dme-mir-957- Best orthologs

dme-mir-957	chr3L:22511296-22511391 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 22511310-22511331
   star strand at position 22511355-22511377
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:22511281-22511406 -		1	TTATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTA----TCCAA--------A
droSim1	chr3L:21812307-21812432 -	LASTZ	1	TTGTA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAATTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A
droSec1	super_11:2446955-2447080 -	LASTZ	1	TTGTA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A
droYak2	chr3L:22973852-22973977 -	LASTZ	1	TCATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-ATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTA----TCCAA--------A
droEre2	scaffold_4784:22180738-22180863 -	LASTZ	1	CCATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A
droEug1	scf7180000409801:98857-98979 -	LASTZ	4	CTG---A----TGT--GGAG------------TGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGAGAGCATCTG----ACCA----------
droBia1	scf7180000302377:742013-742139 +	LASTZ	4	TCC---C----AGCGTAGAA------------TGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-GAATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTA----ACCAA--------A
droTak1	scf7180000415491:455692-455815 -	LASTZ	4	CTA---A----TGT--AGCG------------TGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----ACCAA---------
droEle1	scf7180000491199:234612-234734 +	LASTZ	4	TTT---A----TAT--AGAG------------TGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----AC--A--------A
droRho1	scf7180000779133:19458-19582 +	LASTZ	4	TTT---A----AAT--AGAG------------TGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCA----ACCAA--------A
droFic1	scf7180000453830:518566-518689 +	LASTZ	4	TCA---A----AGT--AGAG------------TGTGGCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AG--CG-ATATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-GAGGCGTGAGCGTCTA----ACCAA--------A
droKik1	scf7180000302808:850777-850909 -	LASTZ	4	TCC---A----TAC--AGAG------------TGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTA----CCAAACCAAGTAAA
droAna3	scaffold_13337:22247678-22247807 -	LASTZ	1	TAAGA--TTCG----T--AATATAGTAATATATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATC--------------------
droBip1	scf7180000396426:572728-572849 +	LASTZ	4	ATA----------T--AGAG------------TATTGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----ACCAA--------C
dp4	chrXR_group8:186470-186597 -	LASTZ	1	ACC---C----ACCAGTAAA------------TACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAA--------A
droPer1	super_80:80367-80497 +	LASTZ	1	ACAACCC----ACCAGAATA------------TACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAA--------A
droWil1	scaffold_180698:7262478-7262610 +	LASTZ	1	TCT---CT---CGCAT--CA------------TA-TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAA--------A
droVir3	scaffold_13049:17242400-17242523 +	LASTZ	1	TTATT--TCCTAAC--TAGA------------TAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCA----A-------------
droMoj3	scaffold_6680:22273688-22273794 +	LASTZ	1	-----------------------------------TGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCA----G-------------
droGri2	scaffold_15110:14942014-14942124 -	LASTZ	1	T-----------------------------------ACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCA----AATAT--------C

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TTATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTA----TCCAA--------A
droSim1	TTGTA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAATTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A
droSec1	TTGTA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A
droYak2	TCATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-ATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTA----TCCAA--------A
droEre2	CCATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A
droEug1	CTG---A----TGT--GGAG------------TGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGAGAGCATCTG----ACCA----------
droBia1	TCC---C----AGCGTAGAA------------TGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-GAATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTA----ACCAA--------A
droTak1	CTA---A----TGT--AGCG------------TGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----ACCAA---------
droEle1	TTT---A----TAT--AGAG------------TGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----AC--A--------A
droRho1	TTT---A----AAT--AGAG------------TGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCA----ACCAA--------A
droFic1	TCA---A----AGT--AGAG------------TGTGGCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AG--CG-ATATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-GAGGCGTGAGCGTCTA----ACCAA--------A
droKik1	TCC---A----TAC--AGAG------------TGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTA----CCAAACCAAGTAAA
droAna3	TAAGA--TTCG----T--AATATAGTAATATATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATC--------------------
droBip1	ATA----------T--AGAG------------TATTGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----ACCAA--------C
dp4	ACC---C----ACCAGTAAA------------TACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAA--------A
droPer1	ACAACCC----ACCAGAATA------------TACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAA--------A
droWil1	TCT---CT---CGCAT--CA------------TA-TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAA--------A
droVir3	TTATT--TCCTAAC--TAGA------------TAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCA----A-------------
droMoj3	-----------------------------------TGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCA----G-------------
droGri2	T-----------------------------------ACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCA----AATAT--------C

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TTGTA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAATTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	176248.00	120.00	170635.00	3400.00	2093.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	29677.00	9.00	28649.00	912.00	107.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	10385.00	0.00	10084.00	268.00	33.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	5460.00	0.00	5310.00	135.00	15.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	4621.00	0.00	4485.00	120.00	16.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	4543.00	0.00	4422.00	68.00	53.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	1831.00	0.00	1780.00	44.00	7.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	1432.00	0.00	1361.00	63.00	8.00
...................................................................................................TGAAACCGTCCAAAACTG..............................................	18	1	1085.00	0.00	1051.00	30.00	4.00
...................................................................................................TGAAACCGTCCAAAACTGG.............................................	19	1	760.00	0.00	735.00	21.00	4.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	656.00	1.00	632.00	20.00	3.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	484.00	0.00	471.00	6.00	7.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	382.00	0.00	375.00	4.00	3.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.........................................	23	1	267.00	0.00	253.00	13.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	264.00	0.00	257.00	5.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGAGGG..........................................	22	1	223.00	0.00	203.00	11.00	9.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	217.00	0.00	211.00	4.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	213.00	0.00	204.00	7.00	2.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	211.00	0.00	198.00	13.00	0.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	1	193.00	0.00	186.00	4.00	3.00
...................................................................................................TGAAACCGTCCAAAACTGAC............................................	20	1	193.00	0.00	187.00	6.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	183.00	0.00	176.00	4.00	3.00
...................................................................................................TCAAACCGTCCAAAACTGAGGC..........................................	22	1	160.00	0.00	152.00	4.00	4.00
.....................................................................................................AAACCGTCCAAAACTGAGGC..........................................	20	1	158.00	0.00	148.00	4.00	6.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	1	144.00	0.00	141.00	0.00	3.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	137.00	0.00	131.00	3.00	3.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	119.00	0.00	113.00	6.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	112.00	1.00	108.00	2.00	1.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	99.00	0.00	96.00	3.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	90.00	0.00	83.00	2.00	5.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	89.00	0.00	87.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	82.00	0.00	79.00	0.00	3.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	1	71.00	1.00	69.00	0.00	1.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	68.00	0.00	66.00	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	63.00	0.00	62.00	0.00	1.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	63.00	0.00	62.00	1.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	62.00	0.00	61.00	1.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	62.00	0.00	59.00	1.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	60.00	0.00	58.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGAA.........................................	23	1	59.00	0.00	57.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCCT........................................	24	1	59.00	0.00	57.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	55.00	0.00	54.00	1.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	50.00	0.00	50.00	0.00	0.00
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	1	48.00	0.00	46.00	0.00	2.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	44.00	0.00	43.00	1.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	43.00	0.00	43.00	0.00	0.00
...................................................................................................TTAAACCGTCCAAAACTGAGG...........................................	21	1	42.00	0.00	41.00	1.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	42.00	0.00	41.00	1.00	0.00
...................................................................................................AGAAACCGTCCAAAACTGAGGC..........................................	22	1	40.00	0.00	36.00	1.00	3.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	40.00	0.00	38.00	0.00	2.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	39.00	1.00	38.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	39.00	0.00	38.00	1.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAA............................................	20	1	38.00	0.00	37.00	1.00	0.00
......................................................................................................AACCGTCCAAAACTGAGGC..........................................	19	1	37.00	0.00	36.00	0.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAAGC..........................................	22	1	35.00	0.00	34.00	0.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGTGG...........................................	21	1	35.00	0.00	34.00	1.00	0.00
...................................................................................................TGAAATCGTCCAAAACTGAGGC..........................................	22	1	34.00	0.00	31.00	1.00	2.00
...................................................................................................TGAAACCGACCAAAACTGAGGC..........................................	22	1	33.00	0.00	31.00	0.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	30.00	0.00	29.00	0.00	1.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	29.00	0.00	25.00	1.00	3.00
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	1	28.00	0.00	27.00	1.00	0.00
...................................................................................................TCAAACCGTCCAAAACTGAGG...........................................	21	1	28.00	0.00	26.00	2.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	27.00	0.00	25.00	2.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	26.00	0.00	24.00	0.00	2.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	26.00	0.00	26.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGTGAC..........................................	22	1	25.00	0.00	25.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGT.............................................	19	1	24.00	0.00	24.00	0.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAG............................................	20	1	24.00	0.00	22.00	1.00	1.00
.....................................................................................................AAACCGTCCAAAACTGAGG...........................................	19	1	23.00	0.00	21.00	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCAT........................................	24	1	23.00	0.00	22.00	1.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	1	23.00	0.00	21.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	22.00	0.00	21.00	0.00	1.00
...................................................................................................TGAAACCGTCCAAAATTGAGGC..........................................	22	1	21.00	0.00	21.00	0.00	0.00
...................................................................................................TGAAACCTTCCAAAACTGAGG...........................................	21	1	21.00	0.00	21.00	0.00	0.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	21.00	3.00	16.00	2.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGCT.........................................	23	1	20.00	0.00	19.00	1.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	20.00	0.00	19.00	1.00	0.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	20.00	0.00	19.00	1.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	19.00	0.00	19.00	0.00	0.00
....................................................................................................TGAACCGTCCAAAACTGAGGC..........................................	21	1	19.00	0.00	19.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	19.00	0.00	18.00	1.00	0.00
....................................................................................................TAAACCGTCCAAAACTGAGGC..........................................	21	1	19.00	0.00	19.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGAC.........................................	23	1	19.00	0.00	18.00	1.00	0.00
...................................................................................................GGAAACCGTCCAAAACTGAGGC..........................................	22	1	18.00	0.00	16.00	1.00	1.00
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	1	18.00	0.00	18.00	0.00	0.00
...................................................................................................TGAAACCGTGCAAAACTGAGGC..........................................	22	1	17.00	0.00	17.00	0.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	15.00	0.00	15.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAG............................................	20	1	15.00	0.00	15.00	0.00	0.00
...................................................................................................TGAAACCGTCCxxAACTGAGGC..........................................	20	1	15.00	0.00	14.00	1.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	15.00	0.00	14.00	1.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	14.00	0.00	14.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	14.00	0.00	14.00	0.00	0.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	14.00	1.00	13.00	0.00	0.00
...................................................................................................TGAAACCGTCCxAAACTGAGG...........................................	20	1	14.00	0.00	13.00	1.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGA.............................................	19	1	14.00	0.00	14.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCAA........................................	24	1	13.00	0.00	13.00	0.00	0.00
...................................................................................................TGAAACCCTCCAAAACTGAGGC..........................................	22	1	13.00	0.00	13.00	0.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGAC..........................................	22	1	13.00	0.00	13.00	0.00	0.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	13.00	0.00	12.00	1.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	13.00	0.00	13.00	0.00	0.00

droSec1

TTGTA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	32694.00	3310.00	94.00	29290.00
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	27699.00	2496.00	799.00	24404.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	1455.00	201.00	2.00	1252.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	382.00	22.00	2.00	358.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	330.00	41.00	0.00	289.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	263.00	23.00	0.00	240.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	154.00	2.00	0.00	152.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	104.00	16.00	0.00	88.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	84.00	4.00	0.00	80.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	1	75.00	7.00	0.00	68.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	70.00	25.00	0.00	45.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	64.00	3.00	1.00	60.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	61.00	8.00	0.00	53.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	1	60.00	1.00	0.00	59.00
...................................................................................................TGAAACCTTCCAAAACTGAGG...........................................	21	1	59.00	6.00	0.00	53.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	57.00	7.00	0.00	50.00
.................................................CTTAGTTTTCGACGTGTTTTGGT...........................................................................................	23	1	56.00	11.00	18.00	27.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	53.00	1.00	0.00	52.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	52.00	4.00	0.00	48.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	50.00	21.00	1.00	28.00
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	1	50.00	5.00	0.00	45.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	49.00	3.00	1.00	45.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	47.00	1.00	3.00	43.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	47.00	9.00	0.00	38.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	47.00	4.00	0.00	43.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	45.00	1.00	0.00	44.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	44.00	7.00	2.00	35.00
...................................................................................................TGAAACCGTCCxAAACTGAGG...........................................	20	1	44.00	6.00	1.00	37.00
...................................................................................................TGAAACCGTCCAAAACTGAAG...........................................	21	1	44.00	0.00	0.00	44.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	43.00	1.00	0.00	42.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	43.00	4.00	1.00	38.00
...................................................................................................TGAAACCGTACAAAACTGAGG...........................................	21	1	42.00	1.00	0.00	41.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	42.00	6.00	1.00	35.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	41.00	1.00	1.00	39.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	1	41.00	0.00	0.00	41.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	40.00	13.00	0.00	27.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	39.00	7.00	1.00	31.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	37.00	3.00	0.00	34.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	37.00	1.00	0.00	36.00
...................................................................................................TGAAAACGTCCAAAACTGAGG...........................................	21	1	37.00	0.00	0.00	37.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	36.00	2.00	0.00	34.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	36.00	4.00	0.00	32.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	35.00	4.00	1.00	30.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	35.00	5.00	0.00	30.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	34.00	3.00	3.00	28.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	34.00	0.00	0.00	34.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	32.00	6.00	0.00	26.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	32.00	16.00	0.00	16.00
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	1	31.00	1.00	2.00	28.00
...................................................................................................TTAAACCGTCCAAAACTGAGG...........................................	21	1	30.00	3.00	0.00	27.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	30.00	1.00	3.00	26.00
...................................................................................................TGAGACCGTCCAAAACTGAGG...........................................	21	1	30.00	7.00	0.00	23.00
...................................................................................................TGAAACCTTCCAAAACTGAGGC..........................................	22	1	29.00	1.00	0.00	28.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	27.00	4.00	0.00	23.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	27.00	2.00	5.00	20.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	27.00	3.00	0.00	24.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	26.00	2.00	0.00	24.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	26.00	2.00	0.00	24.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	25.00	2.00	0.00	23.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	25.00	0.00	0.00	25.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	25.00	1.00	0.00	24.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	25.00	3.00	2.00	20.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	24.00	1.00	0.00	23.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	24.00	2.00	0.00	22.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	24.00	4.00	0.00	20.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	24.00	3.00	0.00	21.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	24.00	2.00	0.00	22.00
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	1	23.00	1.00	0.00	22.00
...................................................................................................TGAAACCGTCCxxAACTGAGG...........................................	19	1	23.00	1.00	0.00	22.00
...................................................................................................TGAAACCGTCAAAAACTGAGG...........................................	21	1	23.00	0.00	0.00	23.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	23.00	2.00	1.00	20.00
...................................................................................................TGAAACCGTCCAAAACTGAAGC..........................................	22	1	23.00	1.00	0.00	22.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	1	22.00	3.00	0.00	19.00
.................................................CTTAGTTTTCGACGTGTTTTGG............................................................................................	22	1	22.00	6.00	2.00	14.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	21.00	3.00	1.00	17.00
...................................................................................................TGAAACCGACCAAAACTGAGGC..........................................	22	1	20.00	1.00	0.00	19.00
.....................................................................................................AAACCGTCCAAAACTGAGG...........................................	19	1	20.00	1.00	0.00	19.00
...................................................................................................TCAAACCGTCCAAAACTGAGG...........................................	21	1	20.00	2.00	0.00	18.00
...................................................................................................TGAAACCGACCAAAACTGAGG...........................................	21	1	20.00	0.00	0.00	20.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	20.00	5.00	0.00	15.00
...................................................................................................TGAAACCCTCCAAAACTGAGG...........................................	21	1	20.00	2.00	0.00	18.00
...................................................................................................AGAAACCGTCCAAAACTGAGGC..........................................	22	1	20.00	0.00	0.00	20.00
...................................................................................................TGAAACCGTTCAAAACTGAGG...........................................	21	1	19.00	3.00	0.00	16.00
...................................................................................................TGAAACCGTCCAAAACTGTGGC..........................................	22	1	19.00	17.00	0.00	2.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	18.00	3.00	0.00	15.00
...................................................................................................TGAAACCCTCCAAAACTGAGGC..........................................	22	1	18.00	0.00	1.00	17.00
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	1	17.00	0.00	4.00	13.00
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	1	17.00	2.00	0.00	15.00
...................................................................................................AGAAACCGTCCAAAACTGAGG...........................................	21	1	17.00	0.00	0.00	17.00
...................................................................................................TGAAACCGTCCGAAACTGAGG...........................................	21	1	17.00	3.00	0.00	14.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	16.00	0.00	0.00	16.00
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	1	16.00	1.00	0.00	15.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	16.00	1.00	0.00	15.00
...................................................................................................TGAAACCGTCCAAAACTAGG............................................	20	1	15.00	3.00	0.00	12.00
.....................................................................................................AAACCGTCCAAAACTGAGGC..........................................	20	1	15.00	0.00	0.00	15.00
...................................................................................................TGAAACCGTCCxxAACTGAGGC..........................................	20	1	15.00	0.00	2.00	13.00
...................................................................................................TGAAACCGTCCAAAACTGTGG...........................................	21	1	15.00	11.00	0.00	4.00
...................................................................................................TGAAACCGTCCAAAATTGAGG...........................................	21	1	14.00	2.00	0.00	12.00
...................................................................................................TGAAACCGTCCAAAACTG..............................................	18	1	14.00	0.00	0.00	14.00
...................................................................................................TGAAATCGTCCAAAACTGAGGC..........................................	22	1	14.00	1.00	3.00	10.00
...................................................................................................TGAAACCGTCCAAAAATGAGG...........................................	21	1	14.00	2.00	0.00	12.00

droYak2

TCATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-ATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTA----TCCAA--------A	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	2	48270.00	20.50	1668.50	453.00	5230.50	40897.50
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	2	10963.00	1.00	1305.50	567.00	4168.00	4921.50
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	2	2376.50	0.00	29.00	6.00	108.50	2233.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	2	1084.50	0.00	1.50	1.00	6.50	1075.50
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	2	909.50	0.00	62.00	30.00	225.50	592.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	2	588.50	0.00	8.00	0.00	18.50	562.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	2	490.00	0.00	5.50	0.50	10.50	473.50
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	2	293.00	0.00	39.00	7.50	130.00	116.50
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	2	267.00	0.00	3.00	0.00	10.00	254.00
...................................................................................................TGAAACCGTCCAAAACTG..............................................	18	2	191.50	0.00	0.00	0.00	0.00	191.50
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	2	156.50	0.00	4.00	0.00	58.50	94.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	2	118.50	0.00	6.00	1.00	110.00	1.50
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	2	114.50	0.00	19.50	0.00	47.00	48.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	2	105.00	0.50	12.50	0.50	90.50	1.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	2	102.00	0.00	4.50	1.50	96.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	2	98.50	0.00	2.50	0.00	1.50	94.50
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	2	97.50	0.00	11.00	1.00	84.50	1.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	2	97.00	0.00	4.00	1.00	81.50	10.50
...................................................................................................TGAAACCGTCCAAAACTGG.............................................	19	2	94.00	0.00	0.00	0.00	0.00	94.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	2	90.00	0.00	4.00	0.00	11.50	74.50
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	2	88.50	0.00	6.00	0.00	82.50	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	2	83.00	0.00	1.00	0.00	16.50	65.50
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	2	72.50	0.00	4.50	0.00	16.50	51.50
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	2	71.50	0.00	19.00	0.00	45.00	7.50
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	2	69.50	0.00	7.50	1.50	60.50	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.........................................	23	2	66.50	0.00	2.50	0.00	4.00	60.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	2	66.50	0.00	8.50	2.50	27.00	28.50
...................................................................................................TGAAACCGTCCAAAACTGAGGG..........................................	22	2	62.00	0.00	1.50	0.00	1.00	59.50
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	2	60.00	0.00	1.00	0.00	9.00	50.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	2	57.50	0.00	7.50	0.50	27.00	22.50
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	2	55.00	0.50	3.00	0.00	11.50	40.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	2	51.00	0.00	4.50	0.00	37.00	9.50
...................................................................................................TGAAACCGTCCATAACTGAGG...........................................	21	2	50.00	0.00	7.00	0.00	42.50	0.50
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	2	45.00	0.00	6.00	1.00	34.00	4.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	2	43.50	0.00	6.00	0.00	36.50	1.00
.....................................................................................................AAACCGTCCAAAACTGAGGC..........................................	20	2	41.00	0.00	0.50	0.00	0.50	40.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	2	38.50	0.00	0.00	0.00	3.00	35.50
...................................................................................................TCAAACCGTCCAAAACTGAGGC..........................................	22	2	38.50	0.00	0.00	0.50	3.00	35.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	2	37.50	0.00	3.50	1.50	10.50	22.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	2	31.50	0.00	1.00	3.00	17.00	10.50
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	2	31.50	0.00	1.00	0.50	5.50	24.50
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	2	31.00	0.00	1.50	0.00	3.50	26.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	2	31.00	0.00	3.00	0.00	26.00	2.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	2	30.00	0.00	1.50	1.00	15.50	12.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	2	29.50	0.00	1.00	1.00	10.00	17.50
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	2	27.00	0.00	4.00	0.00	19.00	4.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	2	26.00	0.00	2.50	1.00	16.50	6.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	2	25.50	0.00	1.00	0.00	9.00	15.50
...................................................................................................TGAAACCGTCCAAAACTGAC............................................	20	2	25.50	0.00	0.50	0.00	0.00	25.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	2	25.00	0.00	1.50	0.00	18.50	5.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	2	25.00	0.00	0.50	0.00	6.50	18.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	2	24.00	0.00	1.50	3.50	19.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	2	23.50	0.00	11.50	0.00	4.50	7.50
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	2	23.50	0.00	6.00	0.50	12.00	5.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	2	23.00	0.00	2.50	1.00	5.00	14.50
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	2	23.00	0.00	2.50	0.00	11.50	9.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	2	22.50	0.00	2.00	1.50	11.00	8.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	2	22.00	0.00	1.50	0.00	18.50	2.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	2	21.00	0.00	4.50	1.00	12.50	3.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	2	20.50	0.00	2.00	1.50	9.50	7.50
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	2	20.50	0.00	2.00	1.00	10.50	7.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	2	19.50	0.00	0.00	2.00	4.00	13.50
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	2	19.50	0.00	2.50	0.00	11.00	6.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	2	19.00	0.00	2.50	0.00	14.00	2.50
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	2	19.00	0.00	2.00	1.00	8.00	8.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	2	18.50	0.00	3.00	0.50	12.00	3.00
...................................................................................................TGAAACCGTCCAAAACTGTGG...........................................	21	2	18.50	0.00	0.00	0.00	9.00	9.50
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	2	18.00	0.00	0.50	0.00	11.00	6.50
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	2	17.00	0.00	2.50	0.50	9.50	4.50
...................................................................................................TGAAACCGTCCGAAACTGAGG...........................................	21	2	17.00	0.00	3.50	0.00	11.50	2.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	2	16.50	0.00	1.50	0.50	7.00	7.50
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	2	16.00	0.00	1.50	0.00	5.00	9.50
...................................................................................................TGAAACCGTCCAAAACGGAGGC..........................................	22	2	15.00	0.00	1.00	0.00	13.00	1.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	2	15.00	0.00	2.00	0.00	9.50	3.50
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	2	15.00	0.00	3.00	1.00	10.00	1.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	2	14.00	0.00	0.00	0.00	8.00	6.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCCT........................................	24	2	14.00	0.00	0.00	0.00	1.50	12.50
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	2	13.50	0.00	1.50	0.50	10.00	1.50
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	2	13.50	0.00	1.00	0.50	2.00	10.00
...................................................................................................TGAAACCGTCCAAAACTGTGGC..........................................	22	2	13.00	0.00	1.50	0.00	7.00	4.50
...................................................................................................TGAAACCGTCTAAAACTGAGG...........................................	21	2	13.00	0.00	10.00	0.50	2.00	0.50
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	2	12.50	0.00	1.50	0.00	6.50	4.50
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	2	12.50	0.00	1.50	0.50	5.00	5.50
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	2	12.50	0.00	0.00	0.00	7.00	5.50
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	2	11.50	0.00	2.00	1.00	4.00	4.50
...................................................................................................TGAAATCGTCCAAAACTGAGGC..........................................	22	2	11.50	0.00	0.50	0.50	2.00	8.50
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	2	11.50	0.00	0.50	0.00	10.00	1.00
......................................................................................................AACCGTCCAAAACTGAGGC..........................................	19	2	11.00	0.00	0.00	0.00	0.00	11.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	2	11.00	0.00	3.00	0.00	6.00	2.00
...................................................................................................TGAAACCTTCCAAAACTGAGG...........................................	21	2	11.00	0.00	0.00	0.00	4.00	7.00
.................................................CTTAGTTTTCGACGTGTTTTGGT...........................................................................................	23	2	10.50	1.00	3.50	0.50	3.50	2.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	2	10.00	0.00	1.50	0.00	6.00	2.50
...................................................................................................TGACACCGTCCAAAACTGAGGC..........................................	22	2	10.00	0.00	2.00	0.00	7.50	0.50
...................................................................................................TGAGACCGTCCAAAACTGAGG...........................................	21	2	10.00	0.00	1.50	0.00	6.50	2.00
...................................................................................................TGAAACCGTCCACAACTGCGG...........................................	21	2	9.50	0.00	0.50	0.00	9.00	0.00
...................................................................................................TGAAACCGTCCAATACTGAGGC..........................................	22	2	9.50	0.00	1.00	0.00	8.50	0.00
...................................................................................................TGAAACCGACCAAAACTGAGG...........................................	21	2	9.50	0.00	0.00	0.50	8.00	1.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	2	9.50	0.00	1.00	1.00	6.00	1.50
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	2	9.50	0.00	0.50	0.50	2.50	6.00
...................................................................................................TGAAACCGTCCAACACTGCGG...........................................	21	2	9.50	0.00	1.50	0.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAAGC..........................................	22	2	9.50	0.00	2.00	0.00	1.00	6.50

droEre2

CCATA--TCCG----T--AG------------TGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----TCCAA--------A	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	55581.00	97.00	6010.00	0.00	49474.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	52965.00	7.00	5443.00	0.00	47515.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	1710.00	0.00	188.00	0.00	1522.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	895.00	0.00	170.00	0.00	725.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	632.00	0.00	39.00	0.00	593.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	528.00	0.00	7.00	0.00	521.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	517.00	0.00	9.00	0.00	508.00
...................................................................................................TGAAACCGTCAAAAACTGAGG...........................................	21	1	467.00	0.00	4.00	0.00	463.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	462.00	1.00	10.00	0.00	451.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	461.00	0.00	6.00	0.00	455.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	415.00	0.00	11.00	0.00	404.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	378.00	0.00	4.00	0.00	374.00
...................................................................................................TTAAACCGTCCAAAACTGAGG...........................................	21	1	358.00	0.00	6.00	0.00	352.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	354.00	0.00	5.00	0.00	349.00
...................................................................................................TGAAACCGTACAAAACTGAGG...........................................	21	1	350.00	0.00	5.00	0.00	345.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	1	348.00	1.00	1.00	0.00	346.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	1	333.00	0.00	4.00	0.00	329.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	328.00	0.00	44.00	0.00	284.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	297.00	1.00	22.00	0.00	274.00
...................................................................................................TGAAACCTTCCAAAACTGAGG...........................................	21	1	230.00	0.00	2.00	0.00	228.00
...................................................................................................TGAAACCTTCCAAAACTGAGGC..........................................	22	1	226.00	0.00	1.00	0.00	225.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	195.00	0.00	12.00	0.00	183.00
.................................................CTTAGTTTTCGACGTGTTTTGGT...........................................................................................	23	1	178.00	3.00	10.00	0.00	165.00
...................................................................................................TGAAAACGTCCAAAACTGAGG...........................................	21	1	147.00	0.00	4.00	0.00	143.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	131.00	0.00	8.00	0.00	123.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	130.00	0.00	3.00	0.00	127.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	128.00	0.00	16.00	0.00	112.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	1	127.00	0.00	84.00	0.00	43.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	122.00	0.00	8.00	0.00	114.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	120.00	0.00	13.00	0.00	107.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	116.00	0.00	66.00	0.00	50.00
...................................................................................................TGAAACCGTCCAAAAATGAGG...........................................	21	1	116.00	0.00	5.00	0.00	111.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	113.00	0.00	59.00	0.00	54.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	1	111.00	1.00	6.00	0.00	104.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	107.00	0.00	24.00	0.00	83.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	100.00	0.00	6.00	0.00	94.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	97.00	0.00	8.00	0.00	89.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	97.00	0.00	11.00	0.00	86.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	91.00	0.00	48.00	0.00	43.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	90.00	1.00	4.00	0.00	85.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	89.00	0.00	7.00	0.00	82.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	88.00	0.00	7.00	0.00	81.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	87.00	0.00	3.00	0.00	84.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	87.00	0.00	42.00	0.00	45.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	1	86.00	0.00	5.00	0.00	81.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	85.00	0.00	12.00	0.00	73.00
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	1	83.00	0.00	4.00	0.00	79.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	83.00	0.00	5.00	0.00	78.00
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	1	82.00	0.00	42.00	0.00	40.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	82.00	0.00	7.00	0.00	75.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	79.00	0.00	10.00	0.00	69.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	75.00	0.00	4.00	0.00	71.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	75.00	0.00	8.00	0.00	67.00
...................................................................................................TGAAACCGTCTAAAACTGAGG...........................................	21	1	74.00	0.00	32.00	0.00	42.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	73.00	0.00	7.00	0.00	66.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	73.00	0.00	11.00	0.00	62.00
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	1	72.00	0.00	54.00	0.00	18.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	71.00	2.00	15.00	0.00	54.00
...................................................................................................TGAAACCGTCCxAAACTGAGG...........................................	20	1	70.00	0.00	6.00	0.00	64.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	68.00	0.00	7.00	0.00	61.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	68.00	0.00	7.00	0.00	61.00
...................................................................................................TGAGACCGTCCAAAACTGAGG...........................................	21	1	68.00	0.00	6.00	0.00	62.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	66.00	0.00	32.00	0.00	34.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	66.00	1.00	12.00	0.00	53.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	65.00	0.00	14.00	0.00	51.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	65.00	0.00	10.00	0.00	55.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	64.00	0.00	11.00	0.00	53.00
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	1	64.00	0.00	43.00	0.00	21.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	63.00	0.00	7.00	0.00	56.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	62.00	0.00	9.00	0.00	53.00
...................................................................................................TGCAACCGTCCAAAACTGAGG...........................................	21	1	60.00	0.00	2.00	0.00	58.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	60.00	2.00	9.00	0.00	49.00
...................................................................................................TGAAACCGTTCAAAACTGAGG...........................................	21	1	58.00	0.00	3.00	0.00	55.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	56.00	0.00	9.00	0.00	47.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	55.00	0.00	7.00	0.00	48.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	54.00	0.00	7.00	0.00	47.00
...................................................................................................TGCAACCGTCCAAAACTGAGGC..........................................	22	1	54.00	0.00	2.00	0.00	52.00
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	1	53.00	0.00	1.00	0.00	52.00
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	1	51.00	0.00	32.00	0.00	19.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	50.00	0.00	6.00	0.00	44.00
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	1	48.00	0.00	20.00	0.00	28.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.........................................	23	1	47.00	0.00	5.00	0.00	42.00
...................................................................................................TGAAACCGTCCGAAACTGAGG...........................................	21	1	47.00	0.00	14.00	0.00	33.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	42.00	0.00	13.00	0.00	29.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	42.00	0.00	9.00	0.00	33.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	42.00	0.00	6.00	0.00	36.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	41.00	0.00	8.00	0.00	33.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	40.00	0.00	4.00	0.00	36.00
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	1	40.00	0.00	9.00	0.00	31.00
...................................................................................................TGAAACCGTCCAAAACTGAAG...........................................	21	1	39.00	0.00	14.00	0.00	25.00
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	1	38.00	0.00	2.00	0.00	36.00
...................................................................................................TGAAACCGTCCxxAACTGAGGC..........................................	20	1	34.00	0.00	0.00	0.00	34.00
...................................................................................................TCAAACCGTCCAAAACTGAGGC..........................................	22	1	34.00	0.00	4.00	0.00	30.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	1	34.00	0.00	27.00	0.00	7.00
...................................................................................................TGAAACCGTCCATAACTGAGG...........................................	21	1	33.00	0.00	21.00	0.00	12.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	33.00	0.00	6.00	0.00	27.00
...................................................................................................TGAAACCGTCCAAAACTGAAGC..........................................	22	1	33.00	1.00	7.00	0.00	25.00
...................................................................................................TGAACCCGTCCAAAACTGAGGC..........................................	22	1	31.00	0.00	4.00	0.00	27.00
...................................................................................................TGAAACCCTCCAAAACTGAGG...........................................	21	1	31.00	0.00	1.00	0.00	30.00
...................................................................................................TGAAACCCTCCAAAACTGAGGC..........................................	22	1	30.00	0.00	0.00	0.00	30.00
...................................................................................................TGTAACCGTCCAAAACTGAGGC..........................................	22	1	29.00	0.00	2.00	0.00	27.00

droEug1

CTG---A----TGT--GGAG------------TGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGAGAGCATCTG----ACCA----------

Size

Hit Count

Total Norm

droBia1

TCC---C----AGCGTAGAA------------TGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-GAATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTA----ACCAA--------A

Size

Hit Count

Total Norm

droTak1

CTA---A----TGT--AGCG------------TGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----ACCAA---------

Size

Hit Count

Total Norm

droEle1

TTT---A----TAT--AGAG------------TGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----AC--A--------A

Size

Hit Count

Total Norm

droRho1

TTT---A----AAT--AGAG------------TGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCA----ACCAA--------A

Size

Hit Count

Total Norm

droFic1

TCA---A----AGT--AGAG------------TGTGGCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AG--CG-ATATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-GAGGCGTGAGCGTCTA----ACCAA--------A

Size

Hit Count

Total Norm

droKik1

TCC---A----TAC--AGAG------------TGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTA----CCAAACCAAGTAAA

Size

Hit Count

Total Norm

droAna3

TAAGA--TTCG----T--AATATAGTAATATATACTGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATC--------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	33292.00	2853.00	24551.00	5855.00	33.00
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	27507.00	1905.00	18878.00	6643.00	81.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	1294.00	207.00	646.00	441.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	625.00	15.00	570.00	39.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	360.00	24.00	187.00	147.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	328.00	22.00	280.00	26.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	308.00	36.00	161.00	111.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	297.00	31.00	250.00	16.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	224.00	31.00	184.00	9.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	214.00	33.00	111.00	69.00	1.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	194.00	13.00	174.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	157.00	2.00	106.00	49.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	156.00	16.00	125.00	15.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	128.00	13.00	79.00	36.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	104.00	5.00	79.00	20.00	0.00
...................................................................................................TTAAACCGTCCAAAACTGAGG...........................................	21	1	103.00	9.00	89.00	5.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	102.00	1.00	96.00	5.00	0.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	102.00	3.00	95.00	3.00	1.00
...................................................................................................TGAAACCGTCAAAAACTGAGG...........................................	21	1	98.00	9.00	74.00	14.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	98.00	4.00	80.00	14.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	90.00	6.00	56.00	28.00	0.00
.................................................CTTAGTTTTCGACGTGTTTTGGT...........................................................................................	23	1	89.00	5.00	78.00	6.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	85.00	6.00	67.00	12.00	0.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	80.00	6.00	50.00	24.00	0.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	80.00	3.00	50.00	27.00	0.00
...................................................................................................TGAAACCGTACAAAACTGAGG...........................................	21	1	76.00	8.00	55.00	13.00	0.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	74.00	5.00	58.00	11.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	73.00	3.00	30.00	38.00	2.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	73.00	6.00	54.00	13.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	70.00	6.00	42.00	22.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	69.00	1.00	56.00	12.00	0.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	1	67.00	5.00	48.00	14.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	65.00	5.00	39.00	20.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	64.00	2.00	8.00	54.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	63.00	2.00	29.00	32.00	0.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	1	62.00	9.00	48.00	5.00	0.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	61.00	3.00	44.00	14.00	0.00
...................................................................................................TGAAACCTTCCAAAACTGAGG...........................................	21	1	59.00	5.00	51.00	3.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	1	58.00	0.00	5.00	53.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	1	50.00	5.00	3.00	42.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	49.00	3.00	28.00	18.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGG...........................................	21	1	49.00	4.00	2.00	43.00	0.00
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	1	49.00	7.00	31.00	11.00	0.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	48.00	4.00	14.00	29.00	1.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	48.00	4.00	29.00	15.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	1	47.00	9.00	22.00	16.00	0.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	46.00	13.00	11.00	21.00	1.00
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	1	46.00	4.00	10.00	32.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	1	46.00	8.00	8.00	30.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	44.00	2.00	32.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	43.00	0.00	22.00	21.00	0.00
...................................................................................................TGAAACCGTCCGAAACTGAGG...........................................	21	1	42.00	13.00	19.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	42.00	0.00	8.00	34.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	42.00	4.00	24.00	14.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	42.00	4.00	25.00	13.00	0.00
...................................................................................................TGAAACCGTCCxAAACTGAGG...........................................	20	1	41.00	4.00	35.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	41.00	1.00	15.00	25.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	1	41.00	1.00	1.00	39.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	40.00	3.00	32.00	5.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	39.00	3.00	22.00	14.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGG...........................................	21	1	38.00	0.00	27.00	11.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	38.00	3.00	6.00	28.00	1.00
...................................................................................................TGAAACCGTCTAAAACTGAGG...........................................	21	1	37.00	6.00	23.00	8.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	37.00	1.00	18.00	18.00	0.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	1	36.00	0.00	9.00	27.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	36.00	3.00	12.00	21.00	0.00
...................................................................................................TGAAAACGTCCAAAACTGAGG...........................................	21	1	36.00	3.00	19.00	14.00	0.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	35.00	1.00	10.00	24.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	1	35.00	2.00	5.00	28.00	0.00
...................................................................................................AGAAACCGTCCAAAACTGAGGC..........................................	22	1	35.00	1.00	4.00	30.00	0.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	35.00	5.00	25.00	5.00	0.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	34.00	0.00	9.00	25.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.........................................	23	1	34.00	1.00	28.00	5.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	33.00	0.00	21.00	12.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	32.00	4.00	16.00	12.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	31.00	0.00	7.00	23.00	1.00
...................................................................................................TGAAACCGTCCAAAAATGAGG...........................................	21	1	31.00	8.00	13.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	1	31.00	7.00	7.00	16.00	1.00
...................................................................................................TGAAACCGTCCAAAACGGAGG...........................................	21	1	31.00	0.00	0.00	31.00	0.00
...................................................................................................TGAAACCGTTCAAAACTGAGG...........................................	21	1	31.00	0.00	25.00	6.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	31.00	0.00	18.00	13.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	31.00	1.00	24.00	6.00	0.00
...................................................................................................TGAAATCGTCCAAAACTGAGG...........................................	21	1	30.00	0.00	22.00	8.00	0.00
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	1	29.00	5.00	11.00	13.00	0.00
...................................................................................................TGAAACCGTCCTAAACTGAGG...........................................	21	1	29.00	13.00	6.00	10.00	0.00
...................................................................................................TGAAACCTTCCAAAACTGAGGC..........................................	22	1	28.00	2.00	22.00	2.00	2.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	1	27.00	3.00	15.00	8.00	1.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	27.00	4.00	10.00	13.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	27.00	1.00	17.00	8.00	1.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	27.00	4.00	16.00	7.00	0.00
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	1	26.00	3.00	22.00	1.00	0.00
...................................................................................................TGAAACCGTCCTAAACTGAGGC..........................................	22	1	26.00	7.00	3.00	16.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	26.00	3.00	10.00	12.00	1.00
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	1	25.00	5.00	6.00	14.00	0.00
...................................................................................................TGAAATCGTCCAAAACTGAGGC..........................................	22	1	25.00	2.00	15.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	24.00	3.00	16.00	4.00	1.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	24.00	4.00	9.00	10.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAT............................................	20	1	24.00	2.00	22.00	0.00	0.00
...................................................................................................GGAAACCGTCCAAAACTGAGG...........................................	21	1	23.00	2.00	3.00	18.00	0.00
...................................................................................................TGAAACCGACCAAAACTGAGG...........................................	21	1	23.00	0.00	4.00	19.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	23.00	1.00	15.00	7.00	0.00

droBip1

ATA----------T--AGAG------------TATTGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTA----ACCAA--------C

Size

Hit Count

Total Norm

dp4

ACC---C----ACCAGTAAA------------TACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAA--------A	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	8809.00	883.00	96.00	7655.00	175.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	8585.00	1268.00	11.00	7277.00	29.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	565.00	74.00	0.00	488.00	3.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	135.00	7.00	3.00	123.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	72.00	7.00	0.00	55.00	10.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	59.00	7.00	0.00	51.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	34.00	1.00	0.00	24.00	9.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	1	34.00	3.00	0.00	31.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	33.00	2.00	0.00	31.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	31.00	1.00	0.00	29.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	30.00	1.00	0.00	25.00	4.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	30.00	0.00	0.00	30.00	0.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	29.00	3.00	0.00	26.00	0.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	29.00	5.00	0.00	24.00	0.00
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	1	28.00	3.00	0.00	25.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	1	28.00	0.00	1.00	27.00	0.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	24.00	1.00	0.00	23.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	1	24.00	0.00	0.00	24.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	23.00	5.00	0.00	18.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	22.00	0.00	0.00	22.00	0.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	22.00	0.00	1.00	21.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	22.00	0.00	0.00	22.00	0.00
...................................................................................................TGCAACCGTCCAAAACTGAGGC..........................................	22	1	21.00	0.00	0.00	21.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	1	21.00	0.00	0.00	21.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	21.00	2.00	0.00	19.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	1	20.00	0.00	1.00	18.00	1.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	20.00	1.00	0.00	19.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	20.00	1.00	0.00	19.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGG...........................................	21	1	18.00	1.00	0.00	17.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	17.00	3.00	0.00	14.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	17.00	3.00	1.00	13.00	0.00
.................................................CTTAGTTTTCGACGTGTTTTGGT...........................................................................................	23	1	17.00	1.00	6.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAACGGAGGC..........................................	22	1	16.00	0.00	1.00	15.00	0.00
...................................................................................................TGAAACCGTCCAAAACGGAGG...........................................	21	1	15.00	0.00	0.00	15.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	15.00	0.00	0.00	14.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	15.00	0.00	0.00	15.00	0.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	14.00	1.00	0.00	13.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	1	14.00	3.00	0.00	11.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	14.00	0.00	0.00	14.00	0.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	14.00	3.00	0.00	11.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	14.00	1.00	0.00	11.00	2.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	14.00	1.00	0.00	13.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	13.00	0.00	0.00	13.00	0.00
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	1	13.00	0.00	1.00	12.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	13.00	2.00	0.00	11.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	12.00	1.00	0.00	11.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	12.00	1.00	0.00	11.00	0.00
...................................................................................................TGTAACCGTCCAAAACTGAGG...........................................	21	1	12.00	0.00	0.00	12.00	0.00
...................................................................................................TGCAACCGTCCAAAACTGAGG...........................................	21	1	12.00	0.00	0.00	12.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	12.00	1.00	0.00	11.00	0.00
...................................................................................................TGAAACCGTCCAAAAATGAGG...........................................	21	1	12.00	0.00	0.00	12.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	12.00	0.00	0.00	12.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGG...........................................	21	1	12.00	1.00	0.00	11.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	11.00	1.00	0.00	10.00	0.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	11.00	0.00	0.00	11.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	11.00	1.00	0.00	10.00	0.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	10.00	0.00	0.00	10.00	0.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	10.00	0.00	0.00	10.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	10.00	1.00	0.00	9.00	0.00
...................................................................................................AGAAACCGTCCAAAACTGAGG...........................................	21	1	10.00	1.00	0.00	8.00	1.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	10.00	0.00	0.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	10.00	1.00	0.00	9.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	10.00	0.00	0.00	10.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	1	9.00	1.00	0.00	8.00	0.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	1	9.00	1.00	0.00	8.00	0.00
...................................................................................................TGAAACCGACCAAAACTGAGGC..........................................	22	1	9.00	0.00	0.00	9.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	9.00	0.00	0.00	9.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	9.00	0.00	0.00	9.00	0.00
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	1	9.00	0.00	0.00	9.00	0.00
...................................................................................................GGAAACCGTCCAAAACTGAGG...........................................	21	1	9.00	0.00	0.00	9.00	0.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	9.00	1.00	1.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	9.00	0.00	0.00	8.00	1.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	9.00	0.00	0.00	9.00	0.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	1	8.00	0.00	0.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAAGC..........................................	22	1	8.00	0.00	0.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	8.00	0.00	1.00	7.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	8.00	0.00	1.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	8.00	1.00	0.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCCT........................................	24	1	7.00	0.00	0.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	7.00	0.00	0.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACAGAGGC..........................................	22	1	7.00	0.00	0.00	7.00	0.00
...................................................................................................TGAAACCGTCAAAAACTGAGG...........................................	21	1	7.00	1.00	0.00	6.00	0.00
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	1	7.00	2.00	0.00	5.00	0.00
...................................................................................................TGAAACCGTCCxAAACTGAGG...........................................	20	1	7.00	3.00	0.00	4.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	7.00	0.00	0.00	7.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	7.00	0.00	0.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	6.00	1.00	0.00	5.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................GGAAACCGTCCAAAACTGAGGC..........................................	22	1	6.00	1.00	0.00	5.00	0.00
...................................................................................................TGTAACCGTCCAAAACTGAGGC..........................................	22	1	6.00	1.00	0.00	5.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	6.00	1.00	0.00	4.00	1.00
...................................................................................................TGAAAACGTCCAAAACTGAGG...........................................	21	1	6.00	1.00	0.00	5.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................AGAAACCGTCCAAAACTGAGGC..........................................	22	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGTC..........................................	22	1	6.00	0.00	0.00	6.00	0.00
.....................................................................................................AAACCGTCCAAAACTGAGGC..........................................	20	1	6.00	0.00	0.00	6.00	0.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	1	5.00	0.00	0.00	5.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	5.00	1.00	0.00	4.00	0.00
...................................................................................................TGAAACCGTCCAACACTGAG............................................	20	1	5.00	0.00	0.00	5.00	0.00

droPer1

ACAACCC----ACCAGAATA------------TACTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTA----ACCAA--------A	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	20955.00	3070.00	47.00	6611.00	10408.00	819.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	18876.00	3954.00	12.00	5873.00	9008.00	29.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	965.00	140.00	1.00	309.00	514.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	385.00	26.00	0.00	136.00	223.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	251.00	33.00	0.00	57.00	151.00	10.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	158.00	27.00	0.00	38.00	92.00	1.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	1	129.00	1.00	0.00	10.00	118.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGG...........................................	21	1	112.00	0.00	0.00	17.00	95.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	1	106.00	0.00	0.00	6.00	100.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	1	101.00	1.00	0.00	16.00	84.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	97.00	18.00	0.00	26.00	46.00	7.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	93.00	4.00	0.00	14.00	74.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	83.00	12.00	0.00	35.00	35.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	78.00	6.00	0.00	19.00	53.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	75.00	2.00	0.00	26.00	47.00	0.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	71.00	0.00	0.00	13.00	58.00	0.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	1	70.00	0.00	0.00	30.00	40.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	64.00	1.00	0.00	11.00	38.00	14.00
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	1	64.00	0.00	0.00	15.00	49.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	1	63.00	2.00	0.00	17.00	43.00	1.00
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	1	61.00	0.00	0.00	11.00	50.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	61.00	2.00	0.00	14.00	45.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	57.00	2.00	0.00	14.00	41.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	57.00	2.00	0.00	14.00	41.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	55.00	7.00	0.00	20.00	26.00	2.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	53.00	1.00	0.00	18.00	34.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	52.00	1.00	0.00	15.00	36.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	50.00	1.00	0.00	19.00	30.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	49.00	1.00	0.00	15.00	33.00	0.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	47.00	3.00	0.00	17.00	26.00	1.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	45.00	3.00	0.00	5.00	37.00	0.00
...................................................................................................TGAAAGCGTCCAAAACTGAGGC..........................................	22	1	42.00	0.00	0.00	21.00	21.00	0.00
...................................................................................................AGAAACCGTCCAAAACTGAGGC..........................................	22	1	42.00	4.00	2.00	9.00	25.00	2.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	41.00	0.00	0.00	5.00	36.00	0.00
...................................................................................................TGAAACCGACCAAAACTGAGGC..........................................	22	1	41.00	0.00	0.00	12.00	29.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	40.00	2.00	0.00	8.00	26.00	4.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	1	40.00	2.00	0.00	4.00	34.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	40.00	0.00	0.00	13.00	27.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	39.00	4.00	0.00	10.00	24.00	1.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	39.00	6.00	0.00	10.00	23.00	0.00
...................................................................................................TGAAAGCGTCCAAAACTGAGG...........................................	21	1	39.00	0.00	0.00	30.00	9.00	0.00
...................................................................................................TGAAACCGTCCGAAACTGAGG...........................................	21	1	38.00	1.00	0.00	7.00	30.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	38.00	0.00	0.00	9.00	29.00	0.00
...................................................................................................TGAAACCGACCAAAACTGAGG...........................................	21	1	37.00	0.00	0.00	4.00	33.00	0.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	1	36.00	0.00	0.00	6.00	30.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	36.00	3.00	0.00	11.00	22.00	0.00
...................................................................................................TGAAACCGTCCAAAACAGAGGC..........................................	22	1	35.00	1.00	0.00	8.00	26.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	35.00	2.00	0.00	13.00	20.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	35.00	6.00	0.00	8.00	21.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	34.00	6.00	0.00	9.00	19.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	34.00	0.00	0.00	14.00	20.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	33.00	1.00	0.00	10.00	10.00	12.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	33.00	5.00	0.00	5.00	23.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	33.00	3.00	0.00	3.00	20.00	7.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	33.00	4.00	0.00	8.00	21.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	33.00	5.00	0.00	5.00	23.00	0.00
...................................................................................................TGAAACCGTCCAAAACGGAGG...........................................	21	1	33.00	0.00	0.00	6.00	27.00	0.00
...................................................................................................AGAAACCGTCCAAAACTGAGG...........................................	21	1	32.00	2.00	0.00	3.00	25.00	2.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	32.00	1.00	0.00	9.00	20.00	2.00
...................................................................................................TGAAACCGTCCAAAACGGAGGC..........................................	22	1	32.00	0.00	0.00	5.00	27.00	0.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	32.00	0.00	0.00	11.00	21.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	31.00	1.00	0.00	13.00	17.00	0.00
...................................................................................................TGAAACCGTCCAAAACAGAGG...........................................	21	1	30.00	0.00	0.00	7.00	23.00	0.00
......................................CCACGATGGACCTTACTT...........................................................................................................	18	1	30.00	0.00	0.00	0.00	0.00	30.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	30.00	0.00	0.00	6.00	24.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	30.00	3.00	0.00	3.00	24.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGTC..........................................	22	1	29.00	0.00	0.00	4.00	25.00	0.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	29.00	2.00	0.00	6.00	21.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGG...........................................	21	1	29.00	3.00	0.00	17.00	9.00	0.00
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	1	28.00	0.00	0.00	9.00	19.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	1	28.00	2.00	0.00	3.00	23.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	28.00	4.00	0.00	7.00	17.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	27.00	4.00	0.00	10.00	9.00	4.00
...................................................................................................GGAAACCGTCCAAAACTGAGGC..........................................	22	1	27.00	0.00	0.00	3.00	24.00	0.00
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	1	27.00	1.00	0.00	7.00	19.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	27.00	1.00	0.00	15.00	11.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	26.00	1.00	0.00	1.00	24.00	0.00
...................................................................................................TGAAACCGTCAAAAACTGAGG...........................................	21	1	26.00	1.00	0.00	4.00	21.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	1	25.00	3.00	0.00	8.00	14.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	25.00	1.00	0.00	10.00	14.00	0.00
.................................................CTTAGTTTTCGACGTGTTTTGGT...........................................................................................	23	1	25.00	10.00	0.00	9.00	6.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	25.00	5.00	0.00	9.00	11.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	24.00	3.00	0.00	1.00	20.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	24.00	2.00	0.00	4.00	18.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	24.00	1.00	0.00	10.00	13.00	0.00
...................................................................................................TGAAAACGTCCAAAACTGAGG...........................................	21	1	24.00	0.00	0.00	9.00	15.00	0.00
...................................................................................................TGAAATCGTCCAAAACTGAGG...........................................	21	1	23.00	1.00	0.00	15.00	7.00	0.00
...................................................................................................TGAAATCGTCCAAAACTGAGGC..........................................	22	1	23.00	0.00	0.00	16.00	7.00	0.00
...................................................................................................TGAAACCGTCCAATACTGAGG...........................................	21	1	22.00	0.00	0.00	3.00	19.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	22.00	3.00	0.00	7.00	12.00	0.00
...................................................................................................TGAAACCGTCCAAAAATGAGG...........................................	21	1	21.00	2.00	0.00	6.00	13.00	0.00
...................................................................................................GGAAACCGTCCAAAACTGAGG...........................................	21	1	21.00	0.00	0.00	2.00	19.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	21.00	1.00	0.00	3.00	17.00	0.00
...................................................................................................TGAAACCGTCCAATACTGAGGC..........................................	22	1	20.00	0.00	1.00	3.00	16.00	0.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	20.00	2.00	0.00	8.00	10.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	19.00	3.00	0.00	10.00	6.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGTGG...........................................	21	1	19.00	0.00	0.00	0.00	19.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGG...........................................	21	1	18.00	1.00	0.00	3.00	14.00	0.00
...................................................................................................TGAAACCGTACAAAACTGAGG...........................................	21	1	17.00	2.00	0.00	6.00	9.00	0.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	16.00	0.00	0.00	3.00	13.00	0.00
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	1	16.00	5.00	0.00	8.00	3.00	0.00

droWil1

TCT---CT---CGCAT--CA------------TA-TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTT-CTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAA--------A	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	235564.00	1255.00	856.00	24338.00	209115.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	53282.00	1656.00	121.00	27619.00	23886.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	8127.00	12.00	1.00	153.00	7961.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	3446.00	2.00	0.00	69.00	3375.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	3313.00	3.00	3.00	50.00	3257.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	2925.00	72.00	3.00	554.00	2296.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	2260.00	1.00	1.00	63.00	2195.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	958.00	3.00	1.00	11.00	943.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	874.00	14.00	4.00	132.00	724.00
...................................................................................................TGAAACCGTCCAAAACTG..............................................	18	1	828.00	0.00	0.00	0.00	828.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	590.00	1.00	0.00	23.00	566.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	538.00	14.00	1.00	184.00	339.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	481.00	1.00	1.00	27.00	452.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	461.00	7.00	1.00	346.00	107.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	447.00	0.00	1.00	31.00	415.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	373.00	13.00	0.00	228.00	132.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCCT........................................	24	1	335.00	1.00	0.00	3.00	331.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	276.00	2.00	1.00	43.00	230.00
...................................................................................................TGAAACCGTCCAAAACTGG.............................................	19	1	275.00	0.00	0.00	1.00	274.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	267.00	8.00	3.00	71.00	185.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	250.00	2.00	0.00	37.00	211.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	1	242.00	0.00	2.00	28.00	212.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	240.00	0.00	2.00	16.00	222.00
...................................................................................................TGAAACCGTCCAAAACTGAGGG..........................................	22	1	233.00	0.00	0.00	6.00	227.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	194.00	1.00	2.00	52.00	139.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	193.00	0.00	0.00	85.00	108.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	184.00	2.00	0.00	88.00	94.00
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	1	179.00	1.00	0.00	19.00	159.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	175.00	2.00	0.00	70.00	103.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	175.00	2.00	1.00	59.00	113.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.........................................	23	1	173.00	0.00	0.00	22.00	151.00
.....................................................................GGTGTGCTTAxGAAGTGTT-..........................................................................	18	1	172.00	2.00	2.00	168.00	0.00
...................................................................................................TCAAACCGTCCAAAACTGAGGC..........................................	22	1	158.00	0.00	0.00	13.00	145.00
.....................................................................................................AAACCGTCCAAAACTGAGGC..........................................	20	1	145.00	0.00	0.00	4.00	141.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	142.00	2.00	0.00	43.00	97.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	130.00	4.00	0.00	116.00	10.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	128.00	5.00	1.00	23.00	99.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	1	120.00	0.00	0.00	74.00	46.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	119.00	0.00	3.00	68.00	48.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	111.00	0.00	0.00	103.00	8.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	110.00	0.00	0.00	85.00	25.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	107.00	5.00	0.00	63.00	39.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	1	105.00	2.00	0.00	8.00	95.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	105.00	2.00	1.00	28.00	74.00
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	1	97.00	2.00	0.00	25.00	70.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	96.00	0.00	0.00	76.00	20.00
...................................................................................................TGAAACCGTACAAAACTGAGG...........................................	21	1	92.00	0.00	0.00	91.00	1.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	92.00	2.00	1.00	70.00	19.00
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	1	92.00	3.00	1.00	72.00	16.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	89.00	0.00	0.00	22.00	67.00
...................................................................................................TGAAACCGTCAAAAACTGAGG...........................................	21	1	89.00	1.00	0.00	82.00	6.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	87.00	5.00	0.00	64.00	18.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	87.00	2.00	3.00	22.00	60.00
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	1	86.00	2.00	3.00	22.00	59.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	83.00	0.00	1.00	24.00	58.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	79.00	0.00	0.00	68.00	11.00
...................................................................................................AGAAACCGTCCAAAACTGAGGC..........................................	22	1	79.00	0.00	0.00	51.00	28.00
....................................................................TGGTGTGCTTAxGAAGTGTT-..........................................................................	19	1	77.00	5.00	3.00	69.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	75.00	3.00	1.00	39.00	32.00
...................................................................................................TGAAACCGTCCAAAAATGAGG...........................................	21	1	75.00	1.00	0.00	74.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAAGC..........................................	22	1	75.00	0.00	0.00	45.00	30.00
...................................................................................................TGAAATCGTCCAAAACTGAGGC..........................................	22	1	72.00	1.00	0.00	31.00	40.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	72.00	3.00	0.00	37.00	32.00
.................................................CTTAGTTTTCGACGTGTTTTGGT...........................................................................................	23	1	71.00	1.00	10.00	55.00	5.00
...................................................................................................TGAAACCGTCCAAAACTGAAG...........................................	21	1	71.00	1.00	0.00	67.00	3.00
...................................................................................................TGAAAACGTCCAAAACTGAGG...........................................	21	1	69.00	0.00	0.00	68.00	1.00
...................................................................................................GGAAACCGTCCAAAACTGAGGC..........................................	22	1	66.00	0.00	1.00	45.00	20.00
...................................................................................................TTAAACCGTCCAAAACTGAGG...........................................	21	1	66.00	2.00	0.00	34.00	30.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	1	66.00	0.00	0.00	4.00	62.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	64.00	0.00	1.00	22.00	41.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	64.00	13.00	0.00	49.00	2.00
...................................................................................................TGAAACCTTCCAAAACTGAGGC..........................................	22	1	64.00	1.00	1.00	33.00	29.00
...................................................................................................TGAAACCGTCCAAAACTGAC............................................	20	1	64.00	0.00	0.00	0.00	64.00
...................................................................................................TGAAACCTTCCAAAACTGAGG...........................................	21	1	62.00	0.00	0.00	36.00	26.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	62.00	7.00	1.00	45.00	9.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	61.00	0.00	0.00	24.00	37.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	59.00	3.00	1.00	41.00	14.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	58.00	1.00	2.00	19.00	36.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	58.00	2.00	0.00	37.00	19.00
...................................................................................................GGAAACCGTCCAAAACTGAGG...........................................	21	1	55.00	0.00	0.00	53.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	53.00	2.00	0.00	49.00	2.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	1	52.00	3.00	0.00	46.00	3.00
...................................................................................................TGAAACCGTCCxAAACTGAGG...........................................	20	1	51.00	3.00	0.00	41.00	7.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	51.00	1.00	0.00	39.00	11.00
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	1	50.00	1.00	0.00	12.00	37.00
...................................................................................................AGAAACCGTCCAAAACTGAGG...........................................	21	1	49.00	1.00	0.00	43.00	5.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	48.00	0.00	0.00	30.00	18.00
......................................................................................................AACCGTCCAAAACTGAGGC..........................................	19	1	46.00	0.00	0.00	2.00	44.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	46.00	0.00	0.00	21.00	25.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	46.00	1.00	0.00	22.00	23.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	45.00	1.00	0.00	26.00	18.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	44.00	1.00	0.00	26.00	17.00
...................................................................................................TGAAACCGACCAAAACTGAGGC..........................................	22	1	44.00	1.00	1.00	16.00	26.00
.....................................................................................................AAACCGTCCAAAACTGAGG...........................................	19	1	43.00	0.00	0.00	19.00	24.00
...................................................................................................TGAGACCGTCCAAAACTGAGG...........................................	21	1	42.00	1.00	0.00	33.00	8.00
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	1	42.00	2.00	0.00	18.00	22.00
...................................................................................................TGAAACCGTCCAAAATTGAGGC..........................................	22	1	41.00	0.00	0.00	15.00	26.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	40.00	2.00	0.00	32.00	6.00
....................................................................................................TAAACCGTCCAAAACTGAGGC..........................................	21	1	39.00	0.00	0.00	0.00	39.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	38.00	0.00	1.00	26.00	11.00
...................................................................................................TCAAACCGTCCAAAACTGAGG...........................................	21	1	37.00	0.00	0.00	28.00	9.00

droVir3

TTATT--TCCTAAC--TAGA------------TAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCA----A-------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	40796.00	954.00	5445.00	89.00	2994.00	31314.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	16374.00	1758.00	7368.00	28.00	799.00	6421.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	1995.00	157.00	652.00	1.00	98.00	1087.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	1845.00	15.00	83.00	0.00	221.00	1526.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	1600.00	5.00	94.00	0.00	121.00	1380.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	924.00	0.00	3.00	0.00	45.00	876.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	404.00	5.00	7.00	0.00	96.00	296.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	298.00	1.00	9.00	1.00	33.00	254.00
...................................................................................................TGAAACCGTCCAAAACTG..............................................	18	1	286.00	0.00	0.00	0.00	29.00	257.00
...................................................................................................TGAAACCGTCCAAAACTGG.............................................	19	1	283.00	0.00	0.00	0.00	23.00	260.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	178.00	6.00	95.00	1.00	12.00	64.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	87.00	0.00	12.00	1.00	3.00	71.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	87.00	6.00	35.00	0.00	10.00	36.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	85.00	5.00	43.00	0.00	2.00	35.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	80.00	3.00	6.00	0.00	2.00	69.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	79.00	1.00	32.00	0.00	4.00	42.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.........................................	23	1	75.00	0.00	1.00	0.00	11.00	63.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	73.00	1.00	27.00	0.00	5.00	40.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	71.00	1.00	9.00	0.00	2.00	59.00
...................................................................................................TGAAACCGTCCAAAACTGAGGG..........................................	22	1	71.00	1.00	1.00	0.00	12.00	57.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	62.00	3.00	57.00	1.00	0.00	1.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	59.00	1.00	50.00	1.00	0.00	7.00
...................................................................................................TGAAACCGTCCAAAACTGAC............................................	20	1	56.00	0.00	3.00	0.00	1.00	52.00
...................................................................................................TGAAACCGTCCATAACTGAGG...........................................	21	1	52.00	0.00	50.00	0.00	0.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	50.00	1.00	5.00	0.00	2.00	42.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	1	48.00	0.00	41.00	0.00	0.00	7.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	47.00	0.00	37.00	1.00	0.00	9.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	45.00	4.00	18.00	0.00	2.00	21.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	45.00	2.00	19.00	0.00	2.00	22.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	45.00	7.00	32.00	0.00	0.00	6.00
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	1	45.00	1.00	3.00	2.00	1.00	38.00
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	1	44.00	0.00	44.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	42.00	0.00	19.00	0.00	4.00	19.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	42.00	2.00	9.00	1.00	3.00	27.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	41.00	1.00	38.00	1.00	0.00	1.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	1	40.00	1.00	38.00	0.00	1.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	36.00	0.00	12.00	0.00	0.00	24.00
...................................................................................................TTAAACCGTCCAAAACTGAGGC..........................................	22	1	36.00	1.00	3.00	0.00	1.00	31.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	1	36.00	0.00	19.00	0.00	1.00	16.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	35.00	2.00	26.00	0.00	1.00	6.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	1	32.00	0.00	31.00	0.00	0.00	1.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	30.00	3.00	23.00	0.00	1.00	3.00
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	1	30.00	1.00	28.00	1.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCCT........................................	24	1	30.00	0.00	2.00	0.00	11.00	17.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	29.00	2.00	7.00	0.00	2.00	18.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	28.00	0.00	3.00	0.00	3.00	22.00
...................................................................................................TCAAACCGTCCAAAACTGAGGC..........................................	22	1	25.00	1.00	3.00	0.00	4.00	17.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	25.00	0.00	11.00	0.00	2.00	12.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	1	25.00	3.00	21.00	1.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGTGG...........................................	21	1	24.00	0.00	7.00	0.00	2.00	15.00
.....................................................................................................AAACCGTCCAAAACTGAGGC..........................................	20	1	24.00	0.00	2.00	0.00	1.00	21.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	24.00	1.00	4.00	0.00	2.00	17.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	23.00	0.00	5.00	0.00	2.00	16.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	23.00	0.00	14.00	0.00	2.00	7.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	22.00	1.00	11.00	0.00	3.00	7.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	22.00	0.00	19.00	0.00	0.00	3.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	22.00	1.00	8.00	0.00	0.00	13.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	22.00	3.00	17.00	0.00	1.00	1.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	21.00	2.00	8.00	0.00	1.00	10.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	21.00	0.00	10.00	0.00	0.00	11.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	21.00	0.00	14.00	0.00	1.00	6.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	21.00	4.00	3.00	0.00	0.00	14.00
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	1	20.00	0.00	8.00	0.00	3.00	9.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	20.00	2.00	15.00	0.00	0.00	3.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	20.00	10.00	7.00	0.00	0.00	3.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	19.00	2.00	13.00	0.00	0.00	4.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	18.00	5.00	11.00	0.00	0.00	2.00
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	1	18.00	1.00	17.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	17.00	0.00	7.00	0.00	3.00	7.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	17.00	0.00	10.00	0.00	1.00	6.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	17.00	1.00	4.00	0.00	2.00	10.00
...................................................................................................TGAAACCGTCCAAAACAGAGG...........................................	21	1	17.00	4.00	13.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	1	17.00	0.00	15.00	0.00	0.00	2.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	17.00	1.00	4.00	0.00	0.00	12.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	16.00	0.00	11.00	0.00	0.00	5.00
...................................................................................................TGAAAACGTCCAAAACTGAGG...........................................	21	1	16.00	0.00	16.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	16.00	0.00	5.00	0.00	2.00	9.00
...................................................................................................TGAAACCGTCCGAAACTGAGG...........................................	21	1	16.00	2.00	11.00	0.00	1.00	2.00
....................................................................................................GAAACCGTCCAAAACTGAGGCT.........................................	22	1	15.00	0.00	1.00	0.00	3.00	11.00
...................................................................................................TGAAACCGACCAAAACTGAGGC..........................................	22	1	15.00	0.00	13.00	0.00	0.00	2.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	15.00	0.00	12.00	2.00	0.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGT.............................................	19	1	15.00	0.00	2.00	0.00	1.00	12.00
...................................................................................................TGAAACCGTCCAAATCTGAGG...........................................	21	1	15.00	0.00	14.00	0.00	0.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	15.00	1.00	7.00	0.00	2.00	5.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	15.00	0.00	12.00	0.00	0.00	3.00
...................................................................................................TGAAACCGTCCAAAACTGAA............................................	20	1	14.00	0.00	0.00	0.00	1.00	13.00
...................................................................................................TGAAACCGTCCAAAACGGAGG...........................................	21	1	14.00	0.00	14.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCCC........................................	24	1	14.00	0.00	0.00	0.00	13.00	1.00
...................................................................................................TGAAACCGGCCAAAACGGAGG...........................................	21	1	14.00	0.00	14.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCCAATACTGAGG...........................................	21	1	13.00	0.00	13.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCCTAAACTGAGG...........................................	21	1	12.00	0.00	12.00	0.00	0.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGACG...........................................	21	1	12.00	0.00	12.00	0.00	0.00	0.00
...................................................................................................GGAAACCGTCCAAAACTGAGGC..........................................	22	1	12.00	0.00	5.00	0.00	3.00	4.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	12.00	1.00	9.00	1.00	0.00	1.00
...................................................................................................TGAAACCGACCAAAACTGAGG...........................................	21	1	12.00	0.00	12.00	0.00	0.00	0.00
...................................................................................................TGAAACCGTCCAAAACGGAGGC..........................................	22	1	11.00	0.00	9.00	0.00	0.00	2.00
.................................................CTTAGTTTTAGACGTGTTTTGG............................................................................................	22	1	11.00	4.00	6.00	1.00	0.00	0.00
...................................................................................................TGAAACCGTCCxAAACTGAGGC..........................................	21	1	11.00	1.00	1.00	0.00	0.00	9.00
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	1	11.00	0.00	4.00	0.00	1.00	6.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	10.00	1.00	4.00	1.00	0.00	4.00
...................................................................................................TGAAACCGTCCATAACTGAGTC..........................................	22	1	10.00	0.00	10.00	0.00	0.00	0.00

droMoj3

-----------------------------------TGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCA----G-------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	16383.00	2057.00	9660.00	4641.00	25.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	14091.00	2283.00	8015.00	3791.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	628.00	122.00	351.00	155.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	384.00	43.00	231.00	110.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	245.00	23.00	165.00	57.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.........................................	23	1	244.00	19.00	144.00	81.00	0.00
...................................................................................................TGAAACCGTCCAACACTGAGGC..........................................	22	1	119.00	0.00	44.00	75.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT........................................	24	1	111.00	12.00	69.00	30.00	0.00
...................................................................................................TGAAACCGTCCCAAACTGAGGC..........................................	22	1	106.00	0.00	8.00	98.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGGC..........................................	22	1	100.00	0.00	25.00	75.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGG...........................................	21	1	95.00	0.00	58.00	37.00	0.00
...................................................................................................TGAAACCGTCCCAAACTGAGG...........................................	21	1	91.00	1.00	10.00	80.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGA.............................................	19	1	91.00	5.00	56.00	30.00	0.00
...................................................................................................TGAAACCGTCCAAACCTGAGGC..........................................	22	1	88.00	1.00	49.00	38.00	0.00
...................................................................................................TGAAACCGTCCAACACTGAGG...........................................	21	1	84.00	0.00	23.00	61.00	0.00
...................................................................................................TGAAACCGTCCACAACTGAGG...........................................	21	1	84.00	1.00	21.00	62.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGGC..........................................	22	1	84.00	0.00	59.00	25.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGA..........................................	22	1	75.00	5.00	49.00	21.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	66.00	0.00	19.00	47.00	0.00
...................................................................................................TGAAACCGTCCAAACCTGAGG...........................................	21	1	60.00	0.00	31.00	29.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGGC..........................................	22	1	60.00	2.00	46.00	12.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	59.00	0.00	22.00	37.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	54.00	4.00	37.00	13.00	0.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	50.00	3.00	40.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACG...........................................	21	1	48.00	1.00	20.00	27.00	0.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	1	37.00	0.00	27.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGTT.........................................	23	1	36.00	1.00	28.00	7.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	36.00	1.00	25.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	36.00	0.00	16.00	20.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	35.00	1.00	11.00	22.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	34.00	6.00	16.00	12.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGGC..........................................	22	1	33.00	4.00	17.00	12.00	0.00
..................................................................................................CTGAAACCGTCCAAAACTGAGGC..........................................	23	1	31.00	4.00	19.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGG...........................................	21	1	31.00	1.00	14.00	16.00	0.00
...................................................................................................TGAAACCGTCTAAAACTGAGG...........................................	21	1	30.00	1.00	6.00	23.00	0.00
...................................................................................................CGAAACCGTCCAAAACTGAGG...........................................	21	1	30.00	6.00	17.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGATG...........................................	21	1	30.00	1.00	14.00	15.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	30.00	2.00	15.00	12.00	1.00
..................................................................................................CTGAAACCGTCCAAAACTGAGG...........................................	22	1	30.00	2.00	18.00	10.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGG...........................................	21	1	29.00	3.00	16.00	10.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	28.00	3.00	22.00	3.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGGC..........................................	22	1	27.00	1.00	21.00	5.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGT...........................................	21	1	27.00	1.00	19.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACCGAGGC..........................................	22	1	27.00	1.00	17.00	9.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	25.00	1.00	20.00	4.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAGGC..........................................	22	1	25.00	2.00	14.00	9.00	0.00
...................................................................................................TGAAACAGTCCAAAACTGAGG...........................................	21	1	24.00	0.00	17.00	7.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	24.00	2.00	13.00	9.00	0.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	24.00	0.00	22.00	2.00	0.00
...................................................................................................TGAAACCGTCCGAAACTGAGG...........................................	21	1	24.00	0.00	21.00	3.00	0.00
...................................................................................................TGAAACCGTCCAAAGCTGAGG...........................................	21	1	24.00	4.00	15.00	5.00	0.00
...................................................................................................TGAAGCCGTCCAAAACTGAGG...........................................	21	1	23.00	3.00	12.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.........................................	23	1	23.00	2.00	13.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGA...........................................	21	1	22.00	2.00	14.00	6.00	0.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	22.00	1.00	15.00	6.00	0.00
...................................................................................................TGAAACCGTCCAAAAATGAGGC..........................................	22	1	22.00	0.00	18.00	4.00	0.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	22.00	0.00	16.00	6.00	0.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	22.00	3.00	9.00	9.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.........................................	23	1	21.00	1.00	15.00	5.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGGC..........................................	22	1	21.00	3.00	12.00	6.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	21.00	1.00	17.00	3.00	0.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	21.00	3.00	12.00	6.00	0.00
...................................................................................................TGACACCGTCCAAAACTGAGGC..........................................	22	1	20.00	0.00	10.00	10.00	0.00
...................................................................................................TGAGACCGTCCAAAACTGAGGC..........................................	22	1	19.00	0.00	14.00	5.00	0.00
...................................................................................................TGAAACCGTCCAAGACTGAGG...........................................	21	1	19.00	2.00	13.00	4.00	0.00
...................................................................................................TGACACCGTCCAAAACTGAGG...........................................	21	1	19.00	1.00	5.00	13.00	0.00
...................................................................................................TGAAACCGTCCGAAACTGAGGC..........................................	22	1	19.00	0.00	15.00	4.00	0.00
...................................................................................................TGAAACCGTCCAAAACTTAGGC..........................................	22	1	18.00	0.00	7.00	11.00	0.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	18.00	2.00	9.00	7.00	0.00
...................................................................................................TGAAACCGTCCATAACTGAGTC..........................................	22	1	18.00	0.00	13.00	5.00	0.00
...................................................................................................TGAAACCGTCCAAAACGGAGGC..........................................	22	1	18.00	0.00	12.00	6.00	0.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	17.00	0.00	10.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGG...........................................	21	1	17.00	0.00	14.00	3.00	0.00
...................................................................................................TGAAACCGTCCTAAACTGAGGC..........................................	22	1	17.00	0.00	11.00	6.00	0.00
...................................................................................................TGAAACTGTCCAAAACTGAGG...........................................	21	1	17.00	1.00	10.00	6.00	0.00
...................................................................................................TGAAACCGACCAAAACTGAGGC..........................................	22	1	17.00	0.00	16.00	1.00	0.00
...................................................................................................TGAAACCATCCAAAACTGAGG...........................................	21	1	17.00	0.00	12.00	5.00	0.00
...................................................................................................TGAAACCGTCCCACACTGAGGC..........................................	22	1	16.00	0.00	2.00	14.00	0.00
...................................................................................................TGAAACCGTCAAAAACTGAGG...........................................	21	1	16.00	3.00	11.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACAGAGG...........................................	21	1	15.00	1.00	11.00	3.00	0.00
.................................................CTTAGTTTTAGACGTGTTTTGGT...........................................................................................	23	1	15.00	7.00	4.00	4.00	0.00
...................................................................................................TGAAACCGTCCTAAACTGAGG...........................................	21	1	15.00	0.00	11.00	4.00	0.00
...................................................................................................TGAAACCGTCCAGAACTGAGG...........................................	21	1	15.00	3.00	8.00	4.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGG...........................................	20	1	14.00	2.00	10.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACTAAGG...........................................	21	1	14.00	3.00	6.00	5.00	0.00
...................................................................................................AGAAACCGTCCAAAACTGAGGC..........................................	22	1	14.00	0.00	7.00	7.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGGGGC..........................................	22	1	14.00	0.00	10.00	4.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAAGC..........................................	22	1	14.00	0.00	6.00	8.00	0.00
...................................................................................................TGAAACCGTCCAAAAATGAGG...........................................	21	1	14.00	1.00	8.00	4.00	1.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	14.00	0.00	10.00	4.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAAG...........................................	21	1	13.00	1.00	5.00	7.00	0.00
...................................................................................................TGAAACCGTCCAATACTGAGGC..........................................	22	1	13.00	0.00	11.00	2.00	0.00
...................................................................................................TGAAACCGTCCATAACTGGGG...........................................	21	1	13.00	0.00	12.00	1.00	0.00
...................................................................................................TGAAACCGTCAAAAACTGAGGC..........................................	22	1	13.00	1.00	9.00	3.00	0.00
...................................................................................................TGAAACCGGCCAAAACGGAGGC..........................................	22	1	13.00	0.00	8.00	5.00	0.00
...................................................................................................TGGAACCGTCCATAACTGAGGC..........................................	22	1	13.00	0.00	6.00	7.00	0.00
....................................................................................................GAAACCGTCCAAAACTGAGGC..........................................	21	1	13.00	1.00	10.00	2.00	0.00
...................................................................................................TGAAACCGTCCAAAACTGAGAC..........................................	22	1	12.00	1.00	8.00	3.00	0.00
...................................................................................................TAAAACCGTCCAAAACTGAGG...........................................	21	1	12.00	6.00	4.00	2.00	0.00
...................................................................................................TGGAACCGTCCAAAACTGAGGC..........................................	22	1	12.00	0.00	8.00	4.00	0.00
...................................................................................................GGAAACCGTCCAAAACTGAGGC..........................................	22	1	12.00	0.00	7.00	5.00	0.00

droGri2

T-----------------------------------ACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TT-TTGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCA----AATAT--------C	Size	Hit Count	Total Norm	V109 Male body
...................................................................................................TGAAACCGTCCAAAACTGAGGC..........................................	22	1	225.00	225.00
...................................................................................................TGAAACCGTCCAAAACTGAGG...........................................	21	1	126.00	126.00
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.........................................	23	1	4.00	4.00
...................................................................................................TGAAAGCGTCCAAAACTGAGGC..........................................	22	1	2.00	2.00
...................................................................................................TGAAACCGTCCAAAACTCAGGC..........................................	22	1	2.00	2.00
...................................................................................................TGAAACCGTCCAAAACTAAGGC..........................................	22	1	2.00	2.00
...................................................................................................TGAAACCGTCCAAAACTTAGG...........................................	21	1	2.00	2.00
...................................................................................................TGAAACCGCCCAAAACTGAGG...........................................	21	1	2.00	2.00
...................................................................................................TGAAACCGTCCAAAACTGACGC..........................................	22	1	2.00	2.00
...................................................................................................TGAAACTGTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTACAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGGCCAAAACTAAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGGCCAAAACTGAGG...........................................	21	1	1.00	1.00
...................................................................................................TGCAACCGTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGCGG...........................................	21	1	1.00	1.00
...................................................................................................TGAAACCGTTCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGC...........................................	21	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAG............................................	20	1	1.00	1.00
...................................................................................................TGAAACAGTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGCGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGACCAAAACTGAGGCT.........................................	23	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTCAGG...........................................	21	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGCC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCCxAAACTGAGG...........................................	20	1	1.00	1.00
...................................................................................................TGAAGCCGTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCCTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCTAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGTC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTTCAAAACTGAGG...........................................	21	1	1.00	1.00
...................................................................................................TAAAACCGTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACGGTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGACCAAAACTGAGG...........................................	21	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGAGGT..........................................	22	1	1.00	1.00
...................................................................................................TGAAAACGTCCAAAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCCAGAACTGAGGC..........................................	22	1	1.00	1.00
...................................................................................................TGGAACCGTCCAAAACTGAGG...........................................	21	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAACTGATGC..........................................	22	1	1.00	1.00
...................................................................................................TGAAACCGTCCAAAGCTGAGGC..........................................	22	1	1.00	1.00

Generated: 04/20/2012 at 05:19:44 EDT

dme-mir-957

chr3L:22511296-22511391 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup