dme-mir-980- Best orthologs

dme-mir-980	chrX:174205-174302 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_intron

Legend:

   mature strand at position 174222-174242
   star strand at position 174264-174287
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chrX:174190-174317 -		1	GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCCTGGCTAGCTT-ACTCCTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTC-C------------------------------------------------------CGAATA---ATA
droSim1	chrX:118257-118384 -	LASTZ	1	GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTC-ACTACTT-TTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-C------------------------------------------------------CAAATA---ATA
droSec1	super_10:47183-47310 -	LASTZ	1	GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTC-ACTACTT-TTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-C------------------------------------------------------CAAATA---ATA
droYak2	chrX:117050-117182 -	LASTZ	1	GCGTGT--------G-----AGATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTT-AGCTTTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCGACTG--------------------------------------------------CCAAATG---ATA
droEre2	scaffold_4644:121637-121764 -	LASTZ	1	GCGTGT--------G-----AAATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTT-ACCTCTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGACTG-C------------------------------------------------------AAAATT---ATA
droEug1	scf7180000409277:495710-495839 -	LASTZ	4	GCGTTT--------G-----GAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTG-ACCTTTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GCA--GGA--------------------------------------------------TAA---ATG
droBia1	scf7180000301760:1131731-1131847 -	LASTZ	4	GCGGTTT-------C-----GGCGGCGAGGTTAATCATATGTCAGTTTTTCATTTGGCCTGGCTAGCTT-ACTCCT--GTTCAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGGTTGCGGCTCAACT---------------------------------------------------------------------
droTak1	scf7180000415179:121502-121639 -	LASTZ	4	GCGGTTTG------C----AGAATGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCTTGCCTAGCTG-ACTTCTG-TTTAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACTG-GCA--GGA--TGTGT-------------------------------------------GTC---CTG
droEle1	scf7180000491011:1178486-1178616 -	LASTZ	4	GCATCT--------G----AGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGACTAGCTG-ACTTTTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-ACTG-GGA---------------------------------------------------TA---TAT
droRho1	scf7180000779506:958280-958410 -	LASTZ	4	GAATATTT------G----GGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGGGCCTAGCTG-ACTTCTG-TTAAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GCAA-GGA--------------------------------------------------------TAT
droFic1	scf7180000453927:606373-606545 -	LASTZ	4	AA----------------------GTGAAGATAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTG-ACTTCTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGCTCAACTG-ACTG-AGATATATATATCCTTGAATATTCGGGATGAAACGGATAACGCAACGGGCCGGATA---AAG
droKik1	scf7180000302544:871495-871630 +	LASTZ	4	GCCTGT--------G-----GAAGTGCTAGTTAATTGTATGTCAGTTTTTCATTTGGCCTGCCTAGCTG-ACTTTC---ATAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACGG-AAAGAGGATA--T------------------------------------------AGAAGA---AGG
droAna3	scaffold_13117:4815182-4815314 -	LASTZ	1	AAGTGATAAGAAATG-----TCCTAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTG-ACTTTA--AATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-GCA--------------------------------------------------------GA---ATA
droBip1	scf7180000395508:43145-43265 +	LASTZ	4	AGATTT--------G-----TCCTTGAAAGTAAATTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTG-ACTTTA--AATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-G---------------------------------------------------------------AAA
dp4	chrXL_group1e:4097625-4097758 -	LASTZ	1	CCGCCA--------C-----AAAAGAGAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTG-ACTTGT--TTCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGT-AAAGC--------------------------------------------------CGAAAATCGTAA
droPer1	super_17:1039174-1039307 -	LASTZ	1	CCGCCA--------C-----AAAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTG-ACTTGT--TTCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGT-AAAGC--------------------------------------------------CGAAAATCGTAA
droWil1	scaffold_181096:8731771-8731891 +	LASTZ	1	---------------------------------ATTGTGTGTGAGTCTTTCACTGGGCGTGCTTAGCTAGAAATTTATTTACCATATTGCTAGCTGCCTTGTGAAGTGCTTACGTGTAATTGTTGAACAACAA-AAAA-AAATC--A---------------------------G-------------AAAAAGC---ATA
droVir3	scaffold_10277:1011-1148 -	LASTZ	1	GGGCTATAAAATTTGGACCAAATGTGAGAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTG-CTTTT-A-ATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAACTT-A--------------------------------------------------------AACA---ACA
droMoj3	scaffold_6473:11075547-11075659 +	MAF	1	TTATTT----------------ATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTG-TTTTTCA-ATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAAC----------------------------------------------------------------------
droGri2	scaffold_14853:6339037-6339158 +	LASTZ	1	GATTAT--------G-----A------GAGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTG-CTTTTCA-ATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAACTG-A------------------------------------------------------GGAAAA---ATA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCCTGGCTAGCTT-ACTCCTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTC-C------------------------------------------------------CGAATA---ATA
droSim1	GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTC-ACTACTT-TTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-C------------------------------------------------------CAAATA---ATA
droSec1	GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTC-ACTACTT-TTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-C------------------------------------------------------CAAATA---ATA
droYak2	GCGTGT--------G-----AGATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTT-AGCTTTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCGACTG--------------------------------------------------CCAAATG---ATA
droEre2	GCGTGT--------G-----AAATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTT-ACCTCTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGACTG-C------------------------------------------------------AAAATT---ATA
droEug1	GCGTTT--------G-----GAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTG-ACCTTTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GCA--GGA--------------------------------------------------TAA---ATG
droBia1	GCGGTTT-------C-----GGCGGCGAGGTTAATCATATGTCAGTTTTTCATTTGGCCTGGCTAGCTT-ACTCCT--GTTCAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGGTTGCGGCTCAACT---------------------------------------------------------------------
droTak1	GCGGTTTG------C----AGAATGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCTTGCCTAGCTG-ACTTCTG-TTTAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACTG-GCA--GGA--TGTGT-------------------------------------------GTC---CTG
droEle1	GCATCT--------G----AGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGACTAGCTG-ACTTTTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-ACTG-GGA---------------------------------------------------TA---TAT
droRho1	GAATATTT------G----GGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGGGCCTAGCTG-ACTTCTG-TTAAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GCAA-GGA--------------------------------------------------------TAT
droFic1	AA----------------------GTGAAGATAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTG-ACTTCTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGCTCAACTG-ACTG-AGATATATATATCCTTGAATATTCGGGATGAAACGGATAACGCAACGGGCCGGATA---AAG
droKik1	GCCTGT--------G-----GAAGTGCTAGTTAATTGTATGTCAGTTTTTCATTTGGCCTGCCTAGCTG-ACTTTC---ATAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACGG-AAAGAGGATA--T------------------------------------------AGAAGA---AGG
droAna3	AAGTGATAAGAAATG-----TCCTAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTG-ACTTTA--AATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-GCA--------------------------------------------------------GA---ATA
droBip1	AGATTT--------G-----TCCTTGAAAGTAAATTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTG-ACTTTA--AATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-G---------------------------------------------------------------AAA
dp4	CCGCCA--------C-----AAAAGAGAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTG-ACTTGT--TTCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGT-AAAGC--------------------------------------------------CGAAAATCGTAA
droPer1	CCGCCA--------C-----AAAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTG-ACTTGT--TTCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGT-AAAGC--------------------------------------------------CGAAAATCGTAA
droWil1	---------------------------------ATTGTGTGTGAGTCTTTCACTGGGCGTGCTTAGCTAGAAATTTATTTACCATATTGCTAGCTGCCTTGTGAAGTGCTTACGTGTAATTGTTGAACAACAA-AAAA-AAATC--A---------------------------G-------------AAAAAGC---ATA
droVir3	GGGCTATAAAATTTGGACCAAATGTGAGAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTG-CTTTT-A-ATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAACTT-A--------------------------------------------------------AACA---ACA
droMoj3	TTATTT----------------ATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTG-TTTTTCA-ATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAAC----------------------------------------------------------------------
droGri2	GATTAT--------G-----A------GAGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTG-CTTTTCA-ATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAACTG-A------------------------------------------------------GGAAAA---ATA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTC-ACTACTT-TTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-C------------------------------------------------------CAAATA---ATA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	728.00	497.00	170.00	46.00	15.00
...........................................AGTTTTTCATTTGGCGTGGCTAGC......................................................................................................................................	24	1	82.00	43.00	15.00	3.00	21.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	81.00	67.00	8.00	1.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	18.00	0.00	17.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	11.00	0.00	9.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	7.00	7.00	0.00	0.00	0.00
...........................................AGTTTTTCATTTGGCGTGGCTAG.......................................................................................................................................	23	1	6.00	2.00	2.00	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	4.00	0.00	3.00	1.00	0.00
...........................................AGTTTTTCATTTGGCGTGGCTAAC......................................................................................................................................	24	1	3.00	0.00	1.00	0.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	3.00	2.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAGC.......................................................................................	24	1	2.00	0.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGCCTT..........................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	2.00	1.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCC...........................................................................................	20	1	2.00	0.00	2.00	0.00	0.00
...........................................AGTTTTTCATTCGGCGGG............................................................................................................................................	18	2	1.00	0.00	0.50	0.00	0.50
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
...........................................AGTTTTTCATTTGGCGTGGCTAA.......................................................................................................................................	23	1	2.00	0.00	0.00	0.00	2.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	2.00	2.00	0.00	0.00	0.00
...........................................AGTTTTTCATTTGGCGTGGCT.........................................................................................................................................	21	1	2.00	0.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCT...........................................................................................	20	1	2.00	0.00	0.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGTTGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...........................................AGTTTTTCATTTTGCGTGGCTATC......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
.................................................TCATTTGGCGTGGCTAAC......................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCG...........................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGCTTA.........................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...........................................AGTTTTTCATTTGGCGTGGCTAGG......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
...........................................AGTTTTCCATTTGGCGTGGCTAGC......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCGT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTG..........................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGTTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................TAGCTGTCTTGTGATGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...........................................AGGTTTTCATTTGGCGTGGCTAGC......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCCGCCTTGGGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGTCGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCGGCATTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGGTGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...........................................AGTTTTTCATTTGGCGCTGCTAGC......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
...........................................AGTTTTTCATTTGGCGTGGCTCGC......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTTA.........................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................TAGCTCCCTTGTGAAGGGCT...........................................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGTAGGGCGT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCGT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...........................................AGTTTTTCATTTGGCGTGGC..........................................................................................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTCGCGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...........................................CGATTTTCATTTGGCGTGGCTAGC......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
...........................................AGATTTTCATTTGGCGTGGCTAGA......................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGATGTCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.................................................TCATTTGGCGTGGCTAGC......................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTxxTGAAGGGCT...........................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................AGTTTTTCATTTGGATTGGCTAGC......................................................................................................................................	24	1	1.00	0.00	0.00	0.00	1.00
..........................................................................................TAGCTGACTTGGGAAGGGCTTA.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGGTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................TAGAGGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	1.00	1.00	0.00	0.00	0.00

droSec1

GCGTGT--------G-----AAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGGCTAGCTC-ACTACTT-TTTTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCAACTG-C------------------------------------------------------CAAATA---ATA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	24461.00	6496.00	11016.00	6949.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	2395.00	380.00	1722.00	293.00
...........................................AGTTTTTCATTTGGCGTGGCTAGC......................................................................................................................................	24	1	955.00	38.00	804.00	113.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	117.00	3.00	68.00	46.00
..........................................................................................TAGCTGCCTTGTGAAGGG.............................................................................................	18	1	90.00	1.00	78.00	11.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	89.00	45.00	6.00	38.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	68.00	42.00	15.00	11.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	66.00	31.00	18.00	17.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	65.00	32.00	19.00	14.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	64.00	52.00	4.00	8.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	60.00	2.00	55.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	53.00	1.00	4.00	48.00
...........................................AGTTTTTCATTTGGCGTGGCTAG.......................................................................................................................................	23	1	52.00	9.00	38.00	5.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	42.00	27.00	10.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	42.00	10.00	22.00	10.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	40.00	2.00	35.00	3.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	40.00	10.00	16.00	14.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	38.00	4.00	23.00	11.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	37.00	14.00	13.00	10.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	34.00	0.00	34.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	34.00	6.00	23.00	5.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	32.00	9.00	15.00	8.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	32.00	8.00	14.00	10.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	31.00	9.00	14.00	8.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	31.00	13.00	12.00	6.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	29.00	12.00	15.00	2.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	28.00	7.00	14.00	7.00
..........................................................................................TAGCTGCCTTGTGAAGGGGTT..........................................................................................	21	1	25.00	24.00	0.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	24.00	6.00	10.00	8.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	24.00	3.00	15.00	6.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTT..........................................................................................	19	1	22.00	4.00	10.00	8.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	22.00	0.00	2.00	20.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	20.00	6.00	10.00	4.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	20.00	2.00	8.00	10.00
...........................................AGTTTTTCATTTGGCGTGGCT.........................................................................................................................................	21	1	19.00	5.00	6.00	8.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	18.00	2.00	3.00	13.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	18.00	7.00	5.00	6.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	17.00	3.00	9.00	5.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTTA.........................................................................................	22	1	17.00	0.00	17.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	16.00	8.00	5.00	3.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	16.00	3.00	9.00	4.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	2.00	4.00	9.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	15.00	3.00	6.00	6.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	15.00	4.00	8.00	3.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	14.00	2.00	6.00	6.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	13.00	0.00	5.00	8.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	13.00	1.00	11.00	1.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	12.00	5.00	1.00	6.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTT........................................................................................	23	1	12.00	8.00	0.00	4.00
..........................................................................................TAGCTxCCTTGTGAAGGGCTT..........................................................................................	20	2	6.00	1.50	3.00	1.50
..........................................................................................TAGCTGCCTTGTGAAGGGCAT..........................................................................................	21	1	12.00	1.00	2.00	9.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	12.00	2.00	9.00	1.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTTA.........................................................................................	22	1	12.00	0.00	12.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	12.00	1.00	8.00	3.00
..........................................................................................TTGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	11.00	0.00	8.00	3.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	11.00	3.00	6.00	2.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	11.00	2.00	6.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	11.00	3.00	3.00	5.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTTA.........................................................................................	22	1	11.00	0.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTATT.......................................................................................	24	1	10.00	5.00	0.00	5.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	10.00	4.00	3.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	10.00	3.00	6.00	1.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	10.00	1.00	7.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAC........................................................................................	23	1	10.00	5.00	3.00	2.00
..........................................................................................AAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	9.00	1.00	2.00	6.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	8.00	2.00	2.00	4.00
..........................................................................................TAGCTGCCATGTGAAGGGCTT..........................................................................................	21	1	8.00	1.00	5.00	2.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	8.00	4.00	2.00	2.00
..........................................................................................TAGCAGCCTTGTGAAGGGCTT..........................................................................................	21	1	7.00	3.00	3.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTA..........................................................................................	21	1	7.00	3.00	3.00	1.00
..........................................................................................TAGCTGCCTTGTGxAGGGCTT..........................................................................................	20	1	7.00	1.00	5.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	7.00	3.00	1.00	3.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	6.00	3.00	3.00	0.00
............................................AGTTTTCATTTGGCGTGGCTAGC......................................................................................................................................	23	1	6.00	0.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTTA.........................................................................................	22	1	6.00	0.00	6.00	0.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTT..........................................................................................	21	1	6.00	1.00	4.00	1.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTTA.........................................................................................	22	1	6.00	0.00	4.00	2.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	6.00	0.00	3.00	3.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	1.00	3.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTG.........................................................................................	22	1	6.00	3.00	2.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	6.00	2.00	1.00	3.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	0.00	3.00	3.00
..........................................................................................TAGCTGCCTAGTGAAGGGCTT..........................................................................................	21	1	5.00	0.00	3.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	5.00	2.00	1.00	2.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTTA.........................................................................................	23	1	5.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTTA.........................................................................................	22	1	4.00	2.00	2.00	0.00
...........................................AGTTTTTCATTTGGCGTGGCTAGCT.....................................................................................................................................	25	1	4.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTTA.........................................................................................	22	1	4.00	0.00	4.00	0.00
...........................................AGTTTTTCATTTGGCGTGGCTA........................................................................................................................................	22	1	4.00	0.00	3.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGATTA.........................................................................................	22	1	4.00	2.00	2.00	0.00
..........................................................................................TAGCTGGCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	1.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTTA.........................................................................................	22	1	4.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCTA.........................................................................................	22	1	4.00	1.00	2.00	1.00
..........................................................................................TAGCTGCCTTGTxAAGGGCTT..........................................................................................	20	1	3.00	1.00	1.00	1.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	3.00	0.00	3.00	0.00
............................................................................................GCTGCCTTGTGAAGGGCTT..........................................................................................	19	1	3.00	0.00	2.00	1.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTTA.........................................................................................	22	1	3.00	0.00	3.00	0.00
............................................AGTTTTCATTTGGCGTGGCTAG.......................................................................................................................................	22	1	3.00	0.00	3.00	0.00
..........................................................................................TACCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	3.00	0.00	2.00	1.00
..........................................................................................TAGCTGCCxTGTGAAGGGCTT..........................................................................................	20	1	3.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAATGGCTTA.........................................................................................	22	1	3.00	0.00	2.00	1.00

droYak2

GCGTGT--------G-----AGATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTT-AGCTTTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCGACTG--------------------------------------------------CCAAATG---ATA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	8709.00	663.00	1835.00	2233.00	3957.00	21.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	880.00	77.00	177.00	175.00	450.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	117.00	10.00	35.00	1.00	70.00	1.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	115.00	1.00	17.00	3.00	94.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	68.00	1.00	16.00	11.00	39.00	1.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	64.00	2.00	6.00	0.00	56.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	51.00	1.00	7.00	6.00	37.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	41.00	0.00	12.00	8.00	21.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	32.00	2.00	1.00	1.00	28.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	32.00	0.00	4.00	0.00	28.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	30.00	0.00	3.00	0.00	27.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	27.00	0.00	8.00	2.00	17.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	24.00	1.00	1.00	0.00	22.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	23.00	0.00	2.00	8.00	13.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	20.00	3.00	3.00	3.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	20.00	0.00	8.00	2.00	10.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	20.00	2.00	4.00	4.00	10.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGTGCTT..........................................................................................	21	1	17.00	0.00	6.00	0.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	16.00	0.00	4.00	2.00	10.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	15.00	7.00	1.00	5.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTG.........................................................................................	22	1	15.00	0.00	3.00	3.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGGTT..........................................................................................	21	1	14.00	1.00	4.00	0.00	9.00	0.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTT..........................................................................................	21	1	14.00	0.00	4.00	0.00	10.00	0.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	14.00	0.00	0.00	4.00	10.00	0.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	14.00	3.00	1.00	0.00	10.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	13.00	0.00	3.00	1.00	9.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	13.00	0.00	4.00	5.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	13.00	1.00	1.00	0.00	11.00	0.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	12.00	0.00	1.00	3.00	8.00	0.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	12.00	1.00	5.00	1.00	5.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	12.00	0.00	2.00	3.00	7.00	0.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	11.00	0.00	0.00	11.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTT........................................................................................	23	1	11.00	0.00	2.00	2.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTA.........................................................................................	22	1	11.00	0.00	0.00	0.00	11.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	10.00	3.00	0.00	1.00	6.00	0.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	10.00	0.00	2.00	1.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	9.00	0.00	1.00	4.00	4.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	9.00	0.00	2.00	2.00	5.00	0.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	9.00	0.00	4.00	2.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCGT..........................................................................................	21	1	8.00	1.00	4.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	8.00	0.00	1.00	3.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGG.............................................................................................	18	1	8.00	0.00	4.00	2.00	2.00	0.00
...........................................AGTTTTTCATTTGGCGTGCCTAGC......................................................................................................................................	24	1	8.00	6.00	0.00	1.00	1.00	0.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	8.00	1.00	1.00	2.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTTA.........................................................................................	22	1	8.00	1.00	1.00	0.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	8.00	1.00	1.00	2.00	4.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	8.00	0.00	2.00	4.00	2.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	7.00	0.00	1.00	0.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	7.00	0.00	1.00	2.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	7.00	0.00	2.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	7.00	0.00	3.00	0.00	4.00	0.00
..........................................................................................AAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	7.00	0.00	3.00	0.00	4.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	0.00	2.00	0.00	4.00	0.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	0.00	1.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTG..........................................................................................	21	1	6.00	0.00	2.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	6.00	0.00	1.00	1.00	4.00	0.00
..........................................................................................TAGCTGCGTTGTGAAGGGCTT..........................................................................................	21	1	6.00	0.00	1.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGCCGGGCTT..........................................................................................	21	1	6.00	0.00	1.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	6.00	0.00	4.00	1.00	1.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	6.00	0.00	3.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGCGTAGGGCTT..........................................................................................	21	1	6.00	0.00	1.00	0.00	5.00	0.00
..........................................................................................TAGCAGCCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	0.00	0.00	0.00	5.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	5.00	1.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTTA.........................................................................................	22	1	5.00	0.00	2.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTG..........................................................................................	21	1	5.00	1.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTATT.......................................................................................	24	1	5.00	0.00	0.00	3.00	2.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	0.00	0.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTTA.........................................................................................	22	1	5.00	2.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCGGCCTTGGGAAGGGCTT..........................................................................................	21	1	5.00	0.00	2.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTTA.........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	1.00	0.00	3.00	0.00
..........................................................................................TAGCGGCCGTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAC........................................................................................	23	1	4.00	1.00	0.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	4.00	0.00	1.00	1.00	2.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	1.00	1.00	0.00	2.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	2.00	0.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGTTGGGCTT..........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	4.00	1.00	1.00	0.00	2.00	0.00
..........................................................................................TAGCTGCCTGGTGAGGGGCTT..........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTC.........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGGGTAGGGCTT..........................................................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................................................................................TAGCGGCCTTGTGAGGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCGT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGGCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................................................................................TGGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCGGCCTTGTGGAGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGTGGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGACGTGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTTA.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	3.00	0.00	1.00	1.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAAA.......................................................................................	24	1	3.00	0.00	1.00	1.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTTCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TCGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TACCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGCGGAGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCT...........................................................................................	20	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGGGAGGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00

droEre2

GCGTGT--------G-----AAATGTGAAGTTGATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTT-ACCTCTT-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGTAGTTCGACTG-C------------------------------------------------------AAAATT---ATA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	24917.00	543.00	4711.00	0.00	19663.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	1914.00	54.00	668.00	0.00	1192.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	309.00	5.00	13.00	0.00	291.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	278.00	5.00	71.00	0.00	202.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	230.00	5.00	38.00	0.00	187.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	184.00	4.00	4.00	0.00	176.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	172.00	1.00	6.00	0.00	165.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	164.00	3.00	2.00	0.00	159.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	154.00	0.00	6.00	0.00	148.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	145.00	0.00	6.00	0.00	139.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	143.00	8.00	33.00	0.00	102.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	131.00	1.00	15.00	0.00	115.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	129.00	0.00	2.00	0.00	127.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	99.00	1.00	35.00	0.00	63.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	79.00	1.00	21.00	0.00	57.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	77.00	3.00	7.00	0.00	67.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	71.00	2.00	3.00	0.00	66.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	69.00	3.00	58.00	0.00	8.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	54.00	3.00	4.00	0.00	47.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	48.00	0.00	27.00	0.00	21.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	44.00	0.00	15.00	0.00	29.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	39.00	1.00	7.00	0.00	31.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	39.00	1.00	5.00	0.00	33.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	38.00	0.00	18.00	0.00	20.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	37.00	0.00	11.00	0.00	26.00
..........................................................................................TAGCTGCCTTGTGAAGGG.............................................................................................	18	1	35.00	0.00	0.00	0.00	35.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	35.00	0.00	7.00	0.00	28.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	31.00	0.00	26.00	0.00	5.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	31.00	0.00	6.00	0.00	25.00
...........................................AGTTTTTCATTTGGCGTGCCTAGC......................................................................................................................................	24	1	30.00	0.00	1.00	0.00	29.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	28.00	0.00	4.00	0.00	24.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	27.00	0.00	9.00	0.00	18.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	26.00	0.00	4.00	0.00	22.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	24.00	1.00	5.00	0.00	18.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	24.00	1.00	4.00	0.00	19.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	23.00	1.00	13.00	0.00	9.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	23.00	0.00	5.00	0.00	18.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	22.00	1.00	7.00	0.00	14.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	22.00	1.00	4.00	0.00	17.00
..........................................................................................TAGCTGCCTTGTGAATGGCTTA.........................................................................................	22	1	22.00	0.00	2.00	0.00	20.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	21.00	0.00	3.00	0.00	18.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	21.00	0.00	2.00	0.00	19.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	21.00	1.00	1.00	0.00	19.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	20.00	1.00	6.00	0.00	13.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	20.00	1.00	12.00	0.00	7.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	20.00	2.00	4.00	0.00	14.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	18.00	1.00	5.00	0.00	12.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	18.00	0.00	1.00	0.00	17.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	17.00	2.00	1.00	0.00	14.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	17.00	0.00	4.00	0.00	13.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	16.00	1.00	1.00	0.00	14.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	15.00	0.00	5.00	0.00	10.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTG.........................................................................................	22	1	15.00	0.00	5.00	0.00	10.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	14.00	1.00	1.00	0.00	12.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTT..........................................................................................	19	1	14.00	0.00	0.00	0.00	14.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	13.00	2.00	1.00	0.00	10.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	13.00	2.00	4.00	0.00	7.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTTA.........................................................................................	22	1	13.00	1.00	6.00	0.00	6.00
..........................................................................................TATCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	12.00	0.00	0.00	0.00	12.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	12.00	0.00	6.00	0.00	6.00
..........................................................................................TAGGTGCCTTGTGAAGGGCTT..........................................................................................	21	1	11.00	0.00	0.00	0.00	11.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	11.00	0.00	7.00	0.00	4.00
..........................................................................................TAGCTGACTTGTGAAGGGCTTA.........................................................................................	22	1	11.00	0.00	1.00	0.00	10.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTT..........................................................................................	21	1	10.00	1.00	9.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTT........................................................................................	23	1	10.00	0.00	3.00	0.00	7.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTT..........................................................................................	21	1	9.00	1.00	4.00	0.00	4.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTA..........................................................................................	21	1	9.00	1.00	4.00	0.00	4.00
..........................................................................................TCGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	9.00	0.00	0.00	0.00	9.00
..........................................................................................TAGCTGCCTTGTGAAGGGATTA.........................................................................................	22	1	9.00	0.00	2.00	0.00	7.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTTA.........................................................................................	22	1	8.00	0.00	1.00	0.00	7.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTG..........................................................................................	21	1	7.00	0.00	5.00	0.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGCTT...........................................................................................	20	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................TAGCTGCCTTGTGAAGGGGTT..........................................................................................	21	1	7.00	1.00	5.00	0.00	1.00
..........................................................................................TAGCTGCGTTGTGAAGGGCTT..........................................................................................	21	1	7.00	0.00	6.00	0.00	1.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	7.00	0.00	1.00	0.00	6.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	7.00	0.00	6.00	0.00	1.00
..........................................................................................TAGCTGCATTGTGAAGGGCTTA.........................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................TAGCTGCCTTGTGxAGGGCTT..........................................................................................	20	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................TAGATGCCTTGTGAAGGGCTTA.........................................................................................	22	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................TAGCTTCCTTGTGAAGTGCTT..........................................................................................	21	1	6.00	1.00	0.00	0.00	5.00
............................................................................................GCTGCCTTGTGAAGGGCTT..........................................................................................	19	1	6.00	0.00	1.00	0.00	5.00
..........................................................................................TAGCTGACTTGTGAAGGGATT..........................................................................................	21	1	6.00	0.00	0.00	0.00	6.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAC........................................................................................	23	1	6.00	0.00	1.00	0.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTATT.......................................................................................	24	1	6.00	0.00	4.00	0.00	2.00
..........................................................................................TAGCTGCCTTGTTAAGTGCTT..........................................................................................	21	1	6.00	0.00	2.00	0.00	4.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTTA.........................................................................................	22	1	6.00	0.00	2.00	0.00	4.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTTA.........................................................................................	22	1	6.00	0.00	1.00	0.00	5.00
..........................................................................................TAGCTGCCTTGTGAATGGCT...........................................................................................	20	1	5.00	0.00	1.00	0.00	4.00
..........................................................................................TAGCTGCCATGTGAAGGGCTT..........................................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................TAGCTGCCTTGTGCCGGGCTT..........................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
..........................................................................................TAGCTxCCTTGTGAAGGGCTT..........................................................................................	20	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTTA.........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTA.........................................................................................	22	1	5.00	0.00	4.00	0.00	1.00
..........................................................................................TAGATGCCTTGTGAAGGGATT..........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTTT.........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	4.00	1.00	2.00	0.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCGT..........................................................................................	21	1	4.00	2.00	2.00	0.00	0.00
...........................................AGTTTTTCATTTGGCGTGCCTAG.......................................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................AAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	1.00	0.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00

droEug1

GCGTTT--------G-----GAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTG-ACCTTTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GCA--GGA--------------------------------------------------TAA---ATG

Size

Hit Count

Total Norm

droBia1

GCGGTTT-------C-----GGCGGCGAGGTTAATCATATGTCAGTTTTTCATTTGGCCTGGCTAGCTT-ACTCCT--GTTCAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGGTTGCGGCTCAACT---------------------------------------------------------------------

Size

Hit Count

Total Norm

droTak1

GCGGTTTG------C----AGAATGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCTTGCCTAGCTG-ACTTCTG-TTTAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACTG-GCA--GGA--TGTGT-------------------------------------------GTC---CTG

Size

Hit Count

Total Norm

droEle1

GCATCT--------G----AGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGTGACTAGCTG-ACTTTTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-ACTG-GGA---------------------------------------------------TA---TAT

Size

Hit Count

Total Norm

droRho1

GAATATTT------G----GGAAAGTGAAGTTAATTGTATGTCAGTTTTTCATTTGGCGGGCCTAGCTG-ACTTCTG-TTAAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCAGCTCAACTG-GCAA-GGA--------------------------------------------------------TAT

Size

Hit Count

Total Norm

droFic1

AA----------------------GTGAAGATAATTGTATGTCAGTTTTTCATTTGGCGTGCCTAGCTG-ACTTCTG-TTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGCTCAACTG-ACTG-AGATATATATATCCTTGAATATTCGGGATGAAACGGATAACGCAACGGGCCGGATA---AAG

Size

Hit Count

Total Norm

droKik1

GCCTGT--------G-----GAAGTGCTAGTTAATTGTATGTCAGTTTTTCATTTGGCCTGCCTAGCTG-ACTTTC---ATAAATATCGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGGTTCAACGG-AAAGAGGATA--T------------------------------------------AGAAGA---AGG

Size

Hit Count

Total Norm

droAna3

AAGTGATAAGAAATG-----TCCTAGGAAGTAATTTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTG-ACTTTA--AATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-GCA--------------------------------------------------------GA---ATA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	27675.00	10045.00	14093.00	3458.00	79.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	1525.00	501.00	492.00	527.00	5.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	563.00	89.00	469.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	193.00	48.00	131.00	14.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTA..........................................................................................	21	1	181.00	90.00	90.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	181.00	76.00	53.00	52.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	164.00	52.00	102.00	9.00	1.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	162.00	43.00	118.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	145.00	3.00	16.00	126.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	125.00	44.00	72.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	120.00	36.00	75.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	115.00	31.00	50.00	34.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	95.00	52.00	38.00	5.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	91.00	34.00	30.00	27.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTG..........................................................................................	21	1	82.00	62.00	18.00	2.00	0.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	81.00	13.00	42.00	25.00	1.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	79.00	33.00	33.00	13.00	0.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTT..........................................................................................	21	1	78.00	64.00	6.00	8.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	74.00	18.00	45.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	69.00	28.00	34.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	69.00	12.00	42.00	15.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	65.00	7.00	43.00	15.00	0.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	60.00	47.00	9.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	49.00	11.00	21.00	17.00	0.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	48.00	31.00	6.00	11.00	0.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	48.00	38.00	5.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	48.00	36.00	9.00	3.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	42.00	20.00	3.00	19.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTG.........................................................................................	22	1	42.00	9.00	15.00	18.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	39.00	12.00	15.00	11.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	39.00	12.00	10.00	17.00	0.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	37.00	8.00	23.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	36.00	5.00	7.00	24.00	0.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	36.00	15.00	19.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	36.00	7.00	11.00	18.00	0.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	36.00	20.00	11.00	5.00	0.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	34.00	24.00	5.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	33.00	11.00	16.00	5.00	1.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	32.00	9.00	17.00	6.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	31.00	5.00	20.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	31.00	15.00	3.00	13.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	31.00	9.00	16.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGG.............................................................................................	18	1	30.00	2.00	23.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	30.00	1.00	8.00	21.00	0.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	25.00	0.00	0.00	25.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTT........................................................................................	23	1	24.00	11.00	4.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	24.00	4.00	5.00	15.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	24.00	6.00	11.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	23.00	5.00	6.00	12.00	0.00
..........................................................................................TATCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	22.00	7.00	15.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	21.00	6.00	8.00	6.00	1.00
..........................................................................................AAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	19.00	8.00	1.00	10.00	0.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	19.00	3.00	13.00	3.00	0.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTT..........................................................................................	19	1	18.00	6.00	12.00	0.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	17.00	4.00	10.00	3.00	0.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	17.00	6.00	10.00	1.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	16.00	8.00	5.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	15.00	1.00	8.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	15.00	0.00	1.00	14.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	2.00	2.00	11.00	0.00
..........................................................................................TAGCAGCCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	2.00	2.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	14.00	3.00	7.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	14.00	5.00	3.00	6.00	0.00
..........................................................................................TAGCTGGCTTGTGAAGGGCTT..........................................................................................	21	1	14.00	2.00	2.00	10.00	0.00
..........................................................................................TAGCTxCCTTGTGAAGGGCTT..........................................................................................	20	1	14.00	6.00	8.00	0.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGATT..........................................................................................	21	1	14.00	6.00	8.00	0.00	0.00
..........................................................................................TAGGTGCCTTGTGAAGGGCTT..........................................................................................	21	1	13.00	5.00	4.00	4.00	0.00
..........................................................................................TATCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	13.00	2.00	8.00	3.00	0.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	13.00	9.00	1.00	3.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGGTCTT..........................................................................................	21	1	12.00	3.00	9.00	0.00	0.00
..........................................................................................TATCTGCCTTGTGAATGGCTT..........................................................................................	21	1	11.00	1.00	10.00	0.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGATT..........................................................................................	21	1	11.00	2.00	9.00	0.00	0.00
..........................................................................................TCGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	9.00	6.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTT..........................................................................................	21	1	9.00	0.00	1.00	8.00	0.00
..........................................................................................TATCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	9.00	2.00	7.00	0.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	9.00	2.00	1.00	6.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTTA.........................................................................................	22	1	9.00	3.00	6.00	0.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTTA.........................................................................................	22	1	8.00	1.00	0.00	7.00	0.00
..........................................................................................TAGCTGCGTTGTGAAGGGCTT..........................................................................................	21	1	8.00	1.00	2.00	5.00	0.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	8.00	1.00	5.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATTA.........................................................................................	22	1	7.00	0.00	5.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAAA.......................................................................................	24	1	7.00	0.00	1.00	6.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGCTTA.........................................................................................	22	1	7.00	2.00	3.00	2.00	0.00
..........................................................................................TAGCTGCCATGTGAAGGGCTT..........................................................................................	21	1	7.00	4.00	2.00	1.00	0.00
..........................................................................................TAGATGACTTGTGAAGGGCTT..........................................................................................	21	1	7.00	2.00	3.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	6.00	3.00	2.00	0.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTTA.........................................................................................	22	1	6.00	1.00	3.00	2.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	6.00	1.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAAG.......................................................................................	24	1	6.00	0.00	3.00	3.00	0.00
..........................................................................................TATCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTA.........................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	5.00	1.00	2.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCTT...........................................................................................	20	1	5.00	3.00	2.00	0.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTTA.........................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGGTT..........................................................................................	21	1	5.00	0.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTTA.........................................................................................	22	1	5.00	4.00	0.00	1.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	5.00	2.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTTA.........................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTGGTGAACGGCTT..........................................................................................	21	1	5.00	0.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCGT..........................................................................................	21	1	5.00	0.00	0.00	5.00	0.00
............................................................................................GCTGCCTTGTGAAGGGCTT..........................................................................................	19	1	5.00	3.00	1.00	1.00	0.00

droBip1

AGATTT--------G-----TCCTTGAAAGTAAATTGTATGTCAGCCTCTCATTTGGCCTGCCTAGCTG-ACTTTA--AATTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGCGATTCAACTT-G---------------------------------------------------------------AAA

Size

Hit Count

Total Norm

dp4

CCGCCA--------C-----AAAAGAGAAACAAATTGAATGTGAGTCTCTCACATGGCTGGTCTAGCTG-ACTTGT--TTCTAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGT-AAAGC--------------------------------------------------CGAAAATCGTAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	8051.00	3737.00	505.00	3809.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	1102.00	217.00	87.00	798.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	169.00	4.00	4.00	161.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	88.00	26.00	1.00	61.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	31.00	2.00	3.00	26.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	27.00	5.00	2.00	20.00	0.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	26.00	6.00	4.00	16.00	0.00
...........................................AGTCTCTCACATGGCTGGTCTAGC......................................................................................................................................	24	1	19.00	0.00	14.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	17.00	3.00	1.00	13.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	16.00	2.00	1.00	13.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	16.00	0.00	0.00	16.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	16.00	7.00	1.00	8.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	16.00	5.00	3.00	8.00	0.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	6.00	1.00	8.00	0.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	10.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	15.00	0.00	3.00	12.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	14.00	4.00	1.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	14.00	1.00	0.00	12.00	1.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	14.00	3.00	2.00	9.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	13.00	2.00	0.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	13.00	3.00	0.00	10.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	12.00	7.00	0.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	11.00	4.00	1.00	6.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	10.00	1.00	2.00	7.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	10.00	4.00	1.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTT........................................................................................	23	1	10.00	4.00	0.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAC........................................................................................	23	1	10.00	2.00	0.00	8.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	10.00	3.00	1.00	6.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	10.00	8.00	1.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	9.00	2.00	1.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	9.00	2.00	1.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	9.00	6.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	9.00	2.00	1.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGT............................................................................................	19	1	8.00	5.00	0.00	3.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	8.00	4.00	0.00	4.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	8.00	5.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	7.00	1.00	0.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	7.00	0.00	0.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	7.00	0.00	5.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	7.00	1.00	1.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGG.............................................................................................	18	1	7.00	0.00	1.00	6.00	0.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTT..........................................................................................	19	1	7.00	7.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	7.00	2.00	1.00	4.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	6.00	1.00	3.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	6.00	1.00	0.00	5.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	2.00	1.00	3.00	0.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	1.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	5.00	3.00	0.00	2.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTTA.........................................................................................	22	1	5.00	1.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	5.00	2.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTA.........................................................................................	22	1	5.00	1.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTTA.........................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
...........................................AGTCTCTCACATGGCTGGTCTAG.......................................................................................................................................	23	1	5.00	0.00	3.00	2.00	0.00
..........................................................................................TAGCTGCCTTGCGTAGGGCTT..........................................................................................	21	1	5.00	0.00	1.00	4.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	1.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTTA.........................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	2.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCAGCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	1.00	0.00	3.00	0.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	2.00	0.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCGT..........................................................................................	21	1	4.00	0.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	4.00	2.00	0.00	2.00	0.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	4.00	0.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCxTGTGAAGGGCTT..........................................................................................	20	1	3.00	1.00	1.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTTA.........................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
...........................................AGTCTCTCACATGGCTGGTCT.........................................................................................................................................	21	1	3.00	0.00	0.00	1.00	2.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	3.00	2.00	0.00	1.00	0.00
..........................................................................................TAGCTGGCTTGTGAAGGGGTT..........................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..........................................................................................TAGCTGCGTTGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
..........................................................................................AAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	1.00	0.00	2.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGGTT..........................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCATGTGAAGGGCTT..........................................................................................	21	1	3.00	2.00	0.00	1.00	0.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTT..........................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
............................................................................................GCTGCCTTGTGAAGGGCTT..........................................................................................	19	1	3.00	0.00	2.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	3.00	1.00	0.00	2.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	0.00	3.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTTA.........................................................................................	23	1	3.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTxCCTTGTGAAGGGCTT..........................................................................................	20	1	3.00	3.00	0.00	0.00	0.00

droPer1

CCGCCA--------C-----AAAAGAGAAACAAATTGTATGTGAGTCTCTCACATGGCTGGTCTAGCTG-ACTTGT--TTCTAATACTGCTAGCTGCCTTGTGAAGGGCTTACGTGTTTTTGTAGCCCAACGT-AAAGC--------------------------------------------------CGAAAATCGTAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	28452.00	10451.00	175.00	4070.00	13752.00	4.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	3115.00	264.00	20.00	766.00	2063.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	739.00	27.00	2.00	144.00	563.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	271.00	55.00	0.00	40.00	176.00	0.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	126.00	46.00	0.00	6.00	74.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	118.00	9.00	1.00	9.00	99.00	0.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	114.00	0.00	0.00	2.00	112.00	0.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	108.00	86.00	0.00	0.00	22.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	104.00	1.00	3.00	25.00	75.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	90.00	1.00	1.00	5.00	83.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	87.00	1.00	0.00	10.00	76.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	84.00	5.00	0.00	11.00	68.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	81.00	0.00	0.00	3.00	78.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	79.00	8.00	0.00	5.00	66.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	66.00	10.00	0.00	2.00	54.00	0.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	59.00	42.00	0.00	0.00	17.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	59.00	3.00	0.00	7.00	49.00	0.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTT..........................................................................................	21	1	57.00	2.00	0.00	2.00	53.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	53.00	11.00	0.00	8.00	34.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	52.00	13.00	1.00	3.00	35.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	52.00	6.00	0.00	6.00	40.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	51.00	1.00	0.00	15.00	34.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	50.00	3.00	0.00	12.00	35.00	0.00
..........................................................................................TAGCAGCCTTGTGAAGGGCTT..........................................................................................	21	1	50.00	0.00	0.00	3.00	47.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	48.00	8.00	0.00	8.00	32.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	46.00	6.00	1.00	11.00	28.00	0.00
..........................................................................................AAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	46.00	14.00	0.00	5.00	27.00	0.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	45.00	14.00	0.00	5.00	26.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	45.00	2.00	0.00	12.00	31.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGG.............................................................................................	18	1	41.00	7.00	0.00	7.00	27.00	0.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	41.00	4.00	0.00	2.00	35.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	40.00	0.00	0.00	1.00	39.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	38.00	12.00	0.00	10.00	16.00	0.00
..........................................................................................TAGCTGCGTTGTGAAGGGCTT..........................................................................................	21	1	37.00	0.00	0.00	0.00	37.00	0.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	37.00	5.00	0.00	22.00	10.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	36.00	8.00	0.00	4.00	24.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	36.00	5.00	1.00	5.00	25.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	36.00	3.00	1.00	2.00	30.00	0.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	35.00	9.00	0.00	5.00	21.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	34.00	0.00	0.00	5.00	29.00	0.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	33.00	1.00	0.00	3.00	29.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	32.00	12.00	0.00	3.00	17.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	32.00	3.00	0.00	5.00	24.00	0.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	30.00	12.00	1.00	6.00	11.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	29.00	7.00	0.00	5.00	17.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	29.00	3.00	1.00	3.00	22.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	29.00	0.00	0.00	4.00	25.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	28.00	2.00	0.00	4.00	22.00	0.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	27.00	7.00	0.00	2.00	18.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGGTT..........................................................................................	21	1	26.00	0.00	0.00	3.00	23.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	24.00	0.00	0.00	0.00	24.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	24.00	1.00	0.00	1.00	22.00	0.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	24.00	2.00	0.00	5.00	17.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	22.00	3.00	0.00	5.00	14.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	22.00	3.00	0.00	3.00	16.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGTGCTT..........................................................................................	21	1	21.00	0.00	0.00	1.00	20.00	0.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	20.00	5.00	0.00	3.00	12.00	0.00
...........................................AGTCTCTCACATGGCTGGGCTAGC......................................................................................................................................	24	1	20.00	0.00	1.00	0.00	0.00	19.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	19.00	4.00	0.00	2.00	13.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCGT..........................................................................................	21	1	19.00	1.00	0.00	2.00	16.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGCGCTT..........................................................................................	21	1	19.00	0.00	0.00	1.00	18.00	0.00
..........................................................................................TAGCGGCCTTGGGAAGGGCTT..........................................................................................	21	1	18.00	0.00	0.00	0.00	18.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTTA.........................................................................................	22	1	18.00	0.00	0.00	2.00	16.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTA.........................................................................................	22	1	18.00	0.00	0.00	5.00	13.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTTA.........................................................................................	22	1	17.00	0.00	0.00	1.00	16.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTT........................................................................................	23	1	16.00	3.00	0.00	4.00	9.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	2.00	0.00	7.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGT............................................................................................	19	1	15.00	9.00	0.00	2.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTG..........................................................................................	21	1	15.00	0.00	0.00	2.00	13.00	0.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTTA.........................................................................................	22	1	13.00	0.00	0.00	0.00	13.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	13.00	9.00	0.00	0.00	4.00	0.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTT..........................................................................................	21	1	13.00	0.00	0.00	1.00	12.00	0.00
..........................................................................................TAACTGCCTTGGGAAGGGCTT..........................................................................................	21	1	12.00	0.00	0.00	1.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTTA.........................................................................................	22	1	12.00	0.00	0.00	1.00	11.00	0.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	12.00	2.00	0.00	1.00	9.00	0.00
..........................................................................................TCGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	12.00	2.00	0.00	1.00	9.00	0.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	12.00	1.00	0.00	2.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGTT...........................................................................................	20	1	12.00	9.00	0.00	0.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTTA.........................................................................................	22	1	11.00	0.00	0.00	1.00	10.00	0.00
...........................................AGTCTCTCACATGGCTGGTCTAGC......................................................................................................................................	24	1	11.00	0.00	9.00	0.00	2.00	0.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	11.00	1.00	0.00	5.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTTA.........................................................................................	22	1	11.00	0.00	1.00	0.00	10.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTA..........................................................................................	21	1	11.00	1.00	0.00	1.00	9.00	0.00
..........................................................................................TAGGTGCCTTGTGAAGGGCTT..........................................................................................	21	1	11.00	1.00	0.00	0.00	10.00	0.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	10.00	1.00	0.00	2.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAC........................................................................................	23	1	10.00	1.00	1.00	2.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	10.00	0.00	0.00	2.00	8.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTG.........................................................................................	22	1	10.00	1.00	0.00	1.00	8.00	0.00
..........................................................................................TAGCAGCCTGGTGAAGGGCTT..........................................................................................	21	1	9.00	0.00	0.00	1.00	8.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTTA.........................................................................................	21	1	9.00	0.00	0.00	4.00	5.00	0.00
..........................................................................................TAGCTGCGTGGTGAAGGGCTT..........................................................................................	21	1	9.00	0.00	0.00	1.00	8.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTTA.........................................................................................	22	1	9.00	0.00	0.00	1.00	8.00	0.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	9.00	1.00	0.00	1.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATTA.........................................................................................	22	1	9.00	0.00	0.00	5.00	4.00	0.00
..........................................................................................TAGCTGCCTGGTGAACGGCTT..........................................................................................	21	1	8.00	0.00	0.00	0.00	8.00	0.00
..........................................................................................TAGCGGCCTTGTGAGGGGCTT..........................................................................................	21	1	8.00	0.00	0.00	1.00	7.00	0.00
..........................................................................................TAGCTGCCTTGCGACGGGCTT..........................................................................................	21	1	8.00	0.00	0.00	0.00	8.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTTA.........................................................................................	22	1	8.00	0.00	0.00	1.00	7.00	0.00
...........................................AGTCTCTCACATGGCTGGTCTAG.......................................................................................................................................	23	1	8.00	0.00	3.00	1.00	4.00	0.00
..........................................................................................TAGCGGACTTGTGAAGGGCTT..........................................................................................	21	1	8.00	0.00	0.00	0.00	8.00	0.00
..........................................................................................TAGCTGGCTTGTGAAGGGCTT..........................................................................................	21	1	8.00	0.00	0.00	1.00	7.00	0.00

droWil1

---------------------------------ATTGTGTGTGAGTCTTTCACTGGGCGTGCTTAGCTAGAAATTTATTTACCATATTGCTAGCTGCCTTGTGAAGTGCTTACGTGTAATTGTTGAACAACAA-AAAA-AAATC--A---------------------------G-------------AAAAAGC---ATA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	7199.00	713.00	5543.00	937.00	6.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	4905.00	1433.00	1996.00	1460.00	16.00
...........................................AGTCTTTCACTGGGCGTGCTTAGC......................................................................................................................................	24	1	874.00	3.00	775.00	96.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	221.00	65.00	49.00	107.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTT.........................................................................................	22	1	153.00	45.00	62.00	45.00	1.00
...........................................AGTCTTTCACTGGGCGTGCTTAGCT.....................................................................................................................................	25	1	127.00	2.00	109.00	16.00	0.00
.............................................TCTTTCACTGGGCGTGCTTAGCT.....................................................................................................................................	23	1	118.00	1.00	85.00	30.00	2.00
.........................................................................................CTAGCTGCCTTGTGAAGTGCTT..........................................................................................	22	1	113.00	20.00	72.00	21.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTAA........................................................................................	23	1	85.00	20.00	54.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCT...........................................................................................	20	1	70.00	27.00	13.00	27.00	3.00
.........................................................................................CTAGCTGCCTTGTGAAGTGCTTA.........................................................................................	23	1	65.00	1.00	62.00	2.00	0.00
...........................................AGTCTTTCACTGGGCGTGCTTAG.......................................................................................................................................	23	1	65.00	1.00	59.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGC............................................................................................	19	1	30.00	0.00	16.00	14.00	0.00
..........................................................................................TACCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	23.00	10.00	8.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	22.00	2.00	6.00	14.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGTGCTTA.........................................................................................	22	1	20.00	4.00	14.00	2.00	0.00
..........................................................................................TATCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	20.00	2.00	15.00	3.00	0.00
..........................................................................................TATCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	20.00	1.00	17.00	2.00	0.00
.............................................TCTTTCACTGGGCGTGCTTAG.......................................................................................................................................	21	1	19.00	4.00	3.00	7.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTTA.........................................................................................	22	1	18.00	4.00	11.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTAT........................................................................................	23	1	17.00	8.00	4.00	5.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGTGCT...........................................................................................	21	1	15.00	2.00	10.00	3.00	0.00
..........................................................................................TAGATGCCTTGTGAAGTGCTTA.........................................................................................	22	1	15.00	0.00	10.00	5.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGATTA.........................................................................................	22	1	14.00	0.00	12.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTCCTTA.........................................................................................	22	1	14.00	1.00	13.00	0.00	0.00
.............................................TCTTTCACTGGGCGTGCTT.........................................................................................................................................	19	1	13.00	2.00	1.00	10.00	0.00
..........................................................................................TACCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	13.00	3.00	10.00	0.00	0.00
...........................................AGTCTTTCACTGGGCGTGCTT.........................................................................................................................................	21	1	13.00	4.00	4.00	5.00	0.00
..........................................................................................TAGATGCCTTGTGAAGTGCTT..........................................................................................	21	1	12.00	1.00	5.00	6.00	0.00
..........................................................................................TAGCTGCATTGTGAAGTGCTT..........................................................................................	21	1	12.00	1.00	3.00	8.00	0.00
...................................................................TAGAAATTTATTTACCATATTGC...............................................................................................................	23	1	12.00	0.00	12.00	0.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGTGCTTA.........................................................................................	22	1	12.00	0.00	11.00	1.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGTGC............................................................................................	20	1	12.00	0.00	7.00	5.00	0.00
..........................................................................................TAGCTGCCTxxTGAAGTGCTTA.........................................................................................	20	1	12.00	1.00	11.00	0.00	0.00
..........................................................................................TAACTGCCTTGTGAAGTGCTT..........................................................................................	21	1	12.00	1.00	5.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTTCTT..........................................................................................	21	1	12.00	1.00	8.00	3.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGTGCTTA.........................................................................................	22	1	11.00	2.00	5.00	4.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGTGCTT..........................................................................................	21	1	11.00	1.00	7.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGTGCTTA.........................................................................................	22	1	11.00	0.00	7.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTAAA.......................................................................................	24	1	11.00	1.00	8.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTTCTTA.........................................................................................	22	1	11.00	0.00	10.00	1.00	0.00
.............................................................................................................GTACGTGAAATTGTTGAA..........................................................................	18	1	11.00	0.00	11.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTTT........................................................................................	23	1	11.00	6.00	2.00	3.00	0.00
..........................................................................................TAACTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	10.00	0.00	8.00	2.00	0.00
...........................................AGTCTTTCACTGGGCGTGCTTA........................................................................................................................................	22	1	10.00	1.00	9.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTTCC.......................................................................................	24	1	10.00	1.00	0.00	9.00	0.00
..........................................................................................TAGCTGCCTTTTGAAGTGCTTA.........................................................................................	22	1	9.00	0.00	8.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	9.00	1.00	3.00	5.00	0.00
..........................................................................................TAGCTGCCTCGTGAAGTGCTT..........................................................................................	21	1	9.00	4.00	3.00	1.00	1.00
..........................................................................................TAGCTGCCTTGCGAAGTGCTT..........................................................................................	21	1	9.00	2.00	4.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTAG........................................................................................	23	1	9.00	4.00	2.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGTGCTT..........................................................................................	21	1	8.00	2.00	3.00	3.00	0.00
...........................................AGTCTTTCACTGGGCGTGCTTAGA......................................................................................................................................	24	1	8.00	0.00	6.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGTGCTTA.........................................................................................	22	1	8.00	0.00	7.00	1.00	0.00
..........................................................................................TAGCTACCTTGTGAAGTGCTTA.........................................................................................	22	1	8.00	2.00	5.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAATTGCTTA.........................................................................................	22	1	7.00	0.00	6.00	1.00	0.00
..........................................................................................TAGCTGCATTGTGAAGTGCTTA.........................................................................................	22	1	7.00	0.00	4.00	3.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGTGCTTT.........................................................................................	23	1	7.00	1.00	6.00	0.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGTGCTTA.........................................................................................	22	1	7.00	0.00	7.00	0.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	7.00	1.00	5.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGTGCTTA.........................................................................................	22	1	7.00	0.00	5.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCCTA.........................................................................................	22	1	6.00	0.00	5.00	1.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGTGCTTA.........................................................................................	22	1	6.00	1.00	5.00	0.00	0.00
.............................................TCTTTCACTGGGCGTGCTTAGCTA....................................................................................................................................	24	1	6.00	0.00	6.00	0.00	0.00
........................................................................................GCTAGCTGCCTTGTGAAGTGCT...........................................................................................	22	1	6.00	0.00	4.00	2.00	0.00
...........................................................................................AGCTGCCTTGTGAAGTGCTTA.........................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGTTTA.........................................................................................	22	1	6.00	0.00	4.00	2.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGTGCTT..........................................................................................	21	1	6.00	1.00	2.00	3.00	0.00
..........................................................................................TAGCTGCCTCGTGAAGTGCTTA.........................................................................................	22	1	6.00	0.00	4.00	2.00	0.00
..........................................................................................TAGCTxCCTTGTGAAGTGCTTA.........................................................................................	21	1	6.00	1.00	4.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGACGTGCTT..........................................................................................	21	1	6.00	2.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAATTGCTT..........................................................................................	21	1	6.00	1.00	2.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGATT..........................................................................................	21	1	6.00	1.00	1.00	4.00	0.00
.............................................TCTTTCACTGGGCGTGCTTAGC......................................................................................................................................	22	1	6.00	0.00	5.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTACTT..........................................................................................	21	1	6.00	1.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCCT..........................................................................................	21	1	5.00	1.00	1.00	3.00	0.00
..........................................................................................TAGCTGCCTTATGAAGTGCTTA.........................................................................................	22	1	5.00	1.00	2.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAATGCTT..........................................................................................	21	1	5.00	1.00	0.00	4.00	0.00
..........................................................................................TAGCTGCTTTGTGAAGTGCTTA.........................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
...........................................AGTCTTTCACTGGGCGTTCTTAGC......................................................................................................................................	24	1	5.00	0.00	4.00	1.00	0.00
..........................................................................................TAGCTxCCTTGTGAAGTGCTT..........................................................................................	20	1	5.00	1.00	4.00	0.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGTGCTT..........................................................................................	21	1	5.00	0.00	2.00	3.00	0.00
...........................................AGTCTTTCACTGGGAGTGCTTAGC......................................................................................................................................	24	1	5.00	0.00	3.00	2.00	0.00
..........................................................................................TAGCTGCCTTTTGAAGTGCTT..........................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTG.........................................................................................	22	1	5.00	2.00	2.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTTA.........................................................................................	22	1	5.00	1.00	4.00	0.00	0.00
............................................................................................GCTGCCTTGTGAAGTGCTTA.........................................................................................	20	1	5.00	2.00	2.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGTGCTT..........................................................................................	21	1	5.00	2.00	1.00	2.00	0.00
..........................................................................................TAGCTGACTTGTGAAGTGCTTA.........................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTAAAGTGCTT..........................................................................................	21	1	5.00	2.00	3.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTCCTT..........................................................................................	21	1	4.00	0.00	2.00	2.00	0.00
..............................................................................................................TACGTGTAATTGTTGAACAACAA-A..................................................................	24	1	4.00	0.00	2.00	2.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	4.00	2.00	1.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTA..........................................................................................	21	1	4.00	1.00	2.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTG.............................................................................................	18	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGACGTGCTTA.........................................................................................	22	1	4.00	1.00	3.00	0.00	0.00
........................................................................................GCTAGCTGCCTTGTGAAGTGCTT..........................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGTTT..........................................................................................	21	1	4.00	0.00	3.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTCA.........................................................................................	22	1	4.00	1.00	3.00	0.00	0.00
..........................................................................................TAGCTGCCTxxTGAAGTGCTT..........................................................................................	19	1	4.00	1.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAACTGCTT..........................................................................................	21	1	4.00	1.00	1.00	2.00	0.00

droVir3

GGGCTATAAAATTTGGACCAAATGTGAGAGCGCATTGCATGTGAGTCCCTCATTTGGCAGGTTTAGCTG-CTTTT-A-ATACGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTTAAACAACTT-A--------------------------------------------------------AACA---ACA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	7378.00	3433.00	3453.00	450.00	14.00	28.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	473.00	173.00	277.00	15.00	2.00	6.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	55.00	2.00	52.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	44.00	42.00	1.00	0.00	1.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	31.00	1.00	30.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	29.00	8.00	18.00	3.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	24.00	5.00	14.00	5.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	23.00	10.00	13.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	22.00	5.00	15.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	22.00	3.00	17.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	21.00	10.00	11.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	20.00	0.00	13.00	7.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	19.00	2.00	16.00	1.00	0.00	0.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	18.00	5.00	13.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	16.00	2.00	13.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTT..........................................................................................	21	1	16.00	0.00	16.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	16.00	7.00	4.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	14.00	1.00	13.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTG.........................................................................................	22	1	13.00	7.00	4.00	1.00	0.00	1.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	13.00	1.00	8.00	4.00	0.00	0.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	13.00	9.00	3.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	12.00	2.00	10.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	12.00	7.00	5.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	12.00	3.00	8.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	11.00	4.00	5.00	2.00	0.00	0.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	10.00	2.00	7.00	1.00	0.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	10.00	2.00	8.00	0.00	0.00	0.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	10.00	1.00	8.00	1.00	0.00	0.00
...........................................AGTCCCTCATTTGGCAGGTTTAGC......................................................................................................................................	24	1	9.00	2.00	4.00	1.00	2.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	9.00	2.00	5.00	0.00	0.00	2.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	9.00	6.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	9.00	1.00	6.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	8.00	2.00	6.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	8.00	7.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	8.00	2.00	6.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	8.00	5.00	1.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	8.00	4.00	3.00	1.00	0.00	0.00
..........................................................................................TAGCTGGCTTGTGAAGGGCTT..........................................................................................	21	1	8.00	1.00	5.00	2.00	0.00	0.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	7.00	1.00	6.00	0.00	0.00	0.00
..........................................................................................TAGCTGACTTGTGATGGGCTT..........................................................................................	21	1	7.00	0.00	7.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	7.00	0.00	4.00	0.00	2.00	1.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	7.00	1.00	6.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	7.00	2.00	5.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTT..........................................................................................	19	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	6.00	2.00	1.00	0.00	1.00	2.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	6.00	2.00	3.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	6.00	4.00	2.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTACC.......................................................................................	24	1	6.00	5.00	0.00	0.00	1.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	1.00	5.00	0.00	0.00	0.00
...........................................AGTCCCTCATTTGGCAGGTTTAG.......................................................................................................................................	23	1	6.00	0.00	5.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGGCTTA.........................................................................................	22	1	5.00	0.00	4.00	1.00	0.00	0.00
..........................................................................................TAGCTGACTGGTGAAGGGCTT..........................................................................................	21	1	5.00	0.00	5.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	5.00	0.00	3.00	2.00	0.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	1.00	2.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	5.00	4.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	3.00	2.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	5.00	0.00	5.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGATGGTCTT..........................................................................................	21	1	4.00	0.00	4.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	4.00	1.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTTA.........................................................................................	22	1	4.00	2.00	2.00	0.00	0.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	4.00	2.00	2.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTTA.........................................................................................	22	1	4.00	1.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	4.00	3.00	1.00	0.00	0.00	0.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTA..........................................................................................	21	1	4.00	1.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTTA.........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGCGCTT..........................................................................................	21	1	4.00	0.00	3.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCC...........................................................................................	20	1	3.00	0.00	0.00	0.00	1.00	2.00
..........................................................................................TAGATGCCTTGTGAAGGGCTTA.........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	1.00	2.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCGTGGGAAGGGCTT..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	3.00	2.00	1.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTGGTGAACGGCTT..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	3.00	2.00	0.00	1.00	0.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................................................................................TAGGTGACTTGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	1.00	1.00	1.00	0.00	0.00
..........................................................................................TAGCAGCCTGGTGAAGGGCTT..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGTGCTT..........................................................................................	21	1	3.00	0.00	2.00	1.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCAT..........................................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGCCGGGCTT..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00

droMoj3

TTATTT----------------ATATGAACCGCATTGCATGTGAGTCCCTCATTTGGTGCGCTTAGCTG-TTTTTCA-ATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGTTTGTAATACAAC----------------------------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	20596.00	8158.00	6909.00	4680.00	849.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	2066.00	341.00	967.00	627.00	131.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	405.00	30.00	214.00	156.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTC.........................................................................................	22	1	184.00	87.00	50.00	46.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	154.00	79.00	48.00	27.00	0.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTT..........................................................................................	21	1	137.00	12.00	66.00	54.00	5.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	135.00	37.00	25.00	18.00	55.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	134.00	0.00	37.00	92.00	5.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	114.00	0.00	31.00	80.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	92.00	32.00	27.00	30.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	75.00	27.00	23.00	21.00	4.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	70.00	9.00	29.00	32.00	0.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	68.00	27.00	25.00	14.00	2.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	56.00	5.00	24.00	23.00	4.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	54.00	0.00	16.00	38.00	0.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	43.00	36.00	2.00	4.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTG.........................................................................................	22	1	42.00	11.00	15.00	15.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	39.00	6.00	17.00	16.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	36.00	8.00	14.00	14.00	0.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	36.00	4.00	19.00	11.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGGC............................................................................................	19	1	35.00	3.00	20.00	12.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGG.............................................................................................	18	1	35.00	3.00	21.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAATGGCTT..........................................................................................	21	1	34.00	11.00	7.00	16.00	0.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	31.00	24.00	3.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	30.00	0.00	16.00	13.00	1.00
..........................................................................................TAGCTGCCTGGTGAAGGGCTT..........................................................................................	21	1	30.00	0.00	19.00	11.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	29.00	2.00	20.00	7.00	0.00
..........................................................................................TAGCCGCCTTGTGAAGGGCTT..........................................................................................	21	1	26.00	4.00	16.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	26.00	9.00	9.00	7.00	1.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	26.00	1.00	15.00	5.00	5.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	25.00	0.00	13.00	9.00	3.00
..........................................................................................TAGCTGCCTTGTGAACGGCTT..........................................................................................	21	1	25.00	2.00	10.00	13.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	24.00	5.00	14.00	3.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	23.00	8.00	9.00	4.00	2.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	23.00	2.00	11.00	9.00	1.00
..........................................................................................TAGCTGCCTTGTGAGGGGCTTA.........................................................................................	22	1	22.00	2.00	13.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTA..........................................................................................	21	1	21.00	5.00	11.00	5.00	0.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCT...........................................................................................	21	1	20.00	2.00	11.00	5.00	2.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	20.00	7.00	4.00	8.00	1.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	20.00	2.00	6.00	11.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	19.00	8.00	5.00	4.00	2.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	19.00	5.00	7.00	6.00	1.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	19.00	4.00	7.00	8.00	0.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	18.00	5.00	10.00	2.00	1.00
...........................................AGTCCCTCATTTGGTGCGCTTAGC......................................................................................................................................	24	1	17.00	0.00	1.00	0.00	16.00
..........................................................................................TAGCTGCATTGTGAAGGGCTT..........................................................................................	21	1	17.00	2.00	9.00	4.00	2.00
..........................................................................................TAGCTGCCTTGTGATGGGCTT..........................................................................................	21	1	17.00	1.00	8.00	7.00	1.00
..........................................................................................TAGCAGCCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	1.00	7.00	6.00	1.00
..........................................................................................TGGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	15.00	0.00	6.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTC........................................................................................	23	1	15.00	4.00	8.00	3.00	0.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	15.00	2.00	4.00	6.00	3.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	14.00	6.00	2.00	5.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGGTT..........................................................................................	21	1	14.00	1.00	5.00	6.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGAGCTT..........................................................................................	21	1	14.00	4.00	4.00	6.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCGT..........................................................................................	21	1	14.00	4.00	3.00	5.00	2.00
..........................................................................................TAGCTGCCTTGTAAAGGGCTT..........................................................................................	21	1	14.00	3.00	4.00	6.00	1.00
..........................................................................................TAGCTGCCTTGTTAAGTGCTT..........................................................................................	21	1	14.00	0.00	5.00	9.00	0.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	14.00	0.00	10.00	4.00	0.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTA.........................................................................................	22	1	13.00	0.00	4.00	9.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTTA.........................................................................................	22	1	13.00	0.00	6.00	6.00	1.00
..........................................................................................TAGCTGCGTTGTGAAGGGCTT..........................................................................................	21	1	13.00	0.00	10.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	12.00	2.00	7.00	3.00	0.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	12.00	4.00	6.00	2.00	0.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	12.00	1.00	6.00	5.00	0.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	12.00	6.00	3.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	12.00	3.00	6.00	2.00	1.00
..........................................................................................TAGCTGCCTTGTGCCGGGCTT..........................................................................................	21	1	11.00	0.00	0.00	11.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTG..........................................................................................	21	1	11.00	4.00	3.00	4.00	0.00
..........................................................................................GAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	11.00	1.00	3.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTATC.......................................................................................	24	1	10.00	1.00	5.00	4.00	0.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	9.00	2.00	5.00	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTTA.........................................................................................	22	1	9.00	1.00	5.00	3.00	0.00
..........................................................................................AAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	9.00	0.00	2.00	7.00	0.00
..........................................................................................TAGCTGCCTTGTGCAGCGCTT..........................................................................................	21	1	8.00	0.00	4.00	4.00	0.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTTA.........................................................................................	22	1	8.00	0.00	2.00	6.00	0.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	8.00	1.00	7.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAC........................................................................................	23	1	7.00	1.00	3.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTGACGTGCTT..........................................................................................	21	1	7.00	0.00	3.00	2.00	2.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	7.00	1.00	3.00	3.00	0.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTTA.........................................................................................	22	1	7.00	1.00	2.00	4.00	0.00
............................................................................................GCTGCCTTGTGAAGGGCTT..........................................................................................	19	1	6.00	0.00	4.00	2.00	0.00
..........................................................................................TCGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	1.00	2.00	3.00	0.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	6.00	2.00	3.00	1.00	0.00
..........................................................................................TAGCTxCCTTGTGAAGGGCTT..........................................................................................	20	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................TAGCTGGCTTGTGAAGGGCTT..........................................................................................	21	1	6.00	2.00	3.00	1.00	0.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTT..........................................................................................	19	1	6.00	4.00	1.00	1.00	0.00
..........................................................................................TAGCGGCCTTGGGAAGGGCTT..........................................................................................	21	1	5.00	0.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTT..........................................................................................	21	1	5.00	1.00	3.00	1.00	0.00
............................................GTCCCTCATTTGGTGCGCTTAGCT.....................................................................................................................................	24	1	5.00	0.00	1.00	0.00	4.00
..........................................................................................TAGCTGCCTTGTGAATGGCTTA.........................................................................................	22	1	5.00	0.00	1.00	3.00	1.00
..........................................................................................TATCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	5.00	0.00	1.00	4.00	0.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTTA.........................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
..........................................................................................TAACTGCCTTGGGAAGGGCTT..........................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	5.00	1.00	4.00	0.00	0.00
..........................................................................................TAGCTACCTTGTGAAGGGCTTA.........................................................................................	22	1	4.00	1.00	2.00	1.00	0.00
..........................................................................................TAGCTGCCTTGGGAGGGGCTT..........................................................................................	21	1	4.00	0.00	3.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTTAACGGCTT..........................................................................................	21	1	4.00	0.00	2.00	2.00	0.00
..........................................................................................TAGCTGCCTGGTGAAGGGGTT..........................................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	4.00	2.00	1.00	1.00	0.00
..........................................................................................TAGCTGCCTTGTGAAGGGA............................................................................................	19	1	4.00	2.00	2.00	0.00	0.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTTA.........................................................................................	22	1	4.00	0.00	3.00	1.00	0.00

droGri2

GATTAT--------G-----A------GAGCGCATTACATGTGAGTCCCTCATTTGGCGGACTTAGCTG-CTTTTCA-ATTTGATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTGATTGTAAATCAACTG-A------------------------------------------------------GGAAAA---ATA	Size	Hit Count	Total Norm	V109 Male body
..........................................................................................TAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	1756.00	1756.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	113.00	113.00
....................................................................................................GAGAAGGGCTTxCGTGTGA..................................................................................	18	1	34.00	34.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTT..........................................................................................	21	1	21.00	21.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTT..........................................................................................	21	1	18.00	18.00
..........................................................................................TAGCTGCCTTGTGAAGGACTT..........................................................................................	21	1	11.00	11.00
..........................................................................................TATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	8.00	8.00
..........................................................................................TACCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	7.00	7.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTT.........................................................................................	22	1	7.00	7.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGCGCTT..........................................................................................	21	1	5.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAA........................................................................................	23	1	5.00	5.00
..........................................................................................TAACTGCCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	5.00
..........................................................................................TAGCTGCCTTGTGAAGGGTTT..........................................................................................	21	1	5.00	5.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	5.00
..........................................................................................CAGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	5.00	5.00
..........................................................................................TAGCTGCCCTGTGAAGGGCTT..........................................................................................	21	1	4.00	4.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAG........................................................................................	23	1	4.00	4.00
..........................................................................................TAGCTGCCTCGTGAAGGGCTT..........................................................................................	21	1	4.00	4.00
..........................................................................................TAGCTGCCTTGTGAAGGGATT..........................................................................................	21	1	4.00	4.00
..........................................................................................TAGCTGCCGTGTGAAGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTGCCTTGTGACGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTAT........................................................................................	23	1	3.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGCCT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTTTT........................................................................................	23	1	3.00	3.00
..........................................................................................TAGCTGGCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTGCCTTTTGAAGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTACCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGATGCCTTGTGAAGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTGCCTTGTTAAGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTGCCTTGCGAAGGGCTT..........................................................................................	21	1	3.00	3.00
..........................................................................................TAGCTGACTTGTGAAGGGCTT..........................................................................................	21	1	2.00	2.00
.........................................................................................CTAGCTGCCTTGTGAAGGGCTT..........................................................................................	22	1	2.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGGCT...........................................................................................	20	1	2.00	2.00
..........................................................................................TAGCTGCCTTGTGAAGGACTTA.........................................................................................	22	1	2.00	2.00
..........................................................................................TAGCTGCCTTGTCAAGGGCTT..........................................................................................	21	1	2.00	2.00
..........................................................................................TAGCTTCCTTGTGAAGGGCTT..........................................................................................	21	1	2.00	2.00
..........................................................................................TAGCTGCCTTGTGGAGGGCTT..........................................................................................	21	1	2.00	2.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTT..........................................................................................	19	1	2.00	2.00
...........................................................................................TGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGTAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCGGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGTCTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTC..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCTTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGAGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTACCTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00
..........................................................................................TAGCTGCCTTxTGAAGGGCTT..........................................................................................	20	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGACGGGCTTA.........................................................................................	22	1	1.00	1.00
..........................................................................................TAGCAGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCATGCGAAGGGCTT..........................................................................................	21	1	1.00	1.00
....................................................................................................GAGAAGGGxTTACGTGTGA..................................................................................	18	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTA..........................................................................................	21	1	1.00	1.00
..........................................................................................AATCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAAGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTCTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGTCTTA.........................................................................................	22	1	1.00	1.00
..........................................................................................TAGCTGCCxTGTGAAGGGCTT..........................................................................................	20	1	1.00	1.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00
..........................................................................................TAGCTCCCTTGTGAAGGGCTG..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTG..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGAAAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGTGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGTTGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCATGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TCGCTGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGGTGCCTTGTGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCxCCCTTGTGAAGGGCTT..........................................................................................	20	1	1.00	1.00
..........................................................................................TAGCTGCCTxxTGAAGGGCTTA.........................................................................................	20	1	1.00	1.00
...........................................................................................AGCTGCCTTGTGAAGGGCTT..........................................................................................	20	1	1.00	1.00
..........................................................................................TAACTGCCTTGTGAAGGGCTTA.........................................................................................	22	1	1.00	1.00
..........................................................................................TAACTGCCTTGTGAGGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGGCTCAT........................................................................................	23	1	1.00	1.00
..........................................................................................TAGCTGCCTTGGGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTATGAAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGACCT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGCAGGGCTT..........................................................................................	21	1	1.00	1.00
..........................................................................................TAGCTGCCTTGTGAAGGCCTTA.........................................................................................	22	1	1.00	1.00
..........................................................................................TAGCCGCCTTGTGAAGGGCGT..........................................................................................	21	1	1.00	1.00

Generated: 04/20/2012 at 05:23:13 EDT

dme-mir-980

chrX:174205-174302 -

Known_mirbase

antisense_to_intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup