dme-mir-958- 12- and 20-way alignments

dme-mir-958	chr3L:22662389-22662480 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 22662402-22662423
   star strand at position 22662443-22662465
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:22662374-22662495 -	G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTATGGCAAGTAGAATAGCAGGCTTATCACATGTTTAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCGA
droSim1	chr3L:21947666-21947787 -	G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCGA
droSec1	super_11:2578674-2578788 -	G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA-------
droYak2	chr3L:23128644-23128763 -	G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCGAACCC--
droEre2	scaffold_4784:22312266-22312387 -	G-------------------GATTG----TCTA----------------C----------------------------------GATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAACCCGA
droAna3	scaffold_13337:22380395-22380515 -	G-------------------AATAT----TCCA---------------AC----------------------------------GACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGATCTC--
dp4	chrXR_group8:344176-344293 -	G-------------------GATATGGCTAGCA----------------C----------------------------------GATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACAT---------
droPer1	super_96:132292-132394 +	------------------------------------------------------------------------------------GATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACAT---------
droWil1	Unknown	T-------------------GAGTT----TTGA----------------C----------------------------------TAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA-----
droVir3	scaffold_13049:17089365-17089522 +	A-------------------AAT-------GCACAGTAGAAGTTTTTCCTTTGTGTT---TTTTTAATGTTCTCTATATATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC--------
droMoj3	scaffold_6680:22084799-22084928 +	GCAAAATGTGTTTTCCCTGTGATTC----T-------------------C----------------------------------AGTCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTC--------
droGri2	scaffold_15110:15103985-15104136 -	A-------------------TATGT----TTCC---------------ACGTGTGTGCAGGTTTTATGGTTTTTGTTTTACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACA-----

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:22662374-22662495 -	NA	GGA-T-TTTC------------------------CACGATCGGCGTGTCTATGGCAAGTAGAATAGCAGGCTTATCACATGTTTAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACAC---CC-G---------A
droSim1	chr3L:21947666-21947787 -	1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACAC---CC-G---------A
droSec1	super_11:2578674-2578788 -	1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA--------------------
droYak2	chr3L:23123705-23123824 -	1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCAAAC---CC------------
droEre2	scaffold_4784:22312266-22312387 -	1	GGA-T-TGTC------------------------TACGATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAAC---CC-G---------A
droEug1	scf7180000409801:238269-238390 -	1	GGA-T-TTTC------------------------CGCGATCGGCGGGTCTTTAGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGCAAACATCACCT---CA-G---------A
droBia1	scf7180000302377:590001-590115 +	1	GGA-T-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCG-ATCCGCTGTGAGATTCTTCTATTCTACTTTCTACGA-CACCCGTAAACATCA--------------------
droTak1	scf7180000415263:76348-76466 -	1	GGA-T-TTTC------------------------CACGATCGGCGGGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCAGC----C------------A
droEle1	scf7180000491199:65271-65387 +	1	GTA-T-TTTC------------------------CTCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-GACCCGTGTACATCACA------------------
droRho1	scf7180000773586:33589-33710 +	1	GGA-C-TTTC------------------------CACGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTTGTTCA-ACCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACAT---AA-G---------A
droFic1	scf7180000453830:377334-377447 +	1	GGA-C-TTTC-------------------------TCGATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCTGTTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTAAACATCA--------------------
droKik1	scf7180000299918:44958-45080 -	1	GGA-TATTTC------------------------CGCGAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGCTAACATCACC----CA-G---------G
droAna3	scaffold_13337:22380395-22380515 -	1	GAA-TATTCC------------------------AACGACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGATC---TC------------
droBip1	scf7180000396426:441185-441310 +	1	GGA-TATTTC------------------------AACGACCGGAGTGCTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTTC-TTTA-GCCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGCTAACACCGTTCTACTG-G---------G
dp4	chrXR_group8:344159-344293 -	1	GGA-TATGGC-------------------T--AGCACGATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATCTAAT----AGAGC-AGCCCTC
droPer1	super_96:132292-132395 +	2	G-------------------------------------ATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACATC---------------------
droWil1	scaffold_180698:7060886-7061014 +	1	TGAGT-TTTG------A-------CTATGACT--ATCTAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA------------------
droVir3	scaffold_13049:17089392-17089522 +	1	TGT-T-TTTT-----TAATGTTCTCTATAT--ATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC---------------------
droMoj3	scaffold_6680:22084806-22084935 +	1	GTG-T-TTTC------C-------CTGTGATT--CTCAGTCGGTGTGGA-TTGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTCGTTT---TC-G----------
droGri2	scaffold_15110:15103971-15104124 -	2	GTG-TGTGCAGGTTTTATGGTTTTTGTTTT--ACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACAT---TC-AGTTAAGTTTA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTATGGCAAGTAGAATAGCAGGCTTATCACATGTTTAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCGA

Size

Hit Count

Total Norm

droSim1

G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCACACCCGA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	8330.00	2335.00	59.00	584.00	5352.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	1754.00	564.00	30.00	496.00	664.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	600.00	510.00	5.00	18.00	67.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	197.00	172.00	0.00	2.00	23.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	185.00	1.00	0.00	26.00	158.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	124.00	31.00	1.00	2.00	90.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	118.00	39.00	5.00	52.00	22.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	73.00	70.00	0.00	1.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	37.00	9.00	1.00	19.00	8.00
..............................................................................................................................TGTTCAATTCA-ATCTGCTG...................................................	19	1	32.00	17.00	0.00	3.00	12.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	32.00	7.00	2.00	17.00	6.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	28.00	24.00	0.00	0.00	4.00
........................................................................................................GTAGAATAGCAGGCTTATCACA.......................................................................	22	1	26.00	2.00	0.00	2.00	22.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	25.00	1.00	0.00	0.00	24.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	19.00	7.00	0.00	0.00	12.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	14.00	8.00	3.00	2.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	14.00	12.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGCGGGCTTATCACA.......................................................................	23	1	13.00	6.00	0.00	0.00	7.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	13.00	9.00	0.00	0.00	4.00
.........................................................................................................TAGAATAGCAGGCTTATCACATG.....................................................................	23	1	13.00	9.00	1.00	0.00	3.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	11.00	2.00	0.00	0.00	9.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	11.00	11.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCATA.......................................................................	23	1	10.00	9.00	0.00	0.00	1.00
......................................................................................................AAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	10.00	1.00	0.00	0.00	9.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	9.00	9.00	0.00	0.00	0.00
......................................................................................................................................................ATTCTTCTATTCTACTTT.............................	18	1	9.00	0.00	0.00	4.00	5.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	9.00	1.00	0.00	0.00	8.00
.......................................................................................................AGTAGAATAGCAGGCTCATCACA.......................................................................	23	1	8.00	6.00	0.00	0.00	2.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTC.............................	22	1	8.00	0.00	1.00	2.00	5.00
.......................................................................................................AGTAGAGTAGCAGGCTTATCACA.......................................................................	23	1	8.00	3.00	0.00	0.00	5.00
....................................................................................................................................................AGATTCTTCTATTCTACTTT.............................	20	1	8.00	0.00	0.00	0.00	8.00
..................................................................................................................................................TGAGTTTCTTCTATTCTACTTT.............................	22	1	8.00	6.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATTACA.......................................................................	23	1	7.00	2.00	0.00	0.00	5.00
.......................................................................................................AATAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	7.00	0.00	0.00	0.00
.......................................................................................................GGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	0.00	0.00	1.00	6.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	6.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATxxCAGGCTTATCACA.......................................................................	21	1	6.00	0.00	0.00	3.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTGTCACA.......................................................................	23	1	6.00	4.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTAACACA.......................................................................	23	1	6.00	2.00	0.00	0.00	4.00
.......................................................................................................AGTAGAATAGCATGCTTATCACA.......................................................................	23	1	6.00	3.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	6.00	5.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTACCACA.......................................................................	23	1	6.00	3.00	0.00	1.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCC........................................................................	22	1	6.00	6.00	0.00	0.00	0.00
...................................................................................................................................................GAGATTCTTCTATTCTACTTT.............................	21	1	5.00	1.00	0.00	2.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	5.00	5.00	0.00	0.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCAC........................................................................	23	1	5.00	4.00	0.00	1.00	0.00
..................................................................................................................................................CGAGATTCTTCTATTCTACTTT.............................	22	1	5.00	2.00	0.00	1.00	2.00
.......................................................................................................AGTAGGATAGCAGGCTTATCACA.......................................................................	23	1	5.00	3.00	0.00	0.00	2.00
..................................................................................................................................................TGAGGTTCTTCTATTCTACTTT.............................	22	1	5.00	2.00	0.00	0.00	3.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	5.00	2.00	1.00	0.00	2.00
.....................................................................................................................................................GATTCTTCTATTCTACTTT.............................	19	1	5.00	0.00	0.00	2.00	3.00
.......................................................................................................AGTAGAATAGCAGGCCTATCACA.......................................................................	23	1	5.00	4.00	0.00	0.00	1.00
..................................................................................................................................................TGATATTCTTCTATTCTACTTT.............................	22	1	4.00	0.00	0.00	1.00	3.00
.......................................................................................................AGTAGAATAGTAGGCTTATCACA.......................................................................	23	1	4.00	1.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCCGGCTTATCAC........................................................................	22	1	4.00	4.00	0.00	0.00	0.00
.......................................................................................................AGTGGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	2.00	0.00	1.00	1.00
..................................................................................................................................................TGAGATTCTTCTCTTCTACTTT.............................	22	1	4.00	4.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	4.00	2.00	0.00	0.00	2.00
..................................................................................................................................................TGAGAGTCTTCTATTCTACTTT.............................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	4.00	0.00	0.00	2.00	2.00
..................................................................................................................................................TGAGCTTCTTCTATTCTACTTT.............................	22	1	4.00	2.00	0.00	0.00	2.00
......................................................................................................CAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	4.00	3.00	0.00	0.00	1.00
.......................................................................................................ATTAGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................AGTAGAATGGCAGGCTTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGACTTATCACA.......................................................................	23	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................................................................ATCTGCTGTGAGATTCTTCTATT....................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTGATCACA.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCC.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAxGCTTATCACA.......................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCGTATCACA.......................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.......................................................................................................AGTAGCATAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00
...........................................................................................................................................TCTGCTGTGAGATTCTTCTATTCTACTTT.............................	29	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAAA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................CGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00
.......................................................................................................AGAAGAATAGCAGGCTTGTCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTTCTTT.............................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................TAAGATTCTTCTATTCTACTTT.............................	22	1	3.00	2.00	0.00	0.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	3.00	0.00	0.00	2.00	1.00

droSec1

G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCAATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCA-------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	6679.00	1772.00	4692.00	215.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	1916.00	362.00	1485.00	69.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	919.00	340.00	482.00	97.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	591.00	155.00	426.00	10.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	267.00	196.00	59.00	12.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	174.00	78.00	76.00	20.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	135.00	16.00	118.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	84.00	52.00	27.00	5.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	48.00	20.00	23.00	5.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	29.00	1.00	25.00	3.00
..............................................................................................................................TGTTCAATTCA-ATCTGCTG...................................................	19	1	27.00	0.00	27.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTACCACA.......................................................................	23	1	24.00	15.00	9.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	23.00	7.00	16.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCACATG.....................................................................	23	1	20.00	3.00	17.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCA.........................................................................	19	1	18.00	2.00	14.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTAACACA.......................................................................	23	1	16.00	14.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	15.00	5.00	9.00	1.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	14.00	5.00	9.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTTTACTTT.............................	22	1	12.00	0.00	12.00	0.00
.......................................................................................................AGTAGAATAGCGGGCTTATCACA.......................................................................	23	1	11.00	3.00	8.00	0.00
.......................................................................................................AGTAGAGTAGCAGGCTTATCACA.......................................................................	23	1	11.00	1.00	10.00	0.00
.......................................................................................................AGTAGAATAGCAGGTTTATCACA.......................................................................	23	1	11.00	1.00	10.00	0.00
.......................................................................................................AGTAGAATAGCAGGCCTATCACA.......................................................................	23	1	11.00	4.00	7.00	0.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	10.00	2.00	8.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	10.00	4.00	6.00	0.00
.......................................................................................................AGTAxAATAGCAGGCTTATCACA.......................................................................	22	1	10.00	0.00	9.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	10.00	2.00	8.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTATTTT.............................	22	1	9.00	3.00	6.00	0.00
.......................................................................................................AGTTGAATAGCAGGCTTATCACA.......................................................................	23	1	9.00	0.00	9.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTA.................................	18	1	8.00	0.00	8.00	0.00
.......................................................................................................AGTAGAATAGTAGGCTTATCACA.......................................................................	23	1	8.00	1.00	7.00	0.00
..................................................................................................................................................TGAGATTCTTTTATTCTACTTT.............................	22	1	8.00	0.00	8.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	8.00	2.00	6.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	8.00	7.00	1.00	0.00
.......................................................................................................GGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	8.00	1.00	7.00	0.00
.......................................................................................................AGTAGGATAGCAGGCTTATCACA.......................................................................	23	1	8.00	2.00	6.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAAA.......................................................................	23	1	8.00	1.00	7.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAT......................................................................	24	1	8.00	6.00	1.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	8.00	1.00	4.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATTACA.......................................................................	23	1	7.00	1.00	6.00	0.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	7.00	4.00	3.00	0.00
.......................................................................................................ACTAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	1.00	5.00	1.00
.......................................................................................................AATAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	2.00	4.00	1.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	7.00	0.00	7.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTA............................................................................	18	1	7.00	1.00	5.00	1.00
.........................................................................................................TAGAATAGCAGGCTTATCACAT......................................................................	22	1	7.00	4.00	3.00	0.00
......................................................................................................CAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	7.00	0.00	7.00	0.00
.......................................................................................................ATTAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	3.00	4.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	7.00	2.00	5.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTGGTC.........................	26	1	6.00	0.00	6.00	0.00
.......................................................................................................AGTAGAATGGCAGGCTTATCACA.......................................................................	23	1	6.00	2.00	4.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTCATCACA.......................................................................	23	1	6.00	0.00	6.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTAATTT.............................	22	1	6.00	6.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTTCTTT.............................	22	1	6.00	0.00	6.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATC..........................................................................	18	1	6.00	0.00	5.00	1.00
.......................................................................................................AGTATAATAGCAGGCTTATCACA.......................................................................	23	1	5.00	0.00	4.00	1.00
.......................................................................................................AGTAGAATAGCAAGCTTATCACA.......................................................................	23	1	5.00	3.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	5.00	1.00	4.00	0.00
.......................................................................................................AGTGGAATAGCAGGCTTATCACA.......................................................................	23	1	5.00	1.00	4.00	0.00
........................................................................................................GTAGAATAGCAGGCTTATCACA.......................................................................	22	1	5.00	0.00	5.00	0.00
..........................................................................................................AGAATAGCAGGCTTATCACA.......................................................................	20	1	5.00	1.00	4.00	0.00
................................................................................................................................................TGTGAGATTCTTCTATTCTACT...............................	22	1	5.00	1.00	4.00	0.00
.......................................................................................................CGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	5.00	0.00	5.00	0.00
..................................................................................................................................................TGAGATTCCTCTATTCTACTTT.............................	22	1	5.00	1.00	4.00	0.00
.......................................................................................................AGTAGAATAGCATGCTTATCACA.......................................................................	23	1	5.00	1.00	3.00	1.00
.......................................................................................................AGTAGAATAGCAGTCTTATCACA.......................................................................	23	1	5.00	1.00	4.00	0.00
.......................................................................................................AGTAGAATAGCAGCCTTATCACA.......................................................................	23	1	5.00	1.00	4.00	0.00
.......................................................................................................AGTAGAACAGCAGGCTTATCACA.......................................................................	23	1	5.00	1.00	3.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATT..........................................................................	20	1	4.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCATA.......................................................................	23	1	4.00	0.00	4.00	0.00
..................................................................................................................................................TGAGATTCTCCTATTCTACTTT.............................	22	1	4.00	0.00	4.00	0.00
.......................................................................................................TGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	0.00	4.00	0.00
.......................................................................................................AGTAGAATAACAGGCTTATCACA.......................................................................	23	1	4.00	0.00	4.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCAC........................................................................	23	1	4.00	0.00	4.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCTCA.......................................................................	21	1	4.00	3.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCATATCACA.......................................................................	23	1	4.00	0.00	4.00	0.00
..................................................................................................................................................TGAGCTTCTTCTATTCTACTTT.............................	22	1	4.00	2.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAGCACA.......................................................................	23	1	4.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	4.00	1.00	3.00	0.00
.......................................................................................................AGTAAAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	3.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCGCA.......................................................................	21	1	4.00	3.00	1.00	0.00
.......................................................................................................AGTAGTATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	3.00	0.00
.......................................................................................................AGTCGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	3.00	0.00
..................................................................................................................................................TGATATTCTTCTATTCTACTTT.............................	22	1	3.00	2.00	1.00	0.00
...................................................................................................................................................GAGATTCTTCTATTCTACTTT.............................	21	1	3.00	2.00	1.00	0.00
.......................................................................................................AGTAGAATxxCAGGCTTATCACA.......................................................................	21	1	3.00	0.00	3.00	0.00
..................................................................................................................................................TGAGATTCTTCCATTCTACTTT.............................	22	1	3.00	1.00	2.00	0.00
..................................................................................................................................................TGAGATTCTTCTGTTCTACTTT.............................	22	1	3.00	0.00	3.00	0.00
.......................................................................................................AGTAGAATAGCAxGCTTATCACA.......................................................................	22	1	3.00	2.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCT.........................................................................	21	1	3.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGTTTATCAC........................................................................	22	1	3.00	0.00	3.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCCACTTT.............................	22	1	3.00	1.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTCACA.........................................................................	21	1	3.00	0.00	3.00	0.00
.......................................................................................................AGTACAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	1.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTGTCACA.......................................................................	23	1	3.00	1.00	2.00	0.00
..................................................................................................................................................TGAGATTCTTCTAATCTACTTT.............................	22	1	3.00	0.00	3.00	0.00
.......................................................................................................AGTGGAATAGCAGGCTTATCAC........................................................................	22	1	3.00	0.00	2.00	1.00
.........................................................................................................TAGAATAGTAGGCTTATCACA.......................................................................	21	1	3.00	0.00	3.00	0.00
..................................................................................................................................................TGGGATTCTTCTATTCTACTTT.............................	22	1	3.00	0.00	3.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATAACA.......................................................................	23	1	3.00	1.00	1.00	1.00

droYak2

G-------------------GATTT----TCCA----------------C----------------------------------GATCGGCGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTTAACTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTAACATCGAACCC--	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	2234.00	1614.00	16.00	476.00	34.00	94.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	920.00	759.00	14.00	107.00	22.00	18.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	408.00	313.00	2.00	80.00	10.00	3.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	235.00	148.00	0.00	85.00	1.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	94.00	19.00	4.00	70.00	1.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	60.00	58.00	0.00	2.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	54.00	25.00	3.00	21.00	2.00	3.00
..............................................................................................................................TGTTTAACTCA-ATCTGCTG...................................................	19	1	35.00	34.00	0.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	27.00	11.00	1.00	13.00	2.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	22.00	6.00	0.00	13.00	1.00	2.00
.........................................................................................................TAGAATAGCAGGCTTATCACATG.....................................................................	23	1	16.00	10.00	0.00	3.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	12.00	12.00	0.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	10.00	0.00	0.00	10.00	0.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCAC........................................................................	23	1	10.00	7.00	0.00	3.00	0.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	9.00	8.00	0.00	0.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	9.00	9.00	0.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	7.00	7.00	0.00	0.00	0.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	7.00	5.00	0.00	2.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	7.00	4.00	0.00	1.00	1.00	1.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	2.00	0.00	4.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	7.00	6.00	0.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCGGGCTTATCACA.......................................................................	23	1	6.00	4.00	0.00	2.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	6.00	5.00	0.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	6.00	3.00	0.00	3.00	0.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCACAT......................................................................	22	1	6.00	1.00	0.00	5.00	0.00	0.00
.......................................................................................................AGTAGAATAGCCGGCTTATCAC........................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	4.00	1.00	0.00	3.00	0.00	0.00
..........................................................................................................AGAATAGCAGGCTTATCACA.......................................................................	20	1	4.00	1.00	0.00	2.00	0.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	4.00	3.00	0.00	0.00	1.00	0.00
.......................................................................................................AGTAGAATAGCTGGCTTATCACA.......................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
.......................................................................................................AGTAGGATAGCAGGCTTATCACA.......................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	4.00	1.00	0.00	0.00	1.00	2.00
.........................................................................................................TAGAATAGCAGGCTTATCACATGT....................................................................	24	1	4.00	2.00	0.00	2.00	0.00	0.00
.......................................................................................................AGTAGAATGGCAGGCTTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.......................................................................................................AATAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTCCTTT.............................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................................................................................CTGAGATTCTTCTATTCTACTTT.............................	23	1	3.00	2.00	0.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCATATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATTGCAGGCTTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTAGCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCA.........................................................................	19	1	3.00	2.00	0.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTACCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	3.00	1.00	0.00	2.00	0.00	0.00

droEre2

G-------------------GATTG----TCTA----------------C----------------------------------GATCGGCGTGGCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCTGCTGTGAGATTCTTCTATTCTACTTTCGACAA-CACCCGTTTACATCAAACCCGA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	2803.00	998.00	13.00	511.00	1281.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	783.00	334.00	67.00	115.00	267.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	715.00	248.00	6.00	75.00	386.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	102.00	60.00	1.00	6.00	35.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	96.00	9.00	5.00	10.00	72.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	90.00	17.00	3.00	12.00	58.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	83.00	29.00	6.00	4.00	44.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	43.00	9.00	2.00	1.00	31.00
..............................................................................................................................TGTTCCATTCA-ATCTGCTG...................................................	19	1	34.00	31.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	33.00	7.00	1.00	5.00	20.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	33.00	24.00	0.00	3.00	6.00
.......................................................................................................AGTAGAATAGCATGCTTATCACA.......................................................................	23	1	21.00	8.00	0.00	2.00	11.00
.......................................................................................................AGTAGAATAGCAGTCTTATCACA.......................................................................	23	1	19.00	7.00	0.00	3.00	9.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	18.00	11.00	0.00	6.00	1.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	17.00	8.00	0.00	1.00	8.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	17.00	11.00	0.00	4.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	16.00	3.00	0.00	3.00	10.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	16.00	0.00	0.00	0.00	16.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	16.00	13.00	0.00	1.00	2.00
.......................................................................................................ATTAGAATAGCAGGCTTATCACA.......................................................................	23	1	15.00	5.00	0.00	1.00	9.00
.......................................................................................................AGTATAATAGCAGGCTTATCACA.......................................................................	23	1	10.00	4.00	0.00	0.00	6.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	10.00	4.00	1.00	2.00	3.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	10.00	2.00	0.00	3.00	5.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	9.00	3.00	1.00	0.00	5.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	9.00	2.00	0.00	3.00	4.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	9.00	0.00	0.00	1.00	8.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	8.00	4.00	0.00	4.00	0.00
.......................................................................................................AGTAGAATAACAGGCTTATCACA.......................................................................	23	1	8.00	5.00	0.00	2.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	8.00	1.00	0.00	1.00	6.00
..................................................................................................................................................TGAGATTATTCTATTCTACTTT.............................	22	1	7.00	0.00	0.00	0.00	7.00
.......................................................................................................AGTAGAATAGCAAGCTTATCACA.......................................................................	23	1	6.00	4.00	0.00	1.00	1.00
.........................................................................................................TAGAATAGCAGGCTTATCACATG.....................................................................	23	1	6.00	2.00	0.00	0.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTATAACA.......................................................................	23	1	6.00	1.00	0.00	1.00	4.00
.......................................................................................................AGTAGAATAGCAGCCTTATCACA.......................................................................	23	1	6.00	1.00	0.00	3.00	2.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	6.00	1.00	0.00	2.00	3.00
..................................................................................................................................................TGAGATTCTTCTATTCTA.................................	18	1	5.00	0.00	0.00	0.00	5.00
............................................................................................................AATAGCAGGCTTATCACA.......................................................................	18	1	5.00	0.00	0.00	1.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTGTCACA.......................................................................	23	1	5.00	3.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAAA.......................................................................	23	1	5.00	0.00	0.00	1.00	4.00
..................................................................................................................................................TTAGATTCTTCTATTCTACTTT.............................	22	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................AGTAGAATAGCAGGCCTATCACA.......................................................................	23	1	5.00	5.00	0.00	0.00	0.00
..................................................................................................................................................TGATATTCTTCTATTCTACTTT.............................	22	1	4.00	3.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGTCTTATCAC........................................................................	22	1	4.00	2.00	0.00	0.00	2.00
.......................................................................................................AATAGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	2.00	1.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTCATCACA.......................................................................	23	1	4.00	0.00	0.00	1.00	3.00
.......................................................................................................GGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	0.00	2.00	1.00
..................................................................................................................................................TGAGATTCTTATATTCTACTTT.............................	22	1	4.00	4.00	0.00	0.00	0.00
.......................................................................................................AGTGGAATAGCAGGCTTATCAC........................................................................	22	1	4.00	2.00	0.00	1.00	1.00
.......................................................................................................AGTATAATAGCAGGCTTATCAC........................................................................	22	1	4.00	1.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTA............................................................................	18	1	4.00	1.00	0.00	2.00	1.00
.......................................................................................................AGTCGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	3.00	0.00	0.00	2.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATTACA.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAACAGGCTTATCAC........................................................................	22	1	3.00	2.00	0.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCATA.......................................................................	23	1	3.00	1.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGCAGGGTTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGCCTTATCAC........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................TGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	1.00	0.00	1.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCTCA.......................................................................	23	1	3.00	1.00	0.00	2.00	0.00
..........................................................................................................AGAATAGCAGGCTTATCACA.......................................................................	20	1	3.00	1.00	0.00	1.00	1.00
...........................................................................................................GAATAGCAGGCTTATCACA.......................................................................	19	1	3.00	0.00	0.00	1.00	2.00
.......................................................................................................AGTAGAATAGCAGGCGTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAGAAGAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	0.00	1.00	0.00
.......................................................................................................AGTAGAATCGCAGGCTTATCACA.......................................................................	23	1	3.00	1.00	0.00	1.00	1.00
.......................................................................................................AGTAGAATAGCAGGCATATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAGGATAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	0.00	1.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTATCAC........................................................................	22	1	3.00	1.00	0.00	1.00	1.00
..................................................................................................................................................TGAGCTTCTTCTATTCTACTTT.............................	22	1	3.00	2.00	0.00	0.00	1.00
.......................................................................................................GGTAGAATAGCAGGCTTATCAC........................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAC......................................................................	24	1	3.00	0.00	0.00	2.00	1.00
.......................................................................................................AGTAGAACAGCAGGCTTATCACA.......................................................................	23	1	3.00	1.00	1.00	1.00	0.00
.......................................................................................................AGTAGAATAGCACGCTTATCACA.......................................................................	23	1	3.00	1.00	0.00	1.00	1.00

droAna3

G-------------------AATAT----TCCA---------------AC----------------------------------GACCGGTGGGTTTTTAGCAAGTAGAATAGCAGGCTTATCACAGGTTCC-TTTA-ACCCACTGTGAGATTCTTCTATTCTACTTTCGAGAAACACCCGTAAACACCGATCTC--	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	1161.00	639.00	298.00	95.00	129.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	514.00	261.00	27.00	64.00	162.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	371.00	107.00	193.00	19.00	52.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	193.00	165.00	12.00	14.00	2.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	65.00	39.00	11.00	4.00	11.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	43.00	15.00	21.00	7.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	42.00	19.00	14.00	6.00	3.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	20.00	12.00	4.00	0.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	20.00	20.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	12.00	6.00	4.00	2.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	12.00	0.00	6.00	3.00	3.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	8.00	7.00	1.00	0.00	0.00
........................................................................................................GTAGAATAGCAGGCTTATCAC........................................................................	21	1	8.00	3.00	5.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	8.00	5.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCTC........................................................................	22	1	7.00	5.00	1.00	1.00	0.00
........................................................................................................GTAGAATAGCAGGCTTATCACA.......................................................................	22	1	6.00	3.00	2.00	1.00	0.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	6.00	3.00	0.00	2.00	1.00
.......................................................................................................AGTAGAATAGCATGCTTATCACA.......................................................................	23	1	6.00	4.00	1.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGTCTTATCACA.......................................................................	23	1	6.00	4.00	1.00	0.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	5.00	1.00	0.00	2.00	2.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	5.00	3.00	2.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	5.00	4.00	1.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTATACTTT.............................	22	1	4.00	1.00	0.00	3.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTA............................................................................	18	1	4.00	0.00	1.00	3.00	0.00
..........................................................................................................AGAATAGCAGGCTTATCACA.......................................................................	20	1	4.00	1.00	2.00	0.00	1.00
..................................................................................................................................................TGAGATTCTTCTACTCTACTTT.............................	22	1	4.00	2.00	0.00	0.00	2.00
.......................................................................................................AGTATAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	3.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCTCA.......................................................................	23	1	4.00	2.00	1.00	1.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	4.00	2.00	1.00	1.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCACAG......................................................................	22	1	4.00	1.00	2.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAAGCTTATCACA.......................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................................................................TGAGATTATTCTATTCTACTTT.............................	22	1	3.00	0.00	0.00	2.00	1.00
.......................................................................................................AGGAGAATAGCAGGCTTATCAC........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATGGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCT.........................................................................	21	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................ATTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCACGCTTATCACA.......................................................................	23	1	3.00	1.00	0.00	0.00	2.00
.........................................................................................................TAGAATAGCAGGCTTATCACAGG.....................................................................	23	1	3.00	1.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	3.00	2.00	1.00	0.00	0.00

dp4

G-------------------GATATGGCTAGCA----------------C----------------------------------GATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACAT---------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3527.00	1481.00	1926.00	59.00	61.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	1534.00	215.00	1099.00	203.00	17.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	560.00	119.00	434.00	6.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	346.00	280.00	40.00	20.00	6.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	99.00	67.00	28.00	3.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	98.00	27.00	45.00	24.00	2.00
..............................................................................................................................TGTTCCATTCA-ATCCGCTG...................................................	19	1	81.00	0.00	75.00	1.00	5.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	56.00	27.00	29.00	0.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	27.00	0.00	27.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	27.00	6.00	19.00	0.00	2.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	25.00	6.00	11.00	8.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	22.00	13.00	8.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	20.00	0.00	20.00	0.00	0.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	12.00	0.00	11.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTATACTTT.............................	22	1	11.00	0.00	9.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	10.00	1.00	9.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	10.00	3.00	7.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTGTCACA.......................................................................	23	1	9.00	0.00	9.00	0.00	0.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	8.00	0.00	6.00	2.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	8.00	0.00	8.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	8.00	4.00	3.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	8.00	2.00	6.00	0.00	0.00
...................................................................................................................................................GAGATTCTTCTATTCTACTTT.............................	21	1	7.00	0.00	6.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	7.00	3.00	4.00	0.00	0.00
..................................................................................................................................................TGAGTTTCTTCTATTCTACTTT.............................	22	1	7.00	0.00	7.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTCCTTT.............................	22	1	7.00	0.00	4.00	3.00	0.00
.......................................................................................................AGTAGAATAGCAGGCCTATCACA.......................................................................	23	1	7.00	3.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCTCA.......................................................................	23	1	7.00	1.00	6.00	0.00	0.00
.......................................................................................................AGTAGGATAGCAGGCTTATCACA.......................................................................	23	1	7.00	0.00	7.00	0.00	0.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	7.00	0.00	7.00	0.00	0.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	6.00	0.00	5.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTA............................	23	1	6.00	1.00	3.00	2.00	0.00
.......................................................................................................AGTAGAATAGCTGGCTTATCACA.......................................................................	23	1	6.00	1.00	5.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGACTTATCACA.......................................................................	23	1	6.00	1.00	5.00	0.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCACATG.....................................................................	23	1	6.00	2.00	4.00	0.00	0.00
.......................................................................................................AGGAGAATAGAAGGCTTATCACA.......................................................................	23	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTACCACA.......................................................................	23	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTATTCTATTCTACTTT.............................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................................................TGGGATTCTTCTATTCTACTTT.............................	22	1	5.00	1.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAAA.......................................................................	23	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTATATTCTACTTT.............................	22	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCATA.......................................................................	23	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTC............................	23	1	5.00	2.00	3.00	0.00	0.00
..................................................................................................................................................TGAGGTTCTTCTATTCTACTTT.............................	22	1	5.00	0.00	4.00	0.00	1.00
.......................................................................................................AGTAGAATGGCAGGCTTATCACA.......................................................................	23	1	5.00	2.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCT.........................................................................	21	1	5.00	3.00	0.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	5.00	1.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	5.00	2.00	2.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTTT...........................................................................	19	1	4.00	4.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAACAGGCTTATCACA.......................................................................	23	1	4.00	1.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAT........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................................................TGAGCTTCTTCTATTCTACTTT.............................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGTTTATCACA.......................................................................	23	1	4.00	1.00	2.00	1.00	0.00
.......................................................................................................AGTGGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCGTATCAC........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTGCTTT.............................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTTTTCTACTTT.............................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCC.......................................................................	23	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCATGCTTATCACA.......................................................................	23	1	4.00	1.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	3.00	0.00	2.00	0.00	1.00
.......................................................................................................AGTAGAATAGCGGGCTTATCAC........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGATTATCAC........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTCTTCTACTTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCGTATCACA.......................................................................	23	1	3.00	1.00	2.00	0.00	0.00
..................................................................................................................................................TGGGATTCTTCTATTCTTCTTT.............................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACCTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................GGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTCATCACA.......................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTA............................................................................	18	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGTAGGCTTATCACA.......................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATTACA.......................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTATCAC........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAGCACA.......................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAA........................................................................	22	1	3.00	2.00	1.00	0.00	0.00
..........................................................................................................AGAATAGCAGGCTTATCACA.......................................................................	20	1	3.00	2.00	1.00	0.00	0.00
.......................................................................................................AATAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAGA.......................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TGAGAGTCTTCTATTCTACTTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TGTGATTCTTCTATTCTACTTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTAATTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATAACA.......................................................................	23	1	3.00	0.00	2.00	1.00	0.00

droPer1

------------------------------------------------------------------------------------GATCGGTGTGTATTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCATTCA-ATCCGCTGTGAGATTCTTCTATTCTACTTTCGACAAACACCCGTTGACAT---------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	1335.00	274.00	287.00	12.00	6.00	756.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	502.00	33.00	340.00	7.00	1.00	121.00
..............................................................................................................................TGTTCCATTCA-ATCCGCTG...................................................	19	1	365.00	0.00	18.00	0.00	0.00	347.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	129.00	20.00	97.00	0.00	0.00	12.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	114.00	88.00	11.00	2.00	2.00	11.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	58.00	36.00	13.00	0.00	1.00	8.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	31.00	0.00	4.00	0.00	1.00	26.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	28.00	2.00	16.00	1.00	0.00	9.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	21.00	11.00	8.00	0.00	0.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	20.00	0.00	1.00	0.00	0.00	19.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	13.00	4.00	4.00	1.00	2.00	2.00
........................................................................................................GTAGAATAGCAGGCTTATCACA.......................................................................	22	1	11.00	0.00	1.00	0.00	0.00	10.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	9.00	3.00	5.00	0.00	0.00	1.00
...............................................................................................................................GTTCCATTCA-ATCCGCTG...................................................	18	1	9.00	0.00	0.00	0.00	0.00	9.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	9.00	0.00	9.00	0.00	0.00	0.00
..........................................................................................................................................ATCCGCTGTGAGATTCTTCT.......................................	20	1	8.00	0.00	1.00	0.00	0.00	7.00
......................................................................................................................................................ATTCTTCTATTCTACTTT.............................	18	1	7.00	0.00	0.00	0.00	0.00	7.00
.....................................................................................................................................................GATTCTTCTATTCTACTTT.............................	19	1	6.00	0.00	1.00	0.00	0.00	5.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	5.00	0.00	3.00	0.00	0.00	2.00
..........................................................................................................AGAATAGCAGGCTTATCACA.......................................................................	20	1	5.00	0.00	1.00	0.00	0.00	4.00
.............................................................................................................................................CGCTGTGAGATTCTTCTATT....................................	20	1	5.00	0.00	0.00	0.00	0.00	5.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
...................................................................................................................................................GAGATTCTTCTATTCTACTTT.............................	21	1	4.00	1.00	0.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	4.00	0.00	0.00	0.00	0.00	4.00
.......................................................................................................AGTAGAATAGCAAGCTTATCACA.......................................................................	23	1	4.00	0.00	1.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGTCTTATCACA.......................................................................	23	1	3.00	0.00	1.00	0.00	0.00	2.00
..............................................................................................................................TGTTCCATTCA-ATCCGCGG...................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAT........................................................................	22	1	3.00	1.00	2.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	0.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCC........................................................................	22	1	3.00	0.00	2.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATTACA.......................................................................	23	1	3.00	0.00	2.00	0.00	0.00	1.00
............................................................................................................................................CCGCTGTGAGATTCTTCTATTCTACTTT.............................	28	1	3.00	0.00	0.00	0.00	0.00	3.00
...........................................................................................................GAATAGCAGGCTTATCACA.......................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
..................................................................................................................................................TGAGATTCTTCTGTTCTACTTT.............................	22	1	3.00	0.00	0.00	0.00	0.00	3.00

droWil1

T-------------------GAGTT----TTGA----------------C----------------------------------TAACGGTGTGTCTTTGGCAAGTAGAATAGCAGGCTTATCACATGTTCCCTTTACAACCGGTGTGAGATTCTTCTATTCTACTTTCGAAAAGCACCCGATAACAACAAA-----	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	19307.00	290.00	18556.00	190.00	271.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	4348.00	226.00	4038.00	35.00	49.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	1563.00	14.00	1498.00	50.00	1.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	410.00	63.00	334.00	13.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	262.00	40.00	206.00	11.00	5.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	243.00	11.00	226.00	5.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	174.00	19.00	150.00	3.00	2.00
.........................................................................................................TAGAATAGCAGGCTTATCACATG.....................................................................	23	1	64.00	3.00	61.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	55.00	14.00	33.00	6.00	2.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	46.00	1.00	45.00	0.00	0.00
.......................................................................................................ATTAGAATAGCAGGCTTATCACA.......................................................................	23	1	44.00	1.00	43.00	0.00	0.00
.......................................................................................................AGTATAATAGCAGGCTTATCACA.......................................................................	23	1	41.00	1.00	39.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGTCTTATCACA.......................................................................	23	1	37.00	0.00	37.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	36.00	14.00	21.00	0.00	1.00
.......................................................................................................AGTAGAATAGCATGCTTATCACA.......................................................................	23	1	30.00	0.00	30.00	0.00	0.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	29.00	0.00	29.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	28.00	0.00	28.00	0.00	0.00
.......................................................................................................AGTAxAATAGCAGGCTTATCACA.......................................................................	22	1	27.00	0.00	27.00	0.00	0.00
.......................................................................................................AGTAGAATAGCGGGCTTATCACA.......................................................................	23	1	26.00	0.00	25.00	1.00	0.00
........................................................................................................GTAGAATAGCAGGCTTATCACA.......................................................................	22	1	23.00	0.00	21.00	0.00	2.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	22.00	1.00	21.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	22.00	0.00	21.00	1.00	0.00
.......................................................................................................AGTAAAATAGCAGGCTTATCACA.......................................................................	23	1	22.00	0.00	22.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	21.00	0.00	10.00	0.00	11.00
.......................................................................................................AGTAGGATAGCAGGCTTATCACA.......................................................................	23	1	21.00	1.00	20.00	0.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	21.00	3.00	15.00	3.00	0.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	20.00	0.00	19.00	1.00	0.00
.......................................................................................................ACTAGAATAGCAGGCTTATCACA.......................................................................	23	1	20.00	1.00	18.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTACCACA.......................................................................	23	1	20.00	0.00	19.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	20.00	0.00	20.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	19.00	2.00	15.00	0.00	2.00
.......................................................................................................AGTGGAATAGCAGGCTTATCACA.......................................................................	23	1	19.00	1.00	18.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTCATCACA.......................................................................	23	1	18.00	0.00	18.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	18.00	0.00	17.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	18.00	0.00	16.00	0.00	2.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	17.00	0.00	17.00	0.00	0.00
.......................................................................................................AGTAGAGTAGCAGGCTTATCACA.......................................................................	23	1	17.00	0.00	17.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTA.................................	18	1	16.00	0.00	15.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	16.00	1.00	13.00	1.00	1.00
.......................................................................................................AATAGAATAGCAGGCTTATCACA.......................................................................	23	1	16.00	0.00	15.00	1.00	0.00
.......................................................................................................AGTAGACTAGCAGGCTTATCACA.......................................................................	23	1	16.00	0.00	15.00	0.00	1.00
.......................................................................................................AGTAGAATGGCAGGCTTATCACA.......................................................................	23	1	14.00	1.00	13.00	0.00	0.00
.......................................................................................................AGTACAATAGCAGGCTTATCACA.......................................................................	23	1	14.00	0.00	14.00	0.00	0.00
.......................................................................................................AGTAGAACAGCAGGCTTATCACA.......................................................................	23	1	14.00	0.00	14.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCATA.......................................................................	23	1	13.00	0.00	13.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGACTTATCACA.......................................................................	23	1	13.00	1.00	12.00	0.00	0.00
..........................................................................................................AGAATAGCAGGCTTATCACA.......................................................................	20	1	13.00	1.00	12.00	0.00	0.00
.......................................................................................................GGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	13.00	1.00	12.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATAACA.......................................................................	23	1	13.00	0.00	13.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCCTATCACA.......................................................................	23	1	13.00	0.00	13.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTA............................................................................	18	1	11.00	0.00	10.00	1.00	0.00
..................................................................................................................................................TGAGCTTCTTCTATTCTACTTT.............................	22	1	11.00	0.00	11.00	0.00	0.00
.......................................................................................................AGTAGAATxxCAGGCTTATCACA.......................................................................	21	1	10.00	0.00	10.00	0.00	0.00
.......................................................................................................AGTAGAATAACAGGCTTATCACA.......................................................................	23	1	10.00	0.00	9.00	1.00	0.00
.......................................................................................................AGTAGAATCGCAGGCTTATCACA.......................................................................	23	1	10.00	0.00	10.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAAA.......................................................................	23	1	10.00	0.00	9.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	9.00	0.00	9.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATTACA.......................................................................	23	1	9.00	0.00	9.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATCCTACTTT.............................	22	1	9.00	0.00	9.00	0.00	0.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	8.00	1.00	7.00	0.00	0.00
..................................................................................................................................................TTAGATTCTTCTATTCTACTTT.............................	22	1	8.00	0.00	8.00	0.00	0.00
...................................................................................................................................................GAGATTCTTCTATTCTACTTT.............................	21	1	8.00	1.00	7.00	0.00	0.00
..................................................................................................................................................TGATATTCTTCTATTCTACTTT.............................	22	1	8.00	1.00	7.00	0.00	0.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	8.00	0.00	8.00	0.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCACAT......................................................................	22	1	8.00	7.00	1.00	0.00	0.00
......................................................................................................CAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	8.00	0.00	7.00	1.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCAC........................................................................	23	1	7.00	0.00	5.00	0.00	2.00
..................................................................................................................................................TGAGATTCTTCCATTCTACTTT.............................	22	1	7.00	1.00	6.00	0.00	0.00
.......................................................................................................AGTCGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	1.00	5.00	1.00	0.00
.......................................................................................................AGTAGAATAGTAGGCTTATCACA.......................................................................	23	1	6.00	0.00	5.00	1.00	0.00
.................................................................................................................................................CTGAGATTCTTCTATTCTACTTT.............................	23	1	6.00	0.00	6.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAAGCTTATCACA.......................................................................	23	1	6.00	0.00	6.00	0.00	0.00
.......................................................................................................TGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	6.00	0.00	6.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	6.00	1.00	5.00	0.00	0.00
..................................................................................................................................................CGAGATTCTTCTATTCTACTTT.............................	22	1	6.00	1.00	5.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGCCTTATCACA.......................................................................	23	1	6.00	0.00	6.00	0.00	0.00
..................................................................................................................................................TGAGGTTCTTCTATTCTACTTT.............................	22	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................ATTAGAATAGCAGGCTTATCAC........................................................................	22	1	5.00	1.00	3.00	1.00	0.00
..............................................................................................................................TGTTCCCTTTACAACCGGTG...................................................	20	1	5.00	0.00	5.00	0.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	5.00	0.00	2.00	0.00	3.00
..................................................................................................................................................TGAGATTCTTCTATTCTTCTTT.............................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................................................TGAGATTATTCTATTCTACTTT.............................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................................................TGAGATTCCTCTATTCTACTTT.............................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTA............................	23	1	5.00	2.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCACGCTTATCACA.......................................................................	23	1	5.00	0.00	5.00	0.00	0.00
.......................................................................................................AGCAGAATAGCAGGCTTATCAC........................................................................	22	1	5.00	1.00	3.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACCTT.............................	22	1	4.00	0.00	4.00	0.00	0.00
...........................................................................................................GAATAGCAGGCTTATCACA.......................................................................	19	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCCACTTT.............................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTGTCACA.......................................................................	23	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTATATTCTACTTT.............................	22	1	4.00	0.00	4.00	0.00	0.00
.......................................................................................................CGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	2.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTC............................	23	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTGCTTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAACAGGCTTATCAC........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTCT.............................	22	1	3.00	1.00	2.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGTCTTATCAC........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTAGTTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TCAGATTCTTCTATTCTACTTT.............................	22	1	3.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGCATAGCAGGCTTATCACA.......................................................................	23	1	3.00	0.00	2.00	1.00	0.00
.........................................................................................................TAGAATAGAAGGCTTATCACA.......................................................................	21	1	3.00	1.00	2.00	0.00	0.00

droVir3

A-------------------AAT-------GCACAGTAGAAGTTTTTCCTTTGTGTT---TTTTTAATGTTCTCTATATATTTTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACAATTCA-ACCTAGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTC--------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	2931.00	1295.00	8.00	511.00	1102.00	15.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	872.00	633.00	14.00	115.00	107.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	351.00	308.00	3.00	10.00	30.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	230.00	113.00	4.00	75.00	37.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	156.00	135.00	3.00	4.00	14.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	61.00	44.00	0.00	12.00	5.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	36.00	30.00	0.00	6.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	32.00	1.00	0.00	1.00	30.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	32.00	27.00	0.00	1.00	4.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	31.00	25.00	0.00	3.00	3.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	21.00	6.00	0.00	1.00	14.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	13.00	12.00	0.00	0.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	12.00	10.00	0.00	2.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	12.00	6.00	0.00	5.00	1.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCAC........................................................................	23	1	12.00	6.00	0.00	2.00	4.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCT.........................................................................	21	1	11.00	11.00	0.00	0.00	0.00	0.00
......................................................................................................AAGTAGAATAGCAGGCTTATCA.........................................................................	22	1	10.00	7.00	0.00	1.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	9.00	2.00	0.00	4.00	2.00	1.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	9.00	2.00	0.00	6.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAT......................................................................	24	1	8.00	6.00	0.00	0.00	2.00	0.00
.......................................................................................................AGTAGAATCGCAGGCTTATCACA.......................................................................	23	1	7.00	1.00	0.00	1.00	5.00	0.00
.......................................................................................................ATTAGAATAGCAGGCTTATCACA.......................................................................	23	1	7.00	5.00	0.00	1.00	1.00	0.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	5.00	1.00	0.00	2.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGCCTTATCACA.......................................................................	23	1	5.00	1.00	0.00	3.00	1.00	0.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	5.00	0.00	0.00	1.00	4.00	0.00
.......................................................................................................GGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	5.00	0.00	0.00	2.00	3.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	5.00	2.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACTT......................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	4.00	0.00	0.00	2.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAT........................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
........................................................................................................GTAGAATAGCAGGCTTATCACA.......................................................................	22	1	4.00	2.00	0.00	0.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGTCTTATCACA.......................................................................	23	1	4.00	1.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAAA.......................................................................	23	1	4.00	2.00	1.00	1.00	0.00	0.00
.......................................................................................................AGTAGAGTAGCAGGCTTATCACA.......................................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATAACA.......................................................................	23	1	4.00	2.00	0.00	1.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCCTATCACA.......................................................................	23	1	3.00	0.00	0.00	0.00	3.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	3.00	2.00	0.00	0.00	1.00	0.00
.......................................................................................................AGTAGAATAGCGGGCTTATCACA.......................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATCTCA.......................................................................	23	1	3.00	0.00	0.00	2.00	1.00	0.00
......................................................................................................CAGTAGAATAGCAGGCTTATCACA.......................................................................	24	1	3.00	2.00	0.00	1.00	0.00	0.00
.......................................................................................................AGTAGAATAACAGGCTTATCACA.......................................................................	23	1	3.00	1.00	0.00	2.00	0.00	0.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTGTTCTACTTT.............................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTA............................................................................	18	1	3.00	0.00	0.00	2.00	1.00	0.00
.....................................................................................................CAAGTAGAATAGCAGGCTTATCA.........................................................................	23	1	3.00	1.00	0.00	0.00	2.00	0.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
.......................................................................................................AGTAGAATAGCAAGCTTATCACA.......................................................................	23	1	3.00	1.00	0.00	1.00	1.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTC.............................	22	1	3.00	0.00	1.00	0.00	2.00	0.00
.......................................................................................................AGTAGAATAGCAGGCTTATT..........................................................................	20	1	3.00	2.00	0.00	0.00	1.00	0.00

droMoj3

GCAAAATGTGTTTTCCCTGTGATTC----T-------------------C----------------------------------AGTCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTACCATTTG-ACCGAGTGTGAGATTCTTCTATTCTACTTTCGACAAGCACCAGTCAGCGTC--------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3547.00	2404.00	24.00	16.00	1103.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	894.00	382.00	9.00	8.00	495.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	345.00	171.00	1.00	3.00	170.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	252.00	220.00	5.00	3.00	24.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	99.00	73.00	1.00	1.00	24.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	60.00	51.00	3.00	0.00	6.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	41.00	33.00	2.00	0.00	6.00
.........................................................................................................TAGAATAGCAGGCTTATCACA.......................................................................	21	1	37.00	13.00	0.00	0.00	24.00
..............................................................................................................................TGTACCATTTG-ACCGAGTG...................................................	19	1	35.00	9.00	0.00	0.00	26.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	14.00	14.00	0.00	0.00	0.00
.......................................................................................................AGGAGAATAGCAGGCTTATCACA.......................................................................	23	1	11.00	0.00	0.00	0.00	11.00
.......................................................................................................AGTAGAATAGCAGGCTTAT...........................................................................	19	1	11.00	10.00	1.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	10.00	6.00	0.00	0.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	10.00	1.00	0.00	1.00	8.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	10.00	1.00	0.00	0.00	9.00
.......................................................................................................AGTAGAATAGCAGGCTTGTCACA.......................................................................	23	1	7.00	1.00	0.00	0.00	6.00
.........................................................................................................TAGAATAGCAGGCTTATCACATG.....................................................................	23	1	6.00	2.00	0.00	0.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTATCT.........................................................................	21	1	6.00	6.00	0.00	0.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCAC........................................................................	20	1	6.00	0.00	0.00	0.00	6.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	5.00	1.00	1.00	1.00	2.00
.......................................................................................................AGTAGAATAGCAGGCCTATCACA.......................................................................	23	1	5.00	5.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGAAGGCTTATCACA.......................................................................	23	1	5.00	1.00	0.00	1.00	3.00
........................................................................................................GTAGAATAGCAGGCTTATCACA.......................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATAGCCGGCTTATCACA.......................................................................	23	1	5.00	0.00	1.00	1.00	3.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.......................................................................................................AGTAGAATAACAGGCTTATCACA.......................................................................	23	1	4.00	1.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAA......................................................................	24	1	4.00	3.00	0.00	0.00	1.00
.......................................................................................................AGTAGGATAGCAGGCTTATCACA.......................................................................	23	1	4.00	1.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................AGTATAATAGCAGGCTTATCACA.......................................................................	23	1	4.00	3.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATATCAGGCTTATCACA.......................................................................	23	1	4.00	3.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGTCTTATCACA.......................................................................	23	1	4.00	2.00	0.00	0.00	2.00
.......................................................................................................AGTAGAACAGCAGGCTTATCACA.......................................................................	23	1	4.00	0.00	0.00	0.00	4.00
.......................................................................................................AGTAGAGTAGCAGGCTTATCACA.......................................................................	23	1	4.00	3.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCGTATCACA.......................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAA........................................................................	22	1	3.00	1.00	1.00	0.00	1.00
.......................................................................................................AGGAGAATAGCAGGATTATCACA.......................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.......................................................................................................AGTAGAATAGCAGGCTTATCATA.......................................................................	23	1	3.00	1.00	1.00	0.00	1.00
..................................................................................................................................................TGAGATTCTTCTGTTCTACTTT.............................	22	1	3.00	1.00	0.00	0.00	2.00
.......................................................................................................ATTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAAAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTA............................................................................	18	1	3.00	2.00	0.00	1.00	0.00
.........................................................................................................TAGAATAGCAGGCTTATCA.........................................................................	19	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................................................TGAGATTCTTCTATTCTA.................................	18	1	3.00	3.00	0.00	0.00	0.00
.......................................................................................................AGTAGAATACCAGGCTTATCACA.......................................................................	23	1	3.00	2.00	0.00	0.00	1.00
.......................................................................................................TGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................................................TGAGTTTCTTCTATTCTACTTT.............................	22	1	3.00	0.00	0.00	0.00	3.00

droGri2

A-------------------TATGT----TTCC---------------ACGTGTGTGCAGGTTTTATGGTTTTTGTTTTACTCTGATCGGTGTGGAT-TGGCAAGTAGAATAGCAGGCTTATCACATGTAACATTCG-ACATGGTGTGAGATTCTTCTATTCTACTTTCGACAAACACCAGCTAGCGTCACA-----	Size	Hit Count	Total Norm	V109 Male body
.......................................................................................................AGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	346.00	346.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTT.............................	22	1	86.00	86.00
.......................................................................................................AGTAGAATAGCAGGCTTATCA.........................................................................	21	1	21.00	21.00
.......................................................................................................AGTAGAATAGCAGGCTTATCAC........................................................................	22	1	10.00	10.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTT..............................	21	1	9.00	9.00
..................................................................................................................................................TGAGATTCTTCTATTCTACTTTT............................	23	1	6.00	6.00
.......................................................................................................AGTAGAATAGCAGGCTTCTCACA.......................................................................	23	1	5.00	5.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACC.......................................................................	23	1	4.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTTTCACA.......................................................................	23	1	4.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACT.......................................................................	23	1	4.00	4.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACG.......................................................................	23	1	3.00	3.00
.......................................................................................................AGTAGAATTGCAGGCTTATCACA.......................................................................	23	1	3.00	3.00
..................................................................................................................................................TGAGATCCTTCTATTCTACTTT.............................	22	1	2.00	2.00
.......................................................................................................AGTAGCATAGCAGGCTTATCACA.......................................................................	23	1	2.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTGTCACA.......................................................................	23	1	2.00	2.00
.......................................................................................................AGTAGAATAGCAGGCTTATC..........................................................................	20	1	2.00	2.00
..................................................................................................................................................TGAGATTCTTCTATTCTTCTTT.............................	22	1	2.00	2.00
.........................................................................................................TAGAATAGCAGGCTTATCA.........................................................................	19	1	1.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCCCA.......................................................................	23	1	1.00	1.00
.........................................................................................................TAGAATAGAAGGCTTATCACA.......................................................................	21	1	1.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCGCA.......................................................................	23	1	1.00	1.00
.......................................................................................................AGTAGAATCGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.......................................................................................................AGCAGAATAGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.......................................................................................................AGAAGAATAGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.......................................................................................................AGTAGATTAGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.......................................................................................................AGTAGACTAGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.................................................................................................................................................CTGAGATTCTTCTATTCTACTTT.............................	23	1	1.00	1.00
.......................................................................................................AGTAGAAAAGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
......................................................................................................AAGTAGAATAGCAGGCTTATC..........................................................................	21	1	1.00	1.00
.................................................................................................................................................CTGAGGTTCTTCTATTCTACTTT.............................	23	1	1.00	1.00
.......................................................................................................AGTAGAATAGCCGGCTTATCA.........................................................................	21	1	1.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTCCTTT.............................	22	1	1.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTACT...............................	20	1	1.00	1.00
..................................................................................................................................................TAAGATTCTTCTATTCTACTTT.............................	22	1	1.00	1.00
..................................................................................................................................................TGAGACTCTTCTATTCTACTTT.............................	22	1	1.00	1.00
..................................................................................................................................................TGAGATTCTTCTATTCTAC................................	19	1	1.00	1.00
..................................................................................................................................................TGTGATTCTTCTATTCTACTTT.............................	22	1	1.00	1.00
.......................................................................................................AGTAGAATAGCAGGCTTATCACAT......................................................................	24	1	1.00	1.00
..................................................................................................................................................TGACATTCTTCTATTCTACTTT.............................	22	1	1.00	1.00
.......................................................................................................AGTAGAATGGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.........................................................................................................TAGAATAGCAGTCTTATCA.........................................................................	19	1	1.00	1.00
.......................................................................................................AGTGGAATAGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.......................................................................................................GGTAGAATAGCAGGCTTATCACA.......................................................................	23	1	1.00	1.00
.......................................................................................................AGTAGAATAGCAGGATTATCACA.......................................................................	23	1	1.00	1.00
.......................................................................................................AGTAxAATAGCAGGCTTATCACA.......................................................................	22	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image