dme-mir-87- Best orthologs

dme-mir-87	chr2L:9950418-9950516 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 9950433-9950456
   star strand at position 9950483-9950504
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2L:9950403-9950531 -		1	CCAA-AGTCCT-----------T-TGG-CAACACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TTATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGAATTT
droSim1	chr2L:9739846-9739974 -	LASTZ	1	CTTA-AGTCCT-----------T-TGG-CGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TCATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGGATTT
droSec1	super_3:5397127-5397255 -	LASTZ	1	ACCA-AGTCCT-----------T-TGG-CGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TCATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGGATTT
droYak2	chr2L:12640967-12641095 -	LASTZ	1	TCCA-AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTATGGTCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC--------------------------------GGAGGATTT
droEre2	scaffold_4929:10570531-10570659 -	LASTZ	1	CACG-AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCA-TTATGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC--------------------------------GGACGATTT
droEug1	scf7180000409554:4961907-4962035 +	LASTZ	4	TTTA-AGTCCT-----------T-TAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TATTGGCCCAAGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATC--------------------------------GAAGGATTT
droBia1	scf7180000301468:52263-52391 -	LASTZ	4	CCAA-AAATCC-----------T-AGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCA-CTTTGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCTTTCATC--------------------------------GAGGGATGA
droTak1	scf7180000415667:562565-562692 +	LASTZ	4	TTAC-TTAAAT-----------T-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-CTTTGGCCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAACCATC--------------------------------GAGGGAT-T
droEle1	scf7180000491186:3003977-3004106 -	LASTZ	4	AG----CTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTTACCA-TATTGGCCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCAA------------------------------AAAAGTGT
droRho1	scf7180000779234:243647-243807 +	LASTZ	4	TAC--AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TATTGGCCATCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCACGAAAGTGTTCTGGAAACGATATGGTACAAGGAGATCTT
droFic1	scf7180000449513:87-213 +	LASTZ	4	CAAA-ACTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCAATATTGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCAAC--------------------------------TGTAAA---
droKik1	scf7180000302677:173647-173776 +	LASTZ	4	TTAT-AATCCT-----------TCGGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TTTGGGCCTACAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AATGGGTTT
droAna3	scaffold_12916:13789760-13789886 -	LASTZ	1	TG---AATCCTTT---------C-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCG-ATATGGCACAGAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AAAAGAT--
droBip1	scf7180000396535:753813-753942 -	LASTZ	4	TGAAGAATCCTTT---------C-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-ATGTGGCACACAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCATC--------------------------------AAATGAT--
dp4	chr4_group3:220105-220226 +	LASTZ	1	TCCT-A--CCG-----------TGTGC-TGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCA-TAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AC-------
droPer1	super_1:1694906-1695025 +	LASTZ	1	TCCT-A--CCG-----------TGTGC-TGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCA-TAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC-----------------------------------------
droWil1	scaffold_180708:12250833-12250971 -	LASTZ	1	CCAA---TCAA--AATTAACATT-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCAATTGTGATCTTCATTTCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTGACGGTAACATC--------------------------------GTTGGAATA
droVir3	scaffold_12723:3996238-3996344 +	LASTZ	1	CT----ATCCC-----------T-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTGAGACATCTAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGT-----------------------------------------------------
droMoj3	scaffold_6500:14729857-14729979 -	LASTZ	1	------ATCCT-----------T-AGC-CGGCATCTTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTGTCACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGTCTCATC--------------------------------AAAGCA---
droGri2	scaffold_15252:3661296-3661426 -	LASTZ	1	TT----ATCCT-----------T-GAC-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TTGTGACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGCTTCATCACTT----------------------------GGTGGATAG

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CCAA-AGTCCT-----------T-TGG-CAACACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TTATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGAATTT
droSim1	CTTA-AGTCCT-----------T-TGG-CGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TCATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGGATTT
droSec1	ACCA-AGTCCT-----------T-TGG-CGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TCATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGGATTT
droYak2	TCCA-AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTATGGTCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC--------------------------------GGAGGATTT
droEre2	CACG-AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCA-TTATGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC--------------------------------GGACGATTT
droEug1	TTTA-AGTCCT-----------T-TAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TATTGGCCCAAGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATC--------------------------------GAAGGATTT
droBia1	CCAA-AAATCC-----------T-AGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCA-CTTTGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCTTTCATC--------------------------------GAGGGATGA
droTak1	TTAC-TTAAAT-----------T-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-CTTTGGCCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAACCATC--------------------------------GAGGGAT-T
droEle1	AG----CTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTTACCA-TATTGGCCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCAA------------------------------AAAAGTGT
droRho1	TAC--AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TATTGGCCATCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCACGAAAGTGTTCTGGAAACGATATGGTACAAGGAGATCTT
droFic1	CAAA-ACTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCAATATTGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCAAC--------------------------------TGTAAA---
droKik1	TTAT-AATCCT-----------TCGGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TTTGGGCCTACAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AATGGGTTT
droAna3	TG---AATCCTTT---------C-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCG-ATATGGCACAGAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AAAAGAT--
droBip1	TGAAGAATCCTTT---------C-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-ATGTGGCACACAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCATC--------------------------------AAATGAT--
dp4	TCCT-A--CCG-----------TGTGC-TGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCA-TAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AC-------
droPer1	TCCT-A--CCG-----------TGTGC-TGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCA-TAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC-----------------------------------------
droWil1	CCAA---TCAA--AATTAACATT-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCAATTGTGATCTTCATTTCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTGACGGTAACATC--------------------------------GTTGGAATA
droVir3	CT----ATCCC-----------T-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTGAGACATCTAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGT-----------------------------------------------------
droMoj3	------ATCCT-----------T-AGC-CGGCATCTTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTGTCACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGTCTCATC--------------------------------AAAGCA---
droGri2	TT----ATCCT-----------T-GAC-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TTGTGACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGCTTCATCACTT----------------------------GGTGGATAG

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CTTA-AGTCCT-----------T-TGG-CGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TCATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGGATTT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6683.00	5937.00	155.00	20.00	571.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	1924.00	13.00	347.00	37.00	1527.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	1922.00	1222.00	289.00	17.00	394.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	1237.00	931.00	95.00	10.00	201.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	632.00	8.00	307.00	47.00	270.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	391.00	76.00	268.00	30.00	17.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	309.00	92.00	146.00	8.00	63.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	229.00	12.00	43.00	5.00	169.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	152.00	17.00	78.00	18.00	39.00
............................................................................................TTGAGCAAAATTTCAGGTG...................................................................	19	1	116.00	0.00	77.00	17.00	22.00
..........................................CGCGCCTGTATCTTGCTGAACC..................................................................................................................	22	1	107.00	0.00	11.00	0.00	96.00
.........................................TCGCGCCTGTATCTTGCTGA.....................................................................................................................	20	1	99.00	0.00	83.00	9.00	7.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	82.00	51.00	20.00	3.00	8.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGG..............................................................	23	1	79.00	1.00	8.00	3.00	67.00
............................................................................................TTGAGCAAAATTTCAGGTGTGC................................................................	22	1	61.00	0.00	54.00	6.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTG.................................................................	20	1	47.00	0.00	25.00	2.00	20.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	46.00	1.00	37.00	8.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGG................................................................	22	1	41.00	0.00	32.00	6.00	3.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	37.00	36.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	33.00	23.00	5.00	0.00	5.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	26.00	6.00	10.00	1.00	9.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	25.00	5.00	17.00	2.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	23.00	6.00	12.00	0.00	5.00
.........................................TCGCGCCTGTATCTTGCTGAA....................................................................................................................	21	1	22.00	0.00	17.00	0.00	5.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	21.00	2.00	12.00	3.00	4.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	19.00	19.00	0.00	0.00	0.00
.........................................TCGCGCCTGTATCTTGCTGG.....................................................................................................................	20	1	18.00	0.00	16.00	1.00	1.00
...........................................GCGCCTGTATCTTGCTGAACC..................................................................................................................	21	1	17.00	0.00	1.00	2.00	14.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	17.00	17.00	0.00	0.00	0.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	1	16.00	16.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	15.00	14.00	0.00	0.00	1.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	14.00	14.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	14.00	14.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTG...................................................................	18	1	14.00	0.00	6.00	1.00	7.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	13.00	10.00	1.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	13.00	11.00	0.00	0.00	2.00
.........................................TCTCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	12.00	0.00	2.00	0.00	10.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	1	11.00	10.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCTGGTGTGTGA..............................................................	24	1	11.00	11.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	10.00	10.00	0.00	0.00	0.00
............................................................................................TTAAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	10.00	10.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGG................................................................	21	1	10.00	0.00	8.00	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	9.00	4.00	4.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGC................................................................	21	1	9.00	0.00	8.00	1.00	0.00
.........................................TCTCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	8.00	0.00	7.00	0.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGC..............................................................	23	1	8.00	4.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	8.00	8.00	0.00	0.00	0.00
............................................................................................TTGAGCACAATTTCAGGTGTGTGA..............................................................	24	1	8.00	8.00	0.00	0.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	1	8.00	8.00	0.00	0.00	0.00
.........................................TCGCTCCTGTATCTTGCTGAACC..................................................................................................................	23	1	7.00	0.00	1.00	0.00	6.00
.........................................TCGCGCCTGCATCTTGCTGAACC..................................................................................................................	23	1	7.00	0.00	0.00	0.00	7.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	7.00	7.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGCGTGTGA..............................................................	23	1	7.00	7.00	0.00	0.00	0.00
...............................................................CGC-TGCCA-TCATGGCCAACGA-TCCGGT.....................................................................................	27	1	7.00	0.00	2.00	1.00	4.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	7.00	7.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTGA..............................................................	24	1	7.00	6.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	1	7.00	6.00	0.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	7.00	5.00	0.00	0.00	2.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAGT............................................................	25	1	6.00	1.00	0.00	0.00	5.00
............................................................................................TTGAGCAACATTTCAGGTGTGTGA..............................................................	24	1	6.00	6.00	0.00	0.00	0.00
.............................................................................................TGAGAAAAATTTCAGGTGTGTGA..............................................................	23	1	6.00	6.00	0.00	0.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTG...............................................................	23	1	6.00	6.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	6.00	6.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAC.............................................................	25	1	6.00	0.00	4.00	0.00	2.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	6.00	6.00	0.00	0.00	0.00
............................................................................................ATGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	6.00	0.00	0.00	0.00
.........................................TCGCGCCTGGATCTTGCTGAACC..................................................................................................................	23	1	6.00	0.00	1.00	0.00	5.00
.............................................................................................TGAGCAAAATTTCAGGGGTGTGA..............................................................	23	1	6.00	4.00	2.00	0.00	0.00
..............................................................................................GAGCAAAATTTCAGGTGTGTGA..............................................................	22	1	6.00	6.00	0.00	0.00	0.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	6.00	0.00	0.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAACA..................................................................................................................	23	1	6.00	0.00	3.00	1.00	2.00
.........................................TCGCGCCTGTATCTTGCTGAAA...................................................................................................................	22	1	6.00	0.00	5.00	1.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	1	5.00	5.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	1	5.00	5.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	1	5.00	2.00	0.00	0.00	3.00
................................................................GC-TGCCA-TCATGGCCAACGA-TCCGG......................................................................................	25	1	5.00	2.00	0.00	0.00	3.00
.........................................TCGCGCCCGTATCTTGCTGAACC..................................................................................................................	23	1	5.00	0.00	1.00	0.00	4.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAAT............................................................	25	1	5.00	0.00	2.00	0.00	3.00
.........................................TCGCGCCTGTATCTTGCTGAACT..................................................................................................................	23	1	5.00	0.00	3.00	0.00	2.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTTA..............................................................	23	1	5.00	5.00	0.00	0.00	0.00
............................................................................................GTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	5.00	5.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGCGTGA..............................................................	23	1	5.00	5.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	1	4.00	3.00	0.00	0.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAC.............................................................	24	1	4.00	1.00	0.00	0.00	3.00
.............................................................................................TGAGCAAAATTTCATGTGTGTGA..............................................................	23	1	4.00	4.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAAA............................................................	25	1	4.00	0.00	3.00	0.00	1.00
.........................................TCCCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	4.00	0.00	2.00	0.00	2.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	4.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGT................................................................	22	1	4.00	0.00	3.00	0.00	1.00
............................................................................................TTGAGCAAAATGTCAGGTGTGTGA..............................................................	24	1	4.00	4.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGTTGTGTGA..............................................................	23	1	4.00	0.00	1.00	0.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	4.00	0.00	2.00	0.00	2.00
.........................................TCGCGCCTTTATCTTGCTGAACC..................................................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGT................................................................	22	1	4.00	2.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	4.00	4.00	0.00	0.00	0.00
..........................................TCCGCCTGTATCTTGCTGAACC..................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
............................................................................................TTGAGTAAAATTTCAGGTGTGTG...............................................................	23	1	3.00	3.00	0.00	0.00	0.00
.............................................................................................TTAGCAAAATTTCAGGTG...................................................................	18	1	3.00	0.00	0.00	0.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTTTG.................................................................	21	1	3.00	0.00	1.00	1.00	1.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTG...............................................................	23	1	3.00	3.00	0.00	0.00	0.00

droSec1

ACCA-AGTCCT-----------T-TGG-CGGCACATTTCATTCGCGCCTGTATCTTGCTGAACCGC-TGCCA-TCATGGCCAACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATGTGTTTAGCATTCATC--------------------------------GGAGGATTT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	18964.00	4012.00	12194.00	2758.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	6067.00	2222.00	2110.00	1735.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	5082.00	2886.00	258.00	1938.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	3274.00	646.00	1921.00	707.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	868.00	447.00	69.00	352.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	802.00	304.00	174.00	324.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	706.00	352.00	41.00	313.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	239.00	113.00	7.00	119.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	184.00	2.00	182.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	167.00	82.00	6.00	79.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	136.00	69.00	6.00	61.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	123.00	33.00	72.00	18.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTGA..............................................................	22	1	106.00	5.00	97.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	103.00	27.00	57.00	19.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	100.00	47.00	34.00	19.00
............................................................................................TTGAGCxAAATTTCAGGTGTGTGA..............................................................	23	1	75.00	3.00	70.00	2.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	74.00	6.00	60.00	8.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	56.00	8.00	35.00	13.00
............................................................................................TTGAGTAAAATTTCAGGTGTGTGA..............................................................	24	1	54.00	0.00	52.00	2.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	49.00	15.00	34.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	1	47.00	31.00	13.00	3.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	39.00	9.00	26.00	4.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	37.00	7.00	20.00	10.00
............................................................................................TTGAGCAAAAATTCAGGTGTGTGA..............................................................	24	1	37.00	2.00	34.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTATGTGA..............................................................	24	1	35.00	31.00	3.00	1.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	35.00	6.00	25.00	4.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	1	35.00	2.00	31.00	2.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	33.00	12.00	13.00	8.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	31.00	6.00	21.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	1	29.00	22.00	5.00	2.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	1	28.00	0.00	21.00	7.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	26.00	16.00	2.00	8.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTG...............................................................	21	1	26.00	2.00	20.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTCTGT................................................................	22	1	26.00	24.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	26.00	6.00	18.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTATGT................................................................	22	1	24.00	23.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	23.00	6.00	15.00	2.00
.............................................................................................TGAGCAAAATTTCAGGTGTG.................................................................	20	1	21.00	5.00	2.00	14.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	19.00	16.00	0.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	19.00	2.00	9.00	8.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAG.............................................................	24	1	19.00	1.00	15.00	3.00
............................................................................................TTGACCAAAATTTCAGGTGTGTGA..............................................................	24	1	19.00	2.00	17.00	0.00
............................................................................................TTGAGCAAAACTTCAGGTGTGTGA..............................................................	24	1	18.00	4.00	12.00	2.00
............................................................................................TTGAGCAAAATTTCGTGTGTGTGA..............................................................	24	1	18.00	2.00	16.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	1	18.00	2.00	15.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	18.00	7.00	3.00	8.00
............................................................................................TTGAGCAAAATTTCTGGTGTGTGA..............................................................	24	1	18.00	2.00	16.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	17.00	0.00	15.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGCGT................................................................	22	1	16.00	9.00	1.00	6.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	16.00	3.00	10.00	3.00
..............................................................................................GAGCAAAATTTCAGGTGTGTGA..............................................................	22	1	16.00	5.00	8.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTxTGTGA..............................................................	23	2	8.00	0.50	7.50	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	1	15.00	3.00	9.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTG...............................................................	23	1	15.00	7.00	2.00	6.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTG...............................................................	23	1	15.00	10.00	5.00	0.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	1	14.00	1.00	11.00	2.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	14.00	8.00	6.00	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	14.00	3.00	10.00	1.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	1	13.00	0.00	11.00	2.00
............................................................................................TTGAGCAAAATTTCATGTGTGTGA..............................................................	24	1	13.00	2.00	9.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTATGTG...............................................................	23	1	13.00	12.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGT................................................................	22	1	13.00	11.00	0.00	2.00
.............................................................................................TGAGCAAAATTTCAGGTGTGA................................................................	21	1	13.00	2.00	9.00	2.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTGA..............................................................	24	1	13.00	2.00	11.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTC...............................................................	23	1	12.00	3.00	4.00	5.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	12.00	1.00	8.00	3.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	12.00	3.00	7.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTTTGT................................................................	22	1	12.00	11.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGC................................................................	22	1	12.00	9.00	0.00	3.00
.............................................................................................TGAGCxxAATTTCAGGTGTGTGA..............................................................	21	1	12.00	0.00	11.00	1.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTG...............................................................	23	1	12.00	4.00	6.00	2.00
............................................................................................TTGAGCAAAAxTTCAGGTGTGTGA..............................................................	23	1	12.00	2.00	9.00	1.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTG...............................................................	23	1	12.00	2.00	8.00	2.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	12.00	2.00	8.00	2.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTG...............................................................	23	1	11.00	2.00	1.00	8.00
............................................................................................TTCAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	11.00	2.00	8.00	1.00
............................................................................................TTGATCAAAATTTCAGGTGTGTGA..............................................................	24	1	11.00	1.00	8.00	2.00
............................................................................................TTGAGCxAAATTTCAGGTGTGTG...............................................................	22	1	11.00	1.00	8.00	2.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	11.00	2.00	6.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAG.............................................................	25	1	11.00	1.00	9.00	1.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	1	11.00	4.00	7.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTGA..............................................................	24	1	11.00	2.00	8.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAAA............................................................	25	1	10.00	2.00	6.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTA...............................................................	23	1	10.00	4.00	4.00	2.00
.............................................................................................TTAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	10.00	0.00	8.00	2.00
............................................................................................TTGAGCAAAATTTCACGTGTGTGA..............................................................	24	1	10.00	3.00	5.00	2.00
............................................................................................TTGAGCAAAATTTCAxGTGTGTGA..............................................................	23	2	5.00	0.50	4.50	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGTGA..............................................................	24	1	10.00	4.00	6.00	0.00
............................................................................................TTGAGCxxAATTTCAGGTGTGT................................................................	20	1	10.00	5.00	1.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAAA............................................................	26	1	10.00	2.00	7.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	10.00	3.00	5.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGTT.............................................................	25	1	9.00	6.00	1.00	2.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	9.00	3.00	5.00	1.00
.............................................................................................TGAGTAAAATTTCAGGTGTGTGA..............................................................	23	1	9.00	0.00	8.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTGA..............................................................	24	1	9.00	2.00	7.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	1	9.00	7.00	0.00	2.00
............................................................................................TTGAGTAAAATTTCAGGTGTGTG...............................................................	23	1	8.00	1.00	6.00	1.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTG...............................................................	23	1	8.00	2.00	2.00	4.00
............................................................................................TTGAGCAAAATTTCCGGTGTGT................................................................	22	1	8.00	6.00	0.00	2.00

droYak2

TCCA-AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTATGGTCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC--------------------------------GGAGGATTT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6376.00	2419.00	159.00	3398.00	384.00	16.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	1949.00	482.00	69.00	1254.00	134.00	10.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	996.00	16.00	58.00	767.00	150.00	5.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	631.00	313.00	21.00	247.00	47.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	357.00	6.00	8.00	297.00	45.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	150.00	13.00	5.00	109.00	17.00	6.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	127.00	37.00	8.00	61.00	18.00	3.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	115.00	10.00	0.00	1.00	0.00	104.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	66.00	1.00	4.00	47.00	12.00	2.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	62.00	2.00	0.00	1.00	0.00	59.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	45.00	6.00	2.00	31.00	6.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	37.00	5.00	0.00	28.00	3.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	36.00	0.00	3.00	30.00	3.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	34.00	1.00	4.00	23.00	5.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	31.00	2.00	4.00	19.00	6.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	23.00	5.00	0.00	18.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	17.00	7.00	0.00	3.00	7.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	16.00	2.00	1.00	9.00	4.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	15.00	2.00	2.00	2.00	9.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGTT.............................................................	25	1	13.00	0.00	0.00	12.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	12.00	1.00	3.00	6.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	12.00	5.00	0.00	5.00	2.00	0.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	1	9.00	5.00	1.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGT................................................................	22	1	9.00	0.00	1.00	7.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	9.00	5.00	0.00	3.00	1.00	0.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	8.00	4.00	1.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTG...............................................................	23	1	8.00	3.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	8.00	3.00	0.00	0.00	2.00	3.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	1	8.00	4.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTG...................................................................	19	1	8.00	0.00	0.00	1.00	0.00	7.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	7.00	4.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGAGTGA..............................................................	24	1	7.00	1.00	0.00	6.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	7.00	1.00	0.00	1.00	5.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTGA..............................................................	24	1	7.00	2.00	0.00	3.00	2.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	2.00	0.00	3.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	6.00	6.00	0.00	0.00	0.00	0.00
............................................................................................TTGAGCACAATTTCAGGTGTGTGA..............................................................	24	1	6.00	1.00	0.00	4.00	1.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	6.00	3.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	1	6.00	0.00	1.00	4.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGATT............................................................	26	1	5.00	0.00	0.00	5.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	5.00	0.00	1.00	3.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTG...............................................................	23	1	5.00	0.00	1.00	1.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	1	5.00	0.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	5.00	1.00	0.00	4.00	0.00	0.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	1	5.00	3.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTG...............................................................	23	1	5.00	0.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGTGTGTGTGA..............................................................	24	1	5.00	0.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGT..............................................................	24	1	5.00	1.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	5.00	2.00	0.00	2.00	1.00	0.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	1	5.00	3.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTGA..............................................................	24	1	5.00	2.00	1.00	0.00	2.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	2.00	0.00	0.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTATGTGA..............................................................	24	1	4.00	2.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTG...............................................................	23	1	4.00	1.00	0.00	1.00	2.00	0.00
............................................................................................TTGAGTAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	2.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	4.00	1.00	1.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	4.00	0.00	0.00	2.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAAGTGTGTGA..............................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
............................................................................................TTAAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	1.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTATGA..............................................................	24	1	4.00	2.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTG...............................................................	23	1	4.00	2.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTGA..............................................................	22	1	4.00	0.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAAA............................................................	26	1	4.00	0.00	0.00	3.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	4.00	0.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTG...............................................................	23	1	4.00	2.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCTGGTGTGTGA..............................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
............................................................................................TTGAGCAACATTTCAGGTGTGTGA..............................................................	24	1	3.00	1.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
.............................................................................................TGAGAAAAATTTCAGGTGTGTGA..............................................................	23	1	3.00	2.00	1.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGT................................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	1.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTAA..............................................................	24	1	3.00	1.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTG...............................................................	23	1	3.00	0.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCG...............................................................	23	1	3.00	0.00	0.00	2.00	1.00	0.00
.........................................TCTCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	1.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCATAATTTCAGGTGTGTGA..............................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTTTGA..............................................................	23	1	3.00	1.00	1.00	1.00	0.00	0.00
............................................................................................TTGAGCAACATTTCAGGTGTGTG...............................................................	23	1	3.00	1.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTATGTG...............................................................	23	1	3.00	0.00	1.00	1.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTG...................................................................	18	1	3.00	0.00	0.00	0.00	0.00	3.00
.............................................................................................TGCGCAAAATTTCAGGTGTGTGA..............................................................	23	1	3.00	2.00	0.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTGA..............................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGC................................................................	22	1	3.00	0.00	0.00	1.00	0.00	2.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTGT..............................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGT................................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAG.............................................................	25	1	3.00	1.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTG...............................................................	23	1	3.00	2.00	0.00	0.00	1.00	0.00
............................................................................................TTGCGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGTG...............................................................	23	1	3.00	0.00	0.00	0.00	3.00	0.00

droEre2

CACG-AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCA-TTATGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTTAGCATTCATC--------------------------------GGACGATTT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	12529.00	3094.00	346.00	0.00	9089.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	5486.00	694.00	187.00	0.00	4605.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	2415.00	54.00	133.00	0.00	2228.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	1831.00	535.00	61.00	0.00	1235.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	789.00	25.00	42.00	0.00	722.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	735.00	13.00	18.00	0.00	704.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	546.00	60.00	28.00	0.00	458.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	193.00	67.00	2.00	0.00	124.00
............................................................................................TTGAGCAAAATTTCATGTGTGTGA..............................................................	24	1	124.00	25.00	1.00	0.00	98.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	118.00	2.00	8.00	0.00	108.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	109.00	7.00	0.00	0.00	102.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	94.00	7.00	2.00	0.00	85.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	85.00	6.00	3.00	0.00	76.00
............................................................................................TTGATCAAAATTTCAGGTGTGTGA..............................................................	24	1	78.00	6.00	0.00	0.00	72.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	78.00	1.00	3.00	0.00	74.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	77.00	0.00	1.00	0.00	76.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTAA..............................................................	24	1	75.00	2.00	1.00	0.00	72.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	72.00	16.00	2.00	0.00	54.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTCA..............................................................	24	1	71.00	3.00	1.00	0.00	67.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	58.00	23.00	5.00	0.00	30.00
............................................................................................TTGAGCAAAATTTCATGTGTGTG...............................................................	23	1	56.00	2.00	0.00	0.00	54.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	1	55.00	18.00	0.00	0.00	37.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTG...............................................................	23	1	55.00	1.00	0.00	0.00	54.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	45.00	17.00	1.00	0.00	27.00
............................................................................................TTGATCAAAATTTCAGGTGTGTG...............................................................	23	1	43.00	3.00	0.00	0.00	40.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTGA..............................................................	24	1	43.00	11.00	2.00	0.00	30.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	41.00	13.00	1.00	0.00	27.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	41.00	2.00	0.00	0.00	39.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTC...............................................................	23	1	38.00	0.00	0.00	0.00	38.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	37.00	2.00	1.00	0.00	34.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	34.00	3.00	3.00	0.00	28.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTA...............................................................	23	1	32.00	1.00	1.00	0.00	30.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTG...............................................................	23	1	31.00	5.00	4.00	0.00	22.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	31.00	5.00	1.00	0.00	25.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	30.00	8.00	1.00	0.00	21.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	29.00	11.00	4.00	0.00	14.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	27.00	1.00	4.00	0.00	22.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	1	26.00	5.00	1.00	0.00	20.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTG...............................................................	23	1	25.00	13.00	0.00	0.00	12.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTG...............................................................	23	1	23.00	1.00	0.00	0.00	22.00
............................................................................................TTCAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	23.00	10.00	0.00	0.00	13.00
............................................................................................TTGAGCAAAATTTCATGTGTGT................................................................	22	1	23.00	0.00	1.00	0.00	22.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	23.00	11.00	1.00	0.00	11.00
............................................................................................TTTAGCAAAATTTCAGGTGTGT................................................................	22	1	22.00	0.00	0.00	0.00	22.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	22.00	7.00	1.00	0.00	14.00
.............................................................................................TGAGCAAAATTTCATGTGTGTGA..............................................................	23	1	21.00	6.00	0.00	0.00	15.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	21.00	7.00	1.00	0.00	13.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTG...............................................................	23	1	21.00	7.00	0.00	0.00	14.00
.............................................................................................TGAGCAAAATTTCAGGTGTG.................................................................	20	1	21.00	0.00	0.00	0.00	21.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	20.00	2.00	0.00	0.00	18.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	20.00	6.00	0.00	0.00	14.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	20.00	5.00	0.00	0.00	15.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	1	19.00	3.00	3.00	0.00	13.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	18.00	9.00	0.00	0.00	9.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTG...............................................................	23	1	18.00	0.00	0.00	0.00	18.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGC..............................................................	23	1	17.00	3.00	0.00	0.00	14.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	16.00	7.00	1.00	0.00	8.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTTA..............................................................	23	1	16.00	8.00	0.00	0.00	8.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	16.00	4.00	0.00	0.00	12.00
............................................................................................TTGAGCAAAATTTCAGGGGTGT................................................................	22	1	15.00	0.00	0.00	0.00	15.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGTT.............................................................	25	1	15.00	0.00	0.00	0.00	15.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	14.00	3.00	0.00	0.00	11.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTGA..............................................................	24	1	14.00	9.00	0.00	0.00	5.00
............................................................................................TTAAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	14.00	3.00	0.00	0.00	11.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	1	13.00	4.00	1.00	0.00	8.00
.............................................................................................TTAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	13.00	1.00	0.00	0.00	12.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	13.00	5.00	0.00	0.00	8.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTGA..............................................................	22	1	13.00	0.00	0.00	0.00	13.00
............................................................................................TTGACCAAAATTTCAGGTGTGTGA..............................................................	24	1	13.00	2.00	1.00	0.00	10.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	1	13.00	1.00	0.00	0.00	12.00
............................................................................................TTGAGCAAAACTTCAGGTGTGTGA..............................................................	24	1	12.00	4.00	1.00	0.00	7.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	12.00	5.00	0.00	0.00	7.00
............................................................................................TTGAGCAAAATTTAAGGTGTGT................................................................	22	1	12.00	0.00	0.00	0.00	12.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	1	12.00	1.00	0.00	0.00	11.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	1	12.00	6.00	0.00	0.00	6.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	1	11.00	5.00	0.00	0.00	6.00
............................................................................................TTGAGCAAAATTTCACGTGTGTGA..............................................................	24	1	11.00	4.00	0.00	0.00	7.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	1	11.00	6.00	0.00	0.00	5.00
............................................................................................TTGAGAAAAATTTCAGGTGTGT................................................................	22	1	11.00	1.00	1.00	0.00	9.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	11.00	0.00	0.00	0.00	11.00
.........................................TCGCGCCTGTATCTTGCTGA.....................................................................................................................	20	1	11.00	0.00	2.00	0.00	9.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGT................................................................	23	1	11.00	0.00	1.00	0.00	10.00
............................................................................................TTGCGCAAAATTTCAGGTGTGTGA..............................................................	24	1	11.00	5.00	0.00	0.00	6.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	1	10.00	4.00	0.00	0.00	6.00
............................................................................................TTGAGCAAAATTTCAAGTGTGTGA..............................................................	24	1	10.00	7.00	0.00	0.00	3.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTGA..............................................................	24	1	10.00	2.00	0.00	0.00	8.00
............................................................................................TTGAGCAAAATTTCATGTGTG.................................................................	21	1	9.00	0.00	1.00	0.00	8.00
............................................................................................TTGAGCAAAATTTCAGGTATGTGA..............................................................	24	1	9.00	3.00	0.00	0.00	6.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	9.00	7.00	0.00	0.00	2.00
.............................................................................................TGAGCAAAATTTCAGGTTTGTGA..............................................................	23	1	9.00	2.00	0.00	0.00	7.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTG...............................................................	23	1	9.00	4.00	0.00	0.00	5.00
.............................................................................................TTAGCAAAATTTCAGGTGTGTG...............................................................	22	1	9.00	0.00	0.00	0.00	9.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTG...............................................................	23	1	9.00	1.00	0.00	0.00	8.00
............................................................................................TTGATCAAAATTTCAGGTGTGT................................................................	22	1	9.00	0.00	0.00	0.00	9.00
............................................................................................TTGAGCAAAATTTCTGGTGTGTGA..............................................................	24	1	9.00	3.00	0.00	0.00	6.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTT..............................................................	24	1	8.00	0.00	0.00	0.00	8.00
............................................................................................TTGAGCAAAATTTCAGTTGTGT................................................................	22	1	8.00	0.00	0.00	0.00	8.00
............................................................................................TTGAGCAAAATTTCAGGTTTGT................................................................	22	1	8.00	2.00	1.00	0.00	5.00
.............................................................................................TGAGCAAAATTTAAGGTGTGTGA..............................................................	23	1	8.00	0.00	0.00	0.00	8.00
..............................................................................................GAGCAAAATTTCAGGTGTGTGA..............................................................	22	1	8.00	2.00	0.00	0.00	6.00
.............................................................................................TGAGAAAAATTTCAGGTGTGTGA..............................................................	23	1	8.00	0.00	0.00	0.00	8.00

droEug1

TTTA-AGTCCT-----------T-TAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TATTGGCCCAAGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATC--------------------------------GAAGGATTT

Size

Hit Count

Total Norm

droBia1

CCAA-AAATCC-----------T-AGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCA-CTTTGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCTTTCATC--------------------------------GAGGGATGA

Size

Hit Count

Total Norm

droTak1

TTAC-TTAAAT-----------T-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-CTTTGGCCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAACCATC--------------------------------GAGGGAT-T

Size

Hit Count

Total Norm

droEle1

AG----CTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGTTTACCA-TATTGGCCTTCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCAA------------------------------AAAAGTGT

Size

Hit Count

Total Norm

droRho1

TAC--AGTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TATTGGCCATCGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCATCCACGAAAGTGTTCTGGAAACGATATGGTACAAGGAGATCTT

Size

Hit Count

Total Norm

droFic1

CAAA-ACTCCT-----------T-TGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TGCCAATATTGGCCTACGA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCATTCAAC--------------------------------TGTAAA---

Size

Hit Count

Total Norm

droKik1

TTAT-AATCCT-----------TCGGG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TTTGGGCCTACAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AATGGGTTT

Size

Hit Count

Total Norm

droAna3

TG---AATCCTTT---------C-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCG-ATATGGCACAGAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AAAAGAT--	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6084.00	2367.00	2992.00	321.00	404.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	2860.00	1094.00	1496.00	123.00	147.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	2068.00	898.00	980.00	186.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	615.00	252.00	331.00	27.00	5.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	592.00	126.00	389.00	29.00	48.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	496.00	170.00	292.00	30.00	4.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	260.00	56.00	178.00	12.00	14.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	119.00	39.00	68.00	9.00	3.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	114.00	34.00	71.00	9.00	0.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	76.00	9.00	66.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTATGA..............................................................	24	1	53.00	28.00	25.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	52.00	14.00	32.00	6.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	45.00	14.00	31.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	43.00	7.00	15.00	0.00	21.00
............................................................................................TTTAGCAAAATTTCAGGTGTGT................................................................	22	1	35.00	5.00	30.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	35.00	18.00	14.00	1.00	2.00
............................................................................................TTGAGCAAAATTTCATGTGTGTGA..............................................................	24	1	33.00	8.00	18.00	0.00	7.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	32.00	14.00	13.00	3.00	2.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTG...............................................................	23	1	31.00	4.00	26.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	30.00	10.00	13.00	2.00	5.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTGA..............................................................	24	1	28.00	18.00	10.00	0.00	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGTGA..............................................................	24	1	24.00	8.00	14.00	1.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTG.................................................................	20	1	19.00	4.00	15.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTAT................................................................	22	1	18.00	7.00	10.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCATGTGTGTG...............................................................	23	1	18.00	5.00	12.00	0.00	1.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTG...............................................................	23	1	18.00	6.00	12.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTATG...............................................................	23	1	17.00	8.00	8.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	16.00	7.00	6.00	0.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTGA..............................................................	24	1	16.00	4.00	8.00	0.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	16.00	9.00	2.00	4.00	1.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTGA..............................................................	22	1	15.00	6.00	9.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	15.00	9.00	6.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	14.00	1.00	7.00	5.00	1.00
............................................................................................TTGAGAAAAATTTCAGGTGTGT................................................................	22	1	14.00	4.00	7.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGTT.............................................................	25	1	14.00	7.00	6.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTCT................................................................	22	1	13.00	6.00	7.00	0.00	0.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	13.00	1.00	12.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAAGTGTGTGA..............................................................	24	1	13.00	10.00	1.00	0.00	2.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTGA..............................................................	24	1	13.00	11.00	0.00	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTG...............................................................	23	1	12.00	2.00	7.00	0.00	3.00
............................................................................................TTGAGCAAAATTTCACGTGTGTGA..............................................................	24	1	12.00	9.00	1.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	12.00	4.00	8.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	12.00	2.00	4.00	0.00	6.00
............................................................................................TTGATCAAAATTTCAGGTGTGTG...............................................................	23	1	12.00	4.00	8.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCATGTGTGT................................................................	22	1	11.00	4.00	7.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	11.00	3.00	2.00	1.00	5.00
............................................................................................GTGAGCAAAGTTTCAGGTGTGT................................................................	22	1	10.00	0.00	0.00	10.00	0.00
.............................................................................................TTAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	10.00	0.00	10.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	10.00	3.00	3.00	1.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	10.00	3.00	6.00	0.00	1.00
............................................................................................TTGAGCAAAATATCAGGTGTGTGA..............................................................	24	1	10.00	9.00	0.00	0.00	1.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	10.00	4.00	6.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	1	9.00	2.00	6.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTATGT..............................................................	24	1	9.00	3.00	6.00	0.00	0.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	9.00	4.00	4.00	1.00	0.00
............................................................................................TTGCGCAAAATTTCAGGTGTGTGA..............................................................	24	1	9.00	8.00	0.00	1.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	1	8.00	5.00	3.00	0.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	8.00	4.00	0.00	4.00	0.00
............................................................................................TTGAGCAAAAATTCAGGTGTGTGA..............................................................	24	1	8.00	7.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTG...............................................................	23	1	8.00	2.00	2.00	1.00	3.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGT..............................................................	24	1	8.00	2.00	6.00	0.00	0.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	8.00	5.00	3.00	0.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTG.................................................................	21	1	8.00	3.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTG...............................................................	23	1	8.00	5.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTACAGGTGTGTGA..............................................................	24	1	8.00	8.00	0.00	0.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	7.00	1.00	2.00	4.00	0.00
............................................................................................TTGAGCAAAATATCAGGTGTGT................................................................	22	1	7.00	7.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	7.00	1.00	3.00	1.00	2.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTT...............................................................	23	1	6.00	1.00	5.00	0.00	0.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	0.00	3.00	1.00	2.00
............................................................................................TTCAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	1.00	4.00	1.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGT................................................................	22	1	6.00	4.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	6.00	3.00	2.00	0.00	1.00
............................................................................................TTGAGCAAAATTACAGGTGTGTG...............................................................	23	1	6.00	6.00	0.00	0.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	6.00	5.00	1.00	0.00	0.00
............................................................................................TTAAGCAAAATTTCAGGTGTGT................................................................	22	1	6.00	3.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTG...............................................................	23	1	6.00	4.00	1.00	0.00	1.00
............................................................................................TTGAGCAAAATTTAAGGTGTGT................................................................	22	1	6.00	0.00	5.00	1.00	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGT................................................................	22	1	6.00	4.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTG...............................................................	23	1	6.00	1.00	4.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGCGTGT................................................................	22	1	6.00	2.00	1.00	2.00	1.00
............................................................................................CTGAGCAAAATTTCAGGTGTGT................................................................	22	1	6.00	3.00	2.00	1.00	0.00
............................................................................................TAGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	5.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAACTTCAGGTGTGTGA..............................................................	24	1	5.00	3.00	1.00	0.00	1.00
.............................................................................................TTAGCAAAATTTCAGGTGTGTG...............................................................	22	1	5.00	1.00	4.00	0.00	0.00
............................................................................................TTGAGCAACATTTCAGGTGTGTGA..............................................................	24	1	5.00	3.00	0.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	1	5.00	0.00	2.00	3.00	0.00
............................................................................................TTGAGCAAAATATCAGGTGTGTG...............................................................	23	1	5.00	5.00	0.00	0.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTG...............................................................	23	1	5.00	2.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAAGTGTGT................................................................	22	1	5.00	4.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAACTTCAGGTGTGTG...............................................................	23	1	5.00	3.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGT................................................................	22	1	5.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	5.00	3.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTG...............................................................	23	1	5.00	3.00	1.00	0.00	1.00
............................................................................................TTTAGCAAAATTTCAGGTGTG.................................................................	21	1	5.00	0.00	5.00	0.00	0.00
............................................................................................TCGAGCAAAATTTCAGGTGTGT................................................................	22	1	5.00	1.00	1.00	3.00	0.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	5.00	0.00	4.00	0.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTT...............................................................	22	1	5.00	0.00	5.00	0.00	0.00
............................................................................................TTGAACAAAATTTCAGGTGTGTG...............................................................	23	1	5.00	2.00	2.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGT..................................................................	19	1	5.00	1.00	3.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGT................................................................	22	1	5.00	1.00	4.00	0.00	0.00

droBip1

TGAAGAATCCTTT---------C-AAG-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-ATGTGGCACACAA-TCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCATC--------------------------------AAATGAT--

Size

Hit Count

Total Norm

dp4

TCCT-A--CCG-----------TGTGC-TGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCA-TAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC--------------------------------AC-------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	5928.00	2413.00	2998.00	517.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	1866.00	1490.00	140.00	235.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	1742.00	993.00	536.00	213.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	1054.00	390.00	571.00	93.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	737.00	498.00	133.00	104.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	200.00	148.00	30.00	22.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	200.00	121.00	49.00	30.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	148.00	127.00	10.00	11.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	102.00	79.00	2.00	20.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	40.00	34.00	2.00	4.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	27.00	16.00	10.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	23.00	21.00	1.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	20.00	4.00	16.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	19.00	3.00	16.00	0.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	17.00	0.00	12.00	5.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTG.................................................................	20	1	17.00	12.00	1.00	4.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	17.00	3.00	11.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	14.00	6.00	8.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	14.00	7.00	4.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	13.00	1.00	12.00	0.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	13.00	3.00	10.00	0.00	0.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	1	12.00	3.00	8.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	12.00	3.00	9.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	12.00	8.00	3.00	1.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	12.00	5.00	3.00	3.00	1.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	1	11.00	4.00	7.00	0.00	0.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	10.00	0.00	10.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	10.00	2.00	6.00	2.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	10.00	5.00	3.00	2.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	10.00	1.00	9.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	10.00	9.00	1.00	0.00	0.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	1	9.00	5.00	3.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	9.00	0.00	7.00	2.00	0.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTGA..............................................................	24	1	9.00	2.00	6.00	1.00	0.00
.............................................................................................TGAGAAAAATTTCAGGTGTGTGA..............................................................	23	1	8.00	0.00	7.00	1.00	0.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	8.00	2.00	5.00	1.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	8.00	0.00	7.00	1.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	1	7.00	2.00	4.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	7.00	3.00	3.00	1.00	0.00
............................................................................................TTGAGCxAAATTTCAGGTGTGTGA..............................................................	23	1	7.00	7.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	6.00	1.00	4.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTG...............................................................	23	1	6.00	3.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	6.00	4.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	1	6.00	0.00	4.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGT................................................................	22	1	6.00	4.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	6.00	2.00	4.00	0.00	0.00
............................................................................................TTGCGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	1.00	4.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	5.00	2.00	2.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	5.00	3.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCATGTGTGTGA..............................................................	24	1	5.00	2.00	3.00	0.00	0.00
............................................................................................TTGAGCACAATTTCAGGTGTGTGA..............................................................	24	1	5.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTGA..............................................................	24	1	5.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	1	5.00	1.00	3.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTGA..............................................................	24	1	5.00	1.00	4.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAG.............................................................	24	1	5.00	0.00	4.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCTGGTGTGTGA..............................................................	24	1	5.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTCT................................................................	22	1	4.00	4.00	0.00	0.00	0.00
............................................................................................TTGAGCAACATTTCAGGTGTGTGA..............................................................	24	1	4.00	1.00	3.00	0.00	0.00
............................................................................................TTCAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	1.00	1.00	2.00	0.00
............................................................................................TTGAGCAAAAGTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCCAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	1.00	3.00	0.00	0.00
............................................................................................TTAAGCAAAATTTCAGGTGTGT................................................................	22	1	4.00	1.00	1.00	2.00	0.00
............................................................................................TTGAGCTAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	4.00	0.00	0.00
............................................................................................TTAAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTATGA..............................................................	24	1	4.00	0.00	3.00	1.00	0.00
...........................................................................................GTTGAGCAAAATTTCAGGTGTGTG...............................................................	24	1	4.00	1.00	3.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGGGTGTGA..............................................................	23	1	4.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTGAGGTGTGTGA..............................................................	24	1	4.00	2.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAG.............................................................	25	1	4.00	2.00	2.00	0.00	0.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGT................................................................	23	1	4.00	2.00	0.00	2.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	4.00	2.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGGGA..............................................................	24	1	4.00	2.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTAA..............................................................	24	1	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTG...............................................................	23	1	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTG...............................................................	21	1	3.00	3.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTA...............................................................	23	1	3.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCG...............................................................	23	1	3.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGTT.............................................................	25	1	3.00	3.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGCGTGTGA..............................................................	23	1	3.00	0.00	2.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGC..............................................................	23	1	3.00	1.00	0.00	2.00	0.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGT................................................................	22	1	3.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTG...............................................................	23	1	3.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTG...............................................................	23	1	3.00	2.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGT................................................................	22	1	3.00	3.00	0.00	0.00	0.00
............................................................................................ATGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTG...............................................................	23	1	3.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTGG..............................................................	24	1	3.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAACTTTCAGGCGTGTGA..............................................................	24	1	3.00	0.00	3.00	0.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	3.00	0.00	2.00	1.00	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGT................................................................	22	1	3.00	2.00	0.00	1.00	0.00
.............................................................................................TAAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGTGA..............................................................	24	1	3.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTG...............................................................	23	1	3.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTG...............................................................	23	1	3.00	1.00	2.00	0.00	0.00
..............................................................................................GAGCAAAATTTCAGGTGTGTGA..............................................................	22	1	3.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGTGTGTGTGA..............................................................	24	1	3.00	3.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGT..................................................................	19	1	3.00	1.00	0.00	2.00	0.00
............................................................................................GTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	2.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGCGTGA..............................................................	23	1	3.00	0.00	2.00	1.00	0.00

droPer1

TCCT-A--CCG-----------TGTGC-TGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-AGCCA-TAATGGTCTTTCATCCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTTAAGCAATCTTC-----------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3883.00	2131.00	566.00	360.00	808.00	18.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	2072.00	935.00	40.00	221.00	868.00	8.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	1175.00	632.00	193.00	123.00	220.00	7.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	840.00	1.00	4.00	1.00	2.00	832.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	685.00	294.00	130.00	53.00	202.00	6.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	506.00	217.00	50.00	68.00	167.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	286.00	186.00	9.00	21.00	70.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	189.00	0.00	0.00	1.00	3.00	185.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	166.00	73.00	26.00	20.00	46.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	107.00	43.00	1.00	11.00	52.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	107.00	35.00	0.00	14.00	58.00	0.00
..........................................CGCGCCTGTATCTTGCTGAACC..................................................................................................................	22	1	76.00	0.00	1.00	0.00	0.00	75.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	44.00	17.00	3.00	1.00	20.00	3.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	39.00	25.00	2.00	5.00	7.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAACCG.................................................................................................................	24	1	25.00	0.00	0.00	0.00	0.00	25.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	20.00	5.00	2.00	5.00	6.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	15.00	8.00	0.00	2.00	4.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTG...................................................................	19	1	13.00	0.00	0.00	1.00	4.00	8.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	12.00	0.00	2.00	0.00	10.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	12.00	6.00	2.00	3.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGT................................................................	22	1	11.00	0.00	0.00	0.00	11.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTG.................................................................	20	1	11.00	5.00	1.00	0.00	3.00	2.00
............................................................................................TGGAGCAAAATTTCAGGTGTGT................................................................	22	1	11.00	0.00	0.00	1.00	10.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	10.00	5.00	0.00	1.00	4.00	0.00
.........................................TCTCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	10.00	0.00	0.00	0.00	0.00	10.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	10.00	1.00	0.00	1.00	8.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	9.00	3.00	1.00	0.00	5.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	9.00	1.00	0.00	0.00	1.00	7.00
............................................................................................TTGAGCAAAATTTCAGGTGTGC................................................................	22	1	9.00	4.00	0.00	1.00	4.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	9.00	0.00	2.00	0.00	7.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAA....................................................................................................................	21	1	9.00	0.00	0.00	1.00	0.00	8.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	8.00	2.00	1.00	0.00	4.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGCGT................................................................	22	1	8.00	2.00	0.00	2.00	4.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	8.00	2.00	1.00	0.00	5.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGT................................................................	22	1	8.00	1.00	0.00	2.00	5.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAG.............................................................	24	1	8.00	6.00	1.00	0.00	1.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	7.00	2.00	0.00	0.00	4.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	7.00	1.00	0.00	1.00	5.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	6.00	2.00	1.00	1.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	6.00	0.00	0.00	1.00	5.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	6.00	4.00	1.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTG...............................................................	23	1	6.00	1.00	2.00	0.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	6.00	3.00	0.00	1.00	1.00	1.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	5.00	1.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	6.00	1.00	1.00	0.00	4.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	5.00	0.00	3.00	2.00	0.00	0.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	5.00	3.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTG...............................................................	23	1	5.00	2.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCG...............................................................	23	1	5.00	1.00	1.00	1.00	2.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGT................................................................	22	1	5.00	1.00	0.00	1.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGT................................................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	5.00	2.00	1.00	1.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGGGTGTGA..............................................................	23	1	5.00	2.00	1.00	0.00	2.00	0.00
............................................CGCCTGTATCTTGCTGAACC..................................................................................................................	20	1	5.00	0.00	0.00	0.00	0.00	5.00
............................................................................................TTGAGCAAAATTTCAGGTGGGT................................................................	22	1	5.00	1.00	0.00	0.00	4.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGT................................................................	22	1	5.00	3.00	0.00	0.00	2.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	1	5.00	1.00	2.00	1.00	1.00	0.00
.............................................................................................TGAGAAAAATTTCAGGTGTGTGA..............................................................	23	1	4.00	0.00	0.00	0.00	4.00	0.00
.........................................TCTCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	4.00	0.00	0.00	0.00	0.00	4.00
............................................................................................TTGAGCAGAATTTCAGGTGTGT................................................................	22	1	4.00	1.00	0.00	1.00	2.00	0.00
............................................................................................TTGAGCAAAATGTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTG...............................................................	23	1	4.00	1.00	1.00	0.00	2.00	0.00
.........................................TCGCGCCTGTATCTTGCTGA.....................................................................................................................	20	1	4.00	0.00	0.00	0.00	1.00	3.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	1	4.00	2.00	1.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAATGTCAGGTGTGT................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
............................................................................................TTAAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	1.00	1.00	2.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTG...............................................................	23	1	4.00	3.00	0.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAAxTTCAGGTGTGTGA..............................................................	23	1	4.00	4.00	0.00	0.00	0.00	0.00
.............................................GCCTGTATCTTGCTGAACC..................................................................................................................	19	1	4.00	0.00	0.00	0.00	0.00	4.00
............................................................................................TTGAGCxxAATTTCAGGTGTGT................................................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	2.00	1.00	0.00	1.00	0.00
............................................................................................TTGCGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	1.00	1.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGT................................................................	22	1	4.00	1.00	0.00	0.00	3.00	0.00
............................................................................................TTGCGCAAAATTTCAGGTGTGTG...............................................................	23	1	4.00	0.00	1.00	0.00	3.00	0.00
.........................................TCGCGCCTGTATGTTGCTGAACC..................................................................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
............................................................................................TTGAGGAAAATTTCAGGTGTGT................................................................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAAA............................................................	25	1	3.00	1.00	0.00	0.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	1	3.00	0.00	2.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAATCTCAGGTGTGT................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
............................................................................................TTGAGCAAAAGTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	0.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCATGTGTGT................................................................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCATGTGTG.................................................................	21	1	3.00	1.00	0.00	1.00	1.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGT................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
.........................................TCGCGCCTGTATCTTGCTTAACC..................................................................................................................	23	1	3.00	0.00	0.00	0.00	1.00	2.00
............................................................................................TTGAGGAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	1.00	2.00	0.00
.............................................................................................TGAGTAAAATTTCAGGTGTGTGA..............................................................	23	1	3.00	0.00	2.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGT....................................................................	18	1	3.00	0.00	0.00	2.00	1.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGG..............................................................	23	1	3.00	0.00	1.00	0.00	1.00	1.00
............................................................................................TTGAGCAAAATTTCACGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	0.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTG.................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.........................................TCGCGCCTGTATATTGCTGAACC..................................................................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
.........................................TCGCGCCTGGATCTTGCTGAACC..................................................................................................................	23	1	3.00	0.00	0.00	0.00	0.00	3.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGT................................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGTGA..............................................................	24	1	3.00	2.00	0.00	0.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGT................................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGTT.............................................................	24	1	3.00	3.00	0.00	0.00	0.00	0.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGT................................................................	23	1	3.00	0.00	0.00	1.00	2.00	0.00
............................................................................................GTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	1.00	0.00	0.00	2.00	0.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTGA..............................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
............................................................................................GTGAGCAAAATTTCAGGTGTGT................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00

droWil1

CCAA---TCAA--AATTAACATT-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCAATTGTGATCTTCATTTCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTGACGGTAACATC--------------------------------GTTGGAATA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	2	31569.50	762.50	28373.50	2414.00	19.50
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	2	9273.50	465.00	4730.50	4044.00	34.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	2	1747.50	39.00	1523.00	182.00	3.50
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	2	1023.50	287.50	298.50	420.50	17.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	2	387.00	14.50	151.00	218.00	3.50
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	2	325.00	48.00	114.00	162.00	1.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	2	321.00	0.00	132.00	3.00	186.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	2	298.50	20.50	51.50	216.50	10.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	2	138.00	3.00	128.50	6.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	2	134.00	2.00	122.00	10.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	2	83.00	3.50	70.50	9.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	2	66.00	0.50	26.00	0.50	39.00
............................................................................................TTGAGCAAAATTTCATGTGTGTGA..............................................................	24	2	64.50	1.00	61.00	2.50	0.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	2	60.50	0.50	56.50	3.50	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	2	60.00	0.50	46.00	13.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	2	54.50	0.00	51.00	3.50	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGTGA..............................................................	24	2	53.50	0.50	51.00	2.00	0.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	2	49.00	0.00	41.50	7.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	2	47.50	1.50	42.50	3.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	2	45.50	1.50	39.00	4.50	0.50
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	2	44.50	3.00	33.50	7.50	0.50
............................................................................................TTGAGCxxAATTTCAGGTGTGTGA..............................................................	22	2	43.00	0.50	41.00	1.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	2	39.50	0.00	32.00	7.50	0.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	2	37.00	1.50	29.00	6.50	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	2	35.00	1.00	19.00	15.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	2	34.50	0.50	27.50	3.00	3.50
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	2	33.50	0.00	31.00	2.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	2	33.00	0.50	30.50	2.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	2	32.50	1.50	28.50	2.50	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	2	31.50	1.00	28.50	2.00	0.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	2	30.50	1.00	24.00	5.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	2	30.00	0.00	9.50	19.50	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	2	29.50	0.00	27.50	1.50	0.50
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	2	29.50	0.50	27.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	2	29.00	5.50	8.00	15.50	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	2	29.00	7.00	8.00	14.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	2	27.00	1.00	23.50	2.00	0.50
............................................................................................TTGAGCAAAATTTCGTGTGTGTGA..............................................................	24	2	27.00	1.00	23.50	2.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	2	25.50	1.00	21.00	3.50	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	2	25.50	1.00	21.50	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	2	25.50	0.00	22.50	3.00	0.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	2	25.00	0.00	22.50	2.50	0.00
............................................................................................TTGAGCxAAATTTCAGGTGTGTGA..............................................................	23	2	24.50	0.00	22.00	2.50	0.00
............................................................................................TTGAGTAAAATTTCAGGTGTGTGA..............................................................	24	2	24.50	0.00	22.00	2.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTA...............................................................	23	2	24.50	1.50	13.50	9.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTGA..............................................................	24	2	24.50	0.50	24.00	0.00	0.00
............................................................................................TTGACCAAAATTTCAGGTGTGTGA..............................................................	24	2	24.00	0.00	22.50	1.50	0.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTGA..............................................................	24	2	23.50	1.00	18.50	4.00	0.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	2	23.00	1.00	18.00	4.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	2	22.00	0.50	10.50	10.50	0.50
............................................................................................TTAAGCAAAATTTCAGGTGTGTGA..............................................................	24	2	21.50	0.00	17.00	4.50	0.00
............................................................................................TTGAGCAAAACTTCAGGTGTGTGA..............................................................	24	2	21.00	0.50	15.50	5.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTGA..............................................................	24	2	21.00	1.00	18.50	1.50	0.00
............................................................................................TTCAGCAAAATTTCAGGTGTGTGA..............................................................	24	2	21.00	0.00	20.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGTGA..............................................................	24	2	20.50	0.00	16.50	4.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTATGA..............................................................	24	2	20.50	0.00	16.00	4.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTATGTGA..............................................................	24	2	20.50	0.00	16.50	4.00	0.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	2	19.00	0.00	18.50	0.50	0.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	2	19.00	0.00	13.50	5.50	0.00
.............................................................................................TTAGCAAAATTTCAGGTGTGTGA..............................................................	23	2	18.50	0.00	18.50	0.00	0.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTG...............................................................	23	2	18.00	0.00	5.00	13.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTG...............................................................	23	2	17.50	0.00	5.50	12.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTxTGTGA..............................................................	23	4	8.75	0.50	8.00	0.25	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	2	17.50	1.00	15.00	1.50	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	2	16.50	0.00	16.50	0.00	0.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTG...............................................................	23	2	16.00	0.50	4.50	11.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	2	16.00	2.00	6.00	8.00	0.00
............................................................................................TTGCGCAAAATTTCAGGTGTGTGA..............................................................	24	2	15.00	1.00	13.00	1.00	0.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	2	14.00	1.00	11.00	2.00	0.00
............................................................................................TTGAGCAACATTTCAGGTGTGTGA..............................................................	24	2	14.00	1.00	11.50	1.50	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTG...............................................................	23	2	13.50	0.00	5.50	8.00	0.00
............................................................................................TTGAGCAAAAxTTCAGGTGTGTGA..............................................................	23	2	13.50	0.00	12.00	1.50	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTG...............................................................	23	2	13.50	0.50	7.00	6.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	2	13.50	0.00	12.00	1.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTG...............................................................	23	2	13.00	1.00	6.50	5.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCG...............................................................	23	2	13.00	0.50	6.00	6.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTGA..............................................................	24	2	13.00	0.00	11.00	1.50	0.50
............................................................................................TTTAGCAAAATTTCAGGTGTGTG...............................................................	23	2	13.00	0.00	10.00	3.00	0.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTG...............................................................	24	2	13.00	0.00	8.50	4.50	0.00
............................................................................................TTGAGCAAAATTTCAAGTGTGTGA..............................................................	24	2	12.50	0.50	9.50	2.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTCA..............................................................	24	2	12.50	0.00	12.00	0.50	0.00
............................................................................................TTGAGCACAATTTCAGGTGTGTGA..............................................................	24	2	12.50	0.50	9.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTAA..............................................................	24	2	12.00	0.50	10.00	1.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTC...............................................................	23	2	11.00	1.00	2.50	7.50	0.00
............................................................................................TTGAGCAAAAATTCAGGTGTGTGA..............................................................	24	2	11.00	0.00	10.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCATGTGTGTG...............................................................	23	2	11.00	0.00	8.00	3.00	0.00
..............................................................................................GAGCAAAATTTCAGGTGTGTGA..............................................................	22	2	11.00	0.00	9.00	2.00	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGTG...............................................................	23	2	11.00	0.00	8.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCACGTGTGTGA..............................................................	24	2	11.00	0.50	9.50	1.00	0.00
............................................................................................TTAAGCAAAATTTCAGGTGTGTG...............................................................	23	2	10.00	0.00	3.50	6.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTG...............................................................	23	2	9.50	0.00	5.00	4.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTG...................................................................	19	2	9.50	0.00	1.50	1.00	7.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTG...............................................................	23	2	9.50	0.00	4.00	5.50	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGGGA..............................................................	24	2	9.00	0.00	6.00	3.00	0.00
............................................................................................ATGAGCAAAATTTCAGGTGTGTGA..............................................................	24	2	9.00	0.00	4.50	4.50	0.00
............................................................................................TTGAGCxxAATTTCAGGTGTGTG...............................................................	21	2	9.00	0.00	4.00	5.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	2	9.00	0.50	5.50	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTATG...............................................................	23	2	8.50	0.00	0.50	8.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTATGTG...............................................................	23	2	8.00	0.00	2.00	6.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTG...............................................................	23	2	8.00	0.00	4.50	3.50	0.00

droVir3

CT----ATCCC-----------T-TGGCCGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTGAGACATCTAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGT-----------------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	6242.00	3147.00	524.00	2563.00	2.00	6.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	3212.00	2379.00	659.00	137.00	4.00	33.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	2641.00	1592.00	281.00	749.00	6.00	13.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	796.00	274.00	77.00	439.00	2.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	376.00	268.00	66.00	29.00	2.00	11.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	275.00	208.00	36.00	31.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	189.00	100.00	28.00	57.00	0.00	4.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	152.00	1.00	0.00	1.00	47.00	103.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	119.00	70.00	42.00	4.00	1.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	73.00	2.00	2.00	69.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	73.00	60.00	13.00	0.00	0.00	0.00
............................................................................................GTGAGCAAAGTTTCAGGTGTGT................................................................	22	1	56.00	0.00	56.00	0.00	0.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	54.00	1.00	0.00	1.00	10.00	42.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	34.00	18.00	5.00	11.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	29.00	13.00	3.00	13.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	26.00	7.00	6.00	13.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	26.00	21.00	1.00	3.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	25.00	11.00	4.00	9.00	0.00	1.00
.........................................TCGCGCCTGTATCTTGCTGA.....................................................................................................................	20	1	24.00	0.00	0.00	0.00	8.00	16.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	22.00	14.00	6.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGC................................................................	22	1	20.00	5.00	4.00	0.00	5.00	6.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTGA..............................................................	24	1	19.00	0.00	0.00	19.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	19.00	10.00	4.00	4.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCATGTGTGTGA..............................................................	24	1	18.00	2.00	0.00	16.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	17.00	3.00	0.00	14.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	17.00	9.00	3.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	15.00	2.00	2.00	6.00	1.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	15.00	6.00	2.00	7.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGG................................................................	22	1	15.00	5.00	1.00	0.00	6.00	3.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	14.00	1.00	0.00	13.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTAA..............................................................	24	1	14.00	8.00	2.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGTGA..............................................................	24	1	13.00	8.00	0.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGT................................................................	22	1	12.00	6.00	5.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	1	12.00	0.00	0.00	12.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTG...................................................................	19	1	12.00	0.00	0.00	0.00	2.00	10.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	12.00	6.00	4.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	12.00	2.00	3.00	7.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	11.00	5.00	0.00	6.00	0.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	11.00	3.00	1.00	7.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	1	10.00	6.00	1.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	10.00	3.00	1.00	5.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTA...............................................................	23	1	10.00	8.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTG...............................................................	23	1	10.00	4.00	4.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	10.00	10.00	0.00	0.00	0.00	0.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	1	9.00	4.00	1.00	4.00	0.00	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGTGA..............................................................	24	1	9.00	2.00	0.00	7.00	0.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	1	9.00	4.00	1.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGT................................................................	22	1	9.00	4.00	5.00	0.00	0.00	0.00
............................................................................................TTGGGCAAAATTTCAGGTGTGTGA..............................................................	24	1	9.00	2.00	0.00	7.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCATGTGTGTG...............................................................	23	1	9.00	1.00	0.00	8.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGT................................................................	22	1	9.00	5.00	3.00	1.00	0.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTGA..............................................................	24	1	8.00	2.00	0.00	6.00	0.00	0.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	1	8.00	0.00	1.00	7.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTCA..............................................................	24	1	8.00	1.00	1.00	6.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	8.00	3.00	0.00	3.00	1.00	1.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	8.00	2.00	0.00	6.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTG...............................................................	23	1	8.00	1.00	1.00	6.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	8.00	2.00	1.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGT................................................................	22	1	7.00	6.00	1.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGCGT................................................................	22	1	7.00	4.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAACATTTCAGGTGTGTGA..............................................................	24	1	7.00	0.00	2.00	5.00	0.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGT................................................................	22	1	7.00	5.00	2.00	0.00	0.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGT................................................................	22	1	7.00	0.00	7.00	0.00	0.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	7.00	0.00	5.00	2.00	0.00	0.00
..............................................................................................GAGCAAAATTTCAGGTGTGTGA..............................................................	22	1	7.00	3.00	1.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCG...............................................................	23	1	6.00	2.00	2.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTGA..............................................................	24	1	6.00	1.00	1.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	6.00	4.00	0.00	2.00	0.00	0.00
.........................................TCGCGCCTGTATCTTGCTGG.....................................................................................................................	20	1	6.00	0.00	0.00	0.00	4.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTG...............................................................	23	1	6.00	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTG...............................................................	23	1	6.00	1.00	1.00	4.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTTA..............................................................	23	1	6.00	0.00	0.00	6.00	0.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	6.00	2.00	3.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGT................................................................	22	1	6.00	2.00	3.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTGA..............................................................	24	1	5.00	3.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGT................................................................	22	1	5.00	4.00	1.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	1	5.00	2.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAACTTCAGGTGTGTGA..............................................................	24	1	5.00	2.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGAAAAATTTCAGGTGTGT................................................................	22	1	5.00	3.00	2.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATCTCAGGTGTGTG...............................................................	23	1	5.00	1.00	0.00	4.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTG...............................................................	23	1	5.00	4.00	1.00	0.00	0.00	0.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGT................................................................	23	1	5.00	4.00	0.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCGTGTGTGTGA..............................................................	24	1	5.00	5.00	0.00	0.00	0.00	0.00
............................................................................................TTGAGCxxAATTTCAGGTGTGT................................................................	20	1	5.00	4.00	1.00	0.00	0.00	0.00
............................................................................................GTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	5.00	2.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTG...............................................................	23	1	5.00	2.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGAGA..............................................................	24	1	5.00	3.00	0.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	5.00	0.00	1.00	4.00	0.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAA....................................................................................................................	21	1	5.00	1.00	0.00	0.00	0.00	4.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	5.00	0.00	2.00	3.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGG..............................................................	23	1	5.00	2.00	1.00	0.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAxGTGTGT................................................................	21	2	2.50	2.50	0.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTT...............................................................	22	1	5.00	2.00	1.00	2.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTTTGA..............................................................	23	1	4.00	0.00	1.00	3.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTATGTGA..............................................................	23	1	4.00	1.00	0.00	3.00	0.00	0.00
............................................................................................TTGAGTAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	3.00	1.00	0.00	0.00	0.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGC..............................................................	23	1	4.00	1.00	1.00	1.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCATGTGTGT................................................................	22	1	4.00	1.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTTTT...............................................................	23	1	4.00	0.00	0.00	4.00	0.00	0.00
............................................................................................GTGAGCAAAATTTCAGGTGTGT................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00

droMoj3

------ATCCT-----------T-AGC-CGGCATCTTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACAA-TTGTCACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGTCTCATC--------------------------------AAAGCA---	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4667.00	2048.00	254.00	144.00	2221.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	2582.00	1774.00	446.00	277.00	85.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	1234.00	801.00	77.00	66.00	290.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	620.00	239.00	51.00	31.00	299.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	298.00	204.00	41.00	28.00	25.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	166.00	121.00	16.00	11.00	18.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	131.00	81.00	32.00	14.00	4.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	122.00	68.00	20.00	11.00	23.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	93.00	64.00	14.00	12.00	3.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	26.00	15.00	10.00	1.00	0.00
.........................................TCGCGCCTGTATCTTGCTGAACC..................................................................................................................	23	1	24.00	1.00	2.00	0.00	21.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	21.00	8.00	5.00	1.00	7.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	18.00	1.00	1.00	0.00	16.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTC...............................................................	23	1	17.00	13.00	3.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGG..............................................................	24	1	12.00	6.00	0.00	2.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	10.00	7.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	10.00	3.00	3.00	1.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	10.00	2.00	2.00	1.00	5.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	9.00	1.00	3.00	0.00	5.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	9.00	3.00	0.00	1.00	5.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGC..............................................................	24	1	9.00	0.00	0.00	0.00	9.00
............................................................................................TTGAGCAAAATTTCAGGTGCGTGA..............................................................	24	1	8.00	6.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	7.00	5.00	0.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCGGGTGTGTGA..............................................................	24	1	7.00	2.00	1.00	0.00	4.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	7.00	2.00	1.00	2.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	7.00	4.00	1.00	2.00	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGTGA..............................................................	24	1	7.00	6.00	0.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGGGTGT................................................................	22	1	7.00	2.00	3.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTGA..............................................................	24	1	6.00	4.00	0.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGC................................................................	22	1	6.00	3.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTGA..............................................................	24	1	6.00	2.00	0.00	0.00	4.00
.............................................................................................TGAGCAAAATTTCAGGTGTG.................................................................	20	1	6.00	2.00	1.00	3.00	0.00
............................................................................................TTGAGCxxAATTTCAGGTGTGT................................................................	20	1	6.00	5.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTTTGTGA..............................................................	24	1	6.00	4.00	0.00	0.00	2.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGT................................................................	23	1	6.00	1.00	3.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGATGTGT................................................................	22	1	6.00	3.00	1.00	2.00	0.00
............................................................................................TTTAGCAAAATTTCAGGTGTGT................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.............................................................................................TGAGAAAAATTTCAGGTGTGTGA..............................................................	23	1	5.00	0.00	0.00	0.00	5.00
............................................................................................TTGAGCAAAATTTCGGGTGTGT................................................................	22	1	5.00	1.00	2.00	2.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGGGTGA..............................................................	24	1	5.00	2.00	0.00	0.00	3.00
............................................................................................TGGAGCAAAATTTCAGGTGTGT................................................................	22	1	5.00	2.00	3.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGTTGTGTGA..............................................................	24	1	5.00	2.00	0.00	1.00	2.00
............................................................................................TTGAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	5.00	0.00	0.00	1.00	4.00
............................................................................................TTGAGCAAAATTTCAGTTGTGT................................................................	22	1	5.00	2.00	0.00	3.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGCGA..............................................................	24	1	5.00	1.00	1.00	1.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGCGT................................................................	22	1	5.00	1.00	3.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCATGTGTGTG...............................................................	23	1	5.00	5.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTATGA..............................................................	24	1	5.00	1.00	0.00	0.00	4.00
............................................................................................TTGAGCAAAATTTCATGTGTGTGA..............................................................	24	1	5.00	3.00	0.00	1.00	1.00
...........................................................................................CTTGAGCAAAATTTCAGGTGTGTGA..............................................................	25	1	4.00	2.00	1.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGCGTGT................................................................	22	1	4.00	2.00	1.00	1.00	0.00
............................................................................................TTGATCAAAATTTCAGGTGTGT................................................................	22	1	4.00	4.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	4.00	1.00	2.00	0.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTA...............................................................	23	1	4.00	4.00	0.00	0.00	0.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTG...............................................................	23	1	4.00	0.00	0.00	2.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGTT.............................................................	25	1	4.00	3.00	0.00	1.00	0.00
............................................................................................TTTAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	4.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGC..............................................................	24	1	4.00	0.00	0.00	0.00	4.00
............................................................................................TTGAGCAAAATTCCAGGTGTGT................................................................	22	1	4.00	1.00	3.00	0.00	0.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	0.00	0.00	4.00
............................................................................................TTAAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	4.00	0.00	0.00	0.00	4.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	3.00	1.00	0.00	1.00	1.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTG...............................................................	23	1	3.00	2.00	0.00	0.00	1.00
............................................................................................TCGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	0.00	3.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGG..............................................................	23	1	3.00	2.00	0.00	0.00	1.00
.........................................TCGCGCCTGTATCTTGCTGA.....................................................................................................................	20	1	3.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCGAAATTTCAGGTGTGT................................................................	22	1	3.00	2.00	0.00	1.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	3.00	1.00	0.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTATGTGA..............................................................	24	1	3.00	1.00	0.00	0.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGAGTGA..............................................................	24	1	3.00	3.00	0.00	0.00	0.00
............................................................................................TTGAGCAAAATGTCAGGTGTGT................................................................	22	1	3.00	0.00	2.00	1.00	0.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	3.00	1.00	0.00	1.00	1.00
............................................................................................TGGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	3.00	0.00	0.00	0.00	3.00
............................................................................................TTGAGTAAAATTTCAGGTGTGT................................................................	22	1	3.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTT..............................................................	24	1	3.00	2.00	1.00	0.00	0.00
............................................................................................TTGAGCAAAATTCCAGGTGTGTGA..............................................................	24	1	3.00	1.00	0.00	0.00	2.00
............................................................................................TTGAGAAAAATTTCAGGTGTGT................................................................	22	1	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGTAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	2.00	0.00	0.00	1.00
............................................................................................TTGAGCAAACTTTCAGGTGTGT................................................................	22	1	3.00	1.00	1.00	1.00	0.00
............................................................................................TTGAGCAAAATTTCAAGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	0.00	3.00
............................................................................................TTGAGCAAAATTTCAGATGTGTGA..............................................................	24	1	3.00	0.00	0.00	1.00	2.00
............................................................................................TTGCGCAAAATTTCAGGTGTGT................................................................	22	1	3.00	0.00	1.00	2.00	0.00
............................................................................................TTGAGCAAGATTTCAGGTGTGT................................................................	22	1	3.00	1.00	2.00	0.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	1.00	0.00	2.00
............................................................................................CTGAGCAAAATTTCAGGTGTGT................................................................	22	1	3.00	3.00	0.00	0.00	0.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	1	3.00	0.00	0.00	0.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTTTGT................................................................	22	1	3.00	3.00	0.00	0.00	0.00
............................................................................................TTGAGCAGAATTTCAGGTGTGT................................................................	22	1	3.00	0.00	0.00	3.00	0.00

droGri2

TT----ATCCT-----------T-GAC-CGGCATATTTCATTCGCGCCTGTATCTTGCTGAACCGT-TACCA-TTGTGACATCCAAATCCGGTTGAGCAAAATTTCAGGTGTGTGAGAAATTTGTAGCGGCTTCATCACTT----------------------------GGTGGATAG	Size	Hit Count	Total Norm	V109 Male body
............................................................................................TTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	470.00	470.00
............................................................................................TTGAGCAAAATTTCAGGTGTGT................................................................	22	1	230.00	230.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTG...............................................................	23	1	144.00	144.00
............................................................................................TTGAGCAAAATTTCAGGTGTG.................................................................	21	1	45.00	45.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGA..............................................................	23	1	42.00	42.00
.............................................................................................TGAGCAAAATTTCAGGTGTGT................................................................	21	1	7.00	7.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTCA..............................................................	24	1	7.00	7.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTG...............................................................	22	1	6.00	6.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTGA..............................................................	24	1	6.00	6.00
............................................................................................TTGAGCAAAATTTCAGGCGTGT................................................................	22	1	5.00	5.00
............................................................................................TTGAGCAAAATTTCAGGCGTGTG...............................................................	23	1	5.00	5.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGT..............................................................	24	1	4.00	4.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTGA..............................................................	24	1	4.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTTA..............................................................	24	1	4.00	4.00
............................................................................................TTGAGCAAAATTTCAGGTGTCTGA..............................................................	24	1	3.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAA.............................................................	25	1	3.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGT..................................................................	20	1	3.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTGAT.............................................................	25	1	3.00	3.00
............................................................................................TTGAGCAAAATTTCAGGTGTGA................................................................	22	1	3.00	3.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGT..............................................................	23	1	2.00	2.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAA.............................................................	24	1	2.00	2.00
............................................................................................TTGAGCCAAATTTCAGGTGTGTGA..............................................................	24	1	2.00	2.00
............................................................................................TTGAGCAACATTTCAGGTGTGTG...............................................................	23	1	2.00	2.00
............................................................................................TTGAGCTAAATTTCAGGTGTGTGA..............................................................	24	1	2.00	2.00
............................................................................................CTGAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	2.00	2.00
............................................................................................TTGAGCAAGATTTCAGGTGTGTGA..............................................................	24	1	2.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTA...............................................................	23	1	2.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTAA..............................................................	24	1	2.00	2.00
............................................................................................TTGAGCAAAATTTCAAGTGTG.................................................................	21	1	2.00	2.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTGA..............................................................	24	1	2.00	2.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTT...............................................................	23	1	2.00	2.00
............................................................................................TTGAACAAAATTTCAGGTGTGT................................................................	22	1	2.00	2.00
............................................................................................TTCAGCAAAATTTCAGGTGTGT................................................................	22	1	2.00	2.00
.............................................................................................TGAGCAAAATTTCAGGTCTGTGA..............................................................	23	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTG...................................................................	19	1	1.00	1.00
............................................................................................TTCAGCAAAATTTCAGGTGTGTG...............................................................	23	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGCGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAGTTTCAGGTGTGTCA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGGAAAATTTCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAATTCCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGAGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGCTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTAAGCAAAATTTCAGGTGTGT................................................................	22	1	1.00	1.00
.........................................TCGCGCCTGTATCTTGCTGAAC...................................................................................................................	22	1	1.00	1.00
............................................................................................TTGAACAAAATTTCAGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCxAAATTTCAGGTGTGTGA..............................................................	23	1	1.00	1.00
............................................................................................TTGAGCCAAATTTCAxGTGTGTGA..............................................................	23	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCTGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCCAAATTTCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTCT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTCTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTTAGCAAAATTTCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAACATTTCAGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAAAACTTCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCxGGTGTGTGA..............................................................	23	1	1.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGA................................................................	21	1	1.00	1.00
............................................................................................TTGAGCAAGATTTCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................GTGAGCAAAGTTTCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTCAGCAAAATTTCAGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAATATTTCAGGTGT..................................................................	20	1	1.00	1.00
............................................................................................TTGAGCAAACTTTCAGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAACATTTCAGGTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTAAGCAAAATTTCCGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGAGTGTG...............................................................	23	1	1.00	1.00
............................................................................................TTGAGCAAAATTTTAGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGTGTGTC...............................................................	23	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGCTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGAAAAATTTCAGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAACATTTCAGGTGTGA................................................................	22	1	1.00	1.00
............................................................................................TTGACCAAAATTTCAGGTGTGTGA..............................................................	24	1	1.00	1.00
.............................................................................................TGAGCAAAATTTCAGGTGTGTGAT.............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAAGTGTGTG...............................................................	23	1	1.00	1.00
............................................................................................TTAAGCAAAATTTCAGCTGTGT................................................................	22	1	1.00	1.00
............................................................................................TTGAGCAAAATTTAAGGTGTGTGA..............................................................	24	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCAGGGGTGTG...............................................................	23	1	1.00	1.00
............................................................................................TTGAGCGAAATTTCAGGTGTGTG...............................................................	23	1	1.00	1.00
............................................................................................TTGAGCAAAATTTCGTGTGTGTGA..............................................................	24	1	1.00	1.00

Generated: 04/20/2012 at 05:20:11 EDT

dme-mir-87

chr2L:9950418-9950516 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup