dme-mir-6-2- Best orthologs

dme-mir-6-2	chr2R:15548374-15548447 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 15548379-15548400
   star strand at position 15548418-15548440
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:15548359-15548462 -		1	T--AACCA---------------------TGCCG--TTTTTAACCCAAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSim1	chr2R:14253794-14253897 -	LASTZ	1	T--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSec1	super_1:13063092-13063195 -	LASTZ	1	T--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droYak2	chr2R:13624327-13624430 +	LASTZ	1	T--AACCA---------------------TACCG--TTTTTAACCGCAGGGAACCTCTGCTGCTGATATATTATTG-------------------------AGA----AACTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEre2	scaffold_4845:9748613-9748715 -	LASTZ	1	A--ACCCA---------------------TACCG--TTTTTAACCCCAGGGAACCTCTGCTGCTGATATATTATTG-------------------------A-A----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG
droEug1	scf7180000409474:2397387-2397490 +	LASTZ	4	C--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACCTCTGCTGTTGATATATAATCA-------------------------GGA----AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAT
droBia1	scf7180000302143:3059278-3059377 -	LASTZ	4	T--ATCTA---------------------TTCCG--TTCTCAACCCCAGGGAACTTCTGCTGCTGATATATTAACT-------------------------A-A----A---GCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droTak1	scf7180000415384:84590-84692 +	LASTZ	4	C--ACCCA---------------------TTCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------A-A----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEle1	scf7180000491201:2013437-2013539 -	LASTZ	4	T--ACCCA---------------------TTCCG--TTTTTAACCACAGGGAACTTCTGCTGCTGATATATTATCA-------------------------A-A----AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAG
droRho1	scf7180000780066:74210-74312 +	LASTZ	4	T--ACCAA---------------------GTCTG--TTTTTAACCACAGGGAACTTCTGCTGCTGATATATTATCG-------------------------A-A----AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAG
droFic1	scf7180000454039:847499-847601 -	LASTZ	4	C--ATCCA---------------------TTCCG--TTTTTAACCCTAGGGAACTTCTGCTGCTGATATATTATCG-------------------------A-A----AACTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAG
droKik1	scf7180000302679:88805-88907 -	LASTZ	4	T--TCTTC---------------------TACCG--TGGTTAGCCCCAGGGAACTGCTGCTGCTGATATATTATCA-------------------------A-G----AATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAG
droAna3	scaffold_13266:9731948-9732061 +	LASTZ	1	A--TATTA---------------------TTCCG--GTGTTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAA-A--------------AAA----ATCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC
droBip1	scf7180000396427:874897-875006 +	LASTZ	4	T--TATTA---------------------TTCCG--GTGTTAACCCCAGGGAACTGTTGCTGCTGATATATTATACT------TT-CG-------------A-A--CTATCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAA
dp4	chr3:12676931-12677045 -	LASTZ	1	T--CCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTT-T--------------G-A----CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droPer1	super_2:8906627-8906741 +	LASTZ	1	T--CCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTT-T--------------G-A----CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droWil1	scaffold_180701:1651131-1651259 -	LASTZ	1	T--TTTTA------A--A-----------GTTTT--TGTTTAACCGCAGGGAACTGTCGCTGCTGATATATA-----TATATTAT-TGTTATATATAATTTAAAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAA
droVir3	scaffold_12875:4112748-4112878 +	LASTZ	1	T--AAATATTTGCTGACAAATTTCTTATGTGCTA--TGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAGA----TTATAT-------------------CGATTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAA
droMoj3	scaffold_6496:20936121-20936236 -	LASTZ	1	T--ATCCA------GAGA-----------GATTG--CGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATATG----TATT-TGTC-----------A-G----TAC-TCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA
droGri2	scaffold_15112:2108071-2108181 -	LASTZ	1	TTCACCAA---------------------TGCTA--TGTTTAACCACAGGGAACTGCTGCTGCTGATATACAACCA-----TATT-T--------------ATA----CACGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	T--AACCA---------------------TGCCG--TTTTTAACCCAAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSim1	T--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSec1	T--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droYak2	T--AACCA---------------------TACCG--TTTTTAACCGCAGGGAACCTCTGCTGCTGATATATTATTG-------------------------AGA----AACTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEre2	A--ACCCA---------------------TACCG--TTTTTAACCCCAGGGAACCTCTGCTGCTGATATATTATTG-------------------------A-A----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG
droEug1	C--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACCTCTGCTGTTGATATATAATCA-------------------------GGA----AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAT
droBia1	T--ATCTA---------------------TTCCG--TTCTCAACCCCAGGGAACTTCTGCTGCTGATATATTAACT-------------------------A-A----A---GCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droTak1	C--ACCCA---------------------TTCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------A-A----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEle1	T--ACCCA---------------------TTCCG--TTTTTAACCACAGGGAACTTCTGCTGCTGATATATTATCA-------------------------A-A----AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAG
droRho1	T--ACCAA---------------------GTCTG--TTTTTAACCACAGGGAACTTCTGCTGCTGATATATTATCG-------------------------A-A----AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAG
droFic1	C--ATCCA---------------------TTCCG--TTTTTAACCCTAGGGAACTTCTGCTGCTGATATATTATCG-------------------------A-A----AACTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAG
droKik1	T--TCTTC---------------------TACCG--TGGTTAGCCCCAGGGAACTGCTGCTGCTGATATATTATCA-------------------------A-G----AATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAG
droAna3	A--TATTA---------------------TTCCG--GTGTTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAA-A--------------AAA----ATCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC
droBip1	T--TATTA---------------------TTCCG--GTGTTAACCCCAGGGAACTGTTGCTGCTGATATATTATACT------TT-CG-------------A-A--CTATCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAA
dp4	T--CCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTT-T--------------G-A----CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droPer1	T--CCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTT-T--------------G-A----CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droWil1	T--TTTTA------A--A-----------GTTTT--TGTTTAACCGCAGGGAACTGTCGCTGCTGATATATA-----TATATTAT-TGTTATATATAATTTAAAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAA
droVir3	T--AAATATTTGCTGACAAATTTCTTATGTGCTA--TGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAGA----TTATAT-------------------CGATTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAA
droMoj3	T--ATCCA------GAGA-----------GATTG--CGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATATG----TATT-TGTC-----------A-G----TAC-TCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA
droGri2	TTCACCAA---------------------TGCTA--TGTTTAACCACAGGGAACTGCTGCTGCTGATATACAACCA-----TATT-T--------------ATA----CACGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

T--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	2237.00	2.33	3.67	2.33	2228.67
....................................................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1354.33	1.00	3.67	3.00	1346.67
....................................................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	959.00	1.00	1.00	0.67	956.33
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	890.33	1.67	1.67	3.67	883.33
....................................................................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	329.67	0.00	0.00	1.33	328.33
....................................................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	131.33	3.00	0.00	0.33	128.00
....................................................................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	114.33	0.33	2.00	0.67	111.33
....................................................................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	44.00	0.00	0.00	0.00	44.00
....................................................................................................................TATCACAGTGGCTGGTTTTTTTG....................	23	2	52.00	0.00	0.00	0.00	52.00
....................................................................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	31.00	1.00	0.33	0.00	29.67
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	27.67	0.33	0.33	0.00	27.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	27.33	1.00	0.00	0.00	26.33
....................................................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	26.67	1.00	0.33	0.00	25.33
....................................................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	25.33	0.00	0.00	0.00	25.33
...............................................AGGGAACTTCTGCTGCTGATATA.........................................................................................	23	1	70.00	37.00	0.00	0.00	33.00
....................................................................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	3	18.00	0.00	0.00	0.00	18.00
...............................................AGGGAACTTCTGCTGCTGATAT..........................................................................................	22	1	53.00	21.00	0.00	0.00	32.00
....................................................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	16.33	1.00	0.00	0.00	15.33
....................................................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	13.00	3.00	0.00	0.00	10.00
....................................................................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	12.33	0.00	0.00	0.00	12.33
....................................................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	11.00	0.00	0.00	0.00	11.00
....................................................................................................................TATCACATTGGCTGGTCTTTTT.....................	22	3	10.67	0.00	0.00	0.00	10.67
...............................................AGGGAACTTCTGCTGCTGATA...........................................................................................	21	1	21.00	6.00	0.00	0.00	15.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	6.67	4.33	0.00	0.00	2.33
....................................................................................................................TATCACAGTGGCTGGTCTTTTTTG...................	24	2	10.00	0.00	0.00	0.00	10.00
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	6.33	4.00	0.00	0.00	2.33
....................................................................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	4.75	0.00	0.00	0.00	4.75
....................................................................................................................TATCACAGTGGCTGGTCTT........................	19	3	5.67	0.67	0.00	0.00	5.00
....................................................................................................................TATCACAGTGGCTGTTTTTTTTT....................	23	3	5.33	0.00	0.00	0.00	5.33
.....................................................................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	3	5.33	0.00	0.00	0.00	5.33
....................................................................................................................TATCACAGTGGCTGGTCTTTTTGT...................	24	2	7.00	0.00	0.00	0.00	7.00
....................................................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	4.33	0.00	0.00	0.00	4.33
....................................................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	3.25	0.00	0.00	0.00	3.25
....................................................................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	3	4.00	0.00	0.00	0.00	4.00
....................................................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	3.67	0.00	0.00	0.00	3.67
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	3.67	2.00	0.00	0.00	1.67
....................................................................................................................TATCACAGTGGCCGTTCTTTTTG....................	23	3	3.33	0.00	0.00	0.00	3.33
....................................................................................................................TATCACAGTGACTGTTCTTTTTG....................	23	3	3.00	0.00	0.00	0.00	3.00
....................................................................................................................TATCACAGTGGCTGTTTTTT.......................	20	4	2.00	0.00	0.00	0.00	2.00
....................................................................................................................TATCACAGTGGCTGGTCT.........................	18	3	2.67	0.00	0.00	0.00	2.67
....................................................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	2.67	2.00	0.00	0.00	0.67
....................................................................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	2.67	0.67	0.00	0.00	2.00
....................................................................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	2.67	0.00	0.33	0.00	2.33
....................................................................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	3	2.67	0.00	0.33	0.00	2.33
....................................................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	2.67	0.00	0.00	0.00	2.67
....................................................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	2.33	0.00	0.00	0.00	2.33
....................................................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	2.33	1.33	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	2.33	0.00	0.00	0.00	2.33
....................................................................................................................TATCACATTGGCTGTTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
....................................................................................................................TATCACAGTGGCTGGGCTTTT......................	21	3	2.33	0.33	0.00	0.00	2.00
.....................................................................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	3	2.00	0.00	0.00	0.00	2.00
....................................................................................................................TATCACAGTGGCTGGTATTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
....................................................................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	2.00	0.33	0.00	0.00	1.67
....................................................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
....................................................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
.....................................................................................................................ATCACAGTGGCTGGTCTTTT......................	20	3	2.00	0.00	0.00	0.00	2.00
....................................................................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.00	0.67	0.00	0.00	1.33
....................................................................................................................TATCACAGTGGCTCTTCTTTTTG....................	23	3	2.00	0.00	0.00	0.00	2.00
....................................................................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
....................................................................................................................TATCACACTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
....................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	3	1.67	0.00	0.00	0.00	1.67
......................................................................................................................TCACAGTGGCTGGTCTTTTT.....................	20	3	1.67	0.00	0.00	0.00	1.67
....................................................................................................................TATCACATTGGCTGTTCTTTTTT....................	23	3	1.67	0.00	0.00	0.00	1.67
....................................................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	1.25	0.25	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	1.67	0.00	0.00	0.00	1.67
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.67	1.33	0.00	0.00	0.33
....................................................................................................................TATCACAGTGGCTGGTGTT........................	19	3	1.33	1.00	0.00	0.00	0.33
....................................................................................................................TATCACGGTGGCTGTTCTTTTTG....................	23	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	3	1.33	1.00	0.00	0.00	0.33
.....................................................................................................................ATCACAGTGGCTGGTTTTTTT.....................	21	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCGCAGTGGCTGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACACTGGCTGTTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
....................................................................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCTxTTCTTTTTGT...................	23	2	1.50	0.00	0.00	0.00	1.50
....................................................................................................................TATCACGGTGGCTGTTCTTT.......................	20	3	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTCT.....................	22	3	1.00	0.67	0.00	0.00	0.33
....................................................................................................................TACCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGTCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
....................................................................................................................TATCACATTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCTGGCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGTTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
....................................................................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTGT......................	21	3	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TATCACAxTGGCTGTTCTTTTTG....................	22	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
...................................................................................................................CTATCACAGTGGCTGGTCTTTTT.....................	23	3	1.00	0.00	0.00	0.00	1.00
........................................................................................................................ACAGTGGCTGGTCTTTTT.....................	18	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCTGGTATTTTTG....................	23	2	1.50	0.00	0.00	0.00	1.50
...............................................AGGGAACTTCTGCTGCTGAT............................................................................................	20	1	3.00	2.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTTGCTGTTCTTTT......................	21	4	0.75	0.25	0.00	0.00	0.50
....................................................................................................................TATCACAGTGGCTGGTTTT........................	19	3	1.00	0.33	0.00	0.00	0.67

droSec1

T--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------AAA----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	4	19927.00	3.50	19730.50	193.00
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	4	5992.25	2.50	5955.25	34.50
....................................................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	4	1764.50	0.25	1744.75	19.50
....................................................................................................................TATCACAGTGGCTGTTCTTT.......................	20	4	1057.00	0.75	1047.50	8.75
....................................................................................................................TATCACAGTGGCTGTTCTTTTTGT...................	24	3	433.00	0.00	423.33	9.67
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	4	280.75	0.00	280.00	0.75
....................................................................................................................TATCACAGTGGCTGTTCTT........................	19	4	194.00	0.00	189.25	4.75
....................................................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	4	124.00	0.25	123.50	0.25
....................................................................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	4	94.25	0.00	92.00	2.25
........................................................................................................................ACAGTGGCTGTTCTTTTT.....................	18	4	84.00	0.00	83.50	0.50
....................................................................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	5	62.20	0.00	61.40	0.80
......................................................................................................................TATCAGTGGCTGTTCTTTTT.....................	20	4	75.75	0.00	75.50	0.25
....................................................................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	4	60.00	0.25	59.00	0.75
....................................................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	5	45.60	0.00	44.40	1.20
....................................................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	4	53.75	0.00	53.25	0.50
....................................................................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	4	52.00	0.00	52.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCT.........................	18	4	50.25	0.00	49.00	1.25
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	4	50.25	0.00	49.50	0.75
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	4	44.25	0.00	43.50	0.75
....................................................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	4	37.25	0.00	37.25	0.00
....................................................................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	4	36.25	0.00	35.75	0.50
.....................................................................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	4	32.25	0.00	32.00	0.25
....................................................................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	4	31.50	0.00	31.25	0.25
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	4	30.75	0.00	30.00	0.75
....................................................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	4	30.50	0.00	30.00	0.50
....................................................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	4	27.50	0.00	27.50	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTGA...................	24	4	27.00	0.00	27.00	0.00
....................................................................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	4	26.25	0.00	26.25	0.00
....................................................................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	4	25.00	0.00	24.50	0.50
....................................................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	4	24.25	0.00	23.75	0.50
....................................................................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	4	23.75	0.00	23.50	0.25
....................................................................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	4	23.50	0.00	23.50	0.00
....................................................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	5	18.40	0.00	18.20	0.20
....................................................................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	4	22.00	0.00	21.50	0.50
......................................................................................................................TATCAGTGGCTGTTCTTTT......................	19	4	21.75	0.00	21.25	0.50
....................................................................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	4	21.50	0.00	21.25	0.25
....................................................................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	4	21.25	0.00	21.25	0.00
....................................................................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	4	21.25	0.00	21.25	0.00
...................................................................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	4	21.00	0.00	21.00	0.00
....................................................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	4	19.75	0.00	19.75	0.00
....................................................................................................................TATCACAGTGGCTGATCTTTTT.....................	22	4	18.50	0.00	18.50	0.00
....................................................................................................................TATTACAGTGGCTGTTCTTTT......................	21	4	18.25	0.00	18.25	0.00
....................................................................................................................TATCACAGTGGCTGTTCCTTT......................	21	5	14.20	0.00	14.20	0.00
...............................................AGGGAACTTCTGCTGCTGATATA.........................................................................................	23	2	35.00	0.00	35.00	0.00
....................................................................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	4	17.50	0.00	17.50	0.00
....................................................................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	4	17.25	0.00	17.25	0.00
...............................................AGGGAACTTCTGCTGCTGATAT..........................................................................................	22	2	34.50	0.00	34.00	0.50
....................................................................................................................TATCACAGTGGCTxTTCTTTT......................	20	4	16.50	0.00	16.50	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTTT......................	21	5	13.00	0.00	12.80	0.20
....................................................................................................................TATCACACTGGCTGTTCTTTTT.....................	22	4	16.25	0.00	16.25	0.00
....................................................................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	4	16.00	0.00	15.25	0.75
....................................................................................................................TATCACAGTGGTTGTTCTTTT......................	21	4	15.75	0.00	15.75	0.00
....................................................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	4	15.75	0.00	15.25	0.50
....................................................................................................................TATCACAGTGGCTGCTCTTTT......................	21	4	14.50	0.00	14.50	0.00
....................................................................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	4	14.50	0.00	14.25	0.25
....................................................................................................................TATCACGGTGGCTGTTCTTTT......................	21	4	14.25	0.00	14.25	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	4	14.00	0.00	14.00	0.00
....................................................................................................................TATCTCAGTGGCTGTTCTTTTT.....................	22	4	13.50	0.00	13.50	0.00
....................................................................................................................TATCATAGTGGCTGTTCTTTT......................	21	4	12.75	0.00	12.75	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	4	12.75	0.00	12.75	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	4	12.25	0.00	12.00	0.25
......................................................................................................................TCACAGTGGCTGTTCTTTTT.....................	20	4	12.25	0.00	12.00	0.25
....................................................................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	4	11.75	0.00	11.75	0.00
....................................................................................................................TATCGCAGTGGCTGTTCTTTT......................	21	4	11.50	0.00	11.50	0.00
....................................................................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	4	11.50	0.00	11.25	0.25
....................................................................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	4	10.75	0.00	10.75	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	4	10.50	0.00	10.25	0.25
....................................................................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	4	9.50	0.00	9.50	0.00
....................................................................................................................TATCACAATGGCTGTTCTTTTT.....................	22	4	9.50	0.00	9.50	0.00
....................................................................................................................TATCACAGTGGCAGTTCTTTTT.....................	22	4	9.25	0.00	9.25	0.00
....................................................................................................................TTTCACAGTGGCTGTTCTTTTT.....................	22	4	8.50	0.00	8.50	0.00
....................................................................................................................TATCACAGTGGCTATTCTTTTT.....................	22	4	8.50	0.00	8.50	0.00
....................................................................................................................TATCACAGTGGCCGTTCTTTT......................	21	4	8.50	0.00	8.25	0.25
........................................................................................................................ACAGTGGCTGTTCTTTTTG....................	19	4	8.25	0.00	8.25	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	4	8.00	0.00	8.00	0.00
....................................................................................................................TATCACAGTGGCTGTCCTTTT......................	21	4	8.00	0.00	7.75	0.25
....................................................................................................................TATCACAGTGGCTGTTCTCTTTG....................	23	4	7.75	0.00	7.75	0.00
......................................................................................................................TATCAGTGGCTGTTCTTTTTG....................	21	3	10.33	0.00	10.33	0.00
....................................................................................................................TATCACAGTGGCTTTTCTTTT......................	21	4	7.75	0.00	7.75	0.00
........................................................................................................................ACAGTGGCTGGTCTTTTT.....................	18	4	7.50	0.00	7.50	0.00
....................................................................................................................TATCACAGCGGCTGTTCTTTT......................	21	4	7.50	0.00	7.50	0.00
....................................................................................................................TATCACAGTGGCTGTACTTTTT.....................	22	4	7.25	0.00	7.25	0.00
.....................................................................................................................ATCACAGTGGCTGTTCTTTTTG....................	22	4	7.25	0.00	7.25	0.00
....................................................................................................................TATCACATTGGCTGTTCTTTT......................	21	4	6.75	0.00	6.75	0.00
....................................................................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	4	6.75	0.00	6.50	0.25
....................................................................................................................TATCACAGTxGCTGTTCTTTT......................	20	4	6.50	0.00	6.50	0.00
....................................................................................................................CATCACAGTGGCTGTTCTTTT......................	21	4	6.50	0.00	6.50	0.00
.....................................................................................................................TTCACAGTGGCTGTTCTTTTT.....................	21	4	6.25	0.00	6.25	0.00
....................................................................................................................GATCACAGTGGCTGTTCTTTT......................	21	4	6.25	0.00	6.25	0.00
....................................................................................................................TATCACAGTGGCTGTTCTCTT......................	21	4	6.00	0.00	6.00	0.00
....................................................................................................................TACCACAGTGGCTGTTCTTTT......................	21	4	6.00	0.00	6.00	0.00
....................................................................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	4	6.00	0.00	6.00	0.00
....................................................................................................................TATCACAGTGCCTGTTCTTTT......................	21	4	5.75	0.00	5.75	0.00
...................................................................................................................CTATCACAGTGGCTGTTCTTTT......................	22	4	5.75	0.00	5.75	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTCT......................	21	4	5.75	0.00	5.75	0.00
....................................................................................................................TATCACAGTGGTTGTTCTTTTTG....................	23	4	5.75	0.00	5.50	0.25
....................................................................................................................TATCACAGTGGCxxTTCTTTT......................	19	4	5.75	0.00	5.75	0.00
....................................................................................................................TATCACACTGGCTGTTCTTTT......................	21	4	5.75	0.00	5.75	0.00
....................................................................................................................TGTCACAGTGGCTGTTCTTTT......................	21	4	5.50	0.00	5.50	0.00
....................................................................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	4	5.50	0.00	5.50	0.00
....................................................................................................................TATCACAGTGGCTCTTCTTTT......................	21	4	5.50	0.00	5.50	0.00

droYak2

T--AACCA---------------------TACCG--TTTTTAACCGCAGGGAACCTCTGCTGCTGATATATTATTG-------------------------AGA----AACTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................AGGGAACCTCTGCTGCTGATATA.........................................................................................	23	3	14.33	14.33	0.00	0.00	0.00	0.00
...............................................AGGGAACCTCTGCTGCTGATAT..........................................................................................	22	3	6.33	6.00	0.00	0.00	0.33	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	2.43	2.43	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	2.43	0.71	0.00	1.71	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	7	2.14	2.14	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	1.57	1.29	0.00	0.14	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	1.57	1.57	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	1.29	0.14	0.00	1.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	7	1.14	1.14	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	7	1.14	1.14	0.00	0.00	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	7	0.86	0.86	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	0.71	0.71	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	0.71	0.29	0.00	0.00	0.14	0.29
....................................................................................................................TATCACAGTGACTGTTCTTTT......................	21	7	0.71	0.71	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCCTTTT.....................	22	7	0.57	0.57	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTT......................	21	7	0.57	0.57	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTGTTTT......................	21	7	0.57	0.57	0.00	0.00	0.00	0.00
...............................................AGGGAACCTCTGCTGCTGATA...........................................................................................	21	3	1.33	1.33	0.00	0.00	0.00	0.00
....................................................................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	7	0.57	0.57	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	7	0.57	0.57	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTT........................	19	7	0.57	0.57	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTGTTT.......................	20	7	0.43	0.43	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	7	0.43	0.43	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	7	0.43	0.43	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGGTGTTCTTTTT.....................	22	7	0.43	0.43	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTTTT......................	21	7	0.43	0.29	0.00	0.00	0.00	0.14

droEre2

A--ACCCA---------------------TACCG--TTTTTAACCCCAGGGAACCTCTGCTGCTGATATATTATTG-------------------------A-A----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	4	5.25	1.25	0.00	0.00	4.00
...............................................AGGGAACCTCTGCTGCTGATATA.........................................................................................	23	2	6.50	6.50	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	4	3.00	3.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	4	2.50	2.50	0.00	0.00	0.00
...............................................AGGGAACCTCTGCTGCTGATAT..........................................................................................	22	2	4.50	4.50	0.00	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	4	2.00	2.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	4	1.75	1.75	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTT.......................	20	4	1.25	0.25	0.00	0.00	1.00
...............................................AGGGAACCTCTGCTGCTGATA...........................................................................................	21	2	2.50	2.50	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	4	1.25	1.25	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	5	0.80	0.80	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	4	0.75	0.75	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	4	0.75	0.75	0.00	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTT......................	21	4	0.75	0.75	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	4	0.75	0.75	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTTT.......................	20	4	0.75	0.75	0.00	0.00	0.00

droEug1

C--AACCA---------------------TGCCG--TTTTTAACCCCAGGGAACCTCTGCTGTTGATATATAATCA-------------------------GGA----AACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAT

Size

Hit Count

Total Norm

droBia1

T--ATCTA---------------------TTCCG--TTCTCAACCCCAGGGAACTTCTGCTGCTGATATATTAACT-------------------------A-A----A---GCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA

Size

Hit Count

Total Norm

droTak1

C--ACCCA---------------------TTCCG--TTTTTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG-------------------------A-A----AACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA

Size

Hit Count

Total Norm

droEle1

T--ACCCA---------------------TTCCG--TTTTTAACCACAGGGAACTTCTGCTGCTGATATATTATCA-------------------------A-A----AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAG

Size

Hit Count

Total Norm

droRho1

T--ACCAA---------------------GTCTG--TTTTTAACCACAGGGAACTTCTGCTGCTGATATATTATCG-------------------------A-A----AACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAG

Size

Hit Count

Total Norm

droFic1

C--ATCCA---------------------TTCCG--TTTTTAACCCTAGGGAACTTCTGCTGCTGATATATTATCG-------------------------A-A----AACTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAG

Size

Hit Count

Total Norm

droKik1

T--TCTTC---------------------TACCG--TGGTTAGCCCCAGGGAACTGCTGCTGCTGATATATTATCA-------------------------A-G----AATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAG

Size

Hit Count

Total Norm

droAna3

A--TATTA---------------------TTCCG--GTGTTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAA-A--------------AAA----ATCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	1.71	0.29	1.14	0.00	0.29
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	1.57	1.00	0.57	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTT.......................	20	7	1.43	1.14	0.29	0.00	0.00
...............................................AGGGAACTGTTGCTGCTGATATA.........................................................................................	23	3	3.00	0.00	0.33	0.00	2.67
....................................................................................................................TATCACAGTGGCTGTTCTT........................	19	7	0.71	0.29	0.43	0.00	0.00
...............................................AGGGAACTGTTGCTGCTGATAT..........................................................................................	22	3	1.00	0.00	0.00	0.33	0.67
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	0.43	0.14	0.14	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCTTT.......................	20	7	0.43	0.14	0.00	0.00	0.29
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	7	0.29	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	8	0.25	0.00	0.00	0.00	0.25
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	7	0.29	0.14	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGGCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACATTGTCTGTTCTTTT......................	21	7	0.14	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	8	0.13	0.00	0.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTGCTTTT......................	21	7	0.14	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTTTTGTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGATGTTCTTT.......................	20	7	0.14	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGTTCTTGTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	7	0.14	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTGT......................	21	7	0.14	0.00	0.00	0.14	0.00
....................................................................................................................TATCACAGTGGTTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	7	0.14	0.00	0.14	0.00	0.00
...............................................AGGGGACTGTTGCTGCTGATGTA.........................................................................................	23	3	0.33	0.00	0.00	0.00	0.33
...............................................ATGGAACTGTTGCTGCTGATATA.........................................................................................	23	3	0.33	0.00	0.00	0.00	0.33
....................................................................................................................TATCACAGTGGCTGGTTTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
...............................................AGGGAACGGTTGCTGCTGATGTA.........................................................................................	23	5	0.20	0.00	0.00	0.00	0.20
....................................................................................................................TATCACAGTGGCTGTTCTTTC......................	21	7	0.14	0.00	0.14	0.00	0.00
...............................................AGGGAACTGTTTCTGCTTATATA.........................................................................................	23	3	0.33	0.00	0.00	0.00	0.33
........................................................................ATTCTCGCAAAAA-A--------------AAA----AT.................................................	19	3	0.33	0.00	0.33	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTGTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................GATCACAGTGGCTGTGCT.........................	18	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTGTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCT.........................	18	7	0.14	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGCTCCTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATAACAGTGGCTGTTCTTTT......................	21	7	0.14	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTTTT....................	23	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGTCCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.14
...............................................GGGGAACTGTTGCTGCTGA.............................................................................................	19	4	0.25	0.25	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCTTCTT.....................	22	7	0.14	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	7	0.14	0.14	0.00	0.00	0.00

droBip1

T--TATTA---------------------TTCCG--GTGTTAACCCCAGGGAACTGTTGCTGCTGATATATTATACT------TT-CG-------------A-A--CTATCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAA

Size

Hit Count

Total Norm

dp4

T--CCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTT-T--------------G-A----CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................AGGGAACCGCTGCTGCTGATATA.........................................................................................	23	3	9.00	0.00	9.00	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	8	1.50	0.00	1.50	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	8	1.38	0.00	1.38	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	8	1.25	0.00	1.25	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	8	1.25	0.88	0.38	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	8	1.13	0.00	1.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	8	1.00	0.00	1.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	8	0.88	0.63	0.25	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	8	0.63	0.00	0.63	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTGTTTT......................	21	8	0.63	0.00	0.63	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	8	0.50	0.00	0.50	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	8	0.50	0.00	0.50	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTT.......................	20	8	0.38	0.00	0.38	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTT......................	21	8	0.38	0.00	0.38	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTGTT........................	19	8	0.38	0.00	0.38	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	8	0.38	0.00	0.38	0.00	0.00
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	8	0.38	0.00	0.38	0.00	0.00
......................................................................TTATCCACCCATCTT-T--------------G-A----CATTTCT............................................	25	3	1.00	0.00	1.00	0.00	0.00

droPer1

T--CCCCG---------------------TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTT-T--------------G-A----CATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	58.14	0.14	0.00	0.00	0.00	58.00
....................................................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	42.00	0.00	0.00	0.00	0.00	42.00
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	7	35.86	0.14	0.29	0.00	0.00	35.43
....................................................................................................................TATCACAGTGGCTGGTTTTTT......................	21	7	11.00	0.00	0.00	0.00	0.00	11.00
....................................................................................................................TATCACAGTGGCTGGTCTTT.......................	20	7	7.14	0.14	0.00	0.00	0.00	7.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	7	4.86	0.00	0.00	0.00	0.00	4.86
....................................................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	4.57	0.00	0.00	0.00	0.00	4.57
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	3.57	2.14	0.00	0.00	0.14	1.29
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	1.86	0.71	0.00	0.00	0.00	1.14
...............................................AGGGAACCGCTGCTGCTGATAT..........................................................................................	22	3	4.00	0.00	0.67	0.00	0.00	3.33
....................................................................................................................TATCACATTGGCTGGTCTTTTT.....................	22	7	1.57	0.00	0.00	0.00	0.00	1.57
...............................................AGGGAACCGCTGCTGCTGATATA.........................................................................................	23	3	2.67	0.00	1.33	0.00	0.00	1.33
....................................................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	1.14	0.00	0.00	0.00	0.00	1.14
....................................................................................................................TATCACAGTGGCTGGTTTTT.......................	20	7	1.14	0.00	0.00	0.00	0.00	1.14
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	7	1.14	0.00	0.71	0.00	0.14	0.29
....................................................................................................................TATCACAGTGGCTGTTCTTT.......................	20	7	1.00	0.14	0.00	0.00	0.00	0.86
...............................................AGGGAACTGTTGCTGCTGATATA.........................................................................................	23	5	1.40	0.00	0.00	0.00	0.00	1.40
....................................................................................................................TATCACAGTGGCTGGTGTTTT......................	21	7	0.86	0.00	0.14	0.00	0.14	0.57
....................................................................................................................TATCACAGTGGCTGGTCTT........................	19	7	0.71	0.00	0.14	0.00	0.00	0.57
....................................................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	8	0.63	0.25	0.00	0.00	0.00	0.38
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	0.57	0.00	0.57	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	7	0.57	0.00	0.00	0.00	0.00	0.57
....................................................................................................................TATCACAGTGGCTGGTCT.........................	18	7	0.43	0.00	0.00	0.00	0.00	0.43
....................................................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	7	0.43	0.43	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTT......................	21	7	0.29	0.00	0.14	0.00	0.14	0.00
....................................................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	7	0.29	0.00	0.00	0.00	0.00	0.29
...................................................................................................................CTATCACAGTGGCTGGTCTT........................	20	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
...................................................................................................................ATATCACAGTGGCTGGTCTTTT......................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	7	0.29	0.00	0.29	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	7	0.29	0.00	0.00	0.00	0.00	0.29
....................................................................................................................TATCACAGTGGCTAATCTTTTT.....................	22	7	0.29	0.00	0.29	0.00	0.00	0.00
................................................GGAAACCGCTGCCGCTGA.............................................................................................	18	3	0.33	0.00	0.00	0.00	0.00	0.33
....................................................................................................................TATCACAGCGGCTGGTCTTT.......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	8	0.13	0.00	0.13	0.00	0.00	0.00
.....................................................................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTGTT........................	19	7	0.14	0.00	0.14	0.00	0.00	0.00
...................................................................................................................ATATCACAGTGGCTGGTTTTTTT.....................	23	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGCGGCTGGTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
.....................................................................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTxTTCTTTT......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACxxTGGCTGTTCTTTTT.....................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCGTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGCCTGGTCTTT.......................	20	7	0.14	0.00	0.00	0.00	0.14	0.00
...............................................AGGGAACCGCTGCTGCTGATATAA........................................................................................	24	3	0.33	0.00	0.00	0.00	0.00	0.33
....................................................................................................................TATCACAGTGGCTTTTCTT........................	19	7	0.14	0.00	0.00	0.00	0.00	0.14
.........................................AACCGCAGGGTACCGTTGCT..................................................................................................	20	2	0.50	0.00	0.50	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGAGCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.14	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTT.......................	20	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTTTTCT.........................	18	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCCGTTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCCT........................	19	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTT......................	21	7	0.14	0.00	0.14	0.00	0.00	0.00
...............................................AGGGAACCGCTGCTGCTGATA...........................................................................................	21	3	0.33	0.00	0.33	0.00	0.00	0.00
....................................................................................................................TATCACxxTGGCTGTTCTTTT......................	19	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGGGGCTGTTCTTTTTT....................	23	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTATTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGGCTTT.......................	20	7	0.14	0.00	0.14	0.00	0.00	0.00
.....................................................................................................................ATCACAGTGGCTGGTCTTTTTG....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGTTCTTC.......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14
...................................................................................................................ATATCACAGTGGCTGGTTTTTT......................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACATTGACTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACATTGGCTGTTCTTTT......................	21	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACATTGGCTGTTTTTTTT.....................	22	7	0.14	0.00	0.00	0.00	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTGTTT.......................	20	7	0.14	0.00	0.00	0.00	0.00	0.14

droWil1

T--TTTTA------A--A-----------GTTTT--TGTTTAACCGCAGGGAACTGTCGCTGCTGATATATA-----TATATTAT-TGTTATATATAATTTAAAAATGATTTTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	8	12957.50	0.00	12956.88	0.63	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	8	3038.38	0.13	3038.00	0.25	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTT.......................	20	8	430.88	0.63	430.13	0.13	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	8	411.00	0.00	411.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	8	215.75	0.00	214.00	1.50	0.25
....................................................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	8	193.25	0.00	193.13	0.13	0.00
....................................................................................................................TATCACAGTGGCTGTTCTT........................	19	8	119.25	0.00	118.75	0.50	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	8	80.75	0.00	80.75	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	8	70.63	0.00	70.63	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCT.........................	18	8	47.75	0.00	47.75	0.00	0.00
...............................................AGGGAACTGTCGCTGCTGATATA.........................................................................................	23	3	110.33	0.33	110.00	0.00	0.00
....................................................................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	8	34.25	0.00	34.25	0.00	0.00
....................................................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	8	33.38	0.00	33.25	0.13	0.00
....................................................................................................................TATCACAGTGGATGTTCTTTTT.....................	22	8	30.00	0.00	30.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	8	28.38	0.00	27.38	0.50	0.50
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	8	27.00	0.00	27.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	10	21.50	0.00	21.40	0.10	0.00
....................................................................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	10	21.30	0.00	21.30	0.00	0.00
....................................................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	10	19.40	0.00	19.40	0.00	0.00
....................................................................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	8	24.00	0.00	24.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	8	21.88	0.00	21.88	0.00	0.00
....................................................................................................................TATAACAGTGGCTGTTCTTTTT.....................	22	8	21.25	0.00	21.25	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	8	20.13	0.00	20.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTATTTTT.....................	22	8	18.88	0.00	18.88	0.00	0.00
...............................................AGGGAACTGTCGCTGCTGATAT..........................................................................................	22	3	45.00	0.00	45.00	0.00	0.00
........................................................................................................................ACAGTGGCTGTTCTTTTT.....................	18	8	16.75	0.00	16.75	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	8	16.00	0.00	16.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTAA....................	23	8	15.63	0.00	15.63	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	8	15.00	0.00	15.00	0.00	0.00
....................................................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	8	14.75	0.00	14.63	0.13	0.00
....................................................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	8	14.13	0.00	14.13	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	8	13.25	0.00	13.25	0.00	0.00
...................................................................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	8	12.38	0.00	12.38	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	8	12.25	0.00	12.25	0.00	0.00
....................................................................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	8	12.25	0.00	12.25	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	8	12.13	0.00	12.13	0.00	0.00
....................................................................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	8	11.38	0.00	11.25	0.13	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	8	11.25	0.00	11.25	0.00	0.00
....................................................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	8	11.00	0.00	11.00	0.00	0.00
....................................................................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	8	10.88	0.00	10.88	0.00	0.00
....................................................................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	8	10.38	0.00	10.38	0.00	0.00
....................................................................................................................TATCACACTGGCTGTTCTTTTT.....................	22	8	9.00	0.00	9.00	0.00	0.00
....................................................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	8	8.75	0.00	8.75	0.00	0.00
....................................................................................................................TATCACAGTGGCTxTTCTTTT......................	20	8	8.63	0.00	8.50	0.13	0.00
.....................................................................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	8	8.50	0.00	8.50	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	8	8.13	0.00	8.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCCTTT......................	21	10	6.50	0.00	6.40	0.10	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	8	7.75	0.00	7.75	0.00	0.00
...............................................AGGGAACTGTCGCTGCTGATA...........................................................................................	21	3	20.33	0.00	20.33	0.00	0.00
....................................................................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	8	7.63	0.00	7.63	0.00	0.00
....................................................................................................................TATCACAGTGGATGTTCTTTT......................	21	8	7.13	0.00	7.13	0.00	0.00
....................................................................................................................TATCACAGCGGCTGTTCTTTT......................	21	8	7.13	0.00	7.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTG.....................	22	8	7.00	0.00	7.00	0.00	0.00
....................................................................................................................TATCACAGTTGCTGTTCTTTT......................	21	10	5.40	0.00	5.40	0.00	0.00
....................................................................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	8	6.63	0.00	6.63	0.00	0.00
....................................................................................................................TATCACAGTGTCTGTTCTTTT......................	21	8	6.13	0.00	6.13	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	8	6.13	0.00	6.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTATTCTTTTT.....................	22	8	6.00	0.00	6.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGATCTTTTT.....................	22	8	6.00	0.00	6.00	0.00	0.00
....................................................................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	8	5.88	0.00	5.88	0.00	0.00
....................................................................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	8	5.88	0.00	5.88	0.00	0.00
....................................................................................................................TATCACAGTGGCTGCTCTTTT......................	21	8	5.63	0.00	5.63	0.00	0.00
....................................................................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	8	5.25	0.00	5.13	0.13	0.00
....................................................................................................................TATCACATTGGCTGTTCTTTT......................	21	8	5.25	0.00	5.25	0.00	0.00
......................................................................................................................TATCAGTGGCTGTTCTTTTT.....................	20	8	5.13	0.00	5.13	0.00	0.00
....................................................................................................................TATCCCAGTGGCTGTTCTTTTT.....................	22	8	5.00	0.00	5.00	0.00	0.00
....................................................................................................................TATCACAATGGCTGTTCTTTTT.....................	22	8	5.00	0.00	5.00	0.00	0.00
....................................................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	8	4.88	0.00	4.88	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTATTTT......................	21	8	4.75	0.00	4.75	0.00	0.00
....................................................................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	8	4.50	0.00	4.50	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	8	4.00	0.00	4.00	0.00	0.00
....................................................................................................................TATAACAGTGGCTGTTCTTTT......................	21	8	4.00	0.00	4.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTTTTCTTTT......................	21	8	3.88	0.00	3.88	0.00	0.00
...................................................................................................................CTATCACAGTGGCTGTTCTTTT......................	22	8	3.88	0.00	3.88	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTT.......................	20	8	3.88	0.00	3.63	0.00	0.25
....................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...................	24	8	3.75	0.00	3.75	0.00	0.00
....................................................................................................................TATCGCAGTGGCTGTTCTTTT......................	21	8	3.75	0.00	3.75	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	8	3.63	0.00	3.38	0.13	0.13
....................................................................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	8	3.38	0.00	3.38	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTA......................	21	8	3.38	0.00	3.38	0.00	0.00
....................................................................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	8	3.25	0.00	3.25	0.00	0.00
...................................................................................................................ATATCACAGTGGCTGTTCTTTT......................	22	8	3.25	0.00	3.25	0.00	0.00
....................................................................................................................TATCACAGTGGCCGTTCTTTT......................	21	8	3.13	0.00	3.13	0.00	0.00
....................................................................................................................TATCACAGTxGCTGTTCTTTT......................	20	8	3.13	0.00	3.13	0.00	0.00
....................................................................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	8	3.00	0.00	3.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTTT......................	21	10	2.40	0.00	2.40	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTT......................	21	8	2.88	0.00	2.88	0.00	0.00
....................................................................................................................CATCACAGTGGCTGTTCTTTT......................	21	8	2.88	0.00	2.88	0.00	0.00
....................................................................................................................TACCACAGTGGCTGTTCTTTT......................	21	8	2.88	0.00	2.88	0.00	0.00
....................................................................................................................TAACACAGTGGCTGTTCTTTTT.....................	22	8	2.75	0.00	2.75	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	8	2.75	0.00	2.75	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	8	2.75	0.00	1.75	0.50	0.50
....................................................................................................................TATCAAAGTGGCTGTTCTTTTT.....................	22	8	2.63	0.00	2.63	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTCTT......................	21	8	2.50	0.00	2.50	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	8	2.50	0.00	2.50	0.00	0.00
...............................................AGGGAACTGTCGCTGCTGAT............................................................................................	20	3	6.33	0.00	6.33	0.00	0.00
....................................................................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	8	2.38	0.00	2.38	0.00	0.00
......................................................................................................................TCACAGTGGCTGTTCTTTTT.....................	20	8	2.38	0.00	2.38	0.00	0.00
....................................................................................................................TATTACAGTGGCTGTTCTTTT......................	21	8	2.25	0.00	2.25	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTCT......................	21	8	2.25	0.00	2.25	0.00	0.00
....................................................................................................................TATCACAGTGCCTGTTCTTTT......................	21	8	2.25	0.00	2.13	0.13	0.00

droVir3

T--AAATATTTGCTGACAAATTTCTTATGTGCTA--TGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAGA----TTATAT-------------------CGATTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................AGGGAACTGCTGCTGCTGATATA.........................................................................................	23	3	10.00	0.00	0.00	10.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	7	1.29	0.00	0.00	0.86	0.29	0.14
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	7	1.14	0.86	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	7	1.14	0.00	0.00	1.14	0.00	0.00
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	7	0.86	0.14	0.00	0.71	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	7	0.71	0.57	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	7	0.57	0.00	0.00	0.14	0.43	0.00
....................................................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	7	0.57	0.00	0.00	0.57	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	7	0.57	0.00	0.00	0.57	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	7	0.57	0.00	0.00	0.29	0.00	0.29
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	7	0.43	0.00	0.00	0.43	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	7	0.43	0.00	0.00	0.43	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	7	0.43	0.00	0.00	0.29	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTTTT........................	19	7	0.29	0.00	0.14	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	7	0.29	0.00	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	7	0.29	0.00	0.00	0.14	0.00	0.14
....................................................................................................................TATCACAGTGGCTGGTCCTTTT.....................	22	7	0.29	0.00	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTGGCTGATCTTTTT.....................	22	7	0.29	0.00	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	7	0.29	0.29	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTCTCTGTTCTTTT......................	21	7	0.29	0.00	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTT.......................	20	7	0.29	0.00	0.00	0.29	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTGTTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................CATCACAGTGGGTGTTCTT........................	19	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTGCTTT.......................	20	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCGTT.......................	20	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................TGTGTAACCGCAGGGACCTG.......................................................................................................	20	2	0.50	0.00	0.00	0.00	0.00	0.50
....................................................................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
...............................................AGGGCACTGCTGCTGCTGATCTA.........................................................................................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTTGTT.....................	22	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	8	0.13	0.00	0.00	0.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTGTT........................	19	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTAGCTGTTCTTTTTG....................	23	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTGTTTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	7	0.14	0.14	0.00	0.00	0.00	0.00
....................................................................................................................TAACACAGTGGCTGTTGTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTGTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
...............................................AGGGAACTGCTGCTGCTCATCTA.........................................................................................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
....................................................................................................................TATCACAGTGGTTGTTCTTTTTT....................	23	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTATTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACGGTGGCTGGTCTTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTTTC......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
...............................................AGGGAACTGCTGCTGCTGATCTA.........................................................................................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
....................................................................................................................TATCACAGTGCCTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGCCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGACTGTTCTTT.......................	20	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGTTGTTCTTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTGCCTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTGCTTGTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTCTT........................	19	7	0.14	0.14	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTGTTT.......................	20	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTCTGTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
......................................................................................................................TATCAGTGGCTGTTCTTTTT.....................	20	7	0.14	0.14	0.00	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGTTTTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGTTGTTCTTTC......................	21	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAATGGCTGTGCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCAGAGTGGGTGTTCTT........................	19	7	0.14	0.00	0.14	0.00	0.00	0.00
....................................................................................................................TATCACAGTGGCTGGGCTTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGCTCTTTTTT....................	23	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTGTTTTG.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCGCAGTGGCTGTTCTTTTTT....................	23	7	0.14	0.00	0.00	0.14	0.00	0.00
........................................................................................................................ACAGTGGCTGTTCTTTTT.....................	18	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGACTGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	8	0.13	0.00	0.00	0.13	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTGTTTTTT.....................	22	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTTGCTGTTCTTTTTT....................	23	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTATTCTTTTTT....................	23	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTGTT........................	19	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGTTTTTTTTT....................	23	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGAGGCTGGTCTTTT......................	21	7	0.14	0.00	0.00	0.14	0.00	0.00
....................................................................................................................TATCACAGTGGCTGCTCTTT.......................	20	7	0.14	0.00	0.00	0.14	0.00	0.00

droMoj3

T--ATCCA------GAGA-----------GATTG--CGTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATATG----TATT-TGTC-----------A-G----TAC-TCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
....................................................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	7.33	0.00	0.00	0.00	7.33
....................................................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	5.67	0.00	0.00	0.00	5.67
...............................................AGGGAACTGCTGCTGCTGATATA.........................................................................................	23	1	17.00	0.00	0.00	0.00	17.00
....................................................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	4.00	0.33	0.00	0.00	3.67
....................................................................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	4.00	0.00	0.00	0.00	4.00
....................................................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	3.67	0.00	0.00	0.00	3.67
....................................................................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	3.00	0.00	0.00	0.00	3.00
....................................................................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
....................................................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.67	0.00	0.00	0.00	2.67
....................................................................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
....................................................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
....................................................................................................................TATCACAGTGGCTGGTGTT........................	19	3	2.00	0.00	0.00	0.00	2.00
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
....................................................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
...............................................AGGGAACTGCTGCTGCTGATAT..........................................................................................	22	1	5.00	0.00	1.00	0.00	4.00
....................................................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACAGTGGCTGGTCTT........................	19	3	1.33	0.00	0.33	0.00	1.00
....................................................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACAGTGGCCGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
....................................................................................................................TATCACAGTGGCTGGTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.00	0.00	0.33	0.00	0.67
....................................................................................................................TATAACAGTGGCTGTTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	1.00	0.67	0.00	0.00	0.33
....................................................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	1.00	0.00	0.00	0.00	1.00
....................................................................................................................TATCACAGTGACTGTTCTTTTTC....................	23	3	1.00	0.00	0.00	0.00	1.00

droGri2

TTCACCAA---------------------TGCTA--TGTTTAACCACAGGGAACTGCTGCTGCTGATATACAACCA-----TATT-T--------------ATA----CACGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA	Size	Hit Count	Total Norm	V109 Male body
....................................................................................................................TATCACAGTGGCTGTTCTTTT......................	21	8	1.13	1.13
....................................................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	8	0.63	0.63
....................................................................................................................TATCACAGTGGCTGTTCTTT.......................	20	8	0.25	0.25
....................................................................................................................TATCACAGTGGCTGGTCTTTT......................	21	8	0.13	0.13
....................................................................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	8	0.13	0.13

Generated: 04/20/2012 at 05:19:05 EDT

dme-mir-6-2

chr2R:15548374-15548447 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup