dme-mir-958- Best orthologs

dme-mir-958	chr3L:22662389-22662480 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 22662402-22662423
   star strand at position 22662443-22662465
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:22662374-22662495 -		1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTATGGCAAGTAGAATAGCAGGCTTATCACATGTTTAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---CCCG---------A
droSim1	chr3L:21947666-21947787 -	LASTZ	1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---CCCG---------A
droSec1	super_11:2578674-2578788 -	LASTZ	1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA-------------------
droYak2	chr3L:23128644-23128763 -	LASTZ	1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCGAA---CCC-----------
droEre2	scaffold_4784:22312266-22312387 -	LASTZ	1	GGA-T-TGTC------------------------TACGATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAA---CCCG---------A
droEug1	scf7180000409801:238269-238390 -	LASTZ	4	GGA-T-TTTC------------------------CGCGATCGGCGGGTCTTTAGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGCAAACATCACC---TCAG---------A
droBia1	scf7180000302377:590001-590115 +	LASTZ	4	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCG-ATCCGCTGTGAGATTCTTCTATTCTACTTTCTACGA-CACCCGTAAACATCA-------------------
droTak1	scf7180000415263:76348-76466 -	LASTZ	4	GGA-T-TTTC------------------------CACGATCGGCGGGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCAGC----C-----------A
droEle1	scf7180000491199:65271-65387 +	LASTZ	4	GTA-T-TTTC------------------------CTCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-GACCCGTGTACATCACA-----------------
droRho1	scf7180000773586:33589-33710 +	LASTZ	4	GGA-C-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCA-ACCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---TAAG---------A
droFic1	scf7180000453830:377334-377447 +	LASTZ	4	GGA-C-TTTC-------------------------TCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCTGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTAAACATCA-------------------
droKik1	scf7180000299918:44958-45080 -	LASTZ	4	GGA-TATTTC------------------------CGCGAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGCTAACATCACC----CAG---------G
droAna3	scaffold_13337:22380395-22380515 -	LASTZ	1	GAA-TATTCC------------------------AACGACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGAT---CTC-----------
droBip1	scf7180000396426:441185-441310 +	LASTZ	4	GGA-TATTTC------------------------AACGACCGGAGTGCTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTTC-TTTA-GCCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGCTAACACCGTTCTACTGG---------G
dp4	chrXR_group8:344159-344293 -	LASTZ	1	GGA-TATGGC-------------------T--AGCACGATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATCTAA---TAGAGC-AGCCCTC
droPer1	super_96:132292-132395 +	LASTZ	1	G-------------------------------------ATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATC--------------------
droWil1	scaffold_180698:7060886-7061014 +	LASTZ	1	TGAGT-TTTG------A-------CTATGACT--ATCTAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA-----------------
droVir3	scaffold_13049:17089392-17089522 +	LASTZ	1	TGT-T-TTTT-----TAATGTTCTCTATAT--ATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC--------------------
droMoj3	scaffold_6680:22084806-22084935 +	LASTZ	1	GTG-T-TTTC------C-------CTGTGATT--CTCAGTCGGTGTGGA-TTGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTCGTT---TTCG----------
droGri2	scaffold_15110:15103971-15104124 -	LASTZ	1	GTG-TGTGCAGGTTTTATGGTTTTTGTTTT--ACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACA---TTCAGTTAAGTTTA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GGA-T-TTTC------------------------CACGATCGGCGTGTCTATGGCAAGTAGAATAGCAGGCTTATCACATGTTTAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---CCCG---------A
droSim1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---CCCG---------A
droSec1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA-------------------
droYak2	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCGAA---CCC-----------
droEre2	GGA-T-TGTC------------------------TACGATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAA---CCCG---------A
droEug1	GGA-T-TTTC------------------------CGCGATCGGCGGGTCTTTAGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGCAAACATCACC---TCAG---------A
droBia1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCG-ATCCGCTGTGAGATTCTTCTATTCTACTTTCTACGA-CACCCGTAAACATCA-------------------
droTak1	GGA-T-TTTC------------------------CACGATCGGCGGGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCAGC----C-----------A
droEle1	GTA-T-TTTC------------------------CTCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-GACCCGTGTACATCACA-----------------
droRho1	GGA-C-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCA-ACCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---TAAG---------A
droFic1	GGA-C-TTTC-------------------------TCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCTGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTAAACATCA-------------------
droKik1	GGA-TATTTC------------------------CGCGAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGCTAACATCACC----CAG---------G
droAna3	GAA-TATTCC------------------------AACGACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGAT---CTC-----------
droBip1	GGA-TATTTC------------------------AACGACCGGAGTGCTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTTC-TTTA-GCCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGCTAACACCGTTCTACTGG---------G
dp4	GGA-TATGGC-------------------T--AGCACGATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATCTAA---TAGAGC-AGCCCTC
droPer1	G-------------------------------------ATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATC--------------------
droWil1	TGAGT-TTTG------A-------CTATGACT--ATCTAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA-----------------
droVir3	TGT-T-TTTT-----TAATGTTCTCTATAT--ATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC--------------------
droMoj3	GTG-T-TTTC------C-------CTGTGATT--CTCAGTCGGTGTGGA-TTGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTCGTT---TTCG----------
droGri2	GTG-TGTGCAGGTTTTATGGTTTTTGTTTT--ACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACA---TTCAGTTAAGTTTA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---CCCG---------A	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	8330.00	2335.00	59.00	584.00	5352.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	1754.00	564.00	30.00	496.00	664.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	600.00	510.00	5.00	18.00	67.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	197.00	172.00	0.00	2.00	23.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	185.00	1.00	0.00	26.00	158.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	124.00	31.00	1.00	2.00	90.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	118.00	39.00	5.00	52.00	22.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	73.00	70.00	0.00	1.00	2.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	37.00	9.00	1.00	19.00	8.00
...............................................................................TGTTCAATTCA-ATCTGCTG...............................................................	19	1	32.00	17.00	0.00	3.00	12.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	32.00	7.00	2.00	17.00	6.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	28.00	24.00	0.00	0.00	4.00
.........................................................GTAGAATAGCAGGCTTATCACA...................................................................................	22	1	26.00	2.00	0.00	2.00	22.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	25.00	1.00	0.00	0.00	24.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	19.00	7.00	0.00	0.00	12.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	14.00	8.00	3.00	2.00	1.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	14.00	12.00	0.00	0.00	2.00
........................................................AGTAGAATAGCGGGCTTATCACA...................................................................................	23	1	13.00	6.00	0.00	0.00	7.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	13.00	9.00	0.00	0.00	4.00
..........................................................TAGAATAGCAGGCTTATCACATG.................................................................................	23	1	13.00	9.00	1.00	0.00	3.00
........................................................AGTAGAATACCAGGCTTATCACA...................................................................................	23	1	11.00	2.00	0.00	0.00	9.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	1	11.00	11.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCATA...................................................................................	23	1	10.00	9.00	0.00	0.00	1.00
.......................................................AAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	10.00	1.00	0.00	0.00	9.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	1	9.00	9.00	0.00	0.00	0.00
.......................................................................................................ATTCTTCTATTCTACTTT.........................................	18	1	9.00	0.00	0.00	4.00	5.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	1	9.00	1.00	0.00	0.00	8.00
........................................................AGTAGAATAGCAGGCTCATCACA...................................................................................	23	1	8.00	6.00	0.00	0.00	2.00
...................................................................................................TGAGATTCTTCTATTCTACTTC.........................................	22	1	8.00	0.00	1.00	2.00	5.00
........................................................AGTAGAGTAGCAGGCTTATCACA...................................................................................	23	1	8.00	3.00	0.00	0.00	5.00
.....................................................................................................AGATTCTTCTATTCTACTTT.........................................	20	1	8.00	0.00	0.00	0.00	8.00
...................................................................................................TGAGTTTCTTCTATTCTACTTT.........................................	22	1	8.00	6.00	0.00	0.00	2.00
........................................................AGTAGAATAGCAGGCTTATTACA...................................................................................	23	1	7.00	2.00	0.00	0.00	5.00
........................................................AATAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	7.00	0.00	0.00	0.00
........................................................GGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	0.00	0.00	1.00	6.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	6.00	0.00	0.00	1.00
........................................................AGTAGAATxxCAGGCTTATCACA...................................................................................	21	1	6.00	0.00	0.00	3.00	3.00
........................................................AGTAGAATAGCAGGCTTGTCACA...................................................................................	23	1	6.00	4.00	0.00	0.00	2.00
........................................................AGTAGAATAGCAGGCTTAACACA...................................................................................	23	1	6.00	2.00	0.00	0.00	4.00
........................................................AGTAGAATAGCATGCTTATCACA...................................................................................	23	1	6.00	3.00	0.00	0.00	3.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	1	6.00	5.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTACCACA...................................................................................	23	1	6.00	3.00	0.00	1.00	2.00
........................................................AGTAGAATAGCAGGCTTATCCC....................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
....................................................................................................GAGATTCTTCTATTCTACTTT.........................................	21	1	5.00	1.00	0.00	2.00	2.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCAC....................................................................................	23	1	5.00	4.00	0.00	1.00	0.00
...................................................................................................CGAGATTCTTCTATTCTACTTT.........................................	22	1	5.00	2.00	0.00	1.00	2.00
........................................................AGTAGGATAGCAGGCTTATCACA...................................................................................	23	1	5.00	3.00	0.00	0.00	2.00
...................................................................................................TGAGGTTCTTCTATTCTACTTT.........................................	22	1	5.00	2.00	0.00	0.00	3.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	5.00	2.00	1.00	0.00	2.00
......................................................................................................GATTCTTCTATTCTACTTT.........................................	19	1	5.00	0.00	0.00	2.00	3.00
........................................................AGTAGAATAGCAGGCCTATCACA...................................................................................	23	1	5.00	4.00	0.00	0.00	1.00
...................................................................................................TGATATTCTTCTATTCTACTTT.........................................	22	1	4.00	0.00	0.00	1.00	3.00
........................................................AGTAGAATAGTAGGCTTATCACA...................................................................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................AGTAGAATAGCCGGCTTATCAC....................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................AGTGGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	2.00	0.00	1.00	1.00
...................................................................................................TGAGATTCTTCTCTTCTACTTT.........................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	4.00	2.00	0.00	0.00	2.00
...................................................................................................TGAGAGTCTTCTATTCTACTTT.........................................	22	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	4.00	0.00	0.00	2.00	2.00
...................................................................................................TGAGCTTCTTCTATTCTACTTT.........................................	22	1	4.00	2.00	0.00	0.00	2.00
.......................................................CAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	4.00	3.00	0.00	0.00	1.00
........................................................ATTAGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................AGTAGAATGGCAGGCTTATCACA...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGACTTATCACA...................................................................................	23	1	3.00	1.00	0.00	0.00	2.00
...........................................................................................ATCTGCTGTGAGATTCTTCTATT................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCTGATCACA...................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTATCCCC...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAxGCTTATCACA...................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCGTATCACA...................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
........................................................AGTAGCATAGCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
............................................................................................TCTGCTGTGAGATTCTTCTATTCTACTTT.........................................	29	1	3.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCTTATCAAA...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................CGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
........................................................AGAAGAATAGCAGGCTTGTCACA...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTTCTTT.........................................	22	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................TAAGATTCTTCTATTCTACTTT.........................................	22	1	3.00	2.00	0.00	0.00	1.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	3.00	0.00	0.00	2.00	1.00

droSec1

GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA-------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	6679.00	1772.00	4692.00	215.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	1916.00	362.00	1485.00	69.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	919.00	340.00	482.00	97.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	591.00	155.00	426.00	10.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	267.00	196.00	59.00	12.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	174.00	78.00	76.00	20.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	135.00	16.00	118.00	1.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	84.00	52.00	27.00	5.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	48.00	20.00	23.00	5.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	29.00	1.00	25.00	3.00
...............................................................................TGTTCAATTCA-ATCTGCTG...............................................................	19	1	27.00	0.00	27.00	0.00
........................................................AGTAGAATAGCAGGCTTACCACA...................................................................................	23	1	24.00	15.00	9.00	0.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	23.00	7.00	16.00	0.00
..........................................................TAGAATAGCAGGCTTATCACATG.................................................................................	23	1	20.00	3.00	17.00	0.00
..........................................................TAGAATAGCAGGCTTATCA.....................................................................................	19	1	18.00	2.00	14.00	2.00
........................................................AGTAGAATAGCAGGCTTAACACA...................................................................................	23	1	16.00	14.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	15.00	5.00	9.00	1.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	14.00	5.00	9.00	0.00
...................................................................................................TGAGATTCTTCTATTTTACTTT.........................................	22	1	12.00	0.00	12.00	0.00
........................................................AGTAGAATAGCGGGCTTATCACA...................................................................................	23	1	11.00	3.00	8.00	0.00
........................................................AGTAGAGTAGCAGGCTTATCACA...................................................................................	23	1	11.00	1.00	10.00	0.00
........................................................AGTAGAATAGCAGGTTTATCACA...................................................................................	23	1	11.00	1.00	10.00	0.00
........................................................AGTAGAATAGCAGGCCTATCACA...................................................................................	23	1	11.00	4.00	7.00	0.00
........................................................AGTAGAATACCAGGCTTATCACA...................................................................................	23	1	10.00	2.00	8.00	0.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	10.00	4.00	6.00	0.00
........................................................AGTAxAATAGCAGGCTTATCACA...................................................................................	22	1	10.00	0.00	9.00	1.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	10.00	2.00	8.00	0.00
...................................................................................................TGAGATTCTTCTATTCTATTTT.........................................	22	1	9.00	3.00	6.00	0.00
........................................................AGTTGAATAGCAGGCTTATCACA...................................................................................	23	1	9.00	0.00	9.00	0.00
...................................................................................................TGAGATTCTTCTATTCTA.............................................	18	1	8.00	0.00	8.00	0.00
........................................................AGTAGAATAGTAGGCTTATCACA...................................................................................	23	1	8.00	1.00	7.00	0.00
...................................................................................................TGAGATTCTTTTATTCTACTTT.........................................	22	1	8.00	0.00	8.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	8.00	2.00	6.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	8.00	7.00	1.00	0.00
........................................................GGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	8.00	1.00	7.00	0.00
........................................................AGTAGGATAGCAGGCTTATCACA...................................................................................	23	1	8.00	2.00	6.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAAA...................................................................................	23	1	8.00	1.00	7.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACAT..................................................................................	24	1	8.00	6.00	1.00	1.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	8.00	1.00	4.00	3.00
........................................................AGTAGAATAGCAGGCTTATTACA...................................................................................	23	1	7.00	1.00	6.00	0.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	7.00	4.00	3.00	0.00
........................................................ACTAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	1.00	5.00	1.00
........................................................AATAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	2.00	4.00	1.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	7.00	0.00	7.00	0.00
........................................................AGTAGAATAGCAGGCTTA........................................................................................	18	1	7.00	1.00	5.00	1.00
..........................................................TAGAATAGCAGGCTTATCACAT..................................................................................	22	1	7.00	4.00	3.00	0.00
.......................................................CAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	7.00	0.00	7.00	0.00
........................................................ATTAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	3.00	4.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	1	7.00	2.00	5.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTGGTC.....................................	26	1	6.00	0.00	6.00	0.00
........................................................AGTAGAATGGCAGGCTTATCACA...................................................................................	23	1	6.00	2.00	4.00	0.00
........................................................AGTAGAATAGCAGGCTCATCACA...................................................................................	23	1	6.00	0.00	6.00	0.00
...................................................................................................TGAGATTCTTCTATTCTAATTT.........................................	22	1	6.00	6.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTTCTTT.........................................	22	1	6.00	0.00	6.00	0.00
..........................................................TAGAATAGCAGGCTTATC......................................................................................	18	1	6.00	0.00	5.00	1.00
........................................................AGTATAATAGCAGGCTTATCACA...................................................................................	23	1	5.00	0.00	4.00	1.00
........................................................AGTAGAATAGCAAGCTTATCACA...................................................................................	23	1	5.00	3.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	5.00	1.00	4.00	0.00
........................................................AGTGGAATAGCAGGCTTATCACA...................................................................................	23	1	5.00	1.00	4.00	0.00
.........................................................GTAGAATAGCAGGCTTATCACA...................................................................................	22	1	5.00	0.00	5.00	0.00
...........................................................AGAATAGCAGGCTTATCACA...................................................................................	20	1	5.00	1.00	4.00	0.00
.................................................................................................TGTGAGATTCTTCTATTCTACT...........................................	22	1	5.00	1.00	4.00	0.00
........................................................CGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	5.00	0.00	5.00	0.00
...................................................................................................TGAGATTCCTCTATTCTACTTT.........................................	22	1	5.00	1.00	4.00	0.00
........................................................AGTAGAATAGCATGCTTATCACA...................................................................................	23	1	5.00	1.00	3.00	1.00
........................................................AGTAGAATAGCAGTCTTATCACA...................................................................................	23	1	5.00	1.00	4.00	0.00
........................................................AGTAGAATAGCAGCCTTATCACA...................................................................................	23	1	5.00	1.00	4.00	0.00
........................................................AGTAGAACAGCAGGCTTATCACA...................................................................................	23	1	5.00	1.00	3.00	1.00
........................................................AGTAGAATAGCAGGCTTATT......................................................................................	20	1	4.00	4.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCATA...................................................................................	23	1	4.00	0.00	4.00	0.00
...................................................................................................TGAGATTCTCCTATTCTACTTT.........................................	22	1	4.00	0.00	4.00	0.00
........................................................TGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	0.00	4.00	0.00
........................................................AGTAGAATAACAGGCTTATCACA...................................................................................	23	1	4.00	0.00	4.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCAC....................................................................................	23	1	4.00	0.00	4.00	0.00
..........................................................TAGAATAGCAGGCTTATCTCA...................................................................................	21	1	4.00	3.00	1.00	0.00
........................................................AGTAGAATAGCAGGCATATCACA...................................................................................	23	1	4.00	0.00	4.00	0.00
...................................................................................................TGAGCTTCTTCTATTCTACTTT.........................................	22	1	4.00	2.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTAGCACA...................................................................................	23	1	4.00	4.00	0.00	0.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	1	4.00	1.00	3.00	0.00
........................................................AGTAAAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	1.00	3.00	0.00
..........................................................TAGAATAGCAGGCTTATCGCA...................................................................................	21	1	4.00	3.00	1.00	0.00
........................................................AGTAGTATAGCAGGCTTATCACA...................................................................................	23	1	4.00	1.00	3.00	0.00
........................................................AGTCGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	1.00	3.00	0.00
...................................................................................................TGATATTCTTCTATTCTACTTT.........................................	22	1	3.00	2.00	1.00	0.00
....................................................................................................GAGATTCTTCTATTCTACTTT.........................................	21	1	3.00	2.00	1.00	0.00
........................................................AGTAGAATxxCAGGCTTATCACA...................................................................................	21	1	3.00	0.00	3.00	0.00
...................................................................................................TGAGATTCTTCCATTCTACTTT.........................................	22	1	3.00	1.00	2.00	0.00
...................................................................................................TGAGATTCTTCTGTTCTACTTT.........................................	22	1	3.00	0.00	3.00	0.00
........................................................AGTAGAATAGCAxGCTTATCACA...................................................................................	22	1	3.00	2.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTATCT.....................................................................................	21	1	3.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGTTTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00
...................................................................................................TGAGATTCTTCTATTCCACTTT.........................................	22	1	3.00	1.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTCACA.....................................................................................	21	1	3.00	0.00	3.00	0.00
........................................................AGTACAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	1.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTGTCACA...................................................................................	23	1	3.00	1.00	2.00	0.00
...................................................................................................TGAGATTCTTCTAATCTACTTT.........................................	22	1	3.00	0.00	3.00	0.00
........................................................AGTGGAATAGCAGGCTTATCAC....................................................................................	22	1	3.00	0.00	2.00	1.00
..........................................................TAGAATAGTAGGCTTATCACA...................................................................................	21	1	3.00	0.00	3.00	0.00
...................................................................................................TGGGATTCTTCTATTCTACTTT.........................................	22	1	3.00	0.00	3.00	0.00
........................................................AGTAGAATAGCAGGCTTATAACA...................................................................................	23	1	3.00	1.00	1.00	1.00

droYak2

GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCGAA---CCC-----------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	2	1117.00	807.00	8.00	238.00	17.00	47.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	2	460.00	379.50	7.00	53.50	11.00	9.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	2	204.00	156.50	1.00	40.00	5.00	1.50
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	2	117.50	74.00	0.00	42.50	0.50	0.50
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	2	47.00	9.50	2.00	35.00	0.50	0.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	2	30.00	29.00	0.00	1.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	2	27.00	12.50	1.50	10.50	1.00	1.50
...............................................................................TGTTTAACTCA-ATCTGCTG...............................................................	19	2	17.50	17.00	0.00	0.00	0.00	0.50
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	2	13.50	5.50	0.50	6.50	1.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	2	11.00	3.00	0.00	6.50	0.50	1.00
..........................................................TAGAATAGCAGGCTTATCACATG.................................................................................	23	2	8.00	5.00	0.00	1.50	0.00	1.50
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	2	6.00	6.00	0.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	2	5.00	0.00	0.00	5.00	0.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCAC....................................................................................	23	2	5.00	3.50	0.00	1.50	0.00	0.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	2	4.50	4.00	0.00	0.00	0.50	0.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	2	4.50	4.50	0.00	0.00	0.00	0.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	2	3.50	3.50	0.00	0.00	0.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCACA...................................................................................	24	2	3.50	2.50	0.00	1.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	2	3.50	2.00	0.00	0.50	0.50	0.50
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	2	3.50	1.00	0.00	2.00	0.50	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	2	3.50	3.00	0.00	0.50	0.00	0.00
........................................................AGTAGAATAGCGGGCTTATCACA...................................................................................	23	2	3.00	2.00	0.00	1.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	2	3.00	2.50	0.00	0.50	0.00	0.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	2	3.00	1.50	0.00	1.50	0.00	0.00
..........................................................TAGAATAGCAGGCTTATCACAT..................................................................................	22	2	3.00	0.50	0.00	2.50	0.00	0.00
........................................................AGTAGAATAGCCGGCTTATCAC....................................................................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	2	2.00	0.50	0.00	1.50	0.00	0.00
...........................................................AGAATAGCAGGCTTATCACA...................................................................................	20	2	2.00	0.50	0.00	1.00	0.00	0.50
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	2	2.00	1.50	0.00	0.00	0.50	0.00
........................................................AGTAGAATAGCTGGCTTATCACA...................................................................................	23	2	2.00	2.00	0.00	0.00	0.00	0.00
........................................................AGTAGGATAGCAGGCTTATCACA...................................................................................	23	2	2.00	1.50	0.00	0.00	0.50	0.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	2	2.00	0.50	0.00	0.00	0.50	1.00
..........................................................TAGAATAGCAGGCTTATCACATGT................................................................................	24	2	2.00	1.00	0.00	1.00	0.00	0.00
........................................................AGTAGAATGGCAGGCTTATCACA...................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
........................................................AATAGAATAGCAGGCTTATCACA...................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTCCTTT.........................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
..................................................................................................CTGAGATTCTTCTATTCTACTTT.........................................	23	2	1.50	1.00	0.00	0.50	0.00	0.00
........................................................AGTAGAATAGCAGGCATATCACA...................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
........................................................AGTAGAATTGCAGGCTTATCACA...................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
........................................................AGGAGAATAGCAGGCTTAGCACA...................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
..........................................................TAGAATAGCAGGCTTATCA.....................................................................................	19	2	1.50	1.00	0.00	0.50	0.00	0.00
........................................................AGTAGAATAGCAGGCTTACCACA...................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	2	1.50	0.50	0.00	1.00	0.00	0.00

droEre2

GGA-T-TGTC------------------------TACGATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAA---CCCG---------A	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	2292.00	998.00	13.00	0.00	1281.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	668.00	334.00	67.00	0.00	267.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	640.00	248.00	6.00	0.00	386.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	96.00	60.00	1.00	0.00	35.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	86.00	9.00	5.00	0.00	72.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	79.00	29.00	6.00	0.00	44.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	78.00	17.00	3.00	0.00	58.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	42.00	9.00	2.00	0.00	31.00
...............................................................................TGTTCCATTCA-ATCTGCTG...............................................................	19	1	34.00	31.00	0.00	0.00	3.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	30.00	24.00	0.00	0.00	6.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	28.00	7.00	1.00	0.00	20.00
........................................................AGTAGAATAGCATGCTTATCACA...................................................................................	23	1	19.00	8.00	0.00	0.00	11.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	16.00	8.00	0.00	0.00	8.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	16.00	0.00	0.00	0.00	16.00
........................................................AGTAGAATAGCAGTCTTATCACA...................................................................................	23	1	16.00	7.00	0.00	0.00	9.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	15.00	13.00	0.00	0.00	2.00
........................................................ATTAGAATAGCAGGCTTATCACA...................................................................................	23	1	14.00	5.00	0.00	0.00	9.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	13.00	3.00	0.00	0.00	10.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	13.00	11.00	0.00	0.00	2.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	12.00	11.00	0.00	0.00	1.00
........................................................AGTATAATAGCAGGCTTATCACA...................................................................................	23	1	10.00	4.00	0.00	0.00	6.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	9.00	3.00	1.00	0.00	5.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	1	8.00	4.00	1.00	0.00	3.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	1	8.00	0.00	0.00	0.00	8.00
...................................................................................................TGAGATTATTCTATTCTACTTT.........................................	22	1	7.00	0.00	0.00	0.00	7.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	7.00	1.00	0.00	0.00	6.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	2.00	0.00	0.00	5.00
........................................................AGTAGAATAACAGGCTTATCACA...................................................................................	23	1	6.00	5.00	0.00	0.00	1.00
..........................................................TAGAATAGCAGGCTTATCACATG.................................................................................	23	1	6.00	2.00	0.00	0.00	4.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	1	6.00	2.00	0.00	0.00	4.00
...................................................................................................TGAGATTCTTCTATTCTA.............................................	18	1	5.00	0.00	0.00	0.00	5.00
........................................................AGTAGAATAGCAAGCTTATCACA...................................................................................	23	1	5.00	4.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTGTCACA...................................................................................	23	1	5.00	3.00	0.00	0.00	2.00
...................................................................................................TTAGATTCTTCTATTCTACTTT.........................................	22	1	5.00	0.00	0.00	0.00	5.00
........................................................AGTAGAATAGCAGGCTTATAACA...................................................................................	23	1	5.00	1.00	0.00	0.00	4.00
........................................................AGTAGAATAGCAGGCCTATCACA...................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................TGATATTCTTCTATTCTACTTT.........................................	22	1	4.00	3.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGTCTTATCAC....................................................................................	22	1	4.00	2.00	0.00	0.00	2.00
........................................................AATAGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	2.00	1.00	0.00	1.00
.............................................................AATAGCAGGCTTATCACA...................................................................................	18	1	4.00	0.00	0.00	0.00	4.00
...................................................................................................TGAGATTCTTATATTCTACTTT.........................................	22	1	4.00	4.00	0.00	0.00	0.00
........................................................AGTATAATAGCAGGCTTATCAC....................................................................................	22	1	4.00	1.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCTTATCAAA...................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................AGTCGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCTTATTACA...................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTATCATA...................................................................................	23	1	3.00	1.00	0.00	0.00	2.00
........................................................AGTAGAATAGCAGGGTTATCACA...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGCCTTATCAC....................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCGTATCACA...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTCATCACA...................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCATATCACA...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................TGAGCTTCTTCTATTCTACTTT.........................................	22	1	3.00	2.00	0.00	0.00	1.00
........................................................AGTGGAATAGCAGGCTTATCAC....................................................................................	22	1	3.00	2.00	0.00	0.00	1.00
........................................................GGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	3.00	1.00	0.00	0.00	2.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGCCTTATCACA...................................................................................	23	1	3.00	1.00	0.00	0.00	2.00

droEug1

GGA-T-TTTC------------------------CGCGATCGGCGGGTCTTTAGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGCAAACATCACC---TCAG---------A

Size

Hit Count

Total Norm

droBia1

GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCG-ATCCGCTGTGAGATTCTTCTATTCTACTTTCTACGA-CACCCGTAAACATCA-------------------

Size

Hit Count

Total Norm

droTak1

GGA-T-TTTC------------------------CACGATCGGCGGGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCAGC----C-----------A

Size

Hit Count

Total Norm

droEle1

GTA-T-TTTC------------------------CTCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-GACCCGTGTACATCACA-----------------

Size

Hit Count

Total Norm

droRho1

GGA-C-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCA-ACCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACA---TAAG---------A

Size

Hit Count

Total Norm

droFic1

GGA-C-TTTC-------------------------TCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCTGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTAAACATCA-------------------

Size

Hit Count

Total Norm

droKik1

GGA-TATTTC------------------------CGCGAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGCTAACATCACC----CAG---------G

Size

Hit Count

Total Norm

droAna3

GAA-TATTCC------------------------AACGACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGAT---CTC-----------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	1161.00	639.00	298.00	95.00	129.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	514.00	261.00	27.00	64.00	162.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	371.00	107.00	193.00	19.00	52.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	193.00	165.00	12.00	14.00	2.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	65.00	39.00	11.00	4.00	11.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	43.00	15.00	21.00	7.00	0.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	42.00	19.00	14.00	6.00	3.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	20.00	12.00	4.00	0.00	4.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	20.00	20.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	12.00	6.00	4.00	2.00	0.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	12.00	0.00	6.00	3.00	3.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	8.00	7.00	1.00	0.00	0.00
.........................................................GTAGAATAGCAGGCTTATCAC....................................................................................	21	1	8.00	3.00	5.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	8.00	5.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCTTATCTC....................................................................................	22	1	7.00	5.00	1.00	1.00	0.00
.........................................................GTAGAATAGCAGGCTTATCACA...................................................................................	22	1	6.00	3.00	2.00	1.00	0.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	1	6.00	3.00	0.00	2.00	1.00
........................................................AGTAGAATAGCATGCTTATCACA...................................................................................	23	1	6.00	4.00	1.00	0.00	1.00
........................................................AGTAGAATAGCAGTCTTATCACA...................................................................................	23	1	6.00	4.00	1.00	0.00	1.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	5.00	1.00	0.00	2.00	2.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	5.00	3.00	2.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	5.00	4.00	1.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTATACTTT.........................................	22	1	4.00	1.00	0.00	3.00	0.00
........................................................AGTAGAATAGCAGGCTTA........................................................................................	18	1	4.00	0.00	1.00	3.00	0.00
...........................................................AGAATAGCAGGCTTATCACA...................................................................................	20	1	4.00	1.00	2.00	0.00	1.00
...................................................................................................TGAGATTCTTCTACTCTACTTT.........................................	22	1	4.00	2.00	0.00	0.00	2.00
........................................................AGTATAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	3.00	1.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCTCA...................................................................................	23	1	4.00	2.00	1.00	1.00	0.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	4.00	2.00	1.00	1.00	0.00
..........................................................TAGAATAGCAGGCTTATCACAG..................................................................................	22	1	4.00	1.00	2.00	0.00	1.00
........................................................AGTAGAATAGCAAGCTTATCACA...................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................TGAGATTATTCTATTCTACTTT.........................................	22	1	3.00	0.00	0.00	2.00	1.00
........................................................AGGAGAATAGCAGGCTTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATGGCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCT.....................................................................................	21	1	3.00	3.00	0.00	0.00	0.00
........................................................ATTAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
........................................................AGTAGAATAGCACGCTTATCACA...................................................................................	23	1	3.00	1.00	0.00	0.00	2.00
..........................................................TAGAATAGCAGGCTTATCACAGG.................................................................................	23	1	3.00	1.00	0.00	0.00	2.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	1	3.00	2.00	1.00	0.00	0.00

droBip1

GGA-TATTTC------------------------AACGACCGGAGTGCTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTTC-TTTA-GCCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGCTAACACCGTTCTACTGG---------G

Size

Hit Count

Total Norm

dp4

GGA-TATGGC-------------------T--AGCACGATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATCTAA---TAGAGC-AGCCCTC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	3527.00	1481.00	1926.00	59.00	61.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	1534.00	215.00	1099.00	203.00	17.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	560.00	119.00	434.00	6.00	1.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	346.00	280.00	40.00	20.00	6.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	99.00	67.00	28.00	3.00	1.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	98.00	27.00	45.00	24.00	2.00
...............................................................................TGTTCCATTCA-ATCCGCTG...............................................................	19	1	81.00	0.00	75.00	1.00	5.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	56.00	27.00	29.00	0.00	0.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	27.00	0.00	27.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	27.00	6.00	19.00	0.00	2.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	25.00	6.00	11.00	8.00	0.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	22.00	13.00	8.00	0.00	1.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	20.00	0.00	20.00	0.00	0.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	1	12.00	0.00	11.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATTATACTTT.........................................	22	1	11.00	0.00	9.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	1	10.00	1.00	9.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	10.00	3.00	7.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTGTCACA...................................................................................	23	1	9.00	0.00	9.00	0.00	0.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	8.00	0.00	6.00	2.00	0.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	8.00	4.00	3.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	1	8.00	2.00	6.00	0.00	0.00
....................................................................................................GAGATTCTTCTATTCTACTTT.........................................	21	1	7.00	0.00	6.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	7.00	3.00	4.00	0.00	0.00
...................................................................................................TGAGTTTCTTCTATTCTACTTT.........................................	22	1	7.00	0.00	7.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTCCTTT.........................................	22	1	7.00	0.00	4.00	3.00	0.00
........................................................AGTAGAATAGCAGGCCTATCACA...................................................................................	23	1	7.00	3.00	4.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCTCA...................................................................................	23	1	7.00	1.00	6.00	0.00	0.00
........................................................AGTAGGATAGCAGGCTTATCACA...................................................................................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	1	7.00	0.00	7.00	0.00	0.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	1	6.00	0.00	5.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTA........................................	23	1	6.00	1.00	3.00	2.00	0.00
........................................................AGTAGAATAGCTGGCTTATCACA...................................................................................	23	1	6.00	1.00	5.00	0.00	0.00
........................................................AGTAGAATAGCAGACTTATCACA...................................................................................	23	1	6.00	1.00	5.00	0.00	0.00
..........................................................TAGAATAGCAGGCTTATCACATG.................................................................................	23	1	6.00	2.00	4.00	0.00	0.00
........................................................AGGAGAATAGAAGGCTTATCACA...................................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTACCACA...................................................................................	23	1	5.00	1.00	4.00	0.00	0.00
...................................................................................................TGAGATTATTCTATTCTACTTT.........................................	22	1	5.00	0.00	5.00	0.00	0.00
...................................................................................................TGGGATTCTTCTATTCTACTTT.........................................	22	1	5.00	1.00	4.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	5.00	0.00	5.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAAA...................................................................................	23	1	5.00	1.00	4.00	0.00	0.00
...................................................................................................TGAGATTCTTATATTCTACTTT.........................................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCATA...................................................................................	23	1	5.00	1.00	4.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTC........................................	23	1	5.00	2.00	3.00	0.00	0.00
...................................................................................................TGAGGTTCTTCTATTCTACTTT.........................................	22	1	5.00	0.00	4.00	0.00	1.00
........................................................AGTAGAATGGCAGGCTTATCACA...................................................................................	23	1	5.00	2.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCT.....................................................................................	21	1	5.00	3.00	0.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	5.00	1.00	4.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	5.00	1.00	4.00	0.00	0.00
........................................................AGTAGAATACCAGGCTTATCACA...................................................................................	23	1	5.00	2.00	2.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTTT.......................................................................................	19	1	4.00	4.00	0.00	0.00	0.00
........................................................AGTAGAATAACAGGCTTATCACA...................................................................................	23	1	4.00	1.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAT....................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
...................................................................................................TGAGCTTCTTCTATTCTACTTT.........................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................AGTAGAATAGCAGGTTTATCACA...................................................................................	23	1	4.00	1.00	2.00	1.00	0.00
........................................................AGTGGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	1.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCGTATCAC....................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTGCTTT.........................................	22	1	4.00	0.00	4.00	0.00	0.00
...................................................................................................TGAGATTCTTCTTTTCTACTTT.........................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCCCC...................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................AGTAGAATAGCATGCTTATCACA...................................................................................	23	1	4.00	1.00	3.00	0.00	0.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	3.00	0.00	2.00	0.00	1.00
........................................................AGTAGAATAGCGGGCTTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGATTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
...................................................................................................TGAGATTCTTCTCTTCTACTTT.........................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCGTATCACA...................................................................................	23	1	3.00	1.00	2.00	0.00	0.00
...................................................................................................TGGGATTCTTCTATTCTTCTTT.........................................	22	1	3.00	0.00	2.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACCTT.........................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................GGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTCATCACA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTA........................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGTAGGCTTATCACA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATTACA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................AGGAGAATAGCAGGCTTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTAGCACA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAA....................................................................................	22	1	3.00	2.00	1.00	0.00	0.00
...........................................................AGAATAGCAGGCTTATCACA...................................................................................	20	1	3.00	2.00	1.00	0.00	0.00
........................................................AATAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	1.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAGA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
...................................................................................................TGAGAGTCTTCTATTCTACTTT.........................................	22	1	3.00	0.00	3.00	0.00	0.00
...................................................................................................TGTGATTCTTCTATTCTACTTT.........................................	22	1	3.00	0.00	3.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTAATTT.........................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATAACA...................................................................................	23	1	3.00	0.00	2.00	1.00	0.00

droPer1

G-------------------------------------ATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATC--------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	1335.00	274.00	287.00	12.00	6.00	756.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	502.00	33.00	340.00	7.00	1.00	121.00
...............................................................................TGTTCCATTCA-ATCCGCTG...............................................................	19	1	365.00	0.00	18.00	0.00	0.00	347.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	129.00	20.00	97.00	0.00	0.00	12.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	114.00	88.00	11.00	2.00	2.00	11.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	58.00	36.00	13.00	0.00	1.00	8.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	31.00	0.00	4.00	0.00	1.00	26.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	28.00	2.00	16.00	1.00	0.00	9.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	21.00	11.00	8.00	0.00	0.00	2.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	20.00	0.00	1.00	0.00	0.00	19.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	13.00	4.00	4.00	1.00	2.00	2.00
.........................................................GTAGAATAGCAGGCTTATCACA...................................................................................	22	1	11.00	0.00	1.00	0.00	0.00	10.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	9.00	3.00	5.00	0.00	0.00	1.00
................................................................................GTTCCATTCA-ATCCGCTG...............................................................	18	1	9.00	0.00	0.00	0.00	0.00	9.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	9.00	0.00	9.00	0.00	0.00	0.00
...........................................................................................ATCCGCTGTGAGATTCTTCT...................................................	20	1	8.00	0.00	1.00	0.00	0.00	7.00
.......................................................................................................ATTCTTCTATTCTACTTT.........................................	18	1	7.00	0.00	0.00	0.00	0.00	7.00
......................................................................................................GATTCTTCTATTCTACTTT.........................................	19	1	6.00	0.00	1.00	0.00	0.00	5.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	5.00	0.00	3.00	0.00	0.00	2.00
...........................................................AGAATAGCAGGCTTATCACA...................................................................................	20	1	5.00	0.00	1.00	0.00	0.00	4.00
..............................................................................................CGCTGTGAGATTCTTCTATT................................................	20	1	5.00	0.00	0.00	0.00	0.00	5.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
....................................................................................................GAGATTCTTCTATTCTACTTT.........................................	21	1	4.00	1.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATACCAGGCTTATCACA...................................................................................	23	1	4.00	0.00	0.00	0.00	0.00	4.00
........................................................AGTAGAATAGCAAGCTTATCACA...................................................................................	23	1	4.00	0.00	1.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGTCTTATCACA...................................................................................	23	1	3.00	0.00	1.00	0.00	0.00	2.00
...............................................................................TGTTCCATTCA-ATCCGCGG...............................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCTTATCAT....................................................................................	22	1	3.00	1.00	2.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCCC....................................................................................	22	1	3.00	0.00	2.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTATTACA...................................................................................	23	1	3.00	0.00	2.00	0.00	0.00	1.00
.............................................................................................CCGCTGTGAGATTCTTCTATTCTACTTT.........................................	28	1	3.00	0.00	0.00	0.00	0.00	3.00
............................................................GAATAGCAGGCTTATCACA...................................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
...................................................................................................TGAGATTCTTCTGTTCTACTTT.........................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00

droWil1

TGAGT-TTTG------A-------CTATGACT--ATCTAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA-----------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	19307.00	290.00	18556.00	190.00	271.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	4348.00	226.00	4038.00	35.00	49.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	1563.00	14.00	1498.00	50.00	1.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	410.00	63.00	334.00	13.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	262.00	40.00	206.00	11.00	5.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	243.00	11.00	226.00	5.00	1.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	174.00	19.00	150.00	3.00	2.00
..........................................................TAGAATAGCAGGCTTATCACATG.................................................................................	23	1	64.00	3.00	61.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	55.00	14.00	33.00	6.00	2.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	46.00	1.00	45.00	0.00	0.00
........................................................ATTAGAATAGCAGGCTTATCACA...................................................................................	23	1	44.00	1.00	43.00	0.00	0.00
........................................................AGTATAATAGCAGGCTTATCACA...................................................................................	23	1	41.00	1.00	39.00	1.00	0.00
........................................................AGTAGAATAGCAGTCTTATCACA...................................................................................	23	1	37.00	0.00	37.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	36.00	14.00	21.00	0.00	1.00
........................................................AGTAGAATAGCATGCTTATCACA...................................................................................	23	1	30.00	0.00	30.00	0.00	0.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	1	29.00	0.00	29.00	0.00	0.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	28.00	0.00	28.00	0.00	0.00
........................................................AGTAxAATAGCAGGCTTATCACA...................................................................................	22	1	27.00	0.00	27.00	0.00	0.00
........................................................AGTAGAATAGCGGGCTTATCACA...................................................................................	23	1	26.00	0.00	25.00	1.00	0.00
.........................................................GTAGAATAGCAGGCTTATCACA...................................................................................	22	1	23.00	0.00	21.00	0.00	2.00
........................................................AGTAAAATAGCAGGCTTATCACA...................................................................................	23	1	22.00	0.00	22.00	0.00	0.00
........................................................AGTAGAATACCAGGCTTATCACA...................................................................................	23	1	22.00	1.00	21.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	22.00	0.00	21.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	21.00	0.00	10.00	0.00	11.00
........................................................AGTAGGATAGCAGGCTTATCACA...................................................................................	23	1	21.00	1.00	20.00	0.00	0.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	21.00	3.00	15.00	3.00	0.00
........................................................ACTAGAATAGCAGGCTTATCACA...................................................................................	23	1	20.00	1.00	18.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTACCACA...................................................................................	23	1	20.00	0.00	19.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	1	20.00	0.00	20.00	0.00	0.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	20.00	0.00	19.00	1.00	0.00
........................................................AGTGGAATAGCAGGCTTATCACA...................................................................................	23	1	19.00	1.00	18.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	19.00	2.00	15.00	0.00	2.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	18.00	0.00	16.00	0.00	2.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	18.00	0.00	17.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTCATCACA...................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
........................................................AGTAGAGTAGCAGGCTTATCACA...................................................................................	23	1	17.00	0.00	17.00	0.00	0.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	17.00	0.00	17.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	16.00	1.00	13.00	1.00	1.00
........................................................AATAGAATAGCAGGCTTATCACA...................................................................................	23	1	16.00	0.00	15.00	1.00	0.00
........................................................AGTAGACTAGCAGGCTTATCACA...................................................................................	23	1	16.00	0.00	15.00	0.00	1.00
...................................................................................................TGAGATTCTTCTATTCTA.............................................	18	1	16.00	0.00	15.00	1.00	0.00
........................................................AGTACAATAGCAGGCTTATCACA...................................................................................	23	1	14.00	0.00	14.00	0.00	0.00
........................................................AGTAGAACAGCAGGCTTATCACA...................................................................................	23	1	14.00	0.00	14.00	0.00	0.00
........................................................AGTAGAATGGCAGGCTTATCACA...................................................................................	23	1	14.00	1.00	13.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATAACA...................................................................................	23	1	13.00	0.00	13.00	0.00	0.00
........................................................AGTAGAATAGCAGACTTATCACA...................................................................................	23	1	13.00	1.00	12.00	0.00	0.00
...........................................................AGAATAGCAGGCTTATCACA...................................................................................	20	1	13.00	1.00	12.00	0.00	0.00
........................................................AGTAGAATAGCAGGCCTATCACA...................................................................................	23	1	13.00	0.00	13.00	0.00	0.00
........................................................GGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	13.00	1.00	12.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCATA...................................................................................	23	1	13.00	0.00	13.00	0.00	0.00
...................................................................................................TGAGCTTCTTCTATTCTACTTT.........................................	22	1	11.00	0.00	11.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTA........................................................................................	18	1	11.00	0.00	10.00	1.00	0.00
........................................................AGTAGAATCGCAGGCTTATCACA...................................................................................	23	1	10.00	0.00	10.00	0.00	0.00
........................................................AGTAGAATAACAGGCTTATCACA...................................................................................	23	1	10.00	0.00	9.00	1.00	0.00
........................................................AGTAGAATxxCAGGCTTATCACA...................................................................................	21	1	10.00	0.00	10.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAAA...................................................................................	23	1	10.00	0.00	9.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATCCTACTTT.........................................	22	1	9.00	0.00	9.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATTACA...................................................................................	23	1	9.00	0.00	9.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	1	9.00	0.00	9.00	0.00	0.00
...................................................................................................TTAGATTCTTCTATTCTACTTT.........................................	22	1	8.00	0.00	8.00	0.00	0.00
...................................................................................................TGATATTCTTCTATTCTACTTT.........................................	22	1	8.00	1.00	7.00	0.00	0.00
.......................................................CAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	8.00	0.00	7.00	1.00	0.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	1	8.00	1.00	7.00	0.00	0.00
..........................................................TAGAATAGCAGGCTTATCACAT..................................................................................	22	1	8.00	7.00	1.00	0.00	0.00
....................................................................................................GAGATTCTTCTATTCTACTTT.........................................	21	1	8.00	1.00	7.00	0.00	0.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	1	8.00	0.00	8.00	0.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCAC....................................................................................	23	1	7.00	0.00	5.00	0.00	2.00
........................................................AGTCGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	1.00	5.00	1.00	0.00
...................................................................................................TGAGATTCTTCCATTCTACTTT.........................................	22	1	7.00	1.00	6.00	0.00	0.00
...................................................................................................CGAGATTCTTCTATTCTACTTT.........................................	22	1	6.00	1.00	5.00	0.00	0.00
........................................................AGTAGAATAGCAGCCTTATCACA...................................................................................	23	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................CTGAGATTCTTCTATTCTACTTT.........................................	23	1	6.00	0.00	6.00	0.00	0.00
........................................................TGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	6.00	0.00	6.00	0.00	0.00
........................................................AGTAGAATAGTAGGCTTATCACA...................................................................................	23	1	6.00	0.00	5.00	1.00	0.00
........................................................AGTAGAATAGCAAGCTTATCACA...................................................................................	23	1	6.00	0.00	6.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	6.00	1.00	5.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTA........................................	23	1	5.00	2.00	3.00	0.00	0.00
........................................................ATTAGAATAGCAGGCTTATCAC....................................................................................	22	1	5.00	1.00	3.00	1.00	0.00
...................................................................................................TGAGGTTCTTCTATTCTACTTT.........................................	22	1	5.00	0.00	5.00	0.00	0.00
...............................................................................TGTTCCCTTTACAACCGGTG...............................................................	20	1	5.00	0.00	5.00	0.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	5.00	0.00	2.00	0.00	3.00
...................................................................................................TGAGATTCTTCTATTCTTCTTT.........................................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................AGTAGAATAGCACGCTTATCACA...................................................................................	23	1	5.00	0.00	5.00	0.00	0.00
...................................................................................................TGAGATTCCTCTATTCTACTTT.........................................	22	1	5.00	0.00	5.00	0.00	0.00
...................................................................................................TGAGATTATTCTATTCTACTTT.........................................	22	1	5.00	0.00	5.00	0.00	0.00
........................................................AGCAGAATAGCAGGCTTATCAC....................................................................................	22	1	5.00	1.00	3.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATTCCACTTT.........................................	22	1	4.00	0.00	4.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACCTT.........................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................CGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	1.00	2.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTC........................................	23	1	4.00	0.00	4.00	0.00	0.00
............................................................GAATAGCAGGCTTATCACA...................................................................................	19	1	4.00	0.00	4.00	0.00	0.00
...................................................................................................TGAGATTCTTATATTCTACTTT.........................................	22	1	4.00	0.00	4.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTGTCACA...................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
........................................................AGTAGAATTGCAGGCTTATCACA...................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCATGCTTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTCT.........................................	22	1	3.00	1.00	2.00	0.00	0.00
........................................................AGTAGAATAACAGGCTTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAT....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTCATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACATGT................................................................................	26	1	3.00	1.00	2.00	0.00	0.00
........................................................AGGAGAATAGCAGGCTTATCAC....................................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droVir3

TGT-T-TTTT-----TAATGTTCTCTATAT--ATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC--------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	2931.00	1295.00	8.00	511.00	1102.00	15.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	872.00	633.00	14.00	115.00	107.00	3.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	351.00	308.00	3.00	10.00	30.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	230.00	113.00	4.00	75.00	37.00	1.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	156.00	135.00	3.00	4.00	14.00	0.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	61.00	44.00	0.00	12.00	5.00	0.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	36.00	30.00	0.00	6.00	0.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	32.00	27.00	0.00	1.00	4.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	32.00	1.00	0.00	1.00	30.00	0.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	31.00	25.00	0.00	3.00	3.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	21.00	6.00	0.00	1.00	14.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	13.00	12.00	0.00	0.00	1.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCAC....................................................................................	23	1	12.00	6.00	0.00	2.00	4.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	12.00	6.00	0.00	5.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	12.00	10.00	0.00	2.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCT.....................................................................................	21	1	11.00	11.00	0.00	0.00	0.00	0.00
.......................................................AAGTAGAATAGCAGGCTTATCA.....................................................................................	22	1	10.00	7.00	0.00	1.00	2.00	0.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	9.00	2.00	0.00	6.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	9.00	2.00	0.00	4.00	2.00	1.00
........................................................AGTAGAATAGCAGGCTTATCACAT..................................................................................	24	1	8.00	6.00	0.00	0.00	2.00	0.00
........................................................ATTAGAATAGCAGGCTTATCACA...................................................................................	23	1	7.00	5.00	0.00	1.00	1.00	0.00
........................................................AGTAGAATCGCAGGCTTATCACA...................................................................................	23	1	7.00	1.00	0.00	1.00	5.00	0.00
........................................................AGTAGAATACCAGGCTTATCACA...................................................................................	23	1	5.00	1.00	0.00	2.00	2.00	0.00
........................................................AGTAGAATAGCAGCCTTATCACA...................................................................................	23	1	5.00	1.00	0.00	3.00	1.00	0.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	5.00	0.00	0.00	1.00	4.00	0.00
........................................................GGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	5.00	0.00	0.00	2.00	3.00	0.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	5.00	2.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACTT..................................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
........................................................AGTAGAATAGCAGTCTTATCACA...................................................................................	23	1	4.00	1.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATAACA...................................................................................	23	1	4.00	2.00	0.00	1.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAT....................................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................AGTAGAGTAGCAGGCTTATCACA...................................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
.........................................................GTAGAATAGCAGGCTTATCACA...................................................................................	22	1	4.00	2.00	0.00	0.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCAAA...................................................................................	23	1	4.00	2.00	1.00	1.00	0.00	0.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	1	4.00	0.00	0.00	2.00	2.00	0.00
.......................................................CAGTAGAATAGCAGGCTTATCACA...................................................................................	24	1	3.00	2.00	0.00	1.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	1	3.00	2.00	0.00	0.00	1.00	0.00
........................................................AGTAGAATAGCAAGCTTATCACA...................................................................................	23	1	3.00	1.00	0.00	1.00	1.00	0.00
........................................................AGTAGAATAGCGGGCTTATCACA...................................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
......................................................CAAGTAGAATAGCAGGCTTATCA.....................................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
........................................................AGTAGAATAGCAGGCTTATCTCA...................................................................................	23	1	3.00	0.00	0.00	2.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTA........................................................................................	18	1	3.00	0.00	0.00	2.00	1.00	0.00
........................................................AGTAGAATAACAGGCTTATCACA...................................................................................	23	1	3.00	1.00	0.00	2.00	0.00	0.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
........................................................AGTAGAATAGCAGGCCTATCACA...................................................................................	23	1	3.00	0.00	0.00	0.00	3.00	0.00
...................................................................................................TGAGATTCTTCTATTCTACTTC.........................................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
...................................................................................................TGAGATTCTTCTGTTCTACTTT.........................................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
........................................................AGTAGAATAGCAGGCTTATT......................................................................................	20	1	3.00	2.00	0.00	0.00	1.00	0.00

droMoj3

GTG-T-TTTC------C-------CTGTGATT--CTCAGTCGGTGTGGA-TTGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTCGTT---TTCG----------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	3547.00	2404.00	24.00	16.00	1103.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	894.00	382.00	9.00	8.00	495.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	345.00	171.00	1.00	3.00	170.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	252.00	220.00	5.00	3.00	24.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	99.00	73.00	1.00	1.00	24.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	60.00	51.00	3.00	0.00	6.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	41.00	33.00	2.00	0.00	6.00
..........................................................TAGAATAGCAGGCTTATCACA...................................................................................	21	1	37.00	13.00	0.00	0.00	24.00
...............................................................................TGTACCATTTG-ACCGAGTG...............................................................	19	1	35.00	9.00	0.00	0.00	26.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	14.00	14.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTAT.......................................................................................	19	1	11.00	10.00	1.00	0.00	0.00
........................................................AGGAGAATAGCAGGCTTATCACA...................................................................................	23	1	11.00	0.00	0.00	0.00	11.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	10.00	1.00	0.00	1.00	8.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	10.00	6.00	0.00	0.00	4.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	10.00	1.00	0.00	0.00	9.00
........................................................AGTAGAATAGCAGGCTTGTCACA...................................................................................	23	1	7.00	1.00	0.00	0.00	6.00
..........................................................TAGAATAGCAGGCTTATCACATG.................................................................................	23	1	6.00	2.00	0.00	0.00	4.00
........................................................AGTAGAATAGCAGGCTTATCT.....................................................................................	21	1	6.00	6.00	0.00	0.00	0.00
..........................................................TAGAATAGCAGGCTTATCAC....................................................................................	20	1	6.00	0.00	0.00	0.00	6.00
........................................................AGTAGAATAGCCGGCTTATCACA...................................................................................	23	1	5.00	0.00	1.00	1.00	3.00
.........................................................GTAGAATAGCAGGCTTATCACA...................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
........................................................AGTAGAATAGAAGGCTTATCACA...................................................................................	23	1	5.00	1.00	0.00	1.00	3.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	5.00	1.00	1.00	1.00	2.00
........................................................AGTAGAATAGCAGGCCTATCACA...................................................................................	23	1	5.00	5.00	0.00	0.00	0.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................AGTAGAATAGCAGTCTTATCACA...................................................................................	23	1	4.00	2.00	0.00	0.00	2.00
........................................................AGTAGAATAGCAGGCTTATCACAA..................................................................................	24	1	4.00	3.00	0.00	0.00	1.00
........................................................AGTATAATAGCAGGCTTATCACA...................................................................................	23	1	4.00	3.00	0.00	0.00	1.00
........................................................AGTAGAGTAGCAGGCTTATCACA...................................................................................	23	1	4.00	3.00	0.00	0.00	1.00
........................................................AGTAGGATAGCAGGCTTATCACA...................................................................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................AGTAGAATATCAGGCTTATCACA...................................................................................	23	1	4.00	3.00	0.00	0.00	1.00
........................................................AGTAGAATAACAGGCTTATCACA...................................................................................	23	1	4.00	1.00	0.00	0.00	3.00
........................................................AGTAGAACAGCAGGCTTATCACA...................................................................................	23	1	4.00	0.00	0.00	0.00	4.00
........................................................AGTAGAATAGCAGGCTTATCATA...................................................................................	23	1	3.00	1.00	1.00	0.00	1.00
........................................................TGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCGTATCACA...................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................AGGAGAATAGCAGGATTATCACA...................................................................................	23	1	3.00	0.00	0.00	0.00	3.00
........................................................AGTAGAATAGCAGGCTTA........................................................................................	18	1	3.00	2.00	0.00	1.00	0.00
...................................................................................................TGAGATTCTTCTATTCTA.............................................	18	1	3.00	3.00	0.00	0.00	0.00
........................................................ATTAGAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	3.00	0.00	0.00	0.00
...................................................................................................TGAGATTCTTCTGTTCTACTTT.........................................	22	1	3.00	1.00	0.00	0.00	2.00
........................................................AGTAAAATAGCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
...................................................................................................TGAGTTTCTTCTATTCTACTTT.........................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................TAGAATAGCAGGCTTATCA.....................................................................................	19	1	3.00	3.00	0.00	0.00	0.00
........................................................AGTAGAATACCAGGCTTATCACA...................................................................................	23	1	3.00	2.00	0.00	0.00	1.00
........................................................AGTAGAATAGCAGGCTTATCAA....................................................................................	22	1	3.00	1.00	1.00	0.00	1.00

droGri2

GTG-TGTGCAGGTTTTATGGTTTTTGTTTT--ACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACA---TTCAGTTAAGTTTA	Size	Hit Count	Total Norm	V109 Male body
........................................................AGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	346.00	346.00
...................................................................................................TGAGATTCTTCTATTCTACTTT.........................................	22	1	86.00	86.00
........................................................AGTAGAATAGCAGGCTTATCA.....................................................................................	21	1	21.00	21.00
........................................................AGTAGAATAGCAGGCTTATCAC....................................................................................	22	1	10.00	10.00
...................................................................................................TGAGATTCTTCTATTCTACTT..........................................	21	1	9.00	9.00
...................................................................................................TGAGATTCTTCTATTCTACTTTT........................................	23	1	6.00	6.00
........................................................AGTAGAATAGCAGGCTTCTCACA...................................................................................	23	1	5.00	5.00
........................................................AGTAGAATAGCAGGCTTATCACT...................................................................................	23	1	4.00	4.00
........................................................AGTAGAATAGCAGGCTTTTCACA...................................................................................	23	1	4.00	4.00
........................................................AGTAGAATAGCAGGCTTATCACC...................................................................................	23	1	4.00	4.00
........................................................AGTAGAATAGCAGGCTTATCACG...................................................................................	23	1	3.00	3.00
........................................................AGTAGAATTGCAGGCTTATCACA...................................................................................	23	1	3.00	3.00
........................................................AGTAGCATAGCAGGCTTATCACA...................................................................................	23	1	2.00	2.00
........................................................AGTAGAATAGCAGGCTTGTCACA...................................................................................	23	1	2.00	2.00
...................................................................................................TGAGATTCTTCTATTCTTCTTT.........................................	22	1	2.00	2.00
........................................................AGTAGAATAGCAGGCTTATC......................................................................................	20	1	2.00	2.00
...................................................................................................TGAGATCCTTCTATTCTACTTT.........................................	22	1	2.00	2.00
...................................................................................................TGTGATTCTTCTATTCTACTTT.........................................	22	1	1.00	1.00
........................................................AGTAGAATCGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
...................................................................................................TGAGACTCTTCTATTCTACTTT.........................................	22	1	1.00	1.00
........................................................AGTAGAATGGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
..........................................................TAGAATAGCAGGCTTATCA.....................................................................................	19	1	1.00	1.00
........................................................AGTAGAATAGCAGGCTTATCGCA...................................................................................	23	1	1.00	1.00
........................................................AGCAGAATAGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
...................................................................................................TGAGATTCTTCTATTCTACT...........................................	20	1	1.00	1.00
..................................................................................................CTGAGGTTCTTCTATTCTACTTT.........................................	23	1	1.00	1.00
...................................................................................................TGACATTCTTCTATTCTACTTT.........................................	22	1	1.00	1.00
........................................................GGTAGAATAGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
........................................................AGTAGAATAGCCGGCTTATCA.....................................................................................	21	1	1.00	1.00
........................................................AGTAGAATAGCAGGCTTATCACAT..................................................................................	24	1	1.00	1.00
..................................................................................................CTGAGATTCTTCTATTCTACTTT.........................................	23	1	1.00	1.00
...................................................................................................TGAGATTCTTCTATTCTCCTTT.........................................	22	1	1.00	1.00
........................................................AGTAxAATAGCAGGCTTATCACA...................................................................................	22	1	1.00	1.00
...................................................................................................TGAGATTCTTCTATTCTAC............................................	19	1	1.00	1.00
........................................................AGAAGAATAGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
........................................................AGTAGAATAGCAGGATTATCACA...................................................................................	23	1	1.00	1.00
........................................................AGTAGATTAGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
..........................................................TAGAATAGCAGTCTTATCA.....................................................................................	19	1	1.00	1.00
...................................................................................................TAAGATTCTTCTATTCTACTTT.........................................	22	1	1.00	1.00
........................................................AGTGGAATAGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
........................................................AGTAGAAAAGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
..........................................................TAGAATAGAAGGCTTATCACA...................................................................................	21	1	1.00	1.00
........................................................AGTAGAATAGCAGGCTTATCCCA...................................................................................	23	1	1.00	1.00
........................................................AGTAGACTAGCAGGCTTATCACA...................................................................................	23	1	1.00	1.00
.......................................................AAGTAGAATAGCAGGCTTATC......................................................................................	21	1	1.00	1.00

Generated: 04/20/2012 at 05:19:38 EDT

dme-mir-958

chr3L:22662389-22662480 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup