dme-mir-6-2- 12- and 20-way alignments

dme-mir-6-2	chr2R:15548374-15548447 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 15548379-15548400
   star strand at position 15548418-15548440
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:15548359-15548462 -	TAACCATGCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATT--------------------------GAAAAAC--TACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSim1	chr2R:14253794-14253897 -	TAACCATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT--------------------------GAAAAAC--TCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSec1	super_1:13063092-13063195 -	TAACCATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT--------------------------GAAAAAC--TCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droYak2	chr2R:13624327-13624430 +	TAACCATACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATT--------------------------GAGAAAC--TTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEre2	scaffold_4845:9748613-9748715 -	AACCCATACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATT--------------------------GA-AAAC--TCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG
droAna3	scaffold_13266:9731949-9732061 +	TAT-TATTCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTC---------------TCCCAAAAA-AAAAATC--ACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC
dp4	chr3:12676931-12677045 -	TCCCCGTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCC---------------ACCCATCTTTG--ACAT--TTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droPer1	super_2:8906627-8906741 +	TCCCCGTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCC---------------ACCCATCTTTG--ACAT--TTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droWil1	scaffold_180701:1651131-1651244 -	TT---------------TAACCGCAGGGAACTGTCGCTGCTGtTtTtTtTtTtTTtTTGTTtTtTtTttTTTttt---ttTGATT--TTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAA
droVir3	Unknown	TTTCTTATGTGCTT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTAT---------------AGATTAT---A--TCGA--TTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAA
droMoj3	Unknown	TATCCAGAGAGA-TTTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATAT-------------------GTATTTG--TCAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA
droGri2	Unknown	ATTCACCAATGCTT--TTAACCACAGGGAACTGCTGCTGCTGATATACAA--------------------CCATATT-TATACAC--GACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:15548359-15548462 -	NA	T--AACCAT------GCCGTTTTT--AACCCAAGGGAACTTCTGCTGCTGATATATTATTG----------AA--AA---ACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSim1	chr2R:14253794-14253897 -	1	T--AACCAT------GCCGTTTTT--AACCCCAGGGAACTTCTGCTGCTGATATATTATTG----------AA--AA---ACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droSec1	super_1:13063092-13063195 -	1	T--AACCAT------GCCGTTTTT--AACCCCAGGGAACTTCTGCTGCTGATATATTATTG----------AA--AA---ACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droYak2	chr2R:13624327-13624430 +	1	T--AACCAT------ACCGTTTTT--AACCGCAGGGAACCTCTGCTGCTGATATATTATTG----------AG--AA---ACTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEre2	scaffold_4845:9748613-9748715 -	1	A--ACCCAT------ACCGTTTTT--AACCCCAGGGAACCTCTGCTGCTGATATATTATTG-----------A--AA---ACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG
droEug1	scf7180000409474:2397387-2397490 +	1	C--AACCAT------GCCGTTTTT--AACCCCAGGGAACCTCTGCTGTTGATATATAATCA----------GG--AA---ACTACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAT
droBia1	scf7180000302143:3059278-3059377 -	1	T--ATCTAT------TCCGTTCTC--AACCCCAGGGAACTTCTGCTGCTGATATATTAACT-----------A--AA------GCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droTak1	scf7180000415384:84590-84692 +	1	C--ACCCAT------TCCGTTTTT--AACCCCAGGGAACTTCTGCTGCTGATATATTATTG-----------A--AA---ACTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA
droEle1	scf7180000491201:2013437-2013539 -	1	T--ACCCAT------TCCGTTTTT--AACCACAGGGAACTTCTGCTGCTGATATATTATCA-----------A--AA---ACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAG
droRho1	scf7180000780066:74210-74312 +	1	T--ACCAAG------TCTGTTTTT--AACCACAGGGAACTTCTGCTGCTGATATATTATCG-----------A--AA---ACTTTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAG
droFic1	scf7180000454039:847499-847601 -	1	C--ATCCAT------TCCGTTTTT--AACCCTAGGGAACTTCTGCTGCTGATATATTATCG-----------A--AA---ACTCGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAG
droKik1	scf7180000302679:88805-88907 -	1	T--TCTTCT------ACCGTGGTT--AGCCCCAGGGAACTGCTGCTGCTGATATATTATCA-----------A--GA---ATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAG
droAna3	scaffold_13266:9731948-9732061 +	1	A--TATTAT------TCCGGTGTT--AGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTCCCAAAAAAAA--AA---TCACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC
droBip1	scf7180000396427:874897-875006 +	1	T--TATTAT------TCCGGTGTT--AACCCCAGGGAACTGTTGCTGCTGATATATTATACTTT------CGAACTA---TCTCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAA
dp4	chr3:12676931-12677045 -	2	T--CCCCGT------GCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTT-G--AC---ATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droPer1	super_2:8906627-8906741 +	1	T--CCCCGT------GCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCACCCATCTTT-G--AC---ATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA
droWil1	scaffold_180701:1650986-1651094 -	2	T--TTCATT------TTTTGTTTA--AAAAGAAGGGAACGGTTGCTGTTGATGTAGTATACCAT------TTTGTTT---AACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAAT---CAA
droVir3	scaffold_12875:4112939-4113033 +	3	T--GACGCTCGT---CAATTGTTTA-AAAGGAAGAGAACGTTCGCTGTTGATGTAGTCGAC------CTTT-G--TA---CTCTTTATATCACAGTGGCTGTTCTTTTTTGTT-----------------
droMoj3	scaffold_6496:20936121-20936236 -	1	T--ATCCAGAGAGATT--GCGTTT--AACCGCAGGGAACTGCTGCTGCTGATATACTATATG----TATTT-G--TCAGTAC-TCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA
droGri2	scaffold_15112:2108071-2108181 -	3	TTCACCAAT------GCTATGTTT--AACCACAGGGAACTGCTGCTGCTGATATACAACCA-----TATTTAT--AC---ACGACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TAACCATGCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATT--------------------------GAAAAAC--TACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA

Size

Hit Count

Total Norm

droSim1

TAACCATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT--------------------------GAAAAAC--TCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	2237.00	2.33	3.67	2.33	2228.67
............................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1354.33	1.00	3.67	3.00	1346.67
............................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	959.00	1.00	1.00	0.67	956.33
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	890.33	1.67	1.67	3.67	883.33
............................................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	329.67	0.00	0.00	1.33	328.33
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	131.33	3.00	0.00	0.33	128.00
............................................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	114.33	0.33	2.00	0.67	111.33
............................................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	44.00	0.00	0.00	0.00	44.00
............................................................................................TATCACAGTGGCTGGTTTTTTTG....................	23	2	52.00	0.00	0.00	0.00	52.00
............................................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	31.00	1.00	0.33	0.00	29.67
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	27.67	0.33	0.33	0.00	27.00
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	27.33	1.00	0.00	0.00	26.33
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	26.67	1.00	0.33	0.00	25.33
............................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	25.33	0.00	0.00	0.00	25.33
........................AGGGAACTTCTGCTGCTGATATA........................................................................................	23	1	70.00	37.00	0.00	0.00	33.00
............................................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	3	18.00	0.00	0.00	0.00	18.00
........................AGGGAACTTCTGCTGCTGATAT.........................................................................................	22	1	53.00	21.00	0.00	0.00	32.00
............................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	16.33	1.00	0.00	0.00	15.33
............................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	13.00	3.00	0.00	0.00	10.00
............................................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	12.33	0.00	0.00	0.00	12.33
............................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	11.00	0.00	0.00	0.00	11.00
............................................................................................TATCACATTGGCTGGTCTTTTT.....................	22	3	10.67	0.00	0.00	0.00	10.67
........................AGGGAACTTCTGCTGCTGATA..........................................................................................	21	1	21.00	6.00	0.00	0.00	15.00
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	6.67	4.33	0.00	0.00	2.33
............................................................................................TATCACAGTGGCTGGTCTTTTTTG...................	24	2	10.00	0.00	0.00	0.00	10.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	6.33	4.00	0.00	0.00	2.33
............................................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	4.75	0.00	0.00	0.00	4.75
............................................................................................TATCACAGTGGCTGGTCTT........................	19	3	5.67	0.67	0.00	0.00	5.00
............................................................................................TATCACAGTGGCTGTTTTTTTTT....................	23	3	5.33	0.00	0.00	0.00	5.33
.............................................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	3	5.33	0.00	0.00	0.00	5.33
............................................................................................TATCACAGTGGCTGGTCTTTTTGT...................	24	2	7.00	0.00	0.00	0.00	7.00
............................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	4.33	0.00	0.00	0.00	4.33
............................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	3.25	0.00	0.00	0.00	3.25
............................................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	3	4.00	0.00	0.00	0.00	4.00
............................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	3.67	0.00	0.00	0.00	3.67
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	3.67	2.00	0.00	0.00	1.67
............................................................................................TATCACAGTGGCCGTTCTTTTTG....................	23	3	3.33	0.00	0.00	0.00	3.33
............................................................................................TATCACAGTGACTGTTCTTTTTG....................	23	3	3.00	0.00	0.00	0.00	3.00
............................................................................................TATCACAGTGGCTGTTTTTT.......................	20	4	2.00	0.00	0.00	0.00	2.00
............................................................................................TATCACAGTGGCTGGTCT.........................	18	3	2.67	0.00	0.00	0.00	2.67
............................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	2.67	2.00	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	2.67	0.67	0.00	0.00	2.00
............................................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	2.67	0.00	0.33	0.00	2.33
............................................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	3	2.67	0.00	0.33	0.00	2.33
............................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	2.67	0.00	0.00	0.00	2.67
............................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	2.33	0.00	0.00	0.00	2.33
............................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	2.33	1.33	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	2.33	0.00	0.00	0.00	2.33
............................................................................................TATCACATTGGCTGTTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
............................................................................................TATCACAGTGGCTGGGCTTTT......................	21	3	2.33	0.33	0.00	0.00	2.00
.............................................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	3	2.00	0.00	0.00	0.00	2.00
............................................................................................TATCACAGTGGCTGGTATTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
............................................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	2.00	0.33	0.00	0.00	1.67
............................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
............................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
.............................................................................................ATCACAGTGGCTGGTCTTTT......................	20	3	2.00	0.00	0.00	0.00	2.00
............................................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.00	0.67	0.00	0.00	1.33
............................................................................................TATCACAGTGGCTCTTCTTTTTG....................	23	3	2.00	0.00	0.00	0.00	2.00
............................................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
............................................................................................TATCACACTGGCTGGTCTTTTT.....................	22	3	1.67	0.00	0.00	0.00	1.67
............................................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	3	1.67	0.00	0.00	0.00	1.67
..............................................................................................TCACAGTGGCTGGTCTTTTT.....................	20	3	1.67	0.00	0.00	0.00	1.67
............................................................................................TATCACATTGGCTGTTCTTTTTT....................	23	3	1.67	0.00	0.00	0.00	1.67
............................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	1.25	0.25	0.00	0.00	1.00
............................................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	1.67	0.00	0.00	0.00	1.67
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.67	1.33	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTGTT........................	19	3	1.33	1.00	0.00	0.00	0.33
............................................................................................TATCACGGTGGCTGTTCTTTTTG....................	23	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	3	1.33	1.00	0.00	0.00	0.33
.............................................................................................ATCACAGTGGCTGGTTTTTTT.....................	21	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCGCAGTGGCTGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACACTGGCTGTTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTxTTCTTTTTGT...................	23	2	1.50	0.00	0.00	0.00	1.50
............................................................................................TATCACGGTGGCTGTTCTTT.......................	20	3	1.00	1.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTCT.....................	22	3	1.00	0.67	0.00	0.00	0.33
............................................................................................TACCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGTCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
............................................................................................TATCACATTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTGGCCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGTTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.00	0.67
............................................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	1.00	1.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTGT......................	21	3	1.00	1.00	0.00	0.00	0.00
............................................................................................TATCACAxTGGCTGTTCTTTTTG....................	22	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	1.00	0.00	0.00	0.00	1.00
...........................................................................................CTATCACAGTGGCTGGTCTTTTT.....................	23	3	1.00	0.00	0.00	0.00	1.00
................................................................................................ACAGTGGCTGGTCTTTTT.....................	18	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTGGTATTTTTG....................	23	2	1.50	0.00	0.00	0.00	1.50
........................AGGGAACTTCTGCTGCTGAT...........................................................................................	20	1	3.00	2.00	0.00	0.00	1.00
............................................................................................TATCACAGTTGCTGTTCTTTT......................	21	4	0.75	0.25	0.00	0.00	0.50
............................................................................................TATCACAGTGGCTGGTTTT........................	19	3	1.00	0.33	0.00	0.00	0.67

droSec1

TAACCATGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATT--------------------------GAAAAAC--TCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	26569.33	4.67	26307.33	257.33
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	7989.67	3.33	7940.33	46.00
............................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	2352.67	0.33	2326.33	26.00
............................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	1409.33	1.00	1396.67	11.67
............................................................................................TATCACAGTGGCTGTTCTTTTTGT...................	24	2	649.50	0.00	635.00	14.50
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	374.33	0.00	373.33	1.00
............................................................................................TATCACAGTGGCTGTTCTT........................	19	3	258.67	0.00	252.33	6.33
............................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	165.33	0.33	164.67	0.33
............................................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	3	125.67	0.00	122.67	3.00
................................................................................................ACAGTGGCTGTTCTTTTT.....................	18	3	112.00	0.00	111.33	0.67
............................................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	4	77.75	0.00	76.75	1.00
..............................................................................................TATCAGTGGCTGTTCTTTTT.....................	20	3	101.00	0.00	100.67	0.33
............................................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	3	80.00	0.33	78.67	1.00
............................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	57.00	0.00	55.50	1.50
............................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	71.67	0.00	71.00	0.67
............................................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	3	69.33	0.00	69.33	0.00
............................................................................................TATCACAGTGGCTGTTCT.........................	18	3	67.00	0.00	65.33	1.67
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	67.00	0.00	66.00	1.00
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	59.00	0.00	58.00	1.00
............................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	49.67	0.00	49.67	0.00
............................................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	3	48.33	0.00	47.67	0.67
.............................................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	3	43.00	0.00	42.67	0.33
............................................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	42.00	0.00	41.67	0.33
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	41.00	0.00	40.00	1.00
............................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	40.67	0.00	40.00	0.67
............................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	36.67	0.00	36.67	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTGA...................	24	3	36.00	0.00	36.00	0.00
............................................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	35.00	0.00	35.00	0.00
............................................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	33.33	0.00	32.67	0.67
............................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	32.33	0.00	31.67	0.67
............................................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	3	31.67	0.00	31.33	0.33
............................................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	3	31.33	0.00	31.33	0.00
............................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	23.00	0.00	22.75	0.25
............................................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	3	29.33	0.00	28.67	0.67
..............................................................................................TATCAGTGGCTGTTCTTTT......................	19	3	29.00	0.00	28.33	0.67
............................................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	3	28.67	0.00	28.33	0.33
............................................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	3	28.33	0.00	28.33	0.00
............................................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	3	28.33	0.00	28.33	0.00
...........................................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	3	28.00	0.00	28.00	0.00
............................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	26.33	0.00	26.33	0.00
............................................................................................TATCACAGTGGCTGATCTTTTT.....................	22	3	24.67	0.00	24.67	0.00
............................................................................................TATTACAGTGGCTGTTCTTTT......................	21	3	24.33	0.00	24.33	0.00
............................................................................................TATCACAGTGGCTGTTCCTTT......................	21	4	17.75	0.00	17.75	0.00
........................AGGGAACTTCTGCTGCTGATATA........................................................................................	23	1	70.00	0.00	70.00	0.00
............................................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	3	23.33	0.00	23.33	0.00
............................................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	3	23.00	0.00	23.00	0.00
........................AGGGAACTTCTGCTGCTGATAT.........................................................................................	22	1	69.00	0.00	68.00	1.00
............................................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	22.00	0.00	22.00	0.00
............................................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	16.25	0.00	16.00	0.25
............................................................................................TATCACACTGGCTGTTCTTTTT.....................	22	3	21.67	0.00	21.67	0.00
............................................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	3	21.33	0.00	20.33	1.00
............................................................................................TATCACAGTGGTTGTTCTTTT......................	21	3	21.00	0.00	21.00	0.00
............................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	21.00	0.00	20.33	0.67
............................................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	19.33	0.00	19.33	0.00
............................................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	3	19.33	0.00	19.00	0.33
............................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	19.00	0.00	19.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	3	18.67	0.00	18.67	0.00
............................................................................................TATCTCAGTGGCTGTTCTTTTT.....................	22	3	18.00	0.00	18.00	0.00
............................................................................................TATCATAGTGGCTGTTCTTTT......................	21	3	17.00	0.00	17.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	17.00	0.00	17.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	16.33	0.00	16.00	0.33
..............................................................................................TCACAGTGGCTGTTCTTTTT.....................	20	3	16.33	0.00	16.00	0.33
............................................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	3	15.67	0.00	15.67	0.00
............................................................................................TATCGCAGTGGCTGTTCTTTT......................	21	3	15.33	0.00	15.33	0.00
............................................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	3	15.33	0.00	15.00	0.33
............................................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	3	14.33	0.00	14.33	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	3	14.00	0.00	13.67	0.33
............................................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	12.67	0.00	12.67	0.00
............................................................................................TATCACAATGGCTGTTCTTTTT.....................	22	3	12.67	0.00	12.67	0.00
............................................................................................TATCACAGTGGCAGTTCTTTTT.....................	22	3	12.33	0.00	12.33	0.00
............................................................................................TTTCACAGTGGCTGTTCTTTTT.....................	22	3	11.33	0.00	11.33	0.00
............................................................................................TATCACAGTGGCTATTCTTTTT.....................	22	3	11.33	0.00	11.33	0.00
............................................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	11.33	0.00	11.00	0.33
................................................................................................ACAGTGGCTGTTCTTTTTG....................	19	3	11.00	0.00	11.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	3	10.67	0.00	10.67	0.00
............................................................................................TATCACAGTGGCTGTCCTTTT......................	21	3	10.67	0.00	10.33	0.33
............................................................................................TATCACAGTGGCTGTTCTCTTTG....................	23	3	10.33	0.00	10.33	0.00
..............................................................................................TATCAGTGGCTGTTCTTTTTG....................	21	2	15.50	0.00	15.50	0.00
............................................................................................TATCACAGTGGCTTTTCTTTT......................	21	3	10.33	0.00	10.33	0.00
................................................................................................ACAGTGGCTGGTCTTTTT.....................	18	3	10.00	0.00	10.00	0.00
............................................................................................TATCACAGCGGCTGTTCTTTT......................	21	3	10.00	0.00	10.00	0.00
............................................................................................TATCACAGTGGCTGTACTTTTT.....................	22	3	9.67	0.00	9.67	0.00
.............................................................................................ATCACAGTGGCTGTTCTTTTTG....................	22	3	9.67	0.00	9.67	0.00
............................................................................................TATCACATTGGCTGTTCTTTT......................	21	3	9.00	0.00	9.00	0.00
............................................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	3	9.00	0.00	8.67	0.33
............................................................................................TATCACAGTxGCTGTTCTTTT......................	20	3	8.67	0.00	8.67	0.00
............................................................................................CATCACAGTGGCTGTTCTTTT......................	21	3	8.67	0.00	8.67	0.00
.............................................................................................TTCACAGTGGCTGTTCTTTTT.....................	21	3	8.33	0.00	8.33	0.00
............................................................................................GATCACAGTGGCTGTTCTTTT......................	21	3	8.33	0.00	8.33	0.00
............................................................................................TATCACAGTGGCTGTTCTCTT......................	21	3	8.00	0.00	8.00	0.00
............................................................................................TACCACAGTGGCTGTTCTTTT......................	21	3	8.00	0.00	8.00	0.00
............................................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	8.00	0.00	8.00	0.00
............................................................................................TATCACAGTGCCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00
...........................................................................................CTATCACAGTGGCTGTTCTTTT......................	22	3	7.67	0.00	7.67	0.00
............................................................................................TATCACAGTGGCTGTTCTTCT......................	21	3	7.67	0.00	7.67	0.00
............................................................................................TATCACAGTGGTTGTTCTTTTTG....................	23	3	7.67	0.00	7.33	0.33
............................................................................................TATCACAGTGGCxxTTCTTTT......................	19	3	7.67	0.00	7.67	0.00
............................................................................................TATCACACTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00
............................................................................................TGTCACAGTGGCTGTTCTTTT......................	21	3	7.33	0.00	7.33	0.00
............................................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	3	7.33	0.00	7.33	0.00
............................................................................................TATCACAGTGGCTCTTCTTTT......................	21	3	7.33	0.00	7.33	0.00

droYak2

TAACCATACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATT--------------------------GAGAAAC--TTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................AGGGAACCTCTGCTGCTGATATA........................................................................................	23	1	43.00	43.00	0.00	0.00	0.00	0.00
........................AGGGAACCTCTGCTGCTGATAT.........................................................................................	22	1	19.00	18.00	0.00	0.00	1.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	5.67	5.67	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	5.67	1.67	0.00	4.00	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	5.00	5.00	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	3.67	3.00	0.00	0.33	0.00	0.33
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	3.67	3.67	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	3.00	0.33	0.00	2.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	2.67	2.67	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.67	2.67	0.00	0.00	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	2.00	2.00	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.67	1.67	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1.67	0.67	0.00	0.00	0.33	0.67
............................................................................................TATCACAGTGACTGTTCTTTT......................	21	3	1.67	1.67	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCCTTTT.....................	22	3	1.33	1.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.33	1.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	1.33	1.33	0.00	0.00	0.00	0.00
........................AGGGAACCTCTGCTGCTGATA..........................................................................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
............................................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	3	1.33	1.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	1.33	1.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTT........................	19	3	1.33	1.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGGTGTTCTTTTT.....................	22	3	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	1.00	0.67	0.00	0.00	0.00	0.33

droEre2

AACCCATACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATT--------------------------GA-AAAC--TCCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
........................AGGGAACTGCTGCTGCTGATATA........................................................................................	23	1	30.00	0.00	0.00	30.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	7.67	1.67	0.00	0.67	5.33
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	6.00	4.00	0.00	2.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	6.00	3.33	0.00	2.67	0.00
........................AGGGAACCTCTGCTGCTGATATA........................................................................................	23	1	13.00	13.00	0.00	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	3.00	2.67	0.00	0.33	0.00
........................AGGGAACCTCTGCTGCTGATAT.........................................................................................	22	1	9.00	9.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.67	1.67	0.00	1.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	2.67	2.33	0.00	0.33	0.00
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.00	0.67	0.00	1.33	0.00
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	2.00	0.67	0.00	1.33	0.00
............................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	2.00	1.00	0.00	1.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	2.00	0.33	0.00	1.67	0.00
............................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	1.67	0.33	0.00	0.00	1.33
........................AGGGAACCTCTGCTGCTGATA..........................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	1.67	1.00	0.00	0.67	0.00
............................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	1.25	1.00	0.00	0.25	0.00
............................................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	1.33	0.67	0.00	0.67	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	3	1.00	1.00	0.00	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	1.00	1.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	1.00	1.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	1.00	0.33	0.00	0.67	0.00
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	1.00	0.33	0.00	0.33	0.33

droAna3

TAT-TATTCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTC---------------TCCCAAAAA-AAAAATC--ACCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCAC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	4.00	0.67	2.67	0.00	0.67
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	3.67	2.33	1.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	3.33	2.67	0.67	0.00	0.00
........................AGGGAACTGTTGCTGCTGATATA........................................................................................	23	1	9.00	0.00	1.00	0.00	8.00
............................................................................................TATCACAGTGGCTGTTCTT........................	19	3	1.67	0.67	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	1.00	0.33	0.00	0.00	0.67
........................AGGGAACTGTTGCTGCTGATAT.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	1.00	0.33	0.33	0.00	0.33
............................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	0.50	0.00	0.00	0.00	0.50
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	0.67	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	0.67	0.33	0.33	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.67
............................................................................................TATAACAGTGGCTGTTCTTTT......................	21	3	0.33	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGGCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGACTGTTCTTTTTT....................	23	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTCT.........................	18	3	0.33	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGCTCCTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTTTTGTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
............................................................................................GATCACAGTGGCTGTGCT.........................	18	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	0.25	0.00	0.25	0.00	0.00
............................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGATGTTCTTT.......................	20	3	0.33	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTGTTTTTT....................	23	3	0.33	0.00	0.00	0.00	0.33
........................AGGGAACGGTTGCTGCTGATGTA........................................................................................	23	2	0.50	0.00	0.00	0.00	0.50
........................AGGGAACTGTTTCTGCTTATATA........................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGTTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
........................ATGGAACTGTTGCTGCTGATATA........................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	3	0.33	0.00	0.33	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
........................AGGGGACTGTTGCTGCTGATGTA........................................................................................	23	1	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACATTGTCTGTTCTTTT......................	21	3	0.33	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTC......................	21	3	0.33	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTCTGTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTCTTCTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGTTTTTGT......................	21	3	0.33	0.00	0.00	0.33	0.00
.................................................ATTC---------------TCGCAAAAA-AAAAAT...................................................	19	1	1.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTGCTTTT......................	21	3	0.33	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGTCCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGCGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	0.33	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	3	0.33	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTGTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33
........................GGGGAACTGTTGCTGCTGA............................................................................................	19	1	1.00	1.00	0.00	0.00	0.00

dp4

TCCCCGTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCC---------------ACCCATCTTTG--ACAT--TTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................AGGGAACCGCTGCTGCTGATATA........................................................................................	23	1	27.00	0.00	27.00	0.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	4.00	0.00	4.00	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	3.67	0.00	3.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	3.33	0.00	3.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	3.33	2.33	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	3.00	0.00	3.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.67	0.00	2.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	2.33	1.67	0.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.67	0.00	1.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	1.67	0.00	1.67	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	1.33	0.00	1.33	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTTTT....................	23	3	1.33	0.00	1.33	0.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTT.......................	20	3	1.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	1.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTGTT........................	19	3	1.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.00	0.00	1.00	0.00	0.00
...............................................TTATCC---------------ACCCATCTTTG--ACAT--TTCT............................................	25	1	3.00	0.00	3.00	0.00	0.00

droPer1

TCCCCGTGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCC---------------ACCCATCTTTG--ACAT--TTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	135.67	0.33	0.00	0.00	0.00	135.33
............................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	98.00	0.00	0.00	0.00	0.00	98.00
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	83.67	0.33	0.67	0.00	0.00	82.67
............................................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	25.67	0.00	0.00	0.00	0.00	25.67
............................................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	16.67	0.33	0.00	0.00	0.00	16.33
............................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	11.33	0.00	0.00	0.00	0.00	11.33
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	10.67	0.00	0.00	0.00	0.00	10.67
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	8.33	5.00	0.00	0.00	0.33	3.00
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	4.33	1.67	0.00	0.00	0.00	2.67
........................AGGGAACCGCTGCTGCTGATAT.........................................................................................	22	1	12.00	0.00	2.00	0.00	0.00	10.00
............................................................................................TATCACATTGGCTGGTCTTTTT.....................	22	3	3.67	0.00	0.00	0.00	0.00	3.67
........................AGGGAACCGCTGCTGCTGATATA........................................................................................	23	1	8.00	0.00	4.00	0.00	0.00	4.00
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	2.67	0.00	0.00	0.00	0.00	2.67
............................................................................................TATCACAGTGGCTGGTTTTT.......................	20	3	2.67	0.00	0.00	0.00	0.00	2.67
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	2.67	0.00	1.67	0.00	0.33	0.67
............................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	2.33	0.33	0.00	0.00	0.00	2.00
........................AGGGAACTGTTGCTGCTGATATA........................................................................................	23	2	3.50	0.00	0.00	0.00	0.00	3.50
............................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	2.00	0.00	0.33	0.00	0.33	1.33
............................................................................................TATCACAGTGGCTGGTCTT........................	19	3	1.67	0.00	0.33	0.00	0.00	1.33
............................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	1.25	0.50	0.00	0.00	0.00	0.75
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	1.33	0.00	1.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTTTTCTTTTTG....................	23	3	1.33	0.00	0.00	0.00	0.00	1.33
............................................................................................TATCACAGTGGCTGGTCT.........................	18	3	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	1.00	1.00	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	0.67	0.00	0.33	0.00	0.33	0.00
............................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	0.67	0.00	0.00	0.00	0.00	0.67
...........................................................................................CTATCACAGTGGCTGGTCTT........................	20	3	0.67	0.00	0.00	0.00	0.00	0.67
............................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
...........................................................................................ATATCACAGTGGCTGGTCTTTT......................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTGGTCTTTTTC....................	23	3	0.67	0.00	0.00	0.00	0.00	0.67
............................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	0.67	0.00	0.67	0.00	0.00	0.00
............................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	0.67	0.00	0.00	0.00	0.00	0.67
............................................................................................TATCACAGTGGCTAATCTTTTT.....................	22	3	0.67	0.00	0.67	0.00	0.00	0.00
.........................GGAAACCGCTGCCGCTGA............................................................................................	18	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGCGGCTGGTCTTT.......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACGGTGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTxTTCTTTTTG....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	0.25	0.00	0.25	0.00	0.00	0.00
.............................................................................................ATCACAGTGGCTGGTCTTTTT.....................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTGTT........................	19	3	0.33	0.00	0.33	0.00	0.00	0.00
...........................................................................................ATATCACAGTGGCTGGTTTTTTT.....................	23	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGCGGCTGGTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
.............................................................................................ATCACAGTGGCTGGTCTTTTTT....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACxxTGGCTGTTCTTTTT.....................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTCGTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCGCAGTGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGCCTGGTCTTT.......................	20	3	0.33	0.00	0.00	0.00	0.33	0.00
........................AGGGAACCGCTGCTGCTGATATAA.......................................................................................	24	1	1.00	0.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTTTTCTT........................	19	3	0.33	0.00	0.00	0.00	0.00	0.33
..................AACCGCAGGGTACCGTTGCT.................................................................................................	20	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGAGCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.33	0.00
............................................................................................TATCACGGTGGCTGTTCTTT.......................	20	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTTTTCT.........................	18	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTCCT........................	19	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	0.33	0.00	0.33	0.00	0.00	0.00
........................AGGGAACCGCTGCTGCTGATA..........................................................................................	21	1	1.00	0.00	1.00	0.00	0.00	0.00
............................................................................................TATCACxxTGGCTGTTCTTTT......................	19	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGGGGCTGTTCTTTTTT....................	23	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTCTTTTTG....................	23	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTATTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TACCACAGTGGCTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGGCTTT.......................	20	3	0.33	0.00	0.33	0.00	0.00	0.00
.............................................................................................ATCACAGTGGCTGGTCTTTTTG....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGTTCTTC.......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33
...........................................................................................ATATCACAGTGGCTGGTTTTTT......................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACATTGACTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACATTGGCTGTTCTTTT......................	21	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACATTGGCTGTTTTTTTT.....................	22	3	0.33	0.00	0.00	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	0.33	0.00	0.00	0.00	0.00	0.33

droWil1

TT---------------TAACCGCAGGGAACTGTCGCTGCTGtTtTtTtTtTtTTtTTGTTtTtTtTttTTTttt---ttTGATT--TTCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	34553.33	0.00	34551.67	1.67	0.00
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	8102.33	0.33	8101.33	0.67	0.00
............................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	1149.00	1.67	1147.00	0.33	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTA....................	23	3	1096.00	0.00	1096.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	575.33	0.00	570.67	4.00	0.67
............................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	515.33	0.00	515.00	0.33	0.00
............................................................................................TATCACAGTGGCTGTTCTT........................	19	3	318.00	0.00	316.67	1.33	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTAA...................	24	3	215.33	0.00	215.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTA.....................	22	3	188.33	0.00	188.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCT.........................	18	3	127.33	0.00	127.33	0.00	0.00
............................................................................................TATCACAGCGGCTGTTCTTTTT.....................	22	3	91.33	0.00	91.33	0.00	0.00
............................................................................................TATCACAGTGGCTxTTCTTTTT.....................	21	3	89.00	0.00	88.67	0.33	0.00
............................................................................................TATCACAGTGGATGTTCTTTTT.....................	22	3	80.00	0.00	80.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	75.67	0.00	73.00	1.33	1.33
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	72.00	0.00	72.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	53.75	0.00	53.50	0.25	0.00
............................................................................................TATCACAGTGGCTGTTCCTTTT.....................	22	4	53.25	0.00	53.25	0.00	0.00
............................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	48.50	0.00	48.50	0.00	0.00
............................................................................................TATCACAGTGTCTGTTCTTTTT.....................	22	3	64.00	0.00	64.00	0.00	0.00
............................................................................................TATCACAGTGGCTTTTCTTTTT.....................	22	3	58.33	0.00	58.33	0.00	0.00
............................................................................................TATAACAGTGGCTGTTCTTTTT.....................	22	3	56.67	0.00	56.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTG....................	23	3	53.67	0.00	53.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTATTTTT.....................	22	3	50.33	0.00	50.33	0.00	0.00
........................AGGGAACTGTCGCTGCTGATAT.........................................................................................	22	1	135.00	0.00	135.00	0.00	0.00
................................................................................................ACAGTGGCTGTTCTTTTT.....................	18	3	44.67	0.00	44.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTCTTT.....................	22	3	42.67	0.00	42.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTAA....................	23	3	41.67	0.00	41.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	3	40.00	0.00	40.00	0.00	0.00
............................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	39.33	0.00	39.00	0.33	0.00
............................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	37.67	0.00	37.67	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	35.33	0.00	35.33	0.00	0.00
...........................................................................................CTATCACAGTGGCTGTTCTTTTT.....................	23	3	33.00	0.00	33.00	0.00	0.00
............................................................................................TATCGCAGTGGCTGTTCTTTTT.....................	22	3	32.67	0.00	32.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTCCTTTTT.....................	22	3	32.67	0.00	32.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	3	32.33	0.00	32.33	0.00	0.00
............................................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	3	30.33	0.00	30.00	0.33	0.00
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	30.00	0.00	30.00	0.00	0.00
............................................................................................TATCACAGTGGCCGTTCTTTTT.....................	22	3	29.33	0.00	29.33	0.00	0.00
............................................................................................TACCACAGTGGCTGTTCTTTTT.....................	22	3	29.00	0.00	29.00	0.00	0.00
............................................................................................CATCACAGTGGCTGTTCTTTTT.....................	22	3	27.67	0.00	27.67	0.00	0.00
............................................................................................TATCACACTGGCTGTTCTTTTT.....................	22	3	24.00	0.00	24.00	0.00	0.00
............................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	23.33	0.00	23.33	0.00	0.00
............................................................................................TATCACAGTGGCTxTTCTTTT......................	20	3	23.00	0.00	22.67	0.33	0.00
.............................................................................................ATCACAGTGGCTGTTCTTTTT.....................	21	3	22.67	0.00	22.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCCTTT......................	21	4	16.25	0.00	16.00	0.25	0.00
............................................................................................TATCACAGTGGCTGTTCTTCTT.....................	22	3	21.67	0.00	21.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTCT.....................	22	3	20.67	0.00	20.67	0.00	0.00
........................AGGGAACTGTCGCTGCTGATA..........................................................................................	21	1	61.00	0.00	61.00	0.00	0.00
............................................................................................TATCACAGTGGCxxTTCTTTTT.....................	20	3	20.33	0.00	20.33	0.00	0.00
............................................................................................TATCACAGTGGATGTTCTTTT......................	21	3	19.00	0.00	19.00	0.00	0.00
............................................................................................TATCACAGCGGCTGTTCTTTT......................	21	3	19.00	0.00	19.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTG.....................	22	3	18.67	0.00	18.67	0.00	0.00
............................................................................................TATCACAGTTGCTGTTCTTTT......................	21	4	13.50	0.00	13.50	0.00	0.00
............................................................................................TATTACAGTGGCTGTTCTTTTT.....................	22	3	17.67	0.00	17.67	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	16.33	0.00	16.33	0.00	0.00
............................................................................................TATCACAGTGTCTGTTCTTTT......................	21	3	16.33	0.00	16.33	0.00	0.00
............................................................................................TATCACAGTGGCTATTCTTTTT.....................	22	3	16.00	0.00	16.00	0.00	0.00
............................................................................................TATCACAGTGGCTGATCTTTTT.....................	22	3	16.00	0.00	16.00	0.00	0.00
............................................................................................TGTCACAGTGGCTGTTCTTTTT.....................	22	3	15.67	0.00	15.67	0.00	0.00
............................................................................................TATCATAGTGGCTGTTCTTTTT.....................	22	3	15.67	0.00	15.67	0.00	0.00
............................................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	15.00	0.00	15.00	0.00	0.00
............................................................................................TATCACAGTGGCTCTTCTTTTT.....................	22	3	14.00	0.00	13.67	0.33	0.00
............................................................................................TATCACATTGGCTGTTCTTTT......................	21	3	14.00	0.00	14.00	0.00	0.00
..............................................................................................TATCAGTGGCTGTTCTTTTT.....................	20	3	13.67	0.00	13.67	0.00	0.00
............................................................................................TATCCCAGTGGCTGTTCTTTTT.....................	22	3	13.33	0.00	13.33	0.00	0.00
............................................................................................TATCACAATGGCTGTTCTTTTT.....................	22	3	13.33	0.00	13.33	0.00	0.00
............................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	13.00	0.00	13.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTATTTT......................	21	3	12.67	0.00	12.67	0.00	0.00
............................................................................................TATCACCGTGGCTGTTCTTTTT.....................	22	3	12.00	0.00	12.00	0.00	0.00
............................................................................................TATAACAGTGGCTGTTCTTTT......................	21	3	10.67	0.00	10.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTTA....................	23	3	10.67	0.00	10.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	10.33	0.00	9.67	0.00	0.67
............................................................................................TATCACAGTGGCTTTTCTTTT......................	21	3	10.33	0.00	10.33	0.00	0.00
...........................................................................................CTATCACAGTGGCTGTTCTTTT......................	22	3	10.33	0.00	10.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTTA...................	24	3	10.00	0.00	10.00	0.00	0.00
............................................................................................TATCGCAGTGGCTGTTCTTTT......................	21	3	10.00	0.00	10.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	9.67	0.00	9.00	0.33	0.33
............................................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	3	9.00	0.00	9.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTA......................	21	3	9.00	0.00	9.00	0.00	0.00
............................................................................................GATCACAGTGGCTGTTCTTTTT.....................	22	3	8.67	0.00	8.67	0.00	0.00
...........................................................................................ATATCACAGTGGCTGTTCTTTT......................	22	3	8.67	0.00	8.67	0.00	0.00
............................................................................................TATCACAGTGGCCGTTCTTTT......................	21	3	8.33	0.00	8.33	0.00	0.00
............................................................................................TATCACAGTxGCTGTTCTTTT......................	20	3	8.33	0.00	8.33	0.00	0.00
............................................................................................TATCACAGAGGCTGTTCTTTTT.....................	22	3	8.00	0.00	8.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTTTTTT......................	21	4	6.00	0.00	6.00	0.00	0.00
............................................................................................CATCACAGTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00	0.00
............................................................................................TACCACAGTGGCTGTTCTTTT......................	21	3	7.67	0.00	7.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	7.33	0.00	4.67	1.33	1.33
............................................................................................TATCACAGTGGCTGTTGTTTTT.....................	22	3	7.33	0.00	7.33	0.00	0.00
............................................................................................TAACACAGTGGCTGTTCTTTTT.....................	22	3	7.33	0.00	7.33	0.00	0.00
............................................................................................TATCAAAGTGGCTGTTCTTTTT.....................	22	3	7.00	0.00	7.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTTT...................	24	3	6.67	0.00	6.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTCTT......................	21	3	6.67	0.00	6.67	0.00	0.00
........................AGGGAACTGTCGCTGCTGAT...........................................................................................	20	1	19.00	0.00	19.00	0.00	0.00
............................................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	3	6.33	0.00	6.33	0.00	0.00
..............................................................................................TCACAGTGGCTGTTCTTTTT.....................	20	3	6.33	0.00	6.33	0.00	0.00
...............................................................................................CACAGTGGCTGTTCTTTTT.....................	19	3	6.00	0.00	6.00	0.00	0.00
............................................................................................TATTACAGTGGCTGTTCTTTT......................	21	3	6.00	0.00	6.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTCT......................	21	3	6.00	0.00	6.00	0.00	0.00
............................................................................................TATCACAGTGCCTGTTCTTTT......................	21	3	6.00	0.00	5.67	0.33	0.00

droVir3

TTTCTTATGTGCTT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTAT---------------AGATTAT---A--TCGA--TTCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................AGGGAACTGCTGCTGCTGATATA........................................................................................	23	1	30.00	0.00	0.00	30.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	3.00	0.00	0.00	2.00	0.67	0.33
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	2.67	0.00	0.00	2.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	2.67	2.00	0.00	0.67	0.00	0.00
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	2.00	0.33	0.00	1.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	1.67	1.33	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTTTT.....................	22	3	1.33	0.00	0.00	0.33	1.00	0.00
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	1.33	0.00	0.00	1.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.33	0.00	0.00	1.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTTTTT....................	23	3	1.33	0.00	0.00	0.67	0.00	0.67
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	1.00	0.00	0.00	0.67	0.00	0.33
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCCTTTT.....................	22	3	0.67	0.00	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTGGCTGATCTTTTT.....................	22	3	0.67	0.00	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTT....................	23	3	0.67	0.00	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTT........................	19	3	0.67	0.00	0.33	0.33	0.00	0.00
............................................................................................TATCACAGGGGCTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTCTCTGTTCTTTT......................	21	3	0.67	0.00	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTTC....................	23	3	0.67	0.67	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTT.......................	20	3	0.67	0.00	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.33	0.00	0.33
............................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	0.67	0.00	0.00	0.67	0.00	0.00
............................................................................................TATCACAGTGGCTGGCCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTTGTT.....................	22	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGCCTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAATGGCTGTGCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGGCTTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
........................AGGGAACTGCTGCTGCTGATCTA........................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGACTGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCGTT.......................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACATTGGCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTGTTTTG.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTTC.....................	22	3	0.33	0.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTGTT........................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTGCTTT.......................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTGCCTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTTTC......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTTTTTTT.....................	22	4	0.25	0.00	0.00	0.25	0.00	0.00
..............................................................................................TATCAGTGGCTGTTCTTTTT.....................	20	3	0.33	0.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTCGCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGAGGCTGGTCTTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTGTT........................	19	3	0.33	0.00	0.00	0.33	0.00	0.00
........................AGGGAACTGCTGCTGCTCATCTA........................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTGGCTGTTTTGTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTCTT........................	19	3	0.33	0.33	0.00	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTTTTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCCGGTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGTTGTTCTTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TCTCACAGTGGCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCGCAGTGGCTGTTCTTTTTT....................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TAACACAGTGGCTGTTGTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGCTCTTT.......................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGCCTGTTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTGTTT.......................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGTTGTTCTTTTTT....................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTATTCTTTTTT....................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTGTTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
........................AGGGCACTGCTGCTGCTGATCTA........................................................................................	23	1	1.00	0.00	0.00	1.00	0.00	0.00
............................................................................................TATCACAGTTGCTGTTCTTTTTT....................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGACTGTTCTTT.......................	20	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTAGCTGTTCTTTTTG....................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTTGCTGTTCTTTTT.....................	22	4	0.25	0.00	0.00	0.25	0.00	0.00
............................................................................................TATCACAGTGGCTGTGTTTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTTTTTTTTT....................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGTTGTTCTTTC......................	21	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................CATCACAGTGGGTGTTCTT........................	19	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTGGTCTGTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCAGAGTGGGTGTTCTT........................	19	3	0.33	0.00	0.33	0.00	0.00	0.00
............................................................................................TATCACAGTGGCTATTCTTTTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGCTCTTTTTT....................	23	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACGGTGGCTGGTCTTTT......................	21	3	0.33	0.00	0.00	0.33	0.00	0.00
................................................................................................ACAGTGGCTGTTCTTTTT.....................	18	3	0.33	0.00	0.00	0.33	0.00	0.00
............................................................................................TATCACAGTGGCTGTGCTTGTT.....................	22	3	0.33	0.00	0.00	0.33	0.00	0.00

droMoj3

TATCCAGAGAGA-TTTTTAACCGCAGGGAACTGCTGCTGCTGATATACTATAT-------------------GTATTTG--TCAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................TATCACAGTAGCTGTTCTTTTT.....................	22	3	7.33	0.00	0.00	0.00	7.33
............................................................................................TATCACAGTGACTGTTCTTTTT.....................	22	3	5.67	0.00	0.00	0.00	5.67
........................AGGGAACTGCTGCTGCTGATATA........................................................................................	23	1	17.00	0.00	0.00	0.00	17.00
............................................................................................TATCACAGTGGCTGGTCTTTTT.....................	22	3	4.00	0.33	0.00	0.00	3.67
............................................................................................TATCACAGTAGCTGTTCTTTT......................	21	3	4.00	0.00	0.00	0.00	4.00
............................................................................................TATCACAGTGGCTGGTGTTTT......................	21	3	3.67	0.00	0.00	0.00	3.67
............................................................................................TATCACAGTGGCTGGTGTTT.......................	20	3	3.00	0.00	0.00	0.00	3.00
............................................................................................TATCACAGTGGCTGGTGTTTTT.....................	22	3	2.67	0.00	0.00	0.00	2.67
............................................................................................TATCACAGTGGCTGCTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
............................................................................................TATCACAGTGACTGTTCTTTT......................	21	3	2.67	0.00	0.00	0.00	2.67
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	2.33	0.00	0.00	0.00	2.33
............................................................................................TATCACAGTGGCTGCTCTTTTT.....................	22	3	2.00	0.00	0.00	0.00	2.00
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	2.00	1.67	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGTGTT........................	19	3	2.00	0.00	0.00	0.00	2.00
............................................................................................TATCACGGTGGCTGTTCTTTT......................	21	3	2.00	0.00	0.00	0.00	2.00
........................AGGGAACTGCTGCTGCTGATAT.........................................................................................	22	1	5.00	0.00	1.00	0.00	4.00
............................................................................................TATCACGGTGGCTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACAGTGGCTGGTATTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACAGTGGCCGGTCTTTT......................	21	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACAGTGGCTGGTCTT........................	19	3	1.33	0.00	0.33	0.00	1.00
............................................................................................TATCACAGTGGTTGTTCTTTTT.....................	22	3	1.33	0.00	0.00	0.00	1.33
............................................................................................TATCACAGTGACTGTTCTTTTTC....................	23	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATAACAGTGGCTGTTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	1.00	0.67	0.00	0.00	0.33
............................................................................................TATCACAGTGGCTGGGCTTTTT.....................	22	3	1.00	0.00	0.33	0.00	0.67
............................................................................................TATCACAGTGGCTGGTCGT........................	19	3	1.00	0.00	0.00	0.00	1.00
............................................................................................TATCACAGTxGCTGTTCTTTTT.....................	21	3	1.00	0.00	0.00	0.00	1.00

droGri2

ATTCACCAATGCTT--TTAACCACAGGGAACTGCTGCTGCTGATATACAA--------------------CCATATT-TATACAC--GACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAA	Size	Hit Count	Total Norm	V109 Male body
............................................................................................TATCACAGTGGCTGTTCTTTT......................	21	3	3.00	3.00
............................................................................................TATCACAGTGGCTGTTCTTTTT.....................	22	3	1.67	1.67
............................................................................................TATCACAGTGGCTGTTCTTT.......................	20	3	0.67	0.67
............................................................................................TATCACAGTGGCTGGTCTTTT......................	21	3	0.33	0.33
............................................................................................TATCACTGTGGCTGTTCTTTTT.....................	22	3	0.33	0.33

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image