCACACAGCC-CAGTATCAA----
droSim1	chr3R:17429586-17429720 -	G----ATGAAC---GGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCC----AGCCACACAGCC-CAGTATCAA----
droSec1	super_0:17996302-17996436 -	G----ATGAAC---GGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCC----AGCCACACAGCC-CAGTATCAA----
droYak2	Unknown	A----A---AT---CGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACACAGCT-CAGTATCG-----
droEre2	scaffold_4820:10463202-10463313 +	G----ATGAAC---GAAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCgg----tGggtgtgtGgg-CAGTATCA-----
droAna3	scaffold_13340:8622510-8622629 -	G----CCAAAG---GACCAAAAAA-GGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGggtGgTt----GggTtg--------------------
dp4	chr2:6480711-6480794 -	-------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCA----AGCAGCA-AGCC--------------
droPer1	super_0:306011-306139 -	AGGAGATG--TGAAGGAGCCCAAA-GGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCA----AGCAGCA-AGCC--------------
droWil1	scaffold_181130:11672712-11672833 -	G----ggttgG---tgAGCAGCAA-AGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCA----AACAACA-------------------
droVir3	scaffold_12822:3936742-3936840 -	G-------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCTA----ATCAACA-------------------
droMoj3	scaffold_6540:17209647-17209763 -	A----TTAAAA---GG-GCAGTGA--GTCG--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCCA----AACAACA-------------------
droGri2	Unknown	G----ATA--A---GGACAAGAGACAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCCA----AGCAACACA-CCCAA--AACGAAAGC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:17623934-17624068 -	NA	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droSim1	chr3R:17429586-17429720 -	83	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droSec1	super_0:17996302-17996436 -	103	GATG--------AACGGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACAC-AGCCCAGTATCAA
droYak2	chr3R:18443923-18444058 -	79	AA-----------ATCGA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACATCAGCC--ACATCGG
droEre2	scaffold_4820:10463202-10463335 +	64	GATG--------AACGAA--------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCCACACCAGCC--ACACCAG
droEug1	scf7180000409490:921819-921951 -	137	CATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCTGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAATAACAATGTATCAA
droBia1	scf7180000302402:6491258-6491371 +	32	A-------------C-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACA---------------
droTak1	scf7180000415711:1522743-1522870 +	25	-ACG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----CAGCAACAA-A----AGTACCAA
droEle1	scf7180000491212:2051752-2051875 -	369	AACG--------AACGA-----------T--AGAAGAAAAGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGCTTGCCAGCC----AGC----------CCAGCA----
droRho1	scf7180000767859:959-1086 +	2	GATG--------AAC-----------------GAAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACAC-AATC--GTATC--
droFic1	scf7180000454106:760371-760511 -	68	AGTA------G-AAAGGA----------GAGAGGAGAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CATCAACAATGGCCCAGCATTAG
droKik1	scf7180000302388:1458252-1458384 +	18	GTCG--------CAG-----------------GAATAA-AGGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----CAGCAACATGAAGCAAGTGGAGA
droAna3	scaffold_13340:8622498-8622632 -	112	GTTG------CCAAAGGA----------C---CAAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCTCACTATC--
droBip1	scf7180000396708:225011-225151 +	17	GTTGTCGTTGCCAAAGGA----------C---CTAAAA-AGGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCT----AGCCTACC--ATCCCACTATC--
dp4	chr2:6480711-6480794 -	62	----------------------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCAA--GCC---------
droPer1	super_0:306015-306135 -	76	GATG------T-GAAGGA--------------GCCCAA-AGGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCC----AAGCAGCA---------------
droWil1	scaffold_181130:11672712-11672848 -	713	GACGACG------ACGACGACGCCAACG-ACAGCAGCA-AAGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCC----AAACAACA---------------
droVir3	scaffold_12822:3936742-3936840 -	849	--------------------------------------------G--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCT----AATCAACA---------------
droMoj3	scaffold_6540:17209641-17209764 -	2301	ATTA--------AAAGG---------------GCAGTG-A-GTCG--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCC----AAACAACAGCGACC---------
droGri2	scaffold_8129:786-906 -	985	GATA----------AGGA----------C---AAGAGA-CAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCC----AAGCAACAA-A------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

G----ATGAAC---GGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCC----AGCCACACAGCC-CAGTATCAA----

Size

Hit Count

Total Norm

droSim1

G----ATGAAC---GGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCC----AGCCACACAGCC-CAGTATCAA----	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	562142.00	1276.00	510817.00	19930.00	30119.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	68992.00	3.00	63787.00	1912.00	3290.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	30749.00	10.00	29571.00	1045.00	123.00
......................................................................................TGTTAACTGTAAGACTGTGTCG..............................................	22	1	12607.00	1.00	10906.00	665.00	1035.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	9924.00	9.00	9156.00	361.00	398.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	7244.00	0.00	6635.00	196.00	413.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	6069.00	0.00	5498.00	135.00	436.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	4489.00	0.00	4126.00	80.00	283.00
......................................................................................TGTTAACTGTGAGACTGTGTCC..............................................	22	1	3911.00	0.00	3797.00	101.00	13.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	3514.00	0.00	3228.00	76.00	210.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	3347.00	15.00	2957.00	122.00	253.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	3206.00	0.00	2903.00	69.00	234.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	3000.00	0.00	2745.00	74.00	181.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	2071.00	1.00	1965.00	82.00	23.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	1731.00	1.00	1569.00	30.00	131.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	1249.00	2.00	1120.00	40.00	87.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	505.00	0.00	452.50	15.00	37.50
......................................................................................TGTTAACTGTAATACTGTGTCC..............................................	22	1	1004.00	0.00	950.00	10.00	44.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	966.00	0.00	858.00	33.00	75.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	899.00	0.00	869.00	17.00	13.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	759.00	0.00	702.00	27.00	30.00
......................................................................................TTTTAACTGTAAGACTGTGTCC..............................................	22	1	744.00	0.00	685.00	18.00	41.00
......................................................................................TGTTAACTGTGAGACTGTGTCG..............................................	22	1	707.00	0.00	676.00	25.00	6.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	701.00	8.00	538.00	75.00	80.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	688.00	2.00	623.00	27.00	36.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	642.00	1.00	589.00	24.00	28.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	621.00	21.00	531.00	55.00	14.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	565.00	0.00	541.00	19.00	5.00
........................................................................................TTAACTGTAAGACTGTGTCC..............................................	20	1	554.00	0.00	503.00	14.00	37.00
......................................................................................TGTTAACTGTxATACTGTGTCT..............................................	21	1	501.00	0.00	460.00	16.00	25.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	494.00	0.00	435.00	15.00	44.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	467.00	7.00	429.00	10.00	21.00
.......................................................................................TTTAACTGTAAGACTGTGTCC..............................................	21	1	446.00	0.00	413.00	12.00	21.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	437.00	43.00	294.00	43.00	57.00
......................................................................................TGTTAACTGTAACACTGTGTCC..............................................	22	1	416.00	0.00	383.00	8.00	25.00
......................................................................................TGTTAACTGTxACACTGTGTCT..............................................	21	1	411.00	0.00	374.00	10.00	27.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	401.00	0.00	367.00	5.00	29.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCC..............................................	23	1	383.00	0.00	354.00	5.00	24.00
......................................................................................TCTTAACTGTAAGACTGTGTCC..............................................	22	1	379.00	0.00	343.00	11.00	25.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	371.00	2.00	339.00	15.00	15.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	371.00	0.00	327.00	18.00	26.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	342.00	2.00	331.00	9.00	0.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	335.00	1.00	304.00	16.00	14.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	332.00	3.00	303.00	13.00	13.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	325.00	0.00	295.00	10.00	20.00
......................................................................................TGTTAACTGTAAxACTGTGTCT..............................................	21	1	321.00	0.00	295.00	9.00	17.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	310.00	0.00	299.00	11.00	0.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	309.00	0.00	300.00	9.00	0.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	309.00	2.00	280.00	16.00	11.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	307.00	0.00	290.00	3.00	14.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	292.00	2.00	263.00	7.00	20.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	283.00	0.00	254.00	6.00	23.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	276.00	2.00	248.00	6.00	20.00
......................................................................................TGTTAACTGTAxxACTGTGTCT..............................................	20	1	272.00	0.00	248.00	7.00	17.00
......................................................................................TGTTAACTGTAGGACTGTGTCC..............................................	22	1	244.00	0.00	238.00	2.00	4.00
..........................................................................................AACTGTAAGACTGTGTCT..............................................	18	1	242.00	0.00	231.00	6.00	5.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	208.00	1.00	182.00	7.00	18.00
......................................................................................TGTTAACTGTxAGACTGTGTCT..............................................	21	1	203.00	0.00	190.00	7.00	6.00
......................................................................................TGTTAACTGTAATACTGTGTCG..............................................	22	1	195.00	0.00	172.00	7.00	16.00
......................................................................................TGTTAACTGTAAGACTTTGTCC..............................................	22	1	175.00	0.00	153.00	7.00	15.00
......................................................................................TTTTAACTGTGAGACTGTGTCT..............................................	22	1	170.00	0.00	164.00	3.00	3.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	168.00	0.00	149.00	4.00	15.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	163.00	1.00	155.00	5.00	2.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	162.00	1.00	150.00	6.00	5.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	161.00	2.00	136.00	10.00	13.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	161.00	5.00	130.00	13.00	13.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	151.00	0.00	139.00	1.00	11.00
......................................................................................TTTTAACTGTAAGACTGTGTCG..............................................	22	1	145.00	0.00	127.00	5.00	13.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	145.00	0.00	129.00	3.00	13.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	144.00	2.00	128.00	6.00	8.00
......................................................................................TGTTAACTTTAAGACTGTGTCC..............................................	22	1	142.00	0.00	128.00	8.00	6.00
................................................ACATAGTCGTACGGTGAATGTT....................................................................................	22	1	133.00	5.00	94.00	6.00	28.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	128.00	3.00	114.00	7.00	4.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	125.00	3.00	117.00	2.00	3.00
......................................................................................TGTTAACTGTAAGACTGTCC................................................	20	1	122.00	0.00	115.00	0.00	7.00
......................................................................................TGTTGACTGTAAGACTGTGTCC..............................................	22	1	116.00	0.00	113.00	2.00	1.00
......................................................................................TGTTAACTxTAAGACTGTGTCT..............................................	21	1	111.00	0.00	94.00	6.00	11.00
......................................................................................TGTTAACTGTAAGGCTGTGTCC..............................................	22	1	107.00	0.00	99.00	1.00	7.00
......................................................................................TGTTAACTGTAAGACTGTGAC...............................................	21	1	107.00	0.00	103.00	2.00	2.00
........................................................................................TTAACTGTGAGACTGTGTCT..............................................	20	1	107.00	0.00	104.00	1.00	2.00
......................................................................................TCTTAACTGTGAGACTGTGTCT..............................................	22	1	103.00	0.00	98.00	5.00	0.00
.......................................................................................GTTAACTGTAAGACTGTGTCC..............................................	21	1	102.00	0.00	83.00	11.00	8.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	102.00	2.00	83.00	6.00	11.00
......................................................................................TGTTAACTGTGAGACTTTGTCT..............................................	22	1	101.00	0.00	98.00	2.00	1.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	100.00	1.00	80.00	10.00	9.00
.......................................................................................TTTAACTGTGAGACTGTGTCT..............................................	21	1	98.00	0.00	97.00	1.00	0.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	96.00	1.00	89.00	4.00	2.00
........................................................................................TTAACTGTAAGACTGTGTCG..............................................	20	1	93.00	0.00	85.00	4.00	4.00
......................................................................................TGTTAACTGTAAGACTGT..................................................	18	1	93.00	0.00	81.00	8.00	4.00
.......................................................................................TTTAACTGTAAGACTGTGTCG..............................................	21	1	92.00	0.00	80.00	2.00	10.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	91.00	1.00	82.00	4.00	4.00
......................................................................................TGTAAACTGTAAGACTGTGTCT..............................................	22	1	91.00	1.00	84.00	1.00	5.00
......................................................................................TGTTAACTGTAACACTGTGTCG..............................................	22	1	88.00	0.00	75.00	3.00	10.00
......................................................................................TGTTAACxxTAAGACTGTGTCT..............................................	20	1	88.00	0.00	80.00	1.00	7.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	82.00	1.00	70.00	5.00	6.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	79.00	0.00	69.00	2.00	8.00
......................................................................................TGTTAACTGTGATACTGTGTCT..............................................	22	1	77.00	0.00	72.00	3.00	2.00
.......................................................................................TGTAACTGTAAGACTGTGTCT..............................................	21	1	75.00	0.00	73.00	1.00	1.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCG..............................................	23	1	71.00	0.00	59.00	3.00	9.00
......................................................................................TGTTAACTGTAAGACTGGGTCC..............................................	22	1	69.00	0.00	63.00	3.00	3.00

droSec1

G----ATGAAC---GGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCC----AGCCACACAGCC-CAGTATCAA----	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	92271.00	12625.00	9147.00	70499.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	12482.00	1057.00	129.00	11296.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	1639.00	180.00	23.00	1436.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	1455.00	183.00	86.00	1186.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	1397.00	259.00	103.00	1035.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	1271.00	164.00	115.00	992.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	983.00	117.00	26.00	840.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	830.00	60.00	7.00	763.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	661.00	170.00	42.00	449.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	520.00	176.00	51.00	293.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	345.00	82.00	36.00	227.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	251.00	27.00	10.00	214.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	222.00	20.00	32.00	170.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	176.00	76.00	4.00	96.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	169.00	81.00	15.00	73.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	161.00	80.00	8.00	73.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	151.00	13.00	0.00	138.00
......................................................................................TGTTAACTGTAGGACTGTGTC...............................................	21	1	146.00	9.00	1.00	136.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	123.00	12.00	10.00	101.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	119.00	13.00	23.00	83.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	116.00	6.00	2.00	108.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	111.00	17.00	12.00	82.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	105.00	10.00	8.00	87.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	52.50	4.50	6.50	41.50
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	99.00	14.00	10.00	75.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	97.00	10.00	14.00	73.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	96.00	9.00	11.00	76.00
......................................................................................TGTTAACTGTAAGACTGTGACT..............................................	22	1	93.00	3.00	3.00	87.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	93.00	12.00	2.00	79.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	91.00	16.00	12.00	63.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	91.00	11.00	11.00	69.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	90.00	13.00	11.00	66.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	90.00	8.00	7.00	75.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	80.00	13.00	12.00	55.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	79.00	9.00	6.00	64.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	75.00	6.00	6.00	63.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	73.00	13.00	10.00	50.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	72.00	7.00	13.00	52.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	69.00	2.00	4.00	63.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	67.00	12.00	8.00	47.00
......................................................................................TGTTAACTGTxAGACTGTGTCT..............................................	21	1	64.00	5.00	29.00	30.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	61.00	5.00	34.00	22.00
......................................................................................TGTTAACTGAAAGACTGTGTCT..............................................	22	1	61.00	4.00	2.00	55.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	60.00	8.00	19.00	33.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	59.00	10.00	8.00	41.00
................................................ACATAGTCATACGGTGAATGTT....................................................................................	22	1	58.00	1.00	40.00	17.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	58.00	7.00	15.00	36.00
.....................................................................................ATGTTAACTGTGAGACTGTGTCT..............................................	23	1	56.00	4.00	1.00	51.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	56.00	3.00	2.00	51.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	53.00	17.00	3.00	33.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	53.00	7.00	2.00	44.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	52.00	2.00	6.00	44.00
......................................................................................TGTTAACTGTGAGACTGTGT................................................	20	1	51.00	3.00	0.00	48.00
......................................................................................TGTTAACAGTAAGACTGTGTCT..............................................	22	1	50.00	0.00	1.00	49.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	48.00	9.00	2.00	37.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	48.00	2.00	4.00	42.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	47.00	3.00	4.00	40.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	46.00	7.00	5.00	34.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	43.00	3.00	5.00	35.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	42.00	7.00	8.00	27.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	42.00	9.00	2.00	31.00
.....................................................................................ATGTTAACTGTAAGACTGTGT................................................	21	1	40.00	5.00	1.00	34.00
......................................................................................TGTTAACTGTAGGACTGTGT................................................	20	1	40.00	5.00	0.00	35.00
......................................................................................TGTAAACTGTAAGACTGTGTCT..............................................	22	1	39.00	2.00	4.00	33.00
......................................................................................TGTTAACTGTTAGACTGTGTCT..............................................	22	1	39.00	1.00	18.00	20.00
......................................................................................TGTTAACTGTAAGACTGTGTCTAA............................................	24	1	38.00	10.00	11.00	17.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	38.00	7.00	7.00	24.00
......................................................................................TGTTAACTGTATGACTGTGTCT..............................................	22	1	38.00	6.00	16.00	16.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	37.00	2.00	0.00	35.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	36.00	7.00	6.00	23.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	35.00	6.00	4.00	25.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	32.00	3.00	6.00	23.00
................................................ACATAGTCATACGGTGAATGTTG...................................................................................	23	1	31.00	3.00	11.00	17.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	30.00	2.00	10.00	18.00
.....................................................................................ATGTTAACTGTAAGACTGTGTC...............................................	22	1	29.00	6.00	1.00	22.00
......................................................................................TGTTAACTGTGAGACTGTCT................................................	20	1	29.00	3.00	1.00	25.00
......................................................................................TGTTGACTGTAGGACTGTGTCT..............................................	22	1	27.00	2.00	0.00	25.00
................................................ACATAGTCATACGGTGAATGT.....................................................................................	21	1	27.00	5.00	2.00	20.00
......................................................................................TGTTAACTGCGAGACTGTGTCT..............................................	22	1	26.00	3.00	0.00	23.00
......................................................................................TGTTAACTGTGAGACTGTCTCT..............................................	22	1	26.00	8.00	0.00	18.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	25.00	0.00	1.00	24.00
......................................................................................TGTTAACTGTAAGACTGTGTCTC.............................................	23	1	24.00	6.00	5.00	13.00
......................................................................................TGTTAACTGTGAGACTGTTTCT..............................................	22	1	22.00	9.00	0.00	13.00
......................................................................................TGTTAACTGTGGGACTGTGTC...............................................	21	1	21.00	0.00	0.00	21.00
......................................................................................TGTTAACTGTAAGACTGTG.................................................	19	1	21.00	1.00	0.00	20.00
......................................................................................TGTTAACTGTGAGACTGTGTAT..............................................	22	1	20.00	0.00	0.00	20.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	20.00	3.00	5.00	12.00
......................................................................................TGTTACCTGTAAGACTGTGTCT..............................................	22	1	19.00	3.00	3.00	13.00
......................................................................................TGTTAACTGTGAGACTGTGTCC..............................................	22	1	19.00	3.00	0.00	16.00
......................................................................................TGTTAACTGTGAGACTGTGACT..............................................	22	1	18.00	0.00	0.00	18.00
......................................................................................TGTTAACTGTGAGACTGTATCT..............................................	22	1	18.00	5.00	0.00	13.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	17.00	3.00	5.00	9.00
......................................................................................TGTTAACTGTGAGGCTGTGTCT..............................................	22	1	17.00	2.00	0.00	15.00
......................................................................................TGTTAACCGTGAGACTGTGTCT..............................................	22	1	16.00	2.00	0.00	14.00
......................................................................................TTTTAACTGTGAGACTGTGTCT..............................................	22	1	16.00	0.00	1.00	15.00
.......................................................................................TTTAACTGTGAGACTGTGTCT..............................................	21	1	16.00	0.00	0.00	16.00
......................................................................................TGTTAACTGxxAGACTGTGTCT..............................................	20	1	15.00	2.00	1.00	12.00
.....................................................................................ATGTTAACTGTAGGACTGTGTCT..............................................	23	1	15.00	1.00	0.00	14.00
......................................................................................TGTTAGCTGTGAGACTGTGTCT..............................................	22	1	15.00	4.00	1.00	10.00
......................................................................................TGTTAACTGTAAGACAGTGTCT..............................................	22	1	15.00	0.00	6.00	9.00

droYak2

A----A---AT---CGAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCACACCAGCCACACAGCT-CAGTATCG-----	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	141347.00	1600.00	9424.00	7398.00	21832.00	101093.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	18776.00	11.00	1314.00	513.00	2889.00	14049.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	14491.00	5.00	15.00	16.00	35.00	14420.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	2597.00	15.00	113.00	70.00	323.00	2076.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	2536.00	1.00	152.00	31.00	321.00	2031.00
......................................................................................TGTTAACTGTAAGACTGTGTCG..............................................	22	1	2407.00	1.00	4.00	2.00	9.00	2391.00
......................................................................................TGTTAACTGTGAGACTGTGTCC..............................................	22	1	2088.00	0.00	1.00	1.00	3.00	2083.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	2076.00	4.00	110.00	80.00	328.00	1554.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	2002.00	2.00	96.00	1.00	149.00	1754.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	1957.00	0.00	118.00	51.00	290.00	1498.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	1520.00	0.00	2.00	7.00	13.00	1498.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	959.00	2.00	2.00	12.00	4.00	939.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	890.00	0.00	0.00	11.00	1.00	878.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	707.00	0.00	5.00	7.00	11.00	684.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	699.00	36.00	93.00	108.00	276.00	186.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	685.00	0.00	4.00	5.00	18.00	658.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	526.00	0.00	21.00	1.00	60.00	444.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	510.00	4.00	19.00	1.00	126.00	360.00
......................................................................................TGGTAACTGTAAGACTGTGTCT..............................................	22	1	499.00	7.00	95.00	1.00	392.00	4.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	409.00	1.00	29.00	4.00	46.00	329.00
......................................................................................TGTTAACTGTGAGACTGTGTCG..............................................	22	1	370.00	0.00	0.00	0.00	1.00	369.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	333.00	9.00	12.00	46.00	61.00	205.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCC..............................................	23	1	296.00	0.00	0.00	0.00	0.00	296.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	295.00	5.00	48.00	10.00	71.00	161.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	283.00	2.00	64.00	27.00	162.00	28.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	259.00	0.00	25.00	5.00	52.00	177.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	129.50	0.00	0.00	2.00	0.50	127.00
......................................................................................TGTTAACTGTAATACTGTGTCC..............................................	22	1	250.00	0.00	0.00	0.00	1.00	249.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	235.00	2.00	4.00	20.00	13.00	196.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	232.00	1.00	40.00	3.00	109.00	79.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	228.00	3.00	14.00	7.00	57.00	147.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	227.00	2.00	11.00	14.00	54.00	146.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	223.00	24.00	32.00	31.00	59.00	77.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	194.00	2.00	10.00	9.00	48.00	125.00
......................................................................................TTTTAACTGTAAGACTGTGTCC..............................................	22	1	187.00	0.00	0.00	0.00	0.00	187.00
......................................................................................TGTTAACTGTAGGACTGTGTCC..............................................	22	1	187.00	0.00	0.00	0.00	0.00	187.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	170.00	6.00	12.00	6.00	68.00	78.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	162.00	1.00	9.00	1.00	143.00	8.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	152.00	2.00	9.00	8.00	64.00	69.00
........................................................................................TTAACTGTAAGACTGTGTCC..............................................	20	1	140.00	0.00	0.00	0.00	0.00	140.00
.......................................................................................TTTAACTGTAAGACTGTGTCC..............................................	21	1	136.00	0.00	0.00	0.00	0.00	136.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	132.00	0.00	4.00	2.00	13.00	113.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	126.00	1.00	3.00	5.00	20.00	97.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	120.00	3.00	13.00	11.00	38.00	55.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	117.00	2.00	6.00	3.00	26.00	80.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	116.00	0.00	3.00	4.00	9.00	100.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	115.00	1.00	14.00	7.00	47.00	46.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	109.00	1.00	13.00	3.00	66.00	26.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	109.00	7.00	11.00	6.00	85.00	0.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	107.00	2.00	9.00	8.00	19.00	69.00
......................................................................................TGTTAACTGTAACACTGTGTCC..............................................	22	1	106.00	0.00	0.00	0.00	0.00	106.00
.....................................................................................ATGTTAACTGTGAGACTGTGTCT..............................................	23	1	103.00	0.00	7.00	3.00	16.00	77.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	100.00	0.00	8.00	3.00	14.00	75.00
......................................................................................TTTTAACTGTGAGACTGTGTCT..............................................	22	1	100.00	0.00	1.00	1.00	3.00	95.00
......................................................................................TGTTAACTGTxATACTGTGTCT..............................................	21	1	99.00	0.00	0.00	0.00	0.00	99.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	98.00	0.00	13.00	0.00	76.00	9.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	93.00	2.00	14.00	4.00	21.00	52.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	88.00	4.00	10.00	2.00	50.00	22.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	84.00	3.00	6.00	2.00	42.00	31.00
......................................................................................TGTTAACTGTAAGACTGTGTCTC.............................................	23	1	84.00	9.00	13.00	3.00	24.00	35.00
......................................................................................TGTTAACTGTxACACTGTGTCT..............................................	21	1	84.00	0.00	0.00	0.00	0.00	84.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	82.00	0.00	4.00	9.00	18.00	51.00
......................................................................................TGGTAACTGTGAGACTGTGTCT..............................................	22	1	82.00	0.00	19.00	0.00	62.00	1.00
......................................................................................TCTTAACTGTAAGACTGTGTCC..............................................	22	1	81.00	0.00	0.00	0.00	0.00	81.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	81.00	1.00	10.00	0.00	25.00	45.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	74.00	0.00	12.00	5.00	16.00	41.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	73.00	0.00	11.00	1.00	23.00	38.00
......................................................................................TGTTAACTGTAAxACTGTGTCT..............................................	21	1	72.00	0.00	0.00	0.00	0.00	72.00
......................................................................................TGTTAACTGTGCGACTGTGTCT..............................................	22	1	67.00	0.00	6.00	0.00	10.00	51.00
......................................................................................TGTTAACTGTGATACTGTGTCT..............................................	22	1	66.00	0.00	11.00	0.00	9.00	46.00
......................................................................................TGTTAACTGTGAGGCTGTGTCT..............................................	22	1	64.00	0.00	2.00	1.00	15.00	46.00
......................................................................................TGTTAACTGTAxxACTGTGTCT..............................................	20	1	63.00	0.00	0.00	0.00	0.00	63.00
......................................................................................TGTTAACTGTxAGACTGTGTCT..............................................	21	1	63.00	1.00	2.00	2.00	3.00	55.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	62.00	1.00	7.00	5.00	27.00	22.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	61.00	1.00	5.00	3.00	14.00	38.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	61.00	1.00	6.00	1.00	10.00	43.00
......................................................................................TGGTAACTGGAAGACTGTGTCT..............................................	22	1	60.00	0.00	12.00	0.00	48.00	0.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	60.00	0.00	0.00	1.00	2.00	57.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	60.00	0.00	6.00	0.00	38.00	16.00
......................................................................................TGTTAACTGTAATACTGTGTCG..............................................	22	1	58.00	0.00	0.00	0.00	0.00	58.00
......................................................................................TGTTAACTGTGAGACTTTGTCT..............................................	22	1	57.00	0.00	3.00	0.00	3.00	51.00
........................................................................................TTAACTGTGAGACTGTGTCT..............................................	20	1	56.00	0.00	0.00	0.00	1.00	55.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	55.00	6.00	12.00	1.00	26.00	10.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	54.00	3.00	10.00	1.00	37.00	3.00
......................................................................................TGTTAACTTTAAGACTGTGTCC..............................................	22	1	50.00	0.00	0.00	0.00	0.00	50.00
......................................................................................TGTGAACTGTAAGACTGTGTCT..............................................	22	1	50.00	1.00	4.00	1.00	43.00	1.00
.....................................................................................ATGTTAACTGTAAGACTGTGTC...............................................	22	1	50.00	0.00	2.00	1.00	6.00	41.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	49.00	1.00	1.00	3.00	11.00	33.00
......................................................................................TGTTAACTGTAAGACTTTGTCC..............................................	22	1	49.00	0.00	0.00	0.00	0.00	49.00
......................................................................................TGTTAACTGTACGACTGTGTCC..............................................	22	1	48.00	0.00	0.00	0.00	0.00	48.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCG..............................................	23	1	47.00	0.00	0.00	0.00	0.00	47.00
......................................................................................TCTTAACTGTGAGACTGTGTCT..............................................	22	1	45.00	0.00	0.00	1.00	2.00	42.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	45.00	1.00	3.00	1.00	21.00	19.00
.......................................................................................TTTAACTGTGAGACTGTGTCT..............................................	21	1	44.00	0.00	0.00	1.00	0.00	43.00
.....................................................................................ATGTTAACTGTGGGACTGTGTCT..............................................	23	1	44.00	0.00	1.00	0.00	2.00	41.00
......................................................................................TGTTAACTxTAAGACTGTGTCT..............................................	21	1	44.00	0.00	0.00	0.00	0.00	44.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	43.00	1.00	8.00	2.00	13.00	19.00
......................................................................................TGTTAACTTTGAGACTGTGTCT..............................................	22	1	43.00	1.00	9.00	0.00	15.00	18.00
..........................................................................................AACTGTAAGACTGTGTCT..............................................	18	1	41.00	0.00	4.00	0.00	2.00	35.00
......................................................................................TGTTAACGGTAAGACTGTGTCT..............................................	22	1	41.00	1.00	2.00	0.00	33.00	5.00

droEre2

G----ATGAAC---GAAGAAGAAA-GGATG--CCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCgg----tGggtgtgtGgg-CAGTATCA-----	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	106591.00	2745.00	14806.00	3043.00	85997.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	8852.00	13.00	729.00	22.00	8088.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	1933.00	21.00	125.00	10.00	1777.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	1534.00	18.00	213.00	10.00	1293.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	1043.00	14.00	79.00	70.00	880.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	877.00	3.00	77.00	4.00	793.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	841.00	43.00	82.00	34.00	682.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	729.00	4.00	90.00	1.00	634.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	725.00	9.00	65.00	5.00	646.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	472.00	10.00	28.00	91.00	343.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	452.00	3.00	16.00	1.00	432.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	432.00	0.00	45.00	0.00	387.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	412.00	23.00	54.00	25.00	310.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	355.00	31.00	75.00	28.00	221.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	295.00	18.00	38.00	27.00	212.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	291.00	4.00	10.00	5.00	272.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	285.00	3.00	15.00	1.00	266.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	272.00	9.00	7.00	2.00	254.00
......................................................................................TGGTAACTGTAAGACTGTGTCT..............................................	22	1	220.00	15.00	99.00	9.00	97.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	215.00	2.00	9.00	0.00	204.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	197.00	11.00	19.00	7.00	160.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	192.00	7.00	15.00	6.00	164.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	180.00	5.00	45.00	11.00	119.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	167.00	1.00	26.00	10.00	130.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	157.00	4.00	25.00	2.00	126.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	145.00	4.00	15.00	9.00	117.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	141.00	2.00	9.00	1.00	129.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	137.00	5.00	24.00	3.00	105.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	136.00	5.00	16.00	12.00	103.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	129.00	0.00	1.00	0.00	128.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	112.00	5.00	8.00	6.00	93.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	110.00	0.00	1.00	0.00	109.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	109.00	4.00	11.00	2.00	92.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	107.00	6.00	48.00	8.00	45.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	99.00	3.00	10.00	5.00	81.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	96.00	2.00	7.00	3.00	84.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	95.00	2.00	6.00	2.00	85.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	94.00	4.00	19.00	6.00	65.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	93.00	0.00	15.00	4.00	74.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	92.00	6.00	12.00	5.00	69.00
......................................................................................TGTTAACTGTTAGACTGTGTCT..............................................	22	1	90.00	2.00	3.00	3.00	82.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	88.00	3.00	16.00	7.00	62.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	44.00	0.00	0.00	0.00	44.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	84.00	3.00	12.00	3.00	66.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	82.00	1.00	12.00	5.00	64.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	80.00	7.00	12.00	5.00	56.00
......................................................................................TGTTAACTGTAAGACTGTGTCTC.............................................	23	1	78.00	0.00	17.00	6.00	55.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	77.00	7.00	23.00	5.00	42.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	77.00	4.00	26.00	9.00	38.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	76.00	3.00	8.00	6.00	59.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	72.00	2.00	13.00	1.00	56.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	71.00	3.00	11.00	9.00	48.00
................................................ACATAGTCATACGGTGAATGTT....................................................................................	22	1	67.00	0.00	23.00	0.00	44.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	65.00	7.00	10.00	4.00	44.00
......................................................................................TGTTAACTGTxAGACTGTGTCT..............................................	21	1	64.00	0.00	2.00	0.00	62.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	64.00	0.00	3.00	0.00	61.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	64.00	8.00	17.00	3.00	36.00
..........................................................................................AACTGTAAGACTGTGTCT..............................................	18	1	62.00	3.00	3.00	0.00	56.00
......................................................................................TGTTAACTGTGATACTGTGTCT..............................................	22	1	58.00	0.00	1.00	0.00	57.00
......................................................................................TGTGAACTGTAAGACTGTGTCT..............................................	22	1	58.00	2.00	5.00	0.00	51.00
......................................................................................TGTTAACTGTATGACTGTGTCT..............................................	22	1	54.00	0.00	6.00	2.00	46.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	49.00	4.00	6.00	3.00	36.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	49.00	0.00	6.00	1.00	42.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	48.00	0.00	2.00	19.00	27.00
.....................................................................................ATGTTAACTGTGAGACTGTGTCT..............................................	23	1	47.00	0.00	3.00	0.00	44.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	47.00	9.00	6.00	7.00	25.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	47.00	2.00	11.00	1.00	33.00
......................................................................................TGTTAACTGTAAGACTGTGTCTAA............................................	24	1	47.00	4.00	0.00	33.00	10.00
.....................................................................................ATGTTAACTGTAAGACTGTGTC...............................................	22	1	43.00	0.00	8.00	0.00	35.00
................................................ACATAGTCATACGGTGAATGTTG...................................................................................	23	1	42.00	0.00	6.00	0.00	36.00
......................................................................................TGTTAACTGTAAGACTGTGTCTG.............................................	23	1	40.00	0.00	4.00	0.00	36.00
......................................................................................TGTTAACTGTGAGACTGTGTAT..............................................	22	1	39.00	0.00	0.00	0.00	39.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	39.00	3.00	1.00	4.00	31.00
......................................................................................TGTAAACTGTAAGACTGTGTCT..............................................	22	1	39.00	5.00	2.00	0.00	32.00
.....................................................................................ATGTTAACTGTAAGACTGTGT................................................	21	1	39.00	1.00	1.00	0.00	37.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	39.00	3.00	8.00	1.00	27.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	38.00	4.00	15.00	6.00	13.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	38.00	4.00	17.00	5.00	12.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	36.00	0.00	1.00	8.00	27.00
......................................................................................TGTTACCTGTAAGACTGTGTCT..............................................	22	1	35.00	2.00	4.00	2.00	27.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	34.00	0.00	3.00	0.00	31.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	33.00	1.00	0.00	0.00	32.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	33.00	7.00	7.00	8.00	11.00
.......................................................................................GTTAACTGTGAGACTGTGTCT..............................................	21	1	30.00	0.00	3.00	0.00	27.00
......................................................................................TGTTAACTTTGAGACTGTGTCT..............................................	22	1	30.00	0.00	3.00	2.00	25.00
......................................................................................TGTTAACTGTAATACTTTGTCT..............................................	22	1	30.00	9.00	9.00	4.00	8.00
......................................................................................TTTTAACTGTGAGACTGTGTCT..............................................	22	1	27.00	0.00	0.00	0.00	27.00
......................................................................................TGTTAACTGTAAGACTGTGTGT..............................................	22	1	27.00	0.00	7.00	2.00	18.00
................................................ACATAGTCATACGGTGAATGT.....................................................................................	21	1	25.00	0.00	2.00	0.00	23.00
......................................................................................TGTTAACTGTGAGACTTTGTCT..............................................	22	1	25.00	0.00	1.00	0.00	24.00
......................................................................................TGTTAACTGTAAGACTGTG.................................................	19	1	24.00	0.00	3.00	0.00	21.00
......................................................................................TGGTAACTGGAAGACTGTGTCT..............................................	22	1	24.00	1.00	21.00	2.00	0.00
......................................................................................TGTTAACTGCGAGACTGTGTCT..............................................	22	1	23.00	0.00	3.00	1.00	19.00
......................................................................................TGTTAACTGTGAGAATGTGTCT..............................................	22	1	23.00	0.00	3.00	0.00	20.00
......................................................................................TGTTAACTGTGAGACTGTCT................................................	20	1	22.00	0.00	0.00	0.00	22.00
......................................................................................TGTTTACTGTAAGACTGTGTCT..............................................	22	1	22.00	2.00	6.00	1.00	13.00
......................................................................................TGTTAACTGTGAGACTGTTTCT..............................................	22	1	21.00	0.00	2.00	0.00	19.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCC..............................................	23	1	20.00	0.00	0.00	0.00	20.00
......................................................................................TGTTAACTGTAAGACTGTGACT..............................................	22	1	19.00	1.00	4.00	1.00	13.00
......................................................................................TGTTAACTGAAAGACTGTGTCT..............................................	22	1	19.00	0.00	3.00	2.00	14.00

droAna3

G----CCAAAG---GACCAAAAAA-GGATG--CCGCTCAATTACCCCGACATAGTCGTACGGTGAATGTTGTGTATTGGAAAGCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGggtGgTt----GggTtg--------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	85290.00	10726.00	58754.00	15349.00	461.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	5478.00	712.00	3905.00	812.00	49.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	4314.00	242.00	3487.00	584.00	1.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	1052.00	183.00	733.00	134.00	2.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	933.00	153.00	586.00	190.00	4.00
......................................................................................TGGTAACTGTAAGACTGTGTCT..............................................	22	1	842.00	4.00	500.00	335.00	3.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	654.00	133.00	492.00	29.00	0.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	596.00	173.00	372.00	50.00	1.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	562.00	51.00	272.00	51.00	188.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	559.00	80.00	351.00	126.00	2.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	499.00	46.00	392.00	61.00	0.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	415.00	62.00	283.00	64.00	6.00
..............................................................................................................GTGGGTGGGTGGTT----GGGT......................	18	2	187.00	4.00	182.00	1.00	0.00
..............................................................................................................GTGGGTGGGTGGTA----GGGT......................	18	2	130.50	1.00	127.50	2.00	0.00
..........................................................................................................GTGGGTGGTTGGGTGGTT----G.........................	19	3	71.67	3.00	66.67	1.67	0.33
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	202.00	38.00	120.00	44.00	0.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	172.00	6.00	89.00	75.00	2.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	172.00	14.00	91.00	66.00	1.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	172.00	7.00	131.00	26.00	8.00
..............................................................................................................GTGGGTGGGTGGAT----GGGT......................	18	4	40.50	1.00	39.50	0.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTGT..............................................	22	1	161.00	52.00	97.00	12.00	0.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	150.00	19.00	69.00	60.00	2.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	145.00	11.00	87.00	46.00	1.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	138.00	31.00	80.00	26.00	1.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	135.00	9.00	58.00	66.00	2.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	134.00	18.00	81.00	33.00	2.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	129.00	13.00	89.00	22.00	5.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	127.00	36.00	91.00	0.00	0.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	124.00	3.00	9.00	111.00	1.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	124.00	38.00	40.00	43.00	3.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	122.00	6.00	42.00	74.00	0.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	121.00	24.00	75.00	22.00	0.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	117.00	16.00	92.00	9.00	0.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	113.00	29.00	77.00	6.00	1.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	110.00	11.00	74.00	25.00	0.00
...................................................................................................................TGGGTGGTT----GGGTGG--------------------	18	2	53.50	0.00	52.00	1.00	0.50
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	106.00	15.00	49.00	40.00	2.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	99.00	10.00	65.00	21.00	3.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	98.00	28.00	66.00	3.00	1.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	96.00	8.00	62.00	24.00	2.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	95.00	37.00	30.00	27.00	1.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	92.00	1.00	3.00	87.00	1.00
..............................................................................................................ATGGGTGGGTGGTT----GGGT......................	18	2	45.00	0.50	44.00	0.50	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	89.00	13.00	51.00	24.00	1.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	83.00	18.00	53.00	12.00	0.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	83.00	10.00	52.00	20.00	1.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	82.00	8.00	40.00	32.00	2.00
................................................ACATAGTCGTACGGTGAATGTT....................................................................................	22	1	79.00	12.00	26.00	40.00	1.00
......................................................................................TGTTAACTGTATGACTGTGTCT..............................................	22	1	79.00	49.00	17.00	13.00	0.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	79.00	30.00	34.00	15.00	0.00
..............................................................................................................GTGGGTGGGTGGTT----GGGA......................	18	2	39.00	0.00	39.00	0.00	0.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	72.00	6.00	15.00	51.00	0.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	68.00	9.00	10.00	49.00	0.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	67.00	10.00	41.00	16.00	0.00
..........................................................................................................CTGGGTGGGTGGGTGGTT----G.........................	19	2	33.50	1.50	32.00	0.00	0.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	33.00	4.00	29.00	0.00	0.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	65.00	6.00	39.00	20.00	0.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	62.00	20.00	11.00	29.00	2.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	59.00	7.00	14.00	36.00	2.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	59.00	4.00	20.00	31.00	4.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	55.00	4.00	27.00	23.00	1.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	53.00	7.00	34.00	12.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTATT.............................................	23	1	53.00	10.00	43.00	0.00	0.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	52.00	3.00	5.00	44.00	0.00
..............................................................................................................GTGGGTGGGTGGTT----GGGTT.....................	19	2	26.00	1.50	24.50	0.00	0.00
..........................................................................................................GTGGGTGGTTGGGTGGTT----GGG.......................	21	3	17.00	1.00	15.67	0.33	0.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	50.00	8.00	28.00	14.00	0.00
...........................................................................................................TGGGTGGGTGGGTGGTT----GG........................	19	3	16.33	2.33	13.67	0.33	0.00
......................................................................................TGTGAACTGTAAGACTGTGTCT..............................................	22	1	47.00	2.00	2.00	43.00	0.00
......................................................................................TGGTAACTGTAAGACTGTGTCTT.............................................	23	1	45.00	0.00	28.00	17.00	0.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	44.00	22.00	13.00	9.00	0.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	44.00	4.00	18.00	22.00	0.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	42.00	1.00	25.00	16.00	0.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	42.00	2.00	26.00	14.00	0.00
......................................................................................TGTTAACTGTAAGACAGTGTCT..............................................	22	1	41.00	30.00	9.00	2.00	0.00
.......................................................................................GTTAACTGTAAGACTGTGTCTT.............................................	22	1	40.00	3.00	34.00	2.00	1.00
......................................................................................TGTTAACTGTTAGACTGTGTCT..............................................	22	1	40.00	10.00	22.00	8.00	0.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	39.00	7.00	18.00	12.00	2.00
......................................................................................TGTTAACGGTAAGACTGTGTCT..............................................	22	1	38.00	0.00	4.00	33.00	1.00
......................................................................................TGTTAACTGTAAGACGGTGTCT..............................................	22	1	38.00	8.00	21.00	9.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTAA............................................	24	1	38.00	2.00	6.00	1.00	29.00
..........................................................................................................CTGGGTGGGTGGGTGGTT----..........................	18	2	19.00	1.00	18.00	0.00	0.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	36.00	4.00	22.00	9.00	1.00
......................................................................................TGTTAACTGTAATACTGTGTCTT.............................................	23	1	36.00	5.00	27.00	4.00	0.00
......................................................................................TGGTAACTGGAAGACTGTGTCT..............................................	22	1	36.00	0.00	0.00	36.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTG............................................	24	1	35.00	1.00	29.00	4.00	1.00
......................................................................................TGTTAACTGTGAGACTGTGTAT..............................................	22	1	33.00	4.00	29.00	0.00	0.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	33.00	3.00	6.00	24.00	0.00
......................................................................................TGGTAACTGTGAGACTGTGTCT..............................................	22	1	32.00	0.00	20.00	12.00	0.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	31.00	8.00	20.00	3.00	0.00
...........................................................................................................TGGGTGGTTGGGTGGTT----GGG.......................	20	3	10.33	0.67	9.33	0.33	0.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	31.00	1.00	4.00	26.00	0.00
......................................................................................TGTTAACTGTxAGACTGTGTCT..............................................	21	1	30.00	1.00	27.00	2.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTG.............................................	23	1	30.00	4.00	18.00	8.00	0.00
......................................................................................TGTTAAGTGTAAGACTGTGTCT..............................................	22	1	30.00	4.00	7.00	19.00	0.00
..............................................................................................................GTGGGTGGGTGGAT----GGGTT.....................	19	2	15.00	0.00	15.00	0.00	0.00
..............................................................................................................GTGGTGGGGTGGTG----GGGT......................	18	1	28.00	0.00	28.00	0.00	0.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	26.00	3.00	8.00	14.00	1.00
......................................................................................TGTTAACTGTGATACTGTGTCT..............................................	22	1	25.00	0.00	22.00	3.00	0.00
......................................................................................TGTAAACTGTAAGACTGTGTCT..............................................	22	1	25.00	10.00	8.00	7.00	0.00

dp4

-------------------------------------------------CATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCA----AGCAGCA-AGCC--------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	22889.00	3359.00	3464.00	15349.00	717.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	1985.00	526.00	132.00	1256.00	71.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	1430.00	330.00	19.00	1026.00	55.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	1244.00	587.00	34.00	616.00	7.00
......................................................................................TGGTAACTGTAAGACTGTGTCT..............................................	22	1	205.00	0.00	40.00	165.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	152.00	53.00	29.00	70.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	114.00	22.00	16.00	42.00	34.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	100.00	18.00	5.00	76.00	1.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	90.00	0.00	6.00	84.00	0.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	88.00	27.00	16.00	41.00	4.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	82.00	19.00	6.00	52.00	5.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	73.00	15.00	37.00	21.00	0.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	56.00	3.00	8.00	45.00	0.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	52.00	1.00	6.00	43.00	2.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	49.00	3.00	6.00	39.00	1.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	49.00	3.00	4.00	42.00	0.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	48.00	0.00	26.00	22.00	0.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	45.00	3.00	7.00	26.00	9.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	42.00	13.00	10.00	19.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	40.00	6.00	4.00	29.00	1.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	38.00	8.00	1.00	27.00	2.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	36.00	0.00	12.00	24.00	0.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	32.00	7.00	10.00	15.00	0.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	28.00	1.00	4.00	19.00	4.00
......................................................................................TGTTAACTGTAAGACTGTG.................................................	19	1	28.00	4.00	2.00	22.00	0.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	28.00	3.00	4.00	21.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	28.00	0.00	8.00	19.00	1.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	27.00	1.00	13.00	13.00	0.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	26.00	5.00	6.00	15.00	0.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	25.00	2.00	8.00	14.00	1.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	25.00	5.00	0.00	19.00	1.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	24.00	5.00	5.00	13.00	1.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	24.00	0.00	6.00	18.00	0.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	22.00	2.00	4.00	16.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	22.00	3.00	7.00	12.00	0.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	22.00	1.00	8.00	13.00	0.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	20.00	5.00	1.00	13.00	1.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	20.00	3.00	2.00	15.00	0.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	19.00	0.00	3.00	15.00	1.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	19.00	7.00	0.00	10.00	2.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	19.00	2.00	5.00	12.00	0.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	18.00	0.00	5.00	10.00	3.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	18.00	2.00	1.00	14.00	1.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	18.00	2.00	4.00	12.00	0.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	18.00	1.00	1.00	13.00	3.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	17.00	2.00	2.00	13.00	0.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	17.00	2.00	1.00	14.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	17.00	3.00	4.00	10.00	0.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	17.00	0.00	4.00	13.00	0.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	16.00	6.00	2.00	4.00	4.00
......................................................................................TGTTAACTGTAAGACTGTGTCTC.............................................	23	1	16.00	1.00	8.00	7.00	0.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	15.00	2.00	1.00	6.00	6.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	15.00	4.00	1.00	10.00	0.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	15.00	1.00	3.00	11.00	0.00
......................................................................................TGTTAACTGTATGACTGTGTCT..............................................	22	1	15.00	1.00	2.00	12.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTAA............................................	24	1	14.00	0.00	14.00	0.00	0.00
......................................................................................TGTTAACTGAAAGACTGTGTCT..............................................	22	1	14.00	1.00	0.00	13.00	0.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	14.00	3.00	4.00	7.00	0.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	13.00	2.00	0.00	10.00	1.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	13.00	0.00	4.00	9.00	0.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	12.00	3.00	3.00	6.00	0.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	12.00	3.00	1.00	7.00	1.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	12.00	0.00	0.00	9.00	3.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	12.00	1.00	1.00	9.00	1.00
......................................................................................TGTTAACTGTTAGACTGTGTCT..............................................	22	1	11.00	2.00	4.00	5.00	0.00
......................................................................................TGGTAACTGTGAGACTGTGTCT..............................................	22	1	11.00	0.00	0.00	11.00	0.00
......................................................................................TGTGAACTGTAAGACTGTGTCT..............................................	22	1	11.00	0.00	5.00	6.00	0.00
......................................................................................TGGTAAGTGTAAGACTGTGTCT..............................................	22	1	11.00	0.00	3.00	8.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGACT..............................................	22	1	11.00	1.00	1.00	9.00	0.00
......................................................................................TGATAACTGCAAGACTGTGTCT..............................................	22	1	10.00	0.00	1.00	9.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	10.00	6.00	1.00	3.00	0.00
......................................................................................TGGTAACTGTAATACTGTGTCT..............................................	22	1	10.00	0.00	2.00	8.00	0.00
......................................................................................TGATAACTGTAAGACTGTGTC...............................................	21	1	9.00	0.00	0.00	9.00	0.00
......................................................................................TGTTAACTGTAAGACGGTGTCT..............................................	22	1	9.00	0.00	2.00	7.00	0.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	8.00	1.00	1.00	6.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGCC...............................................	21	1	8.00	0.00	0.00	8.00	0.00
......................................................................................TGTTAACTGTAGGACTGTGTC...............................................	21	1	8.00	2.00	0.00	5.00	1.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	8.00	1.00	3.00	4.00	0.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	8.00	0.00	3.00	5.00	0.00
......................................................................................TGTTAAATGTAAGACTGTGGCT..............................................	22	1	7.00	0.00	3.00	4.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCG..............................................	22	1	7.00	2.00	1.00	3.00	1.00
......................................................................................TGTTACCTGTAAGACTGTGTCT..............................................	22	1	7.00	1.00	1.00	5.00	0.00
......................................................................................TGGTAACTGGAAGACTGTGTCT..............................................	22	1	6.00	0.00	1.00	5.00	0.00
......................................................................................TGTTAACTGTAATACTGTGTC...............................................	21	1	6.00	1.00	0.00	5.00	0.00
......................................................................................TGTTAACTGTGAGACTGTGT................................................	20	1	6.00	2.00	0.00	4.00	0.00
......................................................................................TGGTAACTGTAAGACTGTGTC...............................................	21	1	6.00	0.00	0.00	6.00	0.00
......................................................................................TGTTATCTGTAAGACTGTGTCT..............................................	22	1	6.00	0.00	1.00	5.00	0.00
......................................................................................TGTTAACGGTAAGACTGTGTCT..............................................	22	1	6.00	1.00	1.00	4.00	0.00
.......................................................................................GTTAACTGTAAGACTGTGTC...............................................	20	1	6.00	3.00	1.00	2.00	0.00
......................................................................................TGTTAAGTGTAAGACTGTGTCT..............................................	22	1	6.00	0.00	2.00	4.00	0.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	2.50	1.50	0.00	0.50	0.50
......................................................................................TGATAACTGGAAGACTGTGTCT..............................................	22	1	5.00	0.00	4.00	1.00	0.00
......................................................................................TGTTAACTGTAAGTCTGGGTCT..............................................	22	1	5.00	0.00	2.00	3.00	0.00
......................................................................................TGCTAACTGTGAGACTGTGTCT..............................................	22	1	5.00	0.00	0.00	5.00	0.00
......................................................................................TGCTAACTGTAAGACTGTGTC...............................................	21	1	5.00	1.00	1.00	3.00	0.00
......................................................................................TGGTAACTGTAAGACTGTCTCT..............................................	22	1	5.00	0.00	1.00	4.00	0.00
......................................................................................TGTTAACTGTGAGGCTGTGTCT..............................................	22	1	5.00	0.00	1.00	4.00	0.00
......................................................................................TGATAACTGTAAGACTGTGT................................................	20	1	5.00	0.00	0.00	5.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTGT..............................................	22	1	5.00	0.00	1.00	4.00	0.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	5.00	1.00	3.00	1.00	0.00

droPer1

AGGAGATG--TGAAGGAGCCCAAA-GGATG-CCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGTATTGG--ACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTCAGCCA----AGCAGCA-AGCC--------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	45517.00	5810.00	1161.00	15536.00	16015.00	6995.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	4121.00	549.00	45.00	1268.00	1944.00	315.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	3323.00	473.00	15.00	1311.00	1437.00	87.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	2923.00	935.00	11.00	583.00	1385.00	9.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	694.00	45.00	8.00	48.00	73.00	520.00
......................................................................................TGGTAACTGTAAGACTGTGTCT..............................................	22	1	517.00	1.00	4.00	64.00	448.00	0.00
................................................ACATAGTCGTACGGTGAATGTT....................................................................................	22	1	321.00	15.00	3.00	129.00	160.00	14.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	303.00	85.00	14.00	91.00	107.00	6.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	274.00	68.00	1.00	83.00	109.00	13.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	227.00	4.00	2.00	34.00	70.00	117.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	203.00	24.00	6.00	45.00	90.00	38.00
......................................................................................TGTTAACTGTAAGACTGTGTCG..............................................	22	1	200.00	1.00	1.00	6.00	8.00	184.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	184.00	84.00	4.00	50.00	34.00	12.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	135.00	22.00	0.00	54.00	59.00	0.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	135.00	4.00	1.00	6.00	3.00	121.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	127.00	0.00	0.00	29.00	97.00	1.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	125.00	4.00	1.00	41.00	76.00	3.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	110.00	9.00	3.00	30.00	54.00	14.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	108.00	0.00	3.00	30.00	75.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	106.00	12.00	2.00	28.00	62.00	2.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	104.00	4.00	2.00	73.00	23.00	2.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	97.00	4.00	0.00	10.00	4.00	79.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	90.00	5.00	3.00	24.00	50.00	8.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	87.00	7.00	25.00	18.00	26.00	11.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	85.00	12.00	0.00	0.00	0.00	73.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	81.00	13.00	3.00	27.00	37.00	1.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	80.00	0.00	0.00	3.00	9.00	68.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	80.00	1.00	1.00	9.00	68.00	1.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	78.00	0.00	1.00	17.00	31.00	29.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	76.00	0.00	2.00	10.00	29.00	35.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	74.00	0.00	2.00	16.00	56.00	0.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	70.00	1.00	2.00	15.00	47.00	5.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	70.00	4.00	3.00	17.00	38.00	8.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	69.00	4.00	1.00	23.00	34.00	7.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	68.00	4.00	0.00	15.00	17.00	32.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	65.00	3.00	1.00	5.00	43.00	13.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	64.00	3.00	0.00	22.00	30.00	9.00
......................................................................................TGGTAACTGGAAGACTGTGTCT..............................................	22	1	62.00	0.00	0.00	6.00	56.00	0.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	61.00	1.00	0.00	18.00	35.00	7.00
......................................................................................TGTGAACTGTAAGACTGTGTCT..............................................	22	1	58.00	0.00	0.00	9.00	49.00	0.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	56.00	4.00	0.00	20.00	32.00	0.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	52.00	2.00	0.00	18.00	7.00	25.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	50.00	1.00	4.00	7.00	38.00	0.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	48.00	2.00	2.00	14.00	29.00	1.00
......................................................................................TGGTAACTGTAAGACTGTGT................................................	20	1	47.00	0.00	0.00	4.00	43.00	0.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	47.00	7.00	2.00	10.00	23.00	5.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	47.00	1.00	0.00	13.00	33.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	47.00	0.00	3.00	12.00	31.00	1.00
......................................................................................TGTTAACTGTAAGACTGTG.................................................	19	1	47.00	5.00	0.00	8.00	34.00	0.00
......................................................................................TGGTAACTGTAAGACTGTGTC...............................................	21	1	46.00	0.00	0.00	3.00	43.00	0.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	45.00	3.00	1.00	14.00	25.00	2.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	44.00	1.00	3.00	14.00	26.00	0.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	43.00	0.00	1.00	15.00	21.00	6.00
......................................................................................TGGTAACTGTGAGACTGTGTCT..............................................	22	1	43.00	0.00	0.00	2.00	41.00	0.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	42.00	1.00	4.00	10.00	27.00	0.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	42.00	0.00	0.00	17.00	17.00	8.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	38.00	1.00	0.00	12.00	24.00	1.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	36.00	0.00	2.00	17.00	15.00	2.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	35.00	1.00	0.00	6.00	22.00	6.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	34.00	2.00	2.00	19.00	9.00	2.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	34.00	2.00	0.00	9.00	18.00	5.00
................................................ACATAGTCGTACGGTGAATGTTG...................................................................................	23	1	33.00	3.00	0.00	8.00	22.00	0.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	33.00	3.00	0.00	4.00	18.00	8.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	31.00	2.00	0.00	11.00	17.00	1.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	31.00	7.00	0.00	13.00	9.00	2.00
......................................................................................TGTTAACTGTAAGACTGTGTCTC.............................................	23	1	31.00	1.00	0.00	4.00	26.00	0.00
......................................................................................TGTTAACTGAAAGACTGTGTCT..............................................	22	1	30.00	0.00	0.00	11.00	18.00	1.00
......................................................................................TGTTACCTGTAAGACTGTGTCT..............................................	22	1	30.00	0.00	0.00	21.00	9.00	0.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	30.00	1.00	1.00	4.00	3.00	21.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	29.00	4.00	1.00	10.00	13.00	1.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	29.00	1.00	0.00	11.00	14.00	3.00
......................................................................................TGTTAACGGTAAGACTGTGTCT..............................................	22	1	29.00	0.00	1.00	1.00	27.00	0.00
..........................................................................................AACTGTAAGACTGTGTCT..............................................	18	1	28.00	2.00	0.00	2.00	3.00	21.00
......................................................................................TGTTATCTGTAAGACTGTGTCT..............................................	22	1	28.00	0.00	0.00	22.00	6.00	0.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	27.00	0.00	1.00	8.00	11.00	7.00
......................................................................................TGTTAACTGTAAGACTGTGTGT..............................................	22	1	27.00	2.00	0.00	5.00	19.00	1.00
......................................................................................TGGTAAGTGTAAGACTGTGTCT..............................................	22	1	26.00	0.00	0.00	2.00	24.00	0.00
......................................................................................TGGTAACTGTAATACTGTGTCT..............................................	22	1	25.00	0.00	0.00	7.00	18.00	0.00
......................................................................................TGGTAACTGTAAGACTGGGTCT..............................................	22	1	24.00	0.00	0.00	2.00	22.00	0.00
......................................................................................TGTTAACTGTATGACTGTGTCT..............................................	22	1	24.00	5.00	3.00	6.00	10.00	0.00
......................................................................................TGTTAACTGGGAGACTGTGTCT..............................................	22	1	23.00	1.00	0.00	3.00	19.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGACT..............................................	22	1	23.00	1.00	1.00	10.00	9.00	2.00
......................................................................................TGTTAACTGTAATACTGTGTC...............................................	21	1	23.00	0.00	0.00	6.00	15.00	2.00
......................................................................................TGTTAACTGTAAGACTGT..................................................	18	1	23.00	3.00	1.00	2.00	1.00	16.00
......................................................................................TGATAACTGCAAGACTGTGTCT..............................................	22	1	21.00	0.00	0.00	4.00	17.00	0.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	10.50	1.50	0.00	0.50	0.00	8.50
......................................................................................TGTTAACTGCGAGACTGTGTCT..............................................	22	1	21.00	0.00	0.00	4.00	17.00	0.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	21.00	2.00	1.00	8.00	9.00	1.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	20.00	0.00	0.00	5.00	15.00	0.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	19.00	1.00	0.00	9.00	6.00	3.00
......................................................................................TGTTAACTGTGAGACTGTGT................................................	20	1	18.00	4.00	0.00	7.00	7.00	0.00
......................................................................................TGTTAAGTGTAAGACTGTGTCT..............................................	22	1	17.00	0.00	0.00	3.00	14.00	0.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	17.00	2.00	1.00	5.00	2.00	7.00
......................................................................................TGGGAACTGTAAGACTGTGTCT..............................................	22	1	16.00	0.00	1.00	0.00	15.00	0.00
......................................................................................TGGTAACTGTAAGGCTGTGTCT..............................................	22	1	15.00	0.00	0.00	1.00	14.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGC................................................	20	1	15.00	2.00	0.00	1.00	10.00	2.00
......................................................................................TGTTAACTGTAAGACTGTGCC...............................................	21	1	15.00	1.00	0.00	6.00	7.00	1.00
......................................................................................TGTTAACTGTGAGACTGCGTCT..............................................	22	1	15.00	0.00	0.00	7.00	7.00	1.00
......................................................................................TGGTAACGGTAAGACTGTGTCT..............................................	22	1	14.00	0.00	0.00	1.00	13.00	0.00
......................................................................................TGATAACTGTAAGACTGTGTC...............................................	21	1	14.00	0.00	0.00	2.00	12.00	0.00

droWil1

G----ggttgG---tgAGCAGCAA-AGATGTCCCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCA----AACAACA-------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	472968.00	7467.00	15994.00	94931.00	354576.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	31907.00	17.00	49.00	140.00	31701.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	17022.00	242.00	52.00	5023.00	11705.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	7079.00	4.00	30.00	86.00	6959.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	5894.00	3.00	12.00	118.00	5761.00
......................................................................................TGTTAACTGTAAGACTGTGTCG..............................................	22	1	5759.00	2.00	3.00	6.00	5748.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	4880.00	107.00	179.00	625.00	3969.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	3719.00	8.00	17.00	122.00	3572.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	3213.00	11.00	21.00	134.00	3047.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	2723.00	4.00	3.00	69.00	2647.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	2375.00	4.00	17.00	113.00	2241.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	2018.00	3.00	26.00	88.00	1901.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	1858.00	45.00	237.00	1165.00	411.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	1391.00	2.00	17.00	63.00	1309.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	1332.00	16.00	23.00	243.00	1050.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	1190.00	15.00	32.00	187.00	956.00
......................................................................................TGTTAACTGTGAGACTGTGTCC..............................................	22	1	1144.00	0.00	0.00	9.00	1135.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	1075.00	4.00	2.00	147.00	922.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	523.00	1.50	6.50	51.00	464.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	1024.00	16.00	84.00	149.00	775.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	799.00	22.00	345.00	327.00	105.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	748.00	19.00	24.00	334.00	371.00
......................................................................................TGTTAACTGTAATACTGTGTCC..............................................	22	1	673.00	0.00	0.00	0.00	673.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	661.00	4.00	2.00	109.00	546.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	628.00	11.00	22.00	154.00	441.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	535.00	8.00	19.00	182.00	326.00
......................................................................................TTTTAACTGTAAGACTGTGTCC..............................................	22	1	506.00	0.00	0.00	0.00	506.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	500.00	77.00	61.00	310.00	52.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	488.00	12.00	13.00	106.00	357.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	488.00	14.00	21.00	196.00	257.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	487.00	7.00	22.00	296.00	162.00
......................................................................................TGTTAACTGTxATACTGTGTCT..............................................	21	1	485.00	0.00	3.00	8.00	474.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	473.00	9.00	31.00	96.00	337.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	455.00	10.00	7.00	49.00	389.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	443.00	10.00	22.00	155.00	256.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	429.00	0.00	20.00	311.00	98.00
................................................ACATAGTCGTACGGTGAATGTT....................................................................................	22	1	419.00	4.00	122.00	105.00	188.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	376.00	5.00	15.00	92.00	264.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	363.00	2.00	8.00	142.00	211.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	347.00	10.00	21.00	150.00	166.00
........................................................................................TTAACTGTAAGACTGTGTCC..............................................	20	1	342.00	0.00	0.00	0.00	342.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	328.00	5.00	17.00	117.00	189.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	318.00	3.00	6.00	52.00	257.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	317.00	4.00	10.00	56.00	247.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	311.00	3.00	2.00	58.00	248.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	310.00	1.00	20.00	270.00	19.00
.......................................................................................TTTAACTGTAAGACTGTGTCC..............................................	21	1	297.00	1.00	0.00	0.00	296.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	295.00	6.00	13.00	93.00	183.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	287.00	5.00	13.00	99.00	170.00
......................................................................................TGTTAACTGTxACACTGTGTCT..............................................	21	1	275.00	0.00	1.00	3.00	271.00
......................................................................................TGTTAACTGTAAxACTGTGTCT..............................................	21	1	261.00	0.00	0.00	2.00	259.00
......................................................................................TGTTAACTGTAACACTGTGTCC..............................................	22	1	256.00	0.00	0.00	2.00	254.00
......................................................................................TGTTAACTGTAxxACTGTGTCT..............................................	20	1	252.00	0.00	2.00	10.00	240.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	244.00	4.00	9.00	116.00	115.00
......................................................................................TGTTAACTGTxAGACTGTGTCT..............................................	21	1	238.00	1.00	5.00	84.00	148.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	235.00	4.00	11.00	133.00	87.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	234.00	1.00	1.00	83.00	149.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	219.00	4.00	7.00	74.00	134.00
......................................................................................TCTTAACTGTAAGACTGTGTCC..............................................	22	1	217.00	0.00	0.00	0.00	217.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	212.00	2.00	3.00	106.00	101.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	210.00	1.00	10.00	105.00	94.00
......................................................................................TGTTAACTGTGAGACTGTGTCG..............................................	22	1	208.00	0.00	0.00	0.00	208.00
..........................................................................................AACTGTAAGACTGTGTCT..............................................	18	1	199.00	3.00	5.00	48.00	143.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	185.00	10.00	12.00	74.00	89.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	176.00	3.00	5.00	128.00	40.00
......................................................................................TGTTAACTGTAAGACTTTGTCC..............................................	22	1	167.00	0.00	0.00	0.00	167.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	157.00	2.00	3.00	102.00	50.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	142.00	2.00	2.00	6.00	132.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	139.00	0.00	5.00	69.00	65.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	138.00	3.00	2.00	9.00	124.00
......................................................................................TGTTAACTGTAATACTGTGTCG..............................................	22	1	137.00	0.00	0.00	0.00	137.00
......................................................................................TGTTAACTGAAAGACTGTGTCT..............................................	22	1	133.00	2.00	4.00	87.00	40.00
......................................................................................TGTTAACTTTAAGACTGTGTCC..............................................	22	1	132.00	0.00	0.00	0.00	132.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	129.00	0.00	2.00	97.00	30.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	120.00	2.00	6.00	95.00	17.00
......................................................................................TGTTAACTxTAAGACTGTGTCT..............................................	21	1	119.00	1.00	0.00	0.00	118.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	117.00	2.00	0.00	13.00	102.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	113.00	0.00	5.00	81.00	27.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	112.00	1.00	8.00	26.00	77.00
......................................................................................TGTTAACxxTAAGACTGTGTCT..............................................	20	1	110.00	2.00	1.00	13.00	94.00
......................................................................................TGTTAACTGTAAGACTGTGACT..............................................	22	1	106.00	3.00	0.00	38.00	65.00
......................................................................................TGTTAACTGTATGACTGTGTCT..............................................	22	1	98.00	2.00	4.00	48.00	44.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	97.00	2.00	5.00	66.00	24.00
......................................................................................TGTAAACTGTAAGACTGTGTCT..............................................	22	1	95.00	1.00	3.00	28.00	63.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	94.00	1.00	9.00	46.00	38.00
......................................................................................TGTTAACTGTAGGACTGTGTCC..............................................	22	1	91.00	0.00	0.00	0.00	91.00
......................................................................................TTTTAACTGTGAGACTGTGTCT..............................................	22	1	91.00	1.00	0.00	7.00	83.00
......................................................................................TGTTAACTGTAAGACTGTCC................................................	20	1	88.00	0.00	0.00	0.00	88.00
......................................................................................TGTTAACTGTAAAACTGTGTCC..............................................	22	1	85.00	0.00	0.00	0.00	85.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	84.00	6.00	7.00	65.00	6.00
......................................................................................TTTTAACTGTAAGACTTTGTCT..............................................	22	1	81.00	0.00	0.00	0.00	81.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCC..............................................	23	1	80.00	0.00	1.00	0.00	79.00
......................................................................................TTTTAACTGTAAGACTGTGTCG..............................................	22	1	79.00	0.00	0.00	0.00	79.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	77.00	4.00	8.00	59.00	6.00
......................................................................................TGTTACCTGTAAGACTGTGTCT..............................................	22	1	71.00	0.00	4.00	63.00	4.00
........................................................................................TTAACTGTGAGACTGTGTCT..............................................	20	1	70.00	1.00	0.00	5.00	64.00
......................................................................................TGTTAACTGTGAGACTTTGTCT..............................................	22	1	65.00	0.00	1.00	4.00	60.00
........................................................................................TTAACTGTAAGACTGTGTCG..............................................	20	1	65.00	0.00	0.00	0.00	65.00
.......................................................................................TTTAACTGTGAGACTGTGTCT..............................................	21	1	62.00	2.00	0.00	6.00	54.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	62.00	0.00	0.00	16.00	46.00

droVir3

G-------------------------------CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTGTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGTTAGCTA----ATCAACA-------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	74049.00	4127.00	14395.00	3043.00	1453.00	51031.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	13297.00	505.00	3509.00	22.00	167.00	9094.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	6662.00	7.00	29.00	2.00	125.00	6499.00
......................................................................................TGTTAACTGTAAGACTGTGTCG..............................................	22	1	1617.00	6.00	14.00	0.00	57.00	1540.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	1247.00	24.00	304.00	1.00	16.00	902.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	1187.00	64.00	246.00	10.00	24.00	843.00
......................................................................................TGTTAACTGTGAGACTGTGTCC..............................................	22	1	1169.00	1.00	6.00	0.00	11.00	1151.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	1144.00	22.00	295.00	0.00	8.00	819.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	617.00	32.00	79.00	10.00	15.00	481.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	606.00	2.00	46.00	34.00	19.00	505.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	471.00	2.00	3.00	2.00	23.00	441.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	419.00	58.00	211.00	70.00	3.00	77.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	396.00	3.00	6.00	0.00	9.00	378.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	363.00	5.00	0.00	0.00	17.00	341.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	357.00	23.00	89.00	0.00	6.00	239.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	325.00	16.00	97.00	11.00	6.00	195.00
......................................................................................TGGTAACTGTAAGACTGTGTCT..............................................	22	1	275.00	0.00	265.00	9.00	1.00	0.00
......................................................................................TGTTAACTGTGAGACTGTGTCG..............................................	22	1	269.00	0.00	3.00	0.00	6.00	260.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	236.00	42.00	162.00	4.00	1.00	27.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	225.00	6.00	2.00	2.00	12.00	203.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	221.00	1.00	17.00	6.00	13.00	184.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	194.00	5.00	80.00	10.00	4.00	95.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	185.00	1.00	26.00	25.00	8.00	125.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	147.00	13.00	26.00	91.00	2.00	15.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	143.00	1.00	7.00	27.00	2.00	106.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	127.00	26.00	21.00	5.00	7.00	68.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	127.00	0.00	19.00	9.00	2.00	97.00
......................................................................................TGTTAACTGTAGGACTGTGTCC..............................................	22	1	118.00	0.00	1.00	0.00	0.00	117.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	118.00	4.00	26.00	3.00	2.00	83.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	110.00	0.00	100.00	1.00	0.00	9.00
......................................................................................TGTTAACTGTAAGACTxTGTCT..............................................	21	2	53.00	0.50	0.00	0.00	1.50	51.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	106.00	1.00	77.00	5.00	1.00	22.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	105.00	1.00	18.00	0.00	1.00	85.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	95.00	3.00	27.00	5.00	3.00	57.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	93.00	3.00	41.00	12.00	1.00	36.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	87.00	6.00	3.00	0.00	1.00	77.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	84.00	12.00	29.00	7.00	0.00	36.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	83.00	2.00	26.00	5.00	0.00	50.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	79.00	1.00	18.00	28.00	3.00	29.00
......................................................................................TGTTAACTGTAATACTGTGTCC..............................................	22	1	75.00	0.00	1.00	0.00	4.00	70.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	70.00	2.00	35.00	6.00	2.00	25.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	67.00	2.00	21.00	9.00	2.00	33.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	61.00	1.00	18.00	8.00	1.00	33.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	60.00	1.00	14.00	4.00	0.00	41.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	60.00	0.00	50.00	8.00	0.00	2.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCC..............................................	23	1	59.00	0.00	0.00	0.00	2.00	57.00
........................................................................................TTAACTGTAAGACTGTGTCC..............................................	20	1	58.00	0.00	0.00	0.00	1.00	57.00
......................................................................................TGTTAACTGGGAGACTGTGTCT..............................................	22	1	57.00	1.00	47.00	1.00	0.00	8.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	53.00	1.00	40.00	6.00	0.00	6.00
......................................................................................TTTTAACTGTAAGACTGTGTCC..............................................	22	1	52.00	0.00	0.00	0.00	2.00	50.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	50.00	7.00	9.00	2.00	1.00	31.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	48.00	8.00	19.00	5.00	0.00	16.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	46.00	0.00	38.00	1.00	0.00	7.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	46.00	3.00	14.00	3.00	1.00	25.00
......................................................................................TGTTAACTGTGAGGCTGTGTCT..............................................	22	1	44.00	0.00	11.00	0.00	2.00	31.00
......................................................................................TGGTAACTGTGAGACTGTGTCT..............................................	22	1	44.00	0.00	44.00	0.00	0.00	0.00
......................................................................................TGTTAACTGTGAGACTGTGCCT..............................................	22	1	44.00	0.00	25.00	0.00	1.00	18.00
......................................................................................TTTTAACTGTGAGACTGTGTCT..............................................	22	1	43.00	0.00	1.00	0.00	1.00	41.00
......................................................................................TGTTAACTGCGAGACTGTGTCT..............................................	22	1	43.00	1.00	26.00	1.00	1.00	14.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	43.00	4.00	25.00	3.00	1.00	10.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	42.00	3.00	13.00	4.00	1.00	21.00
......................................................................................TGGTAACTGGAAGACTGTGTCT..............................................	22	1	41.00	0.00	39.00	2.00	0.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	40.00	6.00	19.00	5.00	1.00	9.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	39.00	8.00	7.00	19.00	0.00	5.00
......................................................................................TGTTAACTGTxATACTGTGTCT..............................................	21	1	38.00	0.00	0.00	0.00	0.00	38.00
......................................................................................TGTTAACTGTAAGACTGTGTCTAA............................................	24	1	38.00	2.00	3.00	33.00	0.00	0.00
........................................................................................TTAACTGTGAGACTGTGTCT..............................................	20	1	37.00	3.00	0.00	0.00	1.00	33.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	36.00	4.00	7.00	7.00	2.00	16.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	36.00	1.00	13.00	6.00	0.00	16.00
.......................................................................................TTTAACTGTAAGACTGTGTCC..............................................	21	1	36.00	0.00	0.00	0.00	0.00	36.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	34.00	2.00	18.00	1.00	0.00	13.00
......................................................................................TGTTGACTGTAGGACTGTGTCT..............................................	22	1	33.00	3.00	5.00	0.00	1.00	24.00
......................................................................................TGTTAGCTGTGAGACTGTGTCT..............................................	22	1	32.00	3.00	10.00	0.00	0.00	19.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	32.00	6.00	8.00	3.00	0.00	15.00
......................................................................................TGTTGACTGTAAGACTGTGTCC..............................................	22	1	31.00	0.00	0.00	0.00	2.00	29.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	31.00	2.00	16.00	6.00	0.00	7.00
................................................ACATAGTCGTACGGTGAATGTT....................................................................................	22	1	31.00	4.00	17.00	2.00	2.00	6.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	30.00	3.00	19.00	5.00	0.00	3.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	30.00	7.00	12.00	1.00	0.00	10.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	29.00	2.00	15.00	1.00	0.00	11.00
......................................................................................TGTTAACTGTAAGACTGTGACT..............................................	22	1	28.00	5.00	7.00	1.00	1.00	14.00
......................................................................................TGTTAACTGTAACACTGTGTCC..............................................	22	1	27.00	0.00	0.00	0.00	2.00	25.00
......................................................................................TGTTAACTGTAGGACTGTGTCG..............................................	22	1	27.00	0.00	0.00	0.00	1.00	26.00
......................................................................................TGTTAACTGAAAGACTGTGTCT..............................................	22	1	27.00	3.00	10.00	2.00	0.00	12.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	27.00	2.00	11.00	8.00	0.00	6.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	26.00	2.00	15.00	9.00	0.00	0.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	26.00	1.00	5.00	1.00	1.00	18.00
......................................................................................TGTTAACTGTAATACTGTGTCG..............................................	22	1	26.00	0.00	0.00	0.00	1.00	25.00
......................................................................................TGTTAACTGTAxxACTGTGTCT..............................................	20	1	25.00	0.00	0.00	0.00	0.00	25.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	24.00	2.00	5.00	7.00	1.00	9.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	24.00	3.00	14.00	5.00	0.00	2.00
......................................................................................TGTTAACTGTGCGACTGTGTCT..............................................	22	1	24.00	0.00	7.00	0.00	0.00	17.00
......................................................................................TCTTAACTGTAAGACTGTGTCC..............................................	22	1	23.00	0.00	0.00	0.00	0.00	23.00
......................................................................................TCTTAACTGTGAGACTGTGTCT..............................................	22	1	22.00	1.00	0.00	0.00	1.00	20.00
......................................................................................TGTTAACTGTGATACTGTGTCT..............................................	22	1	22.00	0.00	10.00	0.00	0.00	12.00
......................................................................................TGTTAACTGTxACACTGTGTCT..............................................	21	1	21.00	0.00	0.00	0.00	0.00	21.00
.....................................................................................ATGTTAACTGTGAGACTGTGTCT..............................................	23	1	21.00	0.00	6.00	0.00	0.00	15.00
.......................................................................................TTTAACTGTGAGACTGTGTCT..............................................	21	1	21.00	0.00	0.00	0.00	2.00	19.00
......................................................................................TGGTAACTGTAATACTGTGTCT..............................................	22	1	21.00	0.00	20.00	1.00	0.00	0.00
.........................................................................................TAACTGTAAGACTGTGTCT..............................................	19	1	21.00	0.00	1.00	0.00	1.00	19.00

droMoj3

A----TTAAAA---GG-GCAGTGA--GTCG--CCGCTCAATTACCGTGACATAGTCGTACGGTGAATGTTGTTTA-TGGAGTCCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTG-CAGCCA----AACAACA-------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	37802.00	6449.00	18663.00	10642.00	2048.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	3579.00	451.00	1878.00	1245.00	5.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	874.00	69.00	453.00	272.00	80.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	589.00	115.00	305.00	160.00	9.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	491.00	72.00	271.00	143.00	5.00
......................................................................................TGGTAACTGTAAGACTGTGTCT..............................................	22	1	398.00	2.00	251.00	133.00	12.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	304.00	28.00	180.00	95.00	1.00
......................................................................................TGTTAACTGTAATACTGTGTCT..............................................	22	1	178.00	7.00	62.00	105.00	4.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	176.00	38.00	46.00	36.00	56.00
......................................................................................TGTTGACTGTAAGACTGTGTCT..............................................	22	1	164.00	24.00	76.00	60.00	4.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	102.00	0.00	28.00	72.00	2.00
......................................................................................TGTTAACTGTAAGCCTGTGTCT..............................................	22	1	100.00	1.00	61.00	35.00	3.00
......................................................................................TGTTAACTGTGGGACTGTGTCT..............................................	22	1	99.00	9.00	57.00	33.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTC.............................................	23	1	95.00	30.00	37.00	20.00	8.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	94.00	37.00	27.00	19.00	11.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	91.00	3.00	54.00	30.00	4.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	87.00	3.00	71.00	12.00	1.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	83.00	1.00	68.00	14.00	0.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	83.00	4.00	29.00	49.00	1.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	81.00	3.00	45.00	27.00	6.00
................................................ACATAGTCGTACGGTGAATGTT....................................................................................	22	1	80.00	24.00	27.00	17.00	12.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	76.00	16.00	38.00	18.00	4.00
......................................................................................TGTTAACTGTAAGGCTGTGTCT..............................................	22	1	73.00	5.00	30.00	32.00	6.00
......................................................................................TGTTAACTGGAAGACTGTGTCT..............................................	22	1	73.00	1.00	52.00	18.00	2.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	70.00	4.00	43.00	22.00	1.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	68.00	6.00	38.00	19.00	5.00
......................................................................................TGTTAACTGTCAGACTGTGTCT..............................................	22	1	68.00	0.00	16.00	50.00	2.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	67.00	8.00	16.00	43.00	0.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	65.00	5.00	40.00	19.00	1.00
......................................................................................TGGTAACTGGAAGACTGTGTCT..............................................	22	1	62.00	0.00	40.00	22.00	0.00
......................................................................................TGTTGACTGTGAGACTGTGTCT..............................................	22	1	58.00	5.00	32.00	21.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	53.00	10.00	26.00	15.00	2.00
......................................................................................TGTTAACTGTAAGTCTGTGTCT..............................................	22	1	52.00	4.00	37.00	10.00	1.00
......................................................................................TGTTAACTGTAAGACTTTGTCT..............................................	22	1	52.00	5.00	23.00	24.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTAT..............................................	22	1	50.00	5.00	20.00	18.00	7.00
......................................................................................TGTTAACTGTAAGACCGTGTCT..............................................	22	1	49.00	4.00	27.00	15.00	3.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	47.00	2.00	27.00	16.00	2.00
......................................................................................TGTTAACCGTAAGACTGTGTCT..............................................	22	1	44.00	3.00	23.00	16.00	2.00
......................................................................................TGTTAACTGTAAGAATGTGTCT..............................................	22	1	42.00	5.00	16.00	16.00	5.00
......................................................................................TGGTAACTGTAATACTGTGTCT..............................................	22	1	42.00	0.00	23.00	19.00	0.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	41.00	5.00	25.00	11.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTCTG.............................................	23	1	41.00	3.00	25.00	13.00	0.00
......................................................................................TGTTAACTGTAACACTGTGTCT..............................................	22	1	40.00	2.00	27.00	10.00	1.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	37.00	9.00	17.00	11.00	0.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	36.00	3.00	22.00	11.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTTT..............................................	22	1	35.00	3.00	23.00	7.00	2.00
......................................................................................TGGTAACTGTGAGACTGTGTCT..............................................	22	1	34.00	0.00	23.00	11.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGGCT..............................................	22	1	33.00	0.00	18.00	11.00	4.00
......................................................................................TGTTCACTGTAAGACTGTGTCT..............................................	22	1	33.00	1.00	18.00	14.00	0.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	33.00	2.00	13.00	17.00	1.00
......................................................................................TATTAACTGTAAGACTGTGTCT..............................................	22	1	31.00	1.00	14.00	14.00	2.00
......................................................................................TGTTAACTGTAAGACTGTATCT..............................................	22	1	31.00	2.00	14.00	14.00	1.00
......................................................................................TGTTAACTGTAAGACTGTGTCA..............................................	22	1	31.00	5.00	16.00	8.00	2.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	30.00	5.00	10.00	12.00	3.00
......................................................................................TGTGAACTGTAAGACTGTGTCT..............................................	22	1	30.00	0.00	22.00	6.00	2.00
......................................................................................TGTTAACTGTAAGACTCTGTCT..............................................	22	1	28.00	2.00	15.00	11.00	0.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	28.00	2.00	10.00	14.00	2.00
......................................................................................TGTTAACTGTAAGACTGTGTCTAA............................................	24	1	27.00	9.00	2.00	0.00	16.00
...........................TCG--CCGCTCAATTACCGTG..........................................................................................................	19	1	26.00	0.00	6.00	6.00	14.00
......................................................................................TTTTAACTGTAAGACTGTGTCT..............................................	22	1	26.00	11.00	11.00	4.00	0.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	26.00	1.00	19.00	5.00	1.00
......................................................................................TGTTAACGGTAAGACTGTGTCT..............................................	22	1	24.00	0.00	21.00	2.00	1.00
......................................................................................TGTTAACTGTAAGACTGTG.................................................	19	1	23.00	1.00	14.00	7.00	1.00
.....................................................................................CTGTTAACTGTAAGACTGTGTCT..............................................	23	1	23.00	0.00	10.00	10.00	3.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	20.00	19.00	0.00	1.00	0.00
......................................................................................TGTTAACTGTTAGACTGTGTCT..............................................	22	1	20.00	2.00	6.00	10.00	2.00
......................................................................................AGTTAACTGTAAGACTGTGTCT..............................................	22	1	19.00	2.00	10.00	7.00	0.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	19.00	3.00	11.00	4.00	1.00
......................................................................................TGTTTACTGTAAGACTGTGTCT..............................................	22	1	19.00	1.00	6.00	11.00	1.00
......................................................................................TGTTAACTGTAAGATTGTGTCT..............................................	22	1	18.00	5.00	9.00	4.00	0.00
......................................................................................TGTTAACTGCGAGACTGTGTCT..............................................	22	1	18.00	0.00	13.00	5.00	0.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	18.00	1.00	15.00	2.00	0.00
......................................................................................TGTTAACTGTGCGACTGTGTCT..............................................	22	1	18.00	0.00	4.00	14.00	0.00
......................................................................................TGTTAACTGTATGACTGTGTCT..............................................	22	1	17.00	0.00	10.00	5.00	2.00
......................................................................................TGTTAACTGTGAGCCTGTGTCT..............................................	22	1	17.00	0.00	11.00	6.00	0.00
......................................................................................TGTTACCTGTAAGACTGTGTCT..............................................	22	1	17.00	0.00	8.00	9.00	0.00
......................................................................................TGTTAACTGTGAGACTGTGTC...............................................	21	1	16.00	4.00	8.00	4.00	0.00
......................................................................................TGTAAACTGTAAGACTGTGTCT..............................................	22	1	16.00	7.00	7.00	2.00	0.00
......................................................................................TGTTAACTGTAATACTTTGTCT..............................................	22	1	16.00	0.00	4.00	12.00	0.00
......................................................................................TGTTAACTGTGAGACTGTGTCTT.............................................	23	1	14.00	0.00	12.00	2.00	0.00
......................................................................................TGTTAACTGGGAGACTGTGTCT..............................................	22	1	14.00	0.00	10.00	4.00	0.00
........................................................................................TTAACTGTAAGACTGTGTCT..............................................	20	1	14.00	7.00	4.00	3.00	0.00
......................................................................................TGTTAACTGTAAAACTGTGTCT..............................................	22	1	14.00	0.00	6.00	8.00	0.00
......................................................................................TGGTAACTGTAAGACTGGGTCT..............................................	22	1	13.00	0.00	6.00	7.00	0.00
......................................................................................GGTTAACTGTAAGACTGTGTCT..............................................	22	1	12.00	1.00	7.00	3.00	1.00
......................................................................................TGTTAACTGTACGCCTGTGTCT..............................................	22	1	12.00	0.00	4.00	7.00	1.00
......................................................................................TGCTAACTGTGAGACTGTGTCT..............................................	22	1	12.00	0.00	8.00	4.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGACT..............................................	22	1	12.00	1.00	9.00	2.00	0.00
......................................................................................TGATAACTGCAAGACTGTGTCT..............................................	22	1	11.00	0.00	7.00	4.00	0.00
......................................................................................TGTTAACTGTGATACTGTGTCT..............................................	22	1	11.00	1.00	3.00	7.00	0.00
......................................................................................TGTTAACTGTGAGACTGTTTCT..............................................	22	1	11.00	0.00	1.00	10.00	0.00
......................................................................................TGGTAACTGTACGACTGTGTCT..............................................	22	1	11.00	0.00	3.00	8.00	0.00
......................................................................................TGTTAGCTGTGAGACTGTGTCT..............................................	22	1	11.00	1.00	4.00	6.00	0.00
......................................................................................TGGTAAGTGTAAGACTGTGTCT..............................................	22	1	10.00	0.00	8.00	0.00	2.00
......................................................................................TGTTAATTGTGAGACTGTGTCT..............................................	22	1	10.00	2.00	7.00	1.00	0.00
......................................................................................TGTTAACTGTGAGACTTTGTCT..............................................	22	1	10.00	1.00	8.00	1.00	0.00
......................................................................................TGTTAACTGAAAGACTGTGTCT..............................................	22	1	10.00	1.00	8.00	1.00	0.00
......................................................................................TGTTAACTGTAAGACTGTGTGT..............................................	22	1	10.00	1.00	6.00	2.00	1.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	10.00	0.00	8.00	1.00	1.00
......................................................................................TGTTAACTGTGAGACTGTGTCC..............................................	22	1	10.00	1.00	6.00	3.00	0.00
......................................................................................TCTTAACTGTAAGACTGTGTCT..............................................	22	1	10.00	2.00	5.00	3.00	0.00

droGri2

G----ATA--A---GGACAAGAGACAGCAG--TCGCTCAATTACCATGACATAGTCGTACGGTGAATGTTGTGT-TTGGAGTCCAATGTTAACTGTAAGACTGTGTCTTGGTGGTTGCCAGCCA----AGCAACACA-CCCAA--AACGAAAGC	Size	Hit Count	Total Norm	V109 Male body
......................................................................................TGTTAACTGTAAGACTGTGTCT..............................................	22	1	2305.00	2305.00
......................................................................................TGTTAACTGTAAGACTGTGTC...............................................	21	1	82.00	82.00
......................................................................................TGTTAACTGTGAGACTGTGTCT..............................................	22	1	80.00	80.00
......................................................................................TGTTAACTGTAAGACTGTGT................................................	20	1	70.00	70.00
......................................................................................TGTTAACTGTAAGACTGTGTCTT.............................................	23	1	33.00	33.00
......................................................................................TGTTAACTGTAAGACTGCGTCT..............................................	22	1	26.00	26.00
......................................................................................TGTTAACTGTAAGACTGAGTCT..............................................	22	1	26.00	26.00
......................................................................................TGTTAACTGTAAGACTGTGTCC..............................................	22	1	12.00	12.00
......................................................................................TGTTAACTCTAAGACTGTGTCT..............................................	22	1	11.00	11.00
......................................................................................TGTTAAATGTAAGACTGTGTCT..............................................	22	1	10.00	10.00
......................................................................................TGTTAACTGTAAGACTGGGTCT..............................................	22	1	9.00	9.00
......................................................................................TGTTACCTGTAAGACTGTGTCT..............................................	22	1	9.00	9.00
......................................................................................TGTTAACTGTAAGACTGTGTCTA.............................................	23	1	9.00	9.00
.......................................................................................GTTAACTGTAAGACTGTGTCT..............................................	21	1	8.00	8.00
......................................................................................TGATAACTGTAAGACTGTGTCT..............................................	22	1	7.00	7.00
......................................................................................TGTTAACTATAAGACTGTGTCT..............................................	22	1	7.00	7.00
......................................................................................TGTTAACTGTAAGACTGTGCCT..............................................	22	1	7.00	7.00
.......................................................................................TTTAACTGTAAGACTGTGTCT..............................................	21	1	6.00	6.00
......................................................................................TGTTAGCTGTAAGACTGTGTCT..............................................	22	1	6.00	6.00
......................................................................................TGCTAACTGTAAGACTGTGTCT..............................................	22	1	6.00	6.00
......................................................................................TGTTAACTGTAAGACTGTGTCTTT............................................	24	1	6.00	6.00
......................................................................................TGTCAACTGTAAGACTGTGTCT..............................................	22	1	5.00	5.00
......................................................................................TGTTAACTGTAAGACTGTCTCT..............................................	22	1	4.00	4.00
......................................................................................TGTTAACTGTAAGACTGTCT................................................	20	1	4.00	4.00
......................................................................................TGTTATCTGTAAGACTGTGTCT..............................................	22	1	4.00	4.00
......................................................................................TGTTAACTGTAAGACTGTTTCT..............................................	22	1	4.00	4.00
......................................................................................TGTTAACTGTACGACTGTGTCT..............................................	22	1	4.00	4.00
......................................................................................TGTTAACTTTAAGACTGTGTCT..............................................	22	1	4.00	4.00
.....................................................................................ATGTTAACTGTAAGACTGTGTCT..............................................	23	1	4.00	4.00
......................................................................................TGTTAAGTGTAAGACTGTGTCT..............................................	22	1	3.00	3.00
......................................................................................TGTTAACTGTGAGACTGAGTCT..............................................	22	1	3.00	3.00
................................................ACATAGTCGTACGGTGAATGTTG...................................................................................	23	1	3.00	3.00
......................................................................................TGTTAACTGTAAGACTATGTCT..............................................	22	1	3.00	3.00
......................................................................................TGTTAACTGTAGGACTGTGTCT..............................................	22	1	3.00	3.00
......................................................................................TGTTAACTGCAAGACTGTGTCT..............................................	22	1	3.00	3.00
......................................................................................TGTTAACTGTAAGACTGTGTCTC.............................................	23	1	3.00	3.00
......................................................................................CGTTAACTGTAAGACTGTGTCT..............................................	22	1	3.00	3.00
......................................................................................TGTTAATTGTAAGACTGTGTCT..............................................	22	1	3.00	3.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image