dme-mir-31a- Best orthologs

dme-mir-31a	chr2R:13671300-13671391 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 13671356-13671378
   star strand at position 13671311-13671332
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:13671285-13671406 -		1	CGATC---------------GTATA-TC---AACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droSim1	chr2R:12409842-12409963 -	LASTZ	1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droSec1	super_1:11168758-11168879 -	LASTZ	1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droYak2	chr2R:15512007-15512128 +	LASTZ	1	CGATC---------------GTATA-GC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACACTCAGCGAG---ATC------------------------------------------
droEre2	scaffold_4845:7899182-7899303 -	LASTZ	1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGC-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droEug1	scf7180000409672:1435483-1435608 +	LASTZ	4	CGATC---------------GTATACCCCAAAAATCTATTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droBia1	scf7180000301754:2904277-2904401 +	LASTZ	4	CGGTC---------------GTATA-GCCACGCTTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-ATTT--TAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droTak1	scf7180000415313:18623-18747 +	LASTZ	4	CGATC---------------GTATA-GCCCCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-ACTT--TAGGAACGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCATCAAG---ATC------------------------------------------
droEle1	scf7180000491214:575197-575322 +	LASTZ	4	TGATC---------------GTTAAAGCCTCACATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droRho1	scf7180000777956:117304-117428 +	LASTZ	4	CGATC---------------GTTTT-AGCCCAAATCAGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGCTCAAT-TGAATAGTCATCGAG---ATC------------------------------------------
droFic1	scf7180000453948:1777290-1777409 +	LASTZ	4	CGATC---------------GTAT------CGAATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACATG---ATC------------------------------------------
droKik1	scf7180000302385:435222-435348 -	LASTZ	4	CGATC---------------ATGGA-TCATGGATTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAGCGAATTTT--GTAGAGCGCTATGCTGCATCTAGTCAGT-TATTCAACAGGAACAGTCAACGAG---ATC------------------------------------------
droAna3	scaffold_13266:10515593-10515725 +	LASTZ	1	CGATC---------------ATATA-GCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATCGAAACTCT----------------------------------
droBip1	scf7180000396428:937261-937384 +	LASTZ	4	CGATC---------------ATATA-GCACAGAATCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT---GAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
dp4	chr3:16483204-16483318 -	LASTZ	1	CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------
droPer1	super_4:278992-279106 +	LASTZ	1	CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------
droWil1	scaffold_180700:4557862-4557981 -	LASTZ	1	CA-TC---------------ATCAT-TA---TCATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAA-------T-A-TTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAAT-AGAGCAATCGACAATATTATC------------------------------------------
droVir3	scaffold_12875:16937652-16937767 -	LASTZ	1	---TC---------------G------CCTCGCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAATCAACAAA---A--------------------------------------------
droMoj3	scaffold_6496:11065442-11065572 +	LASTZ	1	CTATATTTATAAATATTTCGGTTTA-T---CGCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGC-AT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA--------------------------------------------------
droGri2	scaffold_15245:16476618-16476778 -	LASTZ	1	CTCTC---------------GCGAT-TC---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATCT--T-ATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACACTCAACA-T---ATCCATAC-CTGAAATGCTTAGAAACTTGGAGTATCTACGGATTA

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CGATC---------------GTATA-TC---AACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droSim1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droSec1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droYak2	CGATC---------------GTATA-GC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACACTCAGCGAG---ATC------------------------------------------
droEre2	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGC-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droEug1	CGATC---------------GTATACCCCAAAAATCTATTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droBia1	CGGTC---------------GTATA-GCCACGCTTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-ATTT--TAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droTak1	CGATC---------------GTATA-GCCCCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-ACTT--TAGGAACGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCATCAAG---ATC------------------------------------------
droEle1	TGATC---------------GTTAAAGCCTCACATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droRho1	CGATC---------------GTTTT-AGCCCAAATCAGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGCTCAAT-TGAATAGTCATCGAG---ATC------------------------------------------
droFic1	CGATC---------------GTAT------CGAATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACATG---ATC------------------------------------------
droKik1	CGATC---------------ATGGA-TCATGGATTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAGCGAATTTT--GTAGAGCGCTATGCTGCATCTAGTCAGT-TATTCAACAGGAACAGTCAACGAG---ATC------------------------------------------
droAna3	CGATC---------------ATATA-GCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATCGAAACTCT----------------------------------
droBip1	CGATC---------------ATATA-GCACAGAATCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT---GAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
dp4	CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------
droPer1	CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------
droWil1	CA-TC---------------ATCAT-TA---TCATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAA-------T-A-TTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAAT-AGAGCAATCGACAATATTATC------------------------------------------
droVir3	---TC---------------G------CCTCGCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAATCAACAAA---A--------------------------------------------
droMoj3	CTATATTTATAAATATTTCGGTTTA-T---CGCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGC-AT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA--------------------------------------------------
droGri2	CTCTC---------------GCGAT-TC---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATCT--T-ATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACACTCAACA-T---ATCCATAC-CTGAAATGCTTAGAAACTTGGAGTATCTACGGATTA

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	53758.50	8327.50	11969.50	14201.00	19260.50
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	34561.00	574.50	12172.00	12477.50	9337.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	16931.50	42.50	8387.00	7612.00	890.00
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	9625.00	40.00	1872.00	2982.50	4730.50
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	8436.50	2.50	3559.50	3078.00	1796.50
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	5812.50	24.50	80.00	4444.50	1263.50
................................................TGGCAAGATGTCGGCATAGCC...........................................................................................................................	21	2	1723.50	0.00	955.50	676.00	92.00
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	1668.50	249.50	4.50	297.00	1117.50
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	1378.50	4.50	15.50	775.00	583.50
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	695.50	44.00	310.00	285.00	56.50
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	686.50	40.00	265.00	295.50	86.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	557.50	40.50	161.00	268.00	88.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	483.00	2.00	125.00	70.00	286.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	454.50	45.00	152.00	116.00	141.50
................................................TGGCAAGATGTCGGAATAGCC...........................................................................................................................	21	2	449.50	0.00	6.00	327.50	116.00
................................................TGGCAAGATGTCGGCATAGCG...........................................................................................................................	21	2	392.50	0.00	146.50	221.00	25.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	385.00	2.00	184.00	191.00	8.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	351.50	2.00	136.50	169.00	44.00
................................................TGGCAAGATGTCGGCATAGCGG..........................................................................................................................	22	2	345.50	1.00	93.50	145.50	105.50
................................................TGGCAAGATGTCGGAATAGCTGG.........................................................................................................................	23	2	313.00	1.50	2.00	63.00	246.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	259.50	3.50	58.50	32.00	165.50
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	209.00	1.50	53.00	26.50	128.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	177.50	0.50	52.00	22.00	103.00
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	341.00	1.00	190.00	141.00	9.00
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	163.00	0.50	86.00	76.00	0.50
................................................TGGCAAGATGTCGGAATAGCTGAA........................................................................................................................	24	2	161.00	2.00	1.00	21.00	137.00
................................................TGTCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	156.50	0.00	108.50	37.50	10.50
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	145.00	2.50	37.00	25.00	80.50
................................................TGGCAAGATGTCGGAATAGCG...........................................................................................................................	21	2	142.00	0.00	1.00	108.00	33.00
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	125.50	2.50	28.00	13.50	81.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	233.00	194.00	11.00	4.00	24.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	106.00	34.50	3.50	31.00	37.00
................................................TTGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	1	207.00	0.00	48.00	23.00	136.00
................................................TTGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	102.50	0.00	65.00	28.00	9.50
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	98.00	9.00	23.50	19.00	46.50
................................................TGCCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	94.50	0.00	67.50	19.00	8.00
...................................................CAAGATGTCGGCATAGCTGA.........................................................................................................................	20	2	88.50	0.00	25.50	21.50	41.50
................................................TGGCAAGATGTCGGAATAGCA...........................................................................................................................	21	2	88.50	0.00	0.00	88.00	0.50
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	164.00	0.00	79.00	77.00	8.00
.....................................................AGATGTCGGCATAGCTGA.........................................................................................................................	18	2	81.00	0.00	21.50	20.50	39.00
................................................TGGCAAGATTTCGGCATAGCTG..........................................................................................................................	22	2	78.50	0.00	23.50	20.00	35.00
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	147.00	1.00	75.00	55.00	16.00
...............................................TTGGCAAGATGTCGGAATAGCT...........................................................................................................................	22	2	72.50	1.00	1.00	51.50	19.00
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	72.50	1.50	1.50	18.00	51.50
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	70.00	25.50	12.50	17.50	14.50
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	65.50	4.50	20.00	10.50	30.50
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	65.00	7.00	18.50	11.50	28.00
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	63.00	3.00	19.00	33.00	8.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	62.00	1.00	28.50	28.50	4.00
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	61.50	24.00	11.50	10.50	15.50
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	58.00	0.00	1.00	54.00	3.00
................................................TCGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	1	110.00	0.00	20.00	16.00	74.00
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	54.50	18.00	7.00	13.00	16.50
................................................TCGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	54.00	0.00	31.00	17.50	5.50
................................................TGTCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	1	102.00	0.00	27.00	6.00	69.00
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	1	101.00	13.00	38.00	33.00	17.00
................................................TGGCAAGATGTCGGCATAGCTGTA........................................................................................................................	24	1	95.00	0.00	51.00	36.00	8.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	47.00	13.50	4.50	14.50	14.50
..................................................TCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	46.50	0.00	8.50	9.50	28.50
.................................................GGCAAGATGTCGGCATAGCTG..........................................................................................................................	21	2	43.00	0.50	18.00	12.00	12.50
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	41.50	5.00	8.50	6.00	22.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	41.50	14.00	6.00	10.50	11.00
................................................TGTCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	39.50	0.00	14.50	8.50	16.50
................................................TGGCAAGATGGCGGCATAGCTG..........................................................................................................................	22	2	39.00	1.50	17.50	10.50	9.50
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	39.00	2.50	10.50	11.50	14.50
................................................TGGCAAGATGTCGGCATA..............................................................................................................................	18	2	37.50	0.00	18.50	19.00	0.00
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	36.50	8.00	7.00	6.00	15.50
..................................................GCAAGATGTCGGCATAGCT...........................................................................................................................	19	2	35.00	0.00	20.50	11.50	3.00
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	35.00	32.50	0.00	1.00	1.50
.................................................TGCAAGATGTCGGCATAGCTGG.........................................................................................................................	22	1	68.00	0.00	12.00	7.00	49.00
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	33.50	10.00	4.00	9.00	10.50
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	33.00	31.50	0.50	0.00	1.00
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	33.00	6.00	10.00	4.50	12.50
.................................................TGCAAGATGTCGGCATAGCT...........................................................................................................................	20	2	33.00	0.00	24.00	7.50	1.50
................................................TGGCAAGATGTCGGAATACCTGA.........................................................................................................................	23	2	33.00	0.00	0.00	3.00	30.00
................................................TGGCAAGATGTCGGAATAGCTGAC........................................................................................................................	24	2	32.50	0.50	0.00	5.00	27.00
....................................................AAGATGTCGGCATAGCTG..........................................................................................................................	18	2	32.00	0.00	10.50	6.50	15.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	31.00	14.50	3.00	8.00	5.50
................................................TGGCAAGATGTCGGCATAGA............................................................................................................................	20	2	30.50	0.00	15.50	14.50	0.50
................................................TGGCAAGATGTCGGCATATCT...........................................................................................................................	21	2	30.50	0.00	19.00	10.50	1.00
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	30.50	8.50	4.50	7.00	10.50
................................................CGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	29.50	0.00	12.00	10.50	7.00
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	29.00	6.50	7.00	5.00	10.50
................................................TGGCAAGATCTCGGCATAGCTG..........................................................................................................................	22	2	29.00	0.00	11.00	6.00	12.00
................................................TGGCAAGGTGTCGGCATAGCTG..........................................................................................................................	22	2	29.00	2.00	9.00	9.00	9.00
................................................TGGCAAGATGTCGGAATAG.............................................................................................................................	19	2	28.50	1.00	1.00	15.00	11.50
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	28.00	8.50	4.50	8.50	6.50
..................................................GCAAGATGTCGGCATAGCTGG.........................................................................................................................	21	2	27.50	0.50	5.50	4.00	17.50
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	27.50	10.00	4.50	4.50	8.50
................................................TGGCAAGATGCCGGCATAGCTG..........................................................................................................................	22	2	26.00	1.50	7.50	10.00	7.00
................................................TGGCAAGATGTCGGAATATCTGA.........................................................................................................................	23	2	26.00	0.50	0.00	3.00	22.50
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	26.00	11.50	3.00	7.00	4.50
................................................TTGCAAGATGTCGGCATAGC............................................................................................................................	20	2	26.00	0.00	15.00	4.00	7.00
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	26.00	0.50	8.00	9.00	8.50
................................................TGCCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	1	51.00	0.00	8.00	8.00	35.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	25.00	3.50	6.00	2.00	13.50
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	25.00	1.50	6.50	8.50	8.50
................................................TTGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	24.00	0.00	10.50	6.50	7.00
.................................................GGCAAGATGTCGGCATAGCT...........................................................................................................................	20	2	24.00	0.00	14.50	9.50	0.00
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	24.00	2.50	7.00	3.50	11.00
................................................TGGCAAGATGGCGGCATAGCT...........................................................................................................................	21	2	23.50	0.00	11.50	11.50	0.50

droSec1

CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	83406.00	27325.50	43475.50	12605.00
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	8971.50	4429.00	2449.50	2093.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	5565.50	3511.00	433.50	1621.00
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	4341.00	1980.00	2252.00	109.00
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	3297.00	2795.50	358.50	143.00
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	1880.50	964.00	424.50	492.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	1684.00	1143.50	467.50	73.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	767.50	398.00	207.00	162.50
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	764.50	483.00	59.50	222.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	758.00	522.00	1.50	234.50
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	574.50	523.00	31.00	20.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	1024.00	122.00	684.00	218.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	439.50	233.50	64.50	141.50
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	294.50	229.50	54.00	11.00
................................................TGGCAAGATGTCGGCATAGCTGACGTT.....................................................................................................................	27	1	530.00	60.00	395.00	75.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	240.00	111.50	40.00	88.50
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	235.00	200.00	18.50	16.50
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	178.00	58.00	103.50	16.50
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	328.00	202.00	9.00	117.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	162.00	145.50	10.50	6.00
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	155.00	10.50	137.00	7.50
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	137.00	133.00	1.00	3.00
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	266.00	138.00	30.00	98.00
................................................TGGCAAGATGTCGGCATAGCTGACG.......................................................................................................................	25	1	255.00	66.00	136.00	53.00
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	123.50	41.50	65.50	16.50
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	1	242.00	56.00	130.00	56.00
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	121.00	26.00	77.00	18.00
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	114.50	23.50	74.00	17.00
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	110.50	13.00	88.50	9.00
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	109.00	23.00	72.50	13.50
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	107.50	32.50	66.50	8.50
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	106.50	30.00	63.50	13.00
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	97.00	54.50	19.00	23.50
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	95.50	35.00	39.00	21.50
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	90.50	23.50	59.00	8.00
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	88.00	10.50	67.50	10.00
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	88.00	23.50	46.50	18.00
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	86.50	29.00	48.50	9.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	84.00	17.50	56.00	10.50
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	82.50	23.00	44.50	15.00
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	80.50	17.50	54.50	8.50
................................................TGGCATGATGTCGGCATAGCTGA.........................................................................................................................	23	2	76.50	4.00	68.00	4.50
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	74.50	24.50	40.00	10.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	72.50	17.50	34.50	20.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	72.00	24.00	35.50	12.50
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	66.50	23.00	35.50	8.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	66.00	19.50	35.50	11.00
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	64.50	39.50	23.00	2.00
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	61.00	35.50	1.00	24.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	61.00	15.50	38.50	7.00
................................................TGGCAAGATGTCGGAATAGCTGAA........................................................................................................................	24	2	60.50	13.50	44.00	3.00
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	60.00	19.50	31.50	9.00
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	113.00	54.00	15.00	44.00
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	54.50	12.00	34.00	8.50
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	53.00	12.00	35.00	6.00
................................................TGGCCAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	52.00	26.50	20.50	5.00
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	51.50	14.00	31.50	6.00
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	51.00	39.50	10.00	1.50
................................................TGGCAAGATGTCGGAATAG.............................................................................................................................	19	2	48.50	40.50	6.50	1.50
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	48.00	10.50	22.00	15.50
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	46.50	11.00	29.00	6.50
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	46.00	12.00	16.50	17.50
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	45.50	12.50	26.50	6.50
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	44.50	14.00	11.50	19.00
................................................TGGCAAGATGTCGGCATAGCTGACGT......................................................................................................................	26	1	88.00	4.00	65.00	19.00
................................................TGGCAAGATGTCGGCATACCTG..........................................................................................................................	22	2	44.00	35.50	5.00	3.50
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	44.00	9.50	29.50	5.00
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	43.50	19.50	17.00	7.00
................................................TGGCAAAATGTCGGCATAGCTGA.........................................................................................................................	23	2	42.00	9.00	14.50	18.50
................................................TGGCAAGATGTCGGCATTGCTGA.........................................................................................................................	23	2	41.50	3.00	35.00	3.50
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	41.00	9.00	26.00	6.00
................................................TGGCAAGATGTCGGCATAACTG..........................................................................................................................	22	2	41.00	38.00	1.00	2.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	40.50	17.50	18.50	4.50
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	39.50	14.00	9.00	16.50
................................................TGGCAAGATGTCGGCATAGTTGA.........................................................................................................................	23	2	39.50	6.00	31.00	2.50
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	39.00	12.50	12.50	14.00
................................................TGGCAAGATGTCGGCATAACT...........................................................................................................................	21	2	38.50	36.50	0.00	2.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	37.50	5.50	21.00	11.00
..................................................TCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	37.00	9.00	24.00	4.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	36.00	19.00	8.00	9.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	35.00	14.50	12.00	8.50
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	34.50	4.00	18.50	12.00
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	34.00	11.50	17.00	5.50
................................................TGGCAAGCTGTCGGCATAGCTGA.........................................................................................................................	23	2	33.50	10.00	16.50	7.00
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	33.00	10.00	17.00	6.00
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	32.50	15.00	15.50	2.00
................................................TGGCAAGATGTCGGCATATCTG..........................................................................................................................	22	2	32.00	30.00	1.00	1.00
...............................................CTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	31.50	14.00	6.00	11.50
................................................TGGCTAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	30.50	4.00	26.00	0.50
................................................TGGCAAGATxTCGGCATAGCTGA.........................................................................................................................	22	2	30.00	8.00	18.50	3.50
................................................TGGCAAGATGTCGGAATACCTGA.........................................................................................................................	23	2	30.00	25.50	4.50	0.00
................................................TGGCAACATGTCGGCATAGCTGA.........................................................................................................................	23	2	28.50	13.50	11.50	3.50
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	28.00	5.50	14.00	8.50
................................................TGGCxAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	28.00	2.00	25.00	1.00
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	27.50	11.00	10.50	6.00
................................................TGGCAAGATGTCGGCATACCT...........................................................................................................................	21	2	27.50	27.00	0.00	0.50
................................................TGGCAAGATGTCGGAATACCT...........................................................................................................................	21	2	26.50	26.50	0.00	0.00
................................................TGGCAAGAAGTCGGCATAGCTGA.........................................................................................................................	23	2	26.50	1.50	18.50	6.50
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	53.00	34.00	2.00	17.00
................................................TGGCAAGATGTCGGCTTAGCTGA.........................................................................................................................	23	2	26.00	3.50	20.00	2.50
................................................TGGCAAGATGTCGGCATATCT...........................................................................................................................	21	2	25.00	24.50	0.00	0.50

droYak2

CGATC---------------GTATA-GC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACACTCAGCGAG---ATC------------------------------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	32062.00	10454.00	1737.00	13154.00	2345.00	4372.00
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	9469.00	489.50	962.00	2296.00	1195.50	4526.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	5987.00	40.00	805.50	1816.00	1056.50	2269.00
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	1521.50	190.00	17.00	1255.50	36.00	23.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	1507.50	10.50	53.50	228.50	82.00	1133.00
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	1433.50	8.00	8.00	1079.00	26.00	312.50
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	896.50	28.50	2.50	8.00	10.00	847.50
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	819.00	58.00	50.00	482.50	97.00	131.50
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	649.50	23.50	16.00	573.00	33.00	4.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	626.00	0.50	119.00	270.50	143.00	93.00
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	625.50	28.50	63.00	218.00	128.50	187.50
................................................TGGCAAGATGTCGGCATAGCC...........................................................................................................................	21	2	299.50	0.50	1.50	3.00	1.00	293.50
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	291.00	28.50	25.50	152.00	49.50	35.50
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	227.50	1.50	1.50	180.50	1.50	42.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	413.00	310.00	24.00	29.00	49.00	1.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	183.50	46.50	8.00	7.00	88.50	33.50
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	148.00	1.50	29.50	51.00	38.50	27.50
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	228.00	1.00	19.00	50.00	26.00	132.00
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	76.00	0.00	0.50	67.00	1.00	7.50
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	125.00	5.00	8.00	62.00	7.00	43.00
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	56.50	33.50	4.50	1.00	17.50	0.00
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	56.50	16.50	9.50	0.00	28.50	2.00
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	54.50	27.00	6.00	4.50	17.00	0.00
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	52.50	17.50	2.50	21.50	9.00	2.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	52.50	16.00	21.50	4.50	10.50	0.00
................................................TGGCAAGATGTCGGCATAGCG...........................................................................................................................	21	2	51.50	0.00	0.50	0.00	2.00	49.00
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	102.00	1.00	28.00	32.00	38.00	3.00
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	51.00	1.50	2.00	44.50	2.50	0.50
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	47.00	1.00	1.00	14.00	0.50	30.50
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	46.00	17.00	2.50	20.00	6.00	0.50
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	43.50	13.00	2.00	13.50	8.50	6.50
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	42.50	14.50	3.50	14.50	6.50	3.50
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	1	79.00	16.00	8.00	27.00	14.00	14.00
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	36.00	3.50	0.50	11.00	0.50	20.50
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	35.50	5.00	2.00	22.00	1.00	5.50
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	35.00	0.50	0.00	31.50	0.00	3.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	34.50	13.50	5.00	10.50	4.50	1.00
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	34.00	0.50	1.00	7.00	2.50	23.00
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	33.50	12.50	2.00	11.50	4.00	3.50
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	32.50	10.00	2.00	15.00	2.50	3.00
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	32.50	4.00	2.50	16.00	5.50	4.50
................................................TGGCAAGCTGTCGGCATAGCTGA.........................................................................................................................	23	2	32.00	7.50	0.50	20.50	3.50	0.00
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	32.00	14.50	2.50	12.00	1.00	2.00
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	31.50	7.50	0.50	12.50	2.00	9.00
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	31.50	16.00	2.50	10.50	1.50	1.00
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	31.00	0.50	1.50	13.50	0.00	15.50
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	30.00	11.00	8.50	4.50	5.00	1.00
................................................TGGCAAGATGTCGGAATAGCC...........................................................................................................................	21	2	29.00	0.00	0.00	0.50	0.00	28.50
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	29.00	3.00	0.00	19.50	0.50	6.00
................................................TGTCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	28.00	0.00	0.50	2.00	1.00	24.50
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	28.00	4.50	4.00	10.00	5.50	4.00
................................................TGGCAAGATGTCGGCATAGCGG..........................................................................................................................	22	2	27.50	0.50	2.00	0.50	3.50	21.00
................................................TGGCAAGATGGCGGCATAGCTG..........................................................................................................................	22	2	26.50	1.00	5.00	0.50	18.00	2.00
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	25.50	0.00	6.50	8.00	5.50	5.50
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	24.50	10.50	2.00	4.00	4.00	4.00
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	49.00	2.00	1.00	17.00	3.00	26.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	24.00	0.00	0.00	8.00	0.00	16.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	24.00	6.00	2.50	5.50	2.50	7.50
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	23.50	10.50	1.50	8.00	2.00	1.50
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	23.50	4.00	2.50	7.50	7.00	2.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	22.00	12.00	1.00	6.00	3.00	0.00
................................................TTGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	22.00	0.00	0.00	4.00	0.50	17.50
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	22.00	9.50	5.00	4.50	0.50	2.50
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	22.00	10.50	2.00	5.50	1.00	3.00
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	22.00	13.50	2.00	1.50	4.00	1.00
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	21.00	15.00	0.50	2.00	1.50	2.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	20.50	0.50	2.50	8.50	3.50	5.50
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	19.00	5.00	2.00	3.00	1.50	7.50
................................................TGGCAAGATGGCGGCATAGCT...........................................................................................................................	21	2	19.00	0.00	5.00	0.00	13.50	0.50
...............................................CTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	18.00	1.50	3.00	6.00	5.50	2.00
...............................................TTGGCAAGATGTCGGAATAGCT...........................................................................................................................	22	2	18.00	1.00	0.00	8.00	0.00	9.00
................................................TGGCAAGATGTCGGCATATCTG..........................................................................................................................	22	2	17.50	1.00	6.00	1.00	7.00	2.50
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	17.50	2.00	0.00	8.00	3.50	4.00
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	17.50	8.00	1.50	3.00	0.00	5.00
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	17.00	5.50	2.00	4.00	2.00	3.50
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	16.50	1.00	1.50	11.00	2.00	1.00
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	16.50	6.50	1.00	5.00	1.50	2.50
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	16.50	3.50	1.00	5.00	6.00	1.00
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	16.50	6.00	1.00	7.00	2.00	0.50
................................................TGGCAAGATGTCGGAATAGCTGAA........................................................................................................................	24	2	16.50	1.50	1.50	10.50	0.50	2.50
................................................GGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	16.00	6.50	1.50	6.00	2.00	0.00
................................................TGGCAAGATGTCGGAATAG.............................................................................................................................	19	2	15.50	0.00	0.00	15.50	0.00	0.00
................................................TGGCAAGATGCCGGCATAGCTG..........................................................................................................................	22	2	15.00	1.50	1.00	4.50	4.00	4.00
...................................................CAAGATGTCGGCATAGCTGA.........................................................................................................................	20	2	15.00	1.50	0.00	4.50	0.00	9.00
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	15.00	6.50	0.00	7.00	0.50	1.00
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	15.00	5.50	0.50	6.00	2.50	0.50
................................................TGGCCAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	15.00	7.00	2.00	3.00	3.00	0.00
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	15.00	8.50	2.50	3.50	0.50	0.00
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	14.50	6.00	1.00	5.00	2.00	0.50
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	14.00	3.50	0.00	8.00	2.00	0.50
................................................TGGCAAGATGTCTGCATAGCTG..........................................................................................................................	22	2	14.00	0.50	3.00	1.50	3.50	5.50
................................................TGCCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	14.00	0.00	0.50	1.00	0.00	12.50
................................................CGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	13.50	1.00	0.50	4.00	3.00	5.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	13.50	5.00	0.50	4.50	1.00	2.50
................................................TGGCAAGATGTCGGCATCGCTG..........................................................................................................................	22	2	13.00	2.00	2.50	0.00	8.00	0.50
................................................TGGCAAGATGTCTGCATAGCT...........................................................................................................................	21	2	13.00	0.00	3.50	0.50	8.00	1.00
................................................TGGCAAGATTTCGGCATAGCTG..........................................................................................................................	22	2	13.00	0.00	1.50	3.00	0.00	8.50
................................................TGGCAAGATGTCGGCATAGCTGTA........................................................................................................................	24	1	25.00	1.00	3.00	3.00	2.00	16.00
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	12.50	1.50	1.50	3.50	3.50	2.50
................................................TGGCAAGATGTCGGCAGAGCTGA.........................................................................................................................	23	2	12.50	8.50	0.00	1.00	3.00	0.00
................................................TGGCAAGGTGTCGGCATAGCTG..........................................................................................................................	22	2	12.50	1.50	1.00	2.50	4.50	3.00

droEre2

CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGC-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	19988.00	3732.00	1156.50	0.00	15099.50
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	5846.00	261.00	1124.00	0.00	4461.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	2294.00	27.00	626.50	0.00	1640.50
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	546.00	14.50	55.00	0.00	476.50
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	528.50	13.50	33.50	0.00	481.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	667.00	211.00	75.00	0.00	381.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	330.50	4.00	63.00	0.00	263.50
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	315.50	66.00	27.50	0.00	222.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	259.50	10.50	26.00	0.00	223.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	233.50	22.00	28.00	0.00	183.50
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	231.00	105.50	4.00	0.00	121.50
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	221.00	28.50	1.50	0.00	191.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	173.00	16.50	31.50	0.00	125.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	164.00	9.50	0.00	0.00	154.50
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	149.50	4.00	15.50	0.00	130.00
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	141.00	17.50	1.50	0.00	122.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	140.50	6.50	52.00	0.00	82.00
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	125.00	4.00	0.00	0.00	121.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	118.00	23.50	2.00	0.00	92.50
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	116.50	10.00	1.00	0.00	105.50
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	96.00	2.00	19.50	0.00	74.50
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	92.00	17.00	3.00	0.00	72.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	91.50	2.00	0.50	0.00	89.00
................................................TGGCAATATGTCGGCATAGCTGA.........................................................................................................................	23	2	76.50	11.50	0.00	0.00	65.00
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	76.50	11.50	1.00	0.00	64.00
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	143.00	1.00	12.00	0.00	130.00
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	57.00	3.50	1.00	0.00	52.50
................................................TGGCAAGATGTCTGCATAGCTG..........................................................................................................................	22	2	56.50	2.00	1.50	0.00	53.00
................................................TTGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	56.50	0.50	1.00	0.00	55.00
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	85.00	0.00	3.00	0.00	82.00
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	40.50	6.00	1.00	0.00	33.50
................................................TGGCAAGATGTCGGCATATCTG..........................................................................................................................	22	2	39.50	2.50	5.50	0.00	31.50
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	1	79.00	12.00	5.00	0.00	62.00
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	37.00	5.50	2.50	0.00	29.00
................................................TGGCAAGATGTAGGCATAGCTG..........................................................................................................................	22	2	36.00	1.00	0.00	0.00	35.00
................................................TGTCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	34.00	1.00	0.50	0.00	32.50
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	33.00	4.50	1.50	0.00	27.00
................................................TGGAAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	32.50	0.00	0.00	0.00	32.50
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	32.50	6.50	3.00	0.00	23.00
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	31.00	12.50	4.00	0.00	14.50
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	31.00	12.00	2.00	0.00	17.00
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	28.50	1.50	0.50	0.00	26.50
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	28.50	11.00	6.50	0.00	11.00
................................................TGGCAAGATGTCGTCATAGCTG..........................................................................................................................	22	2	27.50	2.00	1.50	0.00	24.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	26.00	7.00	2.00	0.00	17.00
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	25.50	4.50	1.50	0.00	19.50
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	25.50	3.00	0.00	0.00	22.50
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	25.00	4.50	1.50	0.00	19.00
................................................TTGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	25.00	0.50	0.50	0.00	24.00
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	24.50	14.00	1.50	0.00	9.00
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	24.50	7.00	1.00	0.00	16.50
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	24.50	5.50	1.50	0.00	17.50
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	24.00	8.00	1.50	0.00	14.50
................................................TGGGAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	24.00	2.50	1.50	0.00	20.00
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	23.50	4.00	2.50	0.00	17.00
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	23.50	6.50	0.50	0.00	16.50
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	45.00	1.00	1.00	0.00	43.00
................................................TGGCAAGATTTCGGCATAGCTG..........................................................................................................................	22	2	22.00	1.50	1.00	0.00	19.50
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	20.50	10.50	0.00	0.00	10.00
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	20.00	10.50	0.50	0.00	9.00
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	20.00	1.00	2.50	0.00	16.50
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	19.50	12.50	1.00	0.00	6.00
................................................TGGCAAGATGTCTGCATAGCT...........................................................................................................................	21	2	19.50	0.00	1.00	0.00	18.50
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	19.00	4.50	2.50	0.00	12.00
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	19.00	6.00	2.50	0.00	10.50
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	18.50	10.00	1.50	0.00	7.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	17.00	0.50	3.50	0.00	13.00
................................................TGGCAAGATGTCGGCATAGCTGACT.......................................................................................................................	25	1	34.00	2.00	1.00	0.00	31.00
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	17.00	8.00	0.00	0.00	9.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	16.50	1.00	0.00	0.00	15.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	16.50	2.50	0.00	0.00	14.00
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	16.00	0.00	5.50	0.00	10.50
................................................TGGCAAGATGTCGGCATAGCTGACG.......................................................................................................................	25	1	32.00	6.00	2.00	0.00	24.00
................................................TGGCAAGATGTCGGCATAGATG..........................................................................................................................	22	2	16.00	0.00	1.00	0.00	15.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	16.00	4.00	1.00	0.00	11.00
....................................................AAGATGTCGGCATAGCTG..........................................................................................................................	18	2	14.50	0.50	0.00	0.00	14.00
...............................................CTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	14.50	1.00	1.50	0.00	12.00
................................................TGGCAATATGTCGGCATAGCTG..........................................................................................................................	22	2	14.50	0.00	0.00	0.00	14.50
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	14.50	4.50	0.50	0.00	9.50
................................................TGGAAAGATGTCGGCATAGCT...........................................................................................................................	21	2	14.50	0.00	0.00	0.00	14.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	14.00	6.50	0.00	0.00	7.50
................................................TGGCAAGATGTCGTCATAGCT...........................................................................................................................	21	2	14.00	0.00	0.50	0.00	13.50
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	13.50	3.50	1.00	0.00	9.00
................................................TGACAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	13.50	0.50	0.50	0.00	12.50
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	13.50	3.50	1.00	0.00	9.00
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	27.00	1.00	9.00	0.00	17.00
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	13.50	3.50	0.50	0.00	9.50
................................................TGGCAAGATGTCGGCATATCT...........................................................................................................................	21	2	13.00	0.00	1.50	0.00	11.50
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	13.00	7.50	1.00	0.00	4.50
................................................TGGCAAGATGGCGGCATAGCTG..........................................................................................................................	22	2	12.50	1.00	6.00	0.00	5.50
................................................TGGCCAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	12.50	3.00	1.00	0.00	8.50
.................................................................................................CGCTATGCTGCATCTAGTCAG..........................................................................	21	1	24.00	4.00	1.00	0.00	19.00
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	12.00	0.00	1.00	0.00	11.00
................................................TGGCAAGATGTCAGCATAGCTG..........................................................................................................................	22	2	11.50	1.50	2.50	0.00	7.50
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	11.50	3.00	3.00	0.00	5.50
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	11.00	1.00	1.50	0.00	8.50
................................................TGTCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	10.50	0.00	0.00	0.00	10.50
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	10.50	1.50	0.00	0.00	9.00
................................................TGGCAAGATGTCTGCATAGCTGAT........................................................................................................................	24	1	20.00	0.00	0.00	0.00	20.00
................................................TGGCAAGATGTAGGCATAGCT...........................................................................................................................	21	2	10.00	0.00	0.00	0.00	10.00
................................................CGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	9.50	0.50	1.50	0.00	7.50

droEug1

CGATC---------------GTATACCCCAAAAATCTATTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------

Size

Hit Count

Total Norm

droBia1

CGGTC---------------GTATA-GCCACGCTTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-ATTT--TAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------

Size

Hit Count

Total Norm

droTak1

CGATC---------------GTATA-GCCCCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-ACTT--TAGGAACGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCATCAAG---ATC------------------------------------------

Size

Hit Count

Total Norm

droEle1

TGATC---------------GTTAAAGCCTCACATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------

Size

Hit Count

Total Norm

droRho1

CGATC---------------GTTTT-AGCCCAAATCAGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGCTCAAT-TGAATAGTCATCGAG---ATC------------------------------------------

Size

Hit Count

Total Norm

droFic1

CGATC---------------GTAT------CGAATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACATG---ATC------------------------------------------

Size

Hit Count

Total Norm

droKik1

CGATC---------------ATGGA-TCATGGATTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAGCGAATTTT--GTAGAGCGCTATGCTGCATCTAGTCAGT-TATTCAACAGGAACAGTCAACGAG---ATC------------------------------------------

Size

Hit Count

Total Norm

droAna3

CGATC---------------ATATA-GCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATCGAAACTCT----------------------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	41131.50	27187.00	10159.00	3345.50	440.00
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	7106.50	4575.50	1159.50	1337.00	34.50
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	5193.50	3801.00	549.00	838.50	5.00
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	2512.00	1765.50	576.00	167.50	3.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	1427.00	983.50	238.00	204.50	1.00
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	1313.50	840.50	299.50	171.00	2.50
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	696.50	545.50	76.50	54.50	20.00
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	582.00	535.00	16.50	29.50	1.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	447.00	326.00	56.50	63.50	1.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	380.00	222.00	87.50	69.00	1.50
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	723.00	515.00	179.00	28.00	1.00
................................................TGGCAAGATGTCGGCATAGCAGA.........................................................................................................................	23	2	336.00	272.50	62.50	1.00	0.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	330.00	197.00	121.50	8.50	3.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	322.00	272.00	12.00	36.00	2.00
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	259.00	84.50	173.00	1.00	0.50
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	238.00	143.50	85.50	8.00	1.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	234.50	202.00	28.00	4.00	0.50
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	233.50	148.00	80.50	5.00	0.00
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	454.00	275.00	125.00	54.00	0.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	201.50	177.00	18.50	6.00	0.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	177.00	131.00	21.50	24.50	0.00
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	172.50	113.50	53.00	4.50	1.50
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	167.50	130.50	30.50	5.50	1.00
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	287.00	207.00	36.00	42.00	2.00
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	136.50	128.00	2.50	5.50	0.50
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	132.50	94.00	31.50	5.00	2.00
................................................TGGCAAGATGTCGGCATAGCGGA.........................................................................................................................	23	2	121.50	106.00	6.00	9.00	0.50
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	109.00	83.00	22.50	3.00	0.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	217.00	34.00	83.00	73.00	27.00
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	108.00	88.50	1.00	18.50	0.00
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	106.50	90.00	12.50	3.50	0.50
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	1	212.00	71.00	109.00	32.00	0.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	105.00	54.00	30.00	7.00	14.00
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	100.50	89.50	4.00	5.50	1.50
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	193.00	141.00	46.00	6.00	0.00
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	90.00	71.50	11.50	5.50	1.50
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	86.50	52.00	11.00	23.00	0.50
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	85.00	38.00	1.50	43.50	2.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	81.00	12.00	3.50	59.00	6.50
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	76.50	63.00	3.50	7.50	2.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	72.00	60.50	5.00	5.50	1.00
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	67.50	53.50	9.00	4.50	0.50
................................................TGGCAAGATGTCGGCATAGCAG..........................................................................................................................	22	2	64.00	55.00	8.50	0.50	0.00
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	63.50	57.00	3.00	3.50	0.00
................................................TGGCAAGATGTGGGCATAGCTGA.........................................................................................................................	23	2	63.50	62.50	0.00	1.00	0.00
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	59.00	47.50	8.00	3.50	0.00
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	58.00	31.00	18.50	8.50	0.00
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	56.00	49.50	4.00	2.50	0.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	54.50	34.00	20.00	0.50	0.00
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	53.00	17.50	15.00	17.00	3.50
................................................TGGCAAGATGTCGGCATATCTG..........................................................................................................................	22	2	52.50	33.00	14.00	4.50	1.00
................................................TGGCAAGATGTCGGCATAGCTGATTT......................................................................................................................	26	1	102.00	51.00	43.00	8.00	0.00
................................................TGGCAATATGTCGGCATAGCTGA.........................................................................................................................	23	2	50.00	26.00	20.00	2.50	1.50
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	47.50	23.00	19.00	5.00	0.50
................................................TGGCAAGATGTCGGCATATCT...........................................................................................................................	21	2	45.00	35.00	9.00	1.00	0.00
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	44.00	29.50	12.50	1.00	1.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	42.50	32.50	5.50	3.50	1.00
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	42.00	25.50	14.50	2.00	0.00
................................................TGGCAAGATGTCGGCTTAGCTGA.........................................................................................................................	23	2	41.50	38.00	1.50	2.00	0.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	41.50	20.00	17.50	4.00	0.00
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	41.50	23.50	15.00	0.50	2.50
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	40.50	18.50	15.00	6.00	1.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	40.50	31.50	4.00	5.00	0.00
................................................GGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	40.00	24.00	2.50	12.00	1.50
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	39.00	23.50	9.50	5.50	0.50
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	38.50	32.50	3.00	3.00	0.00
................................................TGGCAAGATGTAGGCATAGCTG..........................................................................................................................	22	2	37.50	31.00	2.00	4.50	0.00
................................................TGGCAAAATGTCGGCATAGCTGA.........................................................................................................................	23	2	37.00	33.50	2.50	0.50	0.50
................................................TGGCAAGATGTCGGCATAGATG..........................................................................................................................	22	2	37.00	24.00	10.50	2.00	0.50
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	36.00	22.00	10.50	3.00	0.50
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	35.00	28.50	0.00	6.50	0.00
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	34.50	17.00	4.00	13.00	0.50
................................................TGGAAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	34.50	24.50	8.50	1.50	0.00
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	34.50	19.50	6.50	5.50	3.00
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	34.00	17.00	15.50	0.50	1.00
................................................TGGCAAGATGTCAGCATAGCTG..........................................................................................................................	22	2	34.00	29.50	1.50	3.00	0.00
................................................TGGCAAGATGACGGCATAGCTG..........................................................................................................................	22	2	33.50	24.00	0.50	9.00	0.00
................................................TGGCAAGATGTCGGCATAGCG...........................................................................................................................	21	2	33.00	30.00	1.50	1.50	0.00
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	31.50	16.50	8.00	7.00	0.00
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	31.00	19.50	9.50	2.00	0.00
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	30.50	20.50	6.00	3.50	0.50
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	30.00	9.00	12.00	8.50	0.50
................................................TGTCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	30.00	12.00	17.50	0.50	0.00
................................................TGGCAAGATGTAGGCATAGCT...........................................................................................................................	21	2	30.00	28.00	1.50	0.50	0.00
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	30.00	22.00	2.00	5.00	1.00
................................................TGGCAAGATGTCGGCATAGCAT..........................................................................................................................	22	1	58.00	49.00	7.00	2.00	0.00
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	29.00	10.00	5.00	12.50	1.50
................................................TGGCAAGATGTCTGCATAGCTG..........................................................................................................................	22	2	28.50	21.50	5.00	2.00	0.00
................................................TGGAAAGATGTCGGCATAGCT...........................................................................................................................	21	2	26.50	17.00	4.50	5.00	0.00
................................................TGGCAAGATGTCGTCATAGCT...........................................................................................................................	21	2	26.50	24.50	2.00	0.00	0.00
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	26.50	14.00	1.00	10.00	1.50
................................................TGGCAACATGTCGGCATAGCTGA.........................................................................................................................	23	2	26.50	20.00	4.50	2.00	0.00
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	26.50	10.50	8.50	6.00	1.50
................................................TGGAAAGATGTCGGCATAGATGA.........................................................................................................................	23	1	53.00	30.00	23.00	0.00	0.00
................................................TGGCAAGATGTCGTCATAGCTG..........................................................................................................................	22	2	26.00	18.00	5.00	2.50	0.50
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	26.00	15.50	7.00	3.00	0.50
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	25.50	10.00	2.00	11.50	2.00
................................................TGGCAAGATGTCGGCATAGAT...........................................................................................................................	21	2	25.00	20.00	3.50	1.50	0.00
................................................TGGCAAGATGTCGGCATAGCTGACG.......................................................................................................................	25	1	49.00	31.00	14.00	4.00	0.00
................................................TGGCAAGATGTCGGCATAGCTGAG........................................................................................................................	24	2	24.00	19.00	2.00	3.00	0.00
................................................TGGCAAGATGTCCGCATAGCTG..........................................................................................................................	22	2	24.00	22.50	0.00	1.50	0.00

droBip1

CGATC---------------ATATA-GCACAGAATCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT---GAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------

Size

Hit Count

Total Norm

dp4

CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	27594.50	15098.00	9673.00	2377.00	446.50
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	6148.00	3677.50	657.00	1550.50	263.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	3577.00	2432.00	64.50	967.00	113.50
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	1257.00	1047.50	6.50	50.50	152.50
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	787.50	445.00	227.00	111.50	4.00
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	584.00	369.00	78.00	117.50	19.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	955.00	62.00	737.00	156.00	0.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	446.00	356.00	4.00	82.00	4.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	427.00	267.00	35.50	124.00	0.50
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	410.50	281.00	55.50	72.00	2.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	400.00	173.00	7.00	121.00	99.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	1	501.00	351.00	71.00	77.00	2.00
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	194.00	167.00	1.00	8.00	18.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	166.50	68.50	63.00	26.00	9.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	133.50	86.50	4.00	40.50	2.50
................................................TGGCAAGATGTCGGCATAGCTGAAGTT.....................................................................................................................	27	1	255.00	212.00	28.00	9.00	6.00
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	205.00	148.00	2.00	47.00	8.00
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	83.50	10.50	53.00	3.00	17.00
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	69.50	58.50	5.00	6.00	0.00
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	55.50	0.00	42.50	13.00	0.00
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	52.00	15.00	31.00	5.50	0.50
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	48.00	36.00	0.00	11.50	0.50
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	46.00	43.00	0.00	1.00	2.00
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	46.00	9.00	34.00	3.00	0.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	43.00	9.50	29.00	4.50	0.00
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	43.00	5.00	33.50	4.50	0.00
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	40.00	21.00	15.00	4.00	0.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	38.00	15.00	19.50	3.50	0.00
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	37.00	16.00	19.50	1.00	0.50
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	36.50	16.00	16.50	3.00	1.00
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	34.50	14.00	16.50	4.00	0.00
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	34.00	11.00	20.00	2.50	0.50
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	34.00	21.00	10.00	1.50	1.50
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	31.00	12.00	16.50	2.50	0.00
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	29.50	10.50	16.50	2.50	0.00
................................................TGGCAAGATGTCGGCAGAGCTGA.........................................................................................................................	23	2	28.50	0.00	24.50	4.00	0.00
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	28.50	13.50	12.50	2.00	0.50
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	28.00	11.50	9.50	7.00	0.00
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	55.00	47.00	1.00	6.00	1.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	27.50	11.00	13.00	2.50	1.00
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	25.50	3.00	18.00	4.50	0.00
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	25.00	20.50	2.00	2.50	0.00
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	25.00	8.50	14.50	2.00	0.00
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	24.50	9.00	13.50	1.50	0.50
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	24.50	6.00	16.00	2.50	0.00
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	22.50	7.00	11.00	4.50	0.00
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	22.00	14.50	3.50	3.50	0.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	21.50	9.50	10.00	2.00	0.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	21.00	4.00	17.00	0.00	0.00
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	21.00	3.00	16.50	1.50	0.00
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	20.50	8.50	10.50	1.00	0.50
................................................TGGCAAGATGTCGGCATAGCTGAAG.......................................................................................................................	25	1	40.00	25.00	7.00	7.00	1.00
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	20.00	5.50	11.50	3.00	0.00
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	19.50	11.50	4.50	3.50	0.00
................................................TGGCAAGATGTCGGCATAGCTGAAGT......................................................................................................................	26	1	38.00	22.00	15.00	0.00	1.00
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	35.00	27.00	1.00	7.00	0.00
................................................GGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	17.00	1.50	13.50	2.00	0.00
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	17.00	5.50	6.50	4.50	0.50
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	17.00	4.50	11.00	1.00	0.50
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	16.50	4.00	9.50	2.50	0.50
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	16.50	5.50	8.00	3.00	0.00
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	16.00	2.50	11.50	2.00	0.00
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	16.00	11.00	4.50	0.50	0.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	15.50	5.00	9.50	1.00	0.00
...............................................CTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	15.50	10.00	2.50	3.00	0.00
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	15.00	6.50	6.50	1.50	0.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	14.50	9.00	3.50	1.50	0.50
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	14.00	5.50	6.00	2.50	0.00
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	14.00	4.00	9.00	0.50	0.50
................................................TGGCAAGCTGTCGGCATAGCTGA.........................................................................................................................	23	2	13.50	4.50	8.00	1.00	0.00
................................................TGGCAAGATGTCGGCATTGCTGA.........................................................................................................................	23	2	13.50	1.00	11.50	1.00	0.00
................................................TGGCAAAATGTCGGCATAGCTGA.........................................................................................................................	23	2	13.50	6.50	6.00	0.50	0.50
................................................TGGCCAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	13.00	4.50	6.50	2.00	0.00
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	13.00	7.50	2.50	3.00	0.00
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	13.00	6.50	5.50	1.00	0.00
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	13.00	8.50	1.50	3.00	0.00
.................................................................................................CGCTATGCTGCATCTAGTCAG..........................................................................	21	1	25.00	3.00	21.00	1.00	0.00
................................................TGGCATGATGTCGGCATAGCTGA.........................................................................................................................	23	2	12.50	4.00	7.00	1.50	0.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	12.50	7.50	2.00	1.00	2.00
................................................TGGCAAGATGTCGGCATAGTTGA.........................................................................................................................	23	2	12.50	3.50	8.00	1.00	0.00
................................................TGGCAAGATGTCGGCTTAGCTGA.........................................................................................................................	23	2	12.00	2.50	9.50	0.00	0.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	12.00	6.50	3.50	2.00	0.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	10.50	8.00	0.50	0.00	2.00
................................................TGGCAAGATGTCGGCATAGT............................................................................................................................	20	2	10.50	10.00	0.00	0.50	0.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	10.50	6.50	0.50	3.00	0.50
................................................TGGCAAGATGTCGGCATAGCGGA.........................................................................................................................	23	2	10.50	2.50	6.00	2.00	0.00
................................................CGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	10.00	6.50	0.50	2.00	1.00
................................................TGGCAAGAGGTCGGCATAGCTGA.........................................................................................................................	23	2	10.00	0.50	6.50	3.00	0.00
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	9.50	5.00	3.50	1.00	0.00
................................................TGGCAAGATGTCGGGATAGCTGA.........................................................................................................................	23	2	9.50	2.50	6.50	0.50	0.00
................................................TGGCAAGATGTCGGAATAG.............................................................................................................................	19	2	9.50	8.50	0.00	0.50	0.50
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	19.00	16.00	1.00	2.00	0.00
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	9.50	2.50	2.00	2.00	3.00
................................................TGGCAAGATGTCGGCATAGGTGA.........................................................................................................................	23	2	9.50	0.00	9.00	0.50	0.00
................................................TGACAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	9.00	3.00	0.50	5.50	0.00
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	9.00	4.00	2.00	3.00	0.00
................................................TGGCAAGATGTCGGCATAGCTC..........................................................................................................................	22	2	9.00	4.00	0.50	4.00	0.50
................................................TGGCACGATGTCGGCATAGCTGA.........................................................................................................................	23	2	9.00	4.00	4.50	0.50	0.00
.................................................................................................CGCTATGCTGCATCTAGTCA...........................................................................	20	1	17.00	8.00	1.00	8.00	0.00
................................................TGGCAAGATGTCGGCATAGCAT..........................................................................................................................	22	1	17.00	16.00	0.00	1.00	0.00
................................................TGGCAAGATGTCGGCATAGA............................................................................................................................	20	2	8.50	8.00	0.00	0.50	0.00

droPer1

CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	17924.00	8110.00	1515.00	2311.50	2443.00	3544.50
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	8064.00	2513.50	131.50	1710.00	1864.00	1845.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	4039.00	923.50	16.00	1181.50	1688.00	230.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	720.00	84.00	1.50	118.00	120.50	396.00
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	704.00	8.00	5.50	3.00	12.00	675.50
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	492.00	166.50	13.00	112.00	148.00	52.50
................................................TGGCAAGATGTCGGCATAGCTGAAGTT.....................................................................................................................	27	1	665.00	445.00	5.00	24.00	22.00	169.00
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	324.00	196.00	8.50	46.50	57.50	15.50
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	315.00	93.00	0.50	65.50	155.50	0.50
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	297.50	178.00	2.50	8.50	11.00	97.50
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	1	587.00	354.00	10.00	89.00	97.00	37.00
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	283.00	159.50	29.00	10.00	10.50	74.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	180.50	77.00	0.50	46.00	52.50	4.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	352.00	6.00	163.00	75.00	106.00	2.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	158.50	1.00	5.00	31.50	49.00	72.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	120.00	84.50	13.50	13.50	6.50	2.00
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	85.50	32.50	0.50	2.00	0.50	50.00
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	162.00	70.00	1.00	29.00	48.00	14.00
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	54.50	2.00	4.00	8.00	38.50	2.00
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	53.50	45.50	1.00	2.50	4.00	0.50
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	47.00	9.50	0.00	8.00	29.00	0.50
................................................TGGCAAGATGGCGGCATAGCT...........................................................................................................................	21	2	46.00	0.00	0.00	7.50	38.50	0.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	43.00	8.00	0.00	0.50	0.50	34.00
................................................TGGCAAGATGGCGGCATAGCTG..........................................................................................................................	22	2	41.50	2.00	0.50	4.50	34.00	0.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	36.50	2.00	1.00	1.50	2.50	29.50
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	36.50	12.50	0.00	1.50	3.50	19.00
................................................TGGCAAGATGTCGGCATAGCTGAAGT......................................................................................................................	26	1	69.00	42.00	0.00	3.00	6.00	18.00
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	65.00	42.00	0.00	7.00	10.00	6.00
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	32.50	5.50	3.00	5.50	15.50	3.00
................................................TGGCAAGATGTCGGCATAGCTGAAG.......................................................................................................................	25	1	64.00	42.00	0.00	6.00	5.00	11.00
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	29.50	13.50	2.00	2.50	2.00	9.50
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	25.00	9.50	1.00	3.50	7.00	4.00
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	24.00	5.00	3.50	1.00	1.00	13.50
................................................TGGCAAGATGTCGGCATAGCGG..........................................................................................................................	22	2	22.50	0.00	0.00	0.50	5.00	17.00
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	22.00	6.50	1.00	3.00	9.00	2.50
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	21.50	4.00	0.00	1.50	1.50	14.50
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	21.00	6.00	0.00	0.00	1.00	14.00
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	20.50	7.00	0.50	2.00	8.00	3.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	20.50	10.50	0.00	0.00	0.00	10.00
................................................TGGCAAGATGTCGGCATAGCC...........................................................................................................................	21	2	20.00	0.00	0.00	0.00	4.00	16.00
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	20.00	1.50	2.00	5.50	10.00	1.00
................................................TGGCAAGATGTCGGCATAGCTC..........................................................................................................................	22	2	20.00	1.50	0.00	5.50	13.00	0.00
................................................TGGCAAGATGTCAGCATAGCTG..........................................................................................................................	22	2	18.50	2.50	1.00	3.50	5.00	6.50
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	18.50	3.50	2.50	7.00	4.00	1.50
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	18.50	8.50	2.00	2.50	1.50	4.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	18.50	4.50	2.00	2.50	3.50	6.00
.....................................................AGATGTCGGCATAGCTGA.........................................................................................................................	18	2	18.00	1.00	0.00	0.00	0.50	16.50
................................................TGGCAAGATGTCGGAATAGCTGG.........................................................................................................................	23	2	17.50	0.00	0.50	0.00	0.00	17.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	17.50	5.50	2.00	0.00	5.50	4.50
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	17.50	5.50	2.50	6.00	3.00	0.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	17.50	3.50	4.50	3.00	6.00	0.50
................................................TGGCAAGATGCCGGCATAGCTG..........................................................................................................................	22	2	17.50	4.00	0.00	2.50	9.00	2.00
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	16.50	7.00	2.00	2.50	5.00	0.00
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	16.00	4.50	1.00	2.00	3.50	5.00
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	16.00	8.50	1.00	2.50	2.50	1.50
................................................TGGCAAGATGACGGCATAGCT...........................................................................................................................	21	2	15.50	0.50	0.00	3.00	12.00	0.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	15.00	3.50	2.50	2.00	6.00	1.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	15.00	8.50	1.50	1.00	3.50	0.50
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	15.00	9.00	0.50	1.50	3.00	1.00
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	14.50	6.50	1.00	2.00	5.00	0.00
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	14.50	0.50	6.50	1.00	6.00	0.50
................................................TGTCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	14.50	0.50	0.50	0.00	1.50	12.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	14.00	2.50	0.00	5.50	5.50	0.50
................................................TGGCAAGATGACGGCATAGCTG..........................................................................................................................	22	2	14.00	0.50	0.00	2.50	10.50	0.50
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	13.50	5.50	0.00	0.50	2.00	5.50
................................................TGGCAAGAGGTCGGCATAGCTGA.........................................................................................................................	23	2	13.50	0.00	0.50	1.00	11.50	0.50
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	13.50	4.50	3.00	1.50	2.50	2.00
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	13.50	2.50	2.00	2.50	5.50	1.00
................................................CGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	13.00	2.50	0.00	3.00	6.00	1.50
................................................GGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	13.00	3.50	2.00	1.50	5.50	0.50
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	13.00	2.50	0.00	3.00	5.50	2.00
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	13.00	3.50	0.50	4.50	3.00	1.50
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	12.50	3.50	0.00	0.00	1.50	7.50
................................................TGGCAAGGTGTCGGCATAGCTG..........................................................................................................................	22	2	12.50	2.00	0.00	2.50	6.00	2.00
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	11.50	1.50	1.00	5.00	3.00	1.00
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	23.00	6.00	0.00	3.00	14.00	0.00
................................................TGGCAAGATGCCGGCATAGCT...........................................................................................................................	21	2	11.50	0.00	0.00	1.50	10.00	0.00
................................................TGGCAAGATGTCGGCAGAGCTGA.........................................................................................................................	23	2	11.50	0.00	2.50	1.00	7.00	1.00
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	11.50	0.50	5.00	1.00	5.00	0.00
................................................TGGCAAGAGGTCGGCATAGCTG..........................................................................................................................	22	2	11.50	0.50	0.00	1.50	9.50	0.00
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	11.50	3.00	1.50	1.50	4.00	1.50
...................................................CAAGATGTCGGCATAGCTGA.........................................................................................................................	20	2	11.00	2.50	1.00	1.50	0.50	5.50
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	11.00	1.00	0.00	3.00	6.00	1.00
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	11.00	8.00	1.00	0.50	1.50	0.00
................................................TGGCAAGATGTCTGCATAGCTG..........................................................................................................................	22	2	10.50	2.00	0.00	2.00	3.50	3.00
................................................TGGCAAGATGTCGGCATAGCG...........................................................................................................................	21	2	10.50	0.00	0.00	1.50	5.50	3.50
.................................................GGCAAGATGTCGGCATAGCTG..........................................................................................................................	21	2	10.50	6.50	0.00	2.50	0.50	1.00
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	20.00	11.00	0.00	2.00	4.00	3.00
................................................TGGCAAGATGTCGCCATAGCTG..........................................................................................................................	22	2	10.00	0.50	0.00	2.50	7.00	0.00
................................................TGGCAAGATGTCGTCATAGCTG..........................................................................................................................	22	2	10.00	4.50	0.00	1.00	1.50	3.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	10.00	1.50	1.00	1.50	3.50	2.50
................................................TGGCAAGATGTCGGCATACCTG..........................................................................................................................	22	2	10.00	0.00	0.00	3.00	7.00	0.00
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	2	9.50	3.00	0.50	3.50	2.50	0.00
................................................TGGCAAGATGGCGGCATAGCTGT.........................................................................................................................	23	1	19.00	0.00	0.00	4.00	15.00	0.00
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	9.50	7.50	0.00	1.00	1.00	0.00
...............................................CTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	9.50	0.50	0.00	4.50	4.50	0.00
................................................TGGCAAGATGTCGGCATAGTTGA.........................................................................................................................	23	2	9.50	4.00	1.50	1.00	1.50	1.50
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	9.00	1.50	1.50	4.00	1.50	0.50
................................................TGGCACGATGTCGGCATAGCTG..........................................................................................................................	22	2	9.00	0.00	0.00	7.00	2.00	0.00
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	9.00	2.00	1.00	2.50	3.00	0.50
................................................TGGCAAGATGTCGGAATAGCTGAA........................................................................................................................	24	2	9.00	0.50	0.00	0.50	0.00	8.00

droWil1

CA-TC---------------ATCAT-TA---TCATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAA-------T-A-TTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAAT-AGAGCAATCGACAATATTATC------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	116514.00	24464.00	54778.00	27918.50	9353.50
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	22021.50	4341.00	5382.50	2236.00	10062.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	8836.50	2611.00	632.00	967.00	4626.50
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	3292.50	437.00	107.50	146.00	2602.00
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	2656.00	922.50	1586.00	132.00	15.50
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	1	4254.00	979.00	1705.00	1171.00	399.00
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	1532.00	23.00	49.00	27.00	1433.00
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	1494.00	452.50	232.50	329.00	480.00
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	1139.00	737.00	101.50	22.50	278.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	843.00	257.50	372.50	148.50	64.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT.........................................................................	22	1	1580.00	18.00	1365.00	189.00	8.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	529.50	275.00	227.50	23.50	3.50
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	506.50	258.50	19.50	106.50	122.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	454.50	12.00	39.00	67.50	336.00
...............................................TTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	453.50	63.50	256.00	82.00	52.00
................................................TGGCAAGATGTCGGCATAGCC...........................................................................................................................	21	2	419.50	4.50	1.00	2.00	412.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	351.50	152.50	66.50	56.00	76.50
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	659.00	111.00	211.00	215.00	122.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	298.50	17.50	128.00	34.50	118.50
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	268.50	33.50	138.50	90.00	6.50
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	267.50	196.00	15.00	7.50	49.00
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	228.50	10.50	129.00	87.50	1.50
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	215.50	35.00	85.00	89.00	6.50
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	205.50	12.50	99.00	41.00	53.00
...............................................TTGGCAAGATGTCGGCATAGC............................................................................................................................	21	2	198.50	14.00	7.00	5.00	172.50
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	197.50	8.50	67.00	114.00	8.00
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	184.50	29.00	104.50	50.50	0.50
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	183.00	6.50	62.50	113.50	0.50
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	169.00	5.50	135.50	20.50	7.50
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	161.50	18.00	73.00	50.50	20.00
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	311.00	48.00	18.00	46.00	199.00
...............................................TTGGCAAGATGTCGGCATAGCT...........................................................................................................................	22	2	152.50	5.00	6.50	4.50	136.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	152.50	26.00	37.00	24.50	65.00
...............................................TTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	148.50	13.00	43.50	6.00	86.00
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	144.50	19.00	43.50	41.50	40.50
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	132.00	20.50	56.50	32.00	23.00
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	123.00	20.00	42.00	48.50	12.50
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	123.00	30.50	39.00	32.00	21.50
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	120.50	25.00	57.50	32.50	5.50
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	120.50	21.50	56.00	39.50	3.50
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	115.50	28.50	55.00	25.00	7.00
................................................TGGCCAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	113.50	9.00	74.50	30.00	0.00
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	112.00	22.00	59.00	25.50	5.50
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	111.00	16.50	42.00	45.00	7.50
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	109.50	8.50	81.50	14.50	5.00
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	106.00	20.00	36.50	43.50	6.00
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	101.00	6.50	65.50	17.50	11.50
................................................TGTCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	100.50	3.00	1.50	4.00	92.00
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	100.50	19.50	52.50	20.00	8.50
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	100.00	23.50	44.00	30.50	2.00
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	97.50	10.50	31.00	51.50	4.50
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	95.00	31.00	39.00	18.50	6.50
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	95.00	19.00	14.00	20.50	41.50
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	91.50	6.50	65.50	19.50	0.00
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	91.00	5.50	14.00	70.50	1.00
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	89.50	13.00	26.00	48.00	2.50
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	86.00	13.00	41.00	29.00	3.00
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	84.00	18.00	36.50	29.00	0.50
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	83.50	9.00	23.00	49.50	2.00
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	80.50	12.00	39.00	25.00	4.50
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	79.00	21.00	32.50	21.00	4.50
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	76.00	18.50	37.00	18.50	2.00
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	74.50	8.50	17.50	43.50	5.00
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	73.50	10.50	24.00	37.00	2.00
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	73.50	17.00	34.00	20.00	2.50
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	2	73.00	17.00	7.00	24.00	25.00
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	71.50	14.00	29.50	24.50	3.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	70.00	14.50	34.00	20.50	1.00
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	67.00	11.00	28.50	25.00	2.50
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	64.50	11.00	31.00	22.50	0.00
..............................................ATTGGCAAGATGTCGGCATAGCT...........................................................................................................................	23	1	124.00	7.00	46.00	2.00	69.00
................................................TGGCAAGATGTCGGCATAGCG...........................................................................................................................	21	2	61.00	0.50	0.50	0.00	60.00
................................................TGGCAAGCTGTCGGCATAGCTGA.........................................................................................................................	23	2	60.50	15.00	19.00	26.50	0.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	60.00	15.50	16.50	15.00	13.00
................................................GGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	59.50	6.50	15.50	37.00	0.50
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	58.00	16.00	21.50	14.00	6.50
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	55.50	13.00	20.00	21.50	1.00
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	54.50	12.50	24.50	17.00	0.50
................................................TGGCAAGATGTCGGCATAGCGG..........................................................................................................................	22	2	52.50	1.50	0.50	0.00	50.50
................................................TGGCAATATGTCGGCATAGCTGA.........................................................................................................................	23	2	51.50	4.50	44.00	3.00	0.00
................................................TTGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	50.00	2.50	0.50	2.00	45.00
................................................TGGCAAGATTTCGGCATAGCTG..........................................................................................................................	22	2	50.00	2.50	8.50	2.50	36.50
................................................TGGCAAGATGTCGGCATAGCTGATTT-------...............................................................................................................	26	1	98.00	9.00	37.00	42.00	10.00
..................................................TCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	49.00	6.00	20.00	13.50	9.50
................................................TGGCAAGATGTCGGCATAGTTGA.........................................................................................................................	23	2	47.00	6.00	15.00	24.50	1.50
................................................TGGCAAGATGTCAGCATAGCTG..........................................................................................................................	22	2	45.50	6.50	5.50	6.00	27.50
................................................TGGCAAGATxTCGGCATAGCTGA.........................................................................................................................	22	2	44.50	8.00	24.50	11.50	0.50
...................................................CAAGATGTCGGCATAGCTGA.........................................................................................................................	20	2	43.00	4.50	10.50	10.00	18.00
................................................TGGCACGATGTCGGCATAGCTGA.........................................................................................................................	23	2	42.50	7.50	13.00	21.50	0.50
................................................TGGCAACATGTCGGCATAGCTGA.........................................................................................................................	23	2	38.50	12.50	23.00	2.50	0.50
................................................TGCCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	37.50	2.00	1.50	1.00	33.00
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	36.50	20.00	11.00	2.00	3.50
................................................TGGCAAGATGTCGGCATAGCTC..........................................................................................................................	22	2	34.00	9.00	3.50	4.50	17.00
................................................TGGCAAGATGTCTGCATAGCTG..........................................................................................................................	22	2	34.00	2.00	17.50	2.00	12.50
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	33.50	15.50	2.50	6.00	9.50
................................................TGTCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	33.50	2.00	13.50	4.50	13.50
................................................TGGCATGATGTCGGCATAGCTGA.........................................................................................................................	23	2	32.50	6.00	12.00	14.00	0.50
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	2	31.50	4.50	16.50	5.00	5.50
...............................................TTGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	24	2	31.00	0.00	2.50	1.00	27.50
...............................................CTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	30.50	10.00	11.50	8.00	1.00
................................................TGGCAAGATGCCGGCATAGCTG..........................................................................................................................	22	2	29.50	8.50	10.50	6.50	4.00

droVir3

---TC---------------G------CCTCGCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAATCAACAAA---A--------------------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	54681.50	30066.00	1672.50	12112.00	7907.00	2924.00
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	20326.00	6175.00	1052.50	609.00	9275.00	3214.50
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	11036.00	4470.50	842.50	109.50	4232.00	1381.50
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	3246.50	374.00	55.00	11.50	2063.50	742.50
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	2517.50	27.50	7.00	45.50	1808.50	629.00
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	2060.00	1168.50	5.00	14.00	833.50	39.00
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	1278.00	1043.00	9.00	156.50	67.50	2.00
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	862.50	381.50	89.00	69.50	186.50	136.00
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	848.50	512.00	65.00	98.50	82.50	90.50
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	639.00	381.50	107.50	13.00	84.50	52.50
................................................TGGCAAGATGTCGGCATAGCC...........................................................................................................................	21	2	574.50	5.50	4.50	0.00	400.50	164.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	506.50	458.00	7.00	34.00	6.50	1.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	459.50	302.50	37.50	42.50	47.00	30.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	452.50	275.00	60.50	3.50	84.50	29.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	445.50	199.00	1.50	245.00	0.00	0.00
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	435.00	286.00	1.00	2.50	138.50	7.00
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	435.00	109.00	48.00	12.00	107.00	159.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	190.00	22.50	20.00	99.50	26.00	22.00
................................................TGGCAAGATGTCGGCATAGCTGACG.......................................................................................................................	25	1	331.00	253.00	10.00	45.00	15.00	8.00
................................................TGGCAAGATGTCGGCATAGCG...........................................................................................................................	21	2	165.00	2.00	1.50	0.50	132.50	28.50
................................................TGGCAAGATGTCGGCATAGCGG..........................................................................................................................	22	2	141.50	2.50	2.00	2.00	108.00	27.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	122.00	18.50	0.50	23.00	70.50	9.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	229.00	44.00	70.00	113.00	2.00	0.00
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	104.50	22.50	0.00	28.50	46.50	7.00
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	104.00	56.50	6.00	33.50	6.50	1.50
................................................TGGCAAGATGTCGGCATAGCTGACGTT.....................................................................................................................	27	1	191.00	81.00	4.00	106.00	0.00	0.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	95.00	8.00	3.50	74.00	6.50	3.00
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	90.50	12.50	0.50	71.50	4.50	1.50
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	88.00	72.50	0.00	1.00	14.00	0.50
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	164.00	71.00	12.00	25.00	30.00	26.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	81.50	42.50	3.00	33.50	1.50	1.00
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	78.50	41.00	5.00	21.00	10.50	1.00
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	78.50	43.00	8.50	0.00	18.50	8.50
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	77.50	21.00	4.00	50.50	2.00	0.00
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	76.50	20.50	20.00	33.50	2.00	0.50
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	71.50	48.50	5.50	5.50	7.50	4.50
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	71.00	28.50	3.50	34.50	3.00	1.50
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	68.50	47.00	2.50	18.00	1.00	0.00
................................................TGTCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	65.50	5.50	0.50	0.00	50.00	9.50
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	65.00	23.00	1.00	40.50	0.00	0.50
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	64.00	35.00	2.00	22.50	3.00	1.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	64.00	11.50	1.00	9.50	36.50	5.50
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	61.50	11.00	1.00	44.00	4.50	1.00
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	61.50	38.00	2.00	18.50	2.00	1.00
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	61.00	38.50	0.00	5.00	17.00	0.50
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	59.50	22.00	0.50	31.00	3.00	3.00
...............................................TTGGCAAGATGTCGGAATAGCT...........................................................................................................................	22	2	59.00	22.00	0.00	0.50	33.00	3.50
................................................TGGCAAGATGTCGGAATAGCC...........................................................................................................................	21	2	58.00	1.00	0.00	0.00	54.00	3.00
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	57.00	52.50	0.50	2.00	2.00	0.00
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	56.00	33.00	1.50	15.00	5.00	1.50
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	54.00	8.00	2.00	43.50	0.50	0.00
................................................GGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	54.00	27.50	2.00	23.00	1.50	0.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	51.50	23.00	2.50	20.00	5.00	1.00
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	1	102.00	59.00	5.00	25.00	7.00	6.00
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	100.00	63.00	26.00	1.00	5.00	5.00
................................................TGGCAAGATGTCGGCAAAGCTGA.........................................................................................................................	23	2	49.00	46.50	0.00	2.00	0.00	0.50
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	48.50	18.50	0.00	1.50	22.50	6.00
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	46.00	17.50	2.00	22.50	2.50	1.50
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	45.50	23.00	5.00	0.50	11.50	5.50
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	45.50	21.00	2.00	6.00	12.00	4.50
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	45.50	24.00	1.00	17.50	3.00	0.00
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	45.00	24.00	1.50	15.50	3.00	1.00
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	45.00	12.50	0.50	5.00	20.50	6.50
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	44.00	20.50	2.00	11.50	5.50	4.50
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	43.50	12.00	2.50	20.50	7.00	1.50
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	42.50	14.50	3.50	22.00	1.00	1.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	41.50	17.50	2.50	19.50	1.50	0.50
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	41.00	9.50	1.00	30.50	0.00	0.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	40.50	17.50	1.50	5.00	9.50	7.00
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	40.50	19.50	2.00	14.50	3.00	1.50
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	40.00	13.50	0.50	8.00	16.50	1.50
................................................TGGCAAGATTTCGGCATAGCTG..........................................................................................................................	22	2	38.00	2.50	0.50	2.50	27.50	5.00
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	36.50	9.00	2.50	22.50	2.50	0.00
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	36.00	18.00	2.50	9.00	5.50	1.00
................................................TGGCAATATGTCGGCATAGCTGA.........................................................................................................................	23	2	36.00	4.00	1.00	30.00	1.00	0.00
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	35.50	13.50	2.00	15.50	4.00	0.50
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	35.00	20.00	1.50	9.00	4.00	0.50
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	34.50	5.50	1.00	3.00	22.50	2.50
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	34.50	13.50	4.50	10.50	4.00	2.00
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	34.50	17.00	1.50	14.00	2.00	0.00
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	34.00	13.00	5.50	13.00	2.50	0.00
...................................................CAAGATGTCGGCATAGCTGA.........................................................................................................................	20	2	33.00	4.50	0.00	0.50	21.50	6.50
................................................CGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	32.50	9.00	4.00	3.50	10.50	5.50
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	64.00	26.00	2.00	12.00	15.00	9.00
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	30.50	12.50	5.00	11.00	1.50	0.50
................................................TTGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	29.50	1.50	0.00	0.50	23.00	4.50
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	28.00	13.50	4.00	8.00	1.50	1.00
................................................TGGCAAGATGCCGGCATAGCTG..........................................................................................................................	22	2	27.50	10.50	5.50	1.50	8.50	1.50
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	26.50	5.50	5.00	2.50	10.50	3.00
................................................TGGCAAGATGGCGGCATAGCT...........................................................................................................................	21	2	26.00	5.00	16.50	1.00	2.50	1.00
...............................................TTGGCAAGATGTCGGAATAGC............................................................................................................................	21	2	26.00	11.00	0.00	0.00	14.00	1.00
................................................TGGCAAGATGTCGGCATAGA............................................................................................................................	20	2	25.50	17.50	3.00	0.00	2.50	2.50
.....................................................AGATGTCGGCATAGCTGA.........................................................................................................................	18	2	25.00	0.50	0.00	0.50	17.50	6.50
................................................TGGCAAGATGTCGGAATAG.............................................................................................................................	19	2	24.50	20.50	1.00	0.00	3.00	0.00
................................................TGGCAAGATGTCAGCATAGCTG..........................................................................................................................	22	2	24.50	8.00	3.50	2.50	8.00	2.50
.................................................GGCAAGATGTCGGCATAGCT...........................................................................................................................	20	2	24.00	4.50	1.00	0.00	16.50	2.00
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	23.50	10.50	0.50	10.50	1.00	1.00
...............................................CTGGCAAGATGTCGGCATAGCTG..........................................................................................................................	23	2	23.00	16.50	2.00	2.00	2.50	0.00
................................................TGGCAAGATGGCGGCATAGCTG..........................................................................................................................	22	2	23.00	5.00	9.50	2.50	3.00	3.00
................................................TGGCAAGATGTCGGCATAGCTC..........................................................................................................................	22	2	22.50	8.50	6.50	1.00	4.50	2.00
................................................TGGCAAGATGTCGGCATAGCAGA.........................................................................................................................	23	2	22.00	19.50	0.00	2.00	0.50	0.00

droMoj3

CTATATTTATAAATATTTCGGTTTA-T---CGCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGC-AT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA--------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	42275.00	27453.00	1451.50	1277.00	12093.50
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	5756.50	3704.00	808.50	761.50	482.50
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	5023.50	3353.50	884.00	752.00	34.00
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	999.50	879.50	9.50	10.00	100.50
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	908.00	869.00	21.00	17.50	0.50
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	635.50	488.00	45.50	42.00	60.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	448.00	263.50	92.50	91.00	1.00
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	414.00	269.50	55.00	44.50	45.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	410.50	298.50	50.50	54.00	7.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	720.00	22.00	28.00	24.00	646.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	335.50	245.50	37.00	22.00	31.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	309.00	284.50	6.00	8.00	10.50
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	242.50	235.00	5.00	2.50	0.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	196.50	117.00	38.50	38.00	3.00
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	104.50	6.00	21.00	11.00	66.50
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	91.50	16.50	5.50	3.50	66.00
................................................TGGCAAGATGTCGGCATAGCTGACG.......................................................................................................................	25	1	149.00	108.00	6.00	4.00	31.00
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	69.00	2.00	2.00	9.00	56.00
................................................TGGCAAGATGTCGGCATAGCTGACGTT.....................................................................................................................	27	1	135.00	47.00	1.00	0.00	87.00
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	65.50	46.00	2.00	4.50	13.00
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	129.00	108.00	6.00	3.00	12.00
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	127.00	105.00	6.00	5.00	11.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	60.50	17.00	1.50	12.50	29.50
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	59.50	6.00	3.50	13.50	36.50
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	55.50	24.00	3.50	3.00	25.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	51.50	46.50	0.50	1.00	3.50
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	100.00	62.00	22.00	15.00	1.00
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	48.50	37.50	5.00	1.00	5.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	48.00	21.00	3.50	6.00	17.50
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	47.00	24.00	4.00	3.00	16.00
................................................TGGCAAGATGGCGGCATAGCTGA.........................................................................................................................	23	2	45.00	11.50	11.00	4.50	18.00
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	42.00	39.00	0.00	0.00	3.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	41.50	17.50	2.00	6.50	15.50
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	39.50	15.50	3.50	1.50	19.00
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	37.50	29.00	1.50	1.50	5.50
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	37.00	13.50	1.50	1.00	21.00
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	37.00	20.50	0.50	2.00	14.00
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	34.50	15.50	1.00	4.50	13.50
................................................TGGCAAGATGTCGGAATAGCTT..........................................................................................................................	22	2	34.00	31.50	1.50	1.00	0.00
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	33.00	30.00	0.50	0.50	2.00
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	32.50	10.50	3.00	1.50	17.50
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	31.50	15.50	0.50	2.00	13.50
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	30.50	9.00	0.00	0.50	21.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	29.00	15.50	1.00	4.00	8.50
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	29.00	17.00	1.00	0.50	10.50
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	28.00	15.00	2.00	2.50	8.50
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	27.50	9.50	2.00	0.50	15.50
....................................................AAGATGTCGGCATAGCTGA.........................................................................................................................	19	2	27.00	13.50	1.50	0.00	12.00
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	26.50	5.50	1.00	2.00	18.00
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	26.00	21.00	0.50	0.50	4.00
..................................................GCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	25.50	21.00	1.00	0.00	3.50
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	25.00	7.50	3.00	1.00	13.50
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	25.00	20.50	1.00	1.00	2.50
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	24.50	13.50	2.00	2.00	7.00
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	1	48.00	30.00	2.00	6.00	10.00
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	24.00	10.00	1.00	1.50	11.50
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	23.50	13.00	1.00	1.00	8.50
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	23.00	22.00	0.00	0.00	1.00
................................................TGGCAAGATGGCGGCATAGCT...........................................................................................................................	21	2	23.00	0.50	12.00	10.50	0.00
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	22.50	9.00	1.50	1.50	10.50
................................................TGGCAAGATGACGGCATAGCTGA.........................................................................................................................	23	2	22.50	6.50	2.50	1.50	12.00
................................................TGGCAAGATGTCGGCATAGCA...........................................................................................................................	21	2	22.00	12.50	6.00	3.50	0.00
................................................TGGCAAGATGTCGGCATAGCTTT.........................................................................................................................	23	1	43.00	21.00	12.00	9.00	1.00
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	21.00	18.00	1.00	1.00	1.00
................................................TGGCAAGATGTCGGAATAG.............................................................................................................................	19	2	20.50	19.50	1.00	0.00	0.00
................................................TGGCAAGATGTCGGCATAGCTAA.........................................................................................................................	23	2	20.00	8.50	1.50	1.50	8.50
................................................TGGCAAGATGTCGGCATAACTGA.........................................................................................................................	23	2	19.00	4.00	2.00	1.50	11.50
................................................TGGCAAGATGGCGGCATAGCTG..........................................................................................................................	22	2	19.00	3.00	8.50	5.50	2.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	18.00	11.50	2.00	4.00	0.50
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	17.50	9.50	1.50	2.50	4.00
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	17.50	6.50	3.00	2.00	6.00
................................................TGGCAAGATGTCGGCAGAGCTGA.........................................................................................................................	23	2	17.50	0.00	0.00	0.50	17.00
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	16.50	7.50	2.00	1.00	6.00
................................................TGGCAAGATGTCTGCATAGCT...........................................................................................................................	21	2	16.00	10.00	0.50	5.50	0.00
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	15.00	11.50	0.00	1.50	2.00
................................................AGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	15.00	5.00	3.00	1.00	6.00
................................................TGGCAAGATGGCGGCATAGCTGT.........................................................................................................................	23	1	29.00	0.00	11.00	11.00	7.00
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	14.50	8.00	0.50	0.50	5.50
................................................GGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	14.50	6.50	1.00	1.00	6.00
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	13.50	5.50	2.50	1.00	4.50
................................................TGGCACGATGTCGGCATAGCTGA.........................................................................................................................	23	2	13.00	0.50	1.00	6.00	5.50
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	12.50	5.50	3.50	0.50	3.00
................................................TGGCCAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	12.50	2.00	0.00	1.00	9.50
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	11.50	2.00	1.00	1.00	7.50
................................................TGGCAAGATGTCGGCATAGA............................................................................................................................	20	2	11.50	9.00	1.50	1.00	0.00
................................................TGGCAAGATGTCGGCATAGTTGA.........................................................................................................................	23	2	11.50	4.00	1.00	1.00	5.50
................................................TGGCAAGATGTCGGCATCGCT...........................................................................................................................	21	2	11.50	0.50	2.50	8.50	0.00
................................................TGGCAAGATGTCGGCCTAGCT...........................................................................................................................	21	2	11.00	1.00	3.00	7.00	0.00
................................................TGGCAAGCTGTCGGCATAGCTGA.........................................................................................................................	23	2	11.00	4.50	0.50	0.50	5.50
..................................................TCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	11.00	11.00	0.00	0.00	0.00
................................................TGGCAAGATGTCGGCATAGCTGACT.......................................................................................................................	25	1	21.00	3.00	0.00	1.00	17.00
.................................................................................................CGCTATGCTGCATCTAGTCCGT-........................................................................	22	1	21.00	0.00	1.00	3.00	17.00
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	10.50	7.50	0.50	0.00	2.50
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	10.00	2.50	4.50	3.00	0.00
................................................TGGCAAAATGTCGGCATAGCTGA.........................................................................................................................	23	2	10.00	3.00	0.00	1.50	5.50
................................................TGGCAAGATGTCGGCATTGCTGA.........................................................................................................................	23	2	10.00	2.00	0.00	0.50	7.50
................................................TGGCAAGATGTCGGCATCGCTG..........................................................................................................................	22	2	10.00	0.50	2.50	5.00	2.00
................................................TGGCAAGATGTCGGCATAGGTGA.........................................................................................................................	23	2	10.00	1.00	0.00	0.00	9.00
................................................TGGCAATATGTCGGCATAGCTGA.........................................................................................................................	23	2	10.00	8.50	0.00	0.00	1.50
................................................TGGCAAGATGCCGGCATAGCTG..........................................................................................................................	22	2	9.50	6.00	1.00	2.00	0.50
................................................TGGCAAGATGCCGGCATAGCT...........................................................................................................................	21	2	9.50	4.00	3.50	2.00	0.00

droGri2

CTCTC---------------GCGAT-TC---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATCT--T-ATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACACTCAACA-T---ATCCATAC-CTGAAATGCTTAGAAACTTGGAGTATCTACGGATTA	Size	Hit Count	Total Norm	V109 Male body
................................................TGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	12046.00	12046.00
................................................TGGCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	1596.00	1596.00
................................................TGGCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	1138.00	1138.00
................................................TGGCAAGATGTCGGCATAGCTGAT........................................................................................................................	24	2	566.50	566.50
................................................TGGCAAGATGTCGGAATAGCTGA.........................................................................................................................	23	2	232.00	232.00
................................................TGGCAAGATGTCGGCATAGCTGT.........................................................................................................................	23	2	206.50	206.50
................................................TGGCAAGATGTCGGCATCGCTGA.........................................................................................................................	23	2	150.00	150.00
................................................TGGCAAGATGTCGGCATAGCTGAA........................................................................................................................	24	2	98.00	98.00
................................................TGGCAAGATGTCGGCATAGC............................................................................................................................	20	2	97.50	97.50
................................................TGGCAAGATGTCGGCATAGCTGC.........................................................................................................................	23	2	97.50	97.50
................................................TGGCAAGATGTCGGAATAGCT...........................................................................................................................	21	2	96.50	96.50
................................................TGGCAAGATGTCGGCATTGCTGA.........................................................................................................................	23	2	84.00	84.00
................................................TGGCAAGATGTCGGCATAGCTT..........................................................................................................................	22	2	72.50	72.50
................................................TGGCAAGATGTCGGCATGGCTGA.........................................................................................................................	23	2	71.00	71.00
................................................TGGCAAGATGTCGGAATAGCTG..........................................................................................................................	22	2	71.00	71.00
................................................TGGCAAGATGTCGGCATAGCTGG.........................................................................................................................	23	2	70.00	70.00
................................................TGGCAAGATGTCGGCATAGCTGACG.......................................................................................................................	25	1	101.00	101.00
................................................TGGCAAGATGTCGGCATAGCTGATT.......................................................................................................................	25	1	97.00	97.00
................................................TGGCAAGATGTCGGCATAGCTGACGTT.....................................................................................................................	27	1	96.00	96.00
................................................TGGCACGATGTCGGCATAGCTGA.........................................................................................................................	23	2	43.00	43.00
................................................TGGCAAGACGTCGGCATAGCTGA.........................................................................................................................	23	2	41.50	41.50
................................................TGCCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	38.50	38.50
................................................TGGCAACATGTCGGCATAGCTGA.........................................................................................................................	23	2	30.00	30.00
................................................TGGCAAAATGTCGGCATAGCTGA.........................................................................................................................	23	2	28.00	28.00
................................................TGACAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	28.00	28.00
................................................TGTCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	27.50	27.50
................................................TGGCAAGATGTCGGCATAGCTGTT........................................................................................................................	24	1	53.00	53.00
................................................TGGCAAGAAGTCGGCATAGCTGA.........................................................................................................................	23	2	25.50	25.50
................................................TGGCAAGATGCCGGCATAGCTGA.........................................................................................................................	23	2	24.00	24.00
................................................TGGCAAGATGTCGGCATAG.............................................................................................................................	19	2	21.50	21.50
................................................TGGCAGGATGTCGGCATAGCTGA.........................................................................................................................	23	2	21.50	21.50
................................................TGGCATGATGTCGGCATAGCTGA.........................................................................................................................	23	2	21.00	21.00
................................................TGGCAAGATGTCGGCATCGCTG..........................................................................................................................	22	2	21.00	21.00
................................................TGGCAAGATCTCGGCATAGCTGA.........................................................................................................................	23	2	20.50	20.50
................................................TGGCAAGATGTCGGCATAGCTGAC........................................................................................................................	24	2	19.00	19.00
................................................TGGCAAGATGTCGGCATAGCCGA.........................................................................................................................	23	2	18.00	18.00
...............................................CTGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	24	2	17.50	17.50
................................................TGGCCAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	17.50	17.50
................................................TGGCAAGATGTCGGAATAGC............................................................................................................................	20	2	16.50	16.50
................................................TGGCAAGATGTCGGCATAGCTGAAA.......................................................................................................................	25	2	14.00	14.00
................................................TGGCAAGATGTCGGCATAGCTGAAT.......................................................................................................................	25	1	28.00	28.00
................................................TGGCAAGATGTCGGCATCGCT...........................................................................................................................	21	2	14.00	14.00
................................................TGGCAAGAGGTCGGCATAGCTGA.........................................................................................................................	23	2	14.00	14.00
................................................TGGCAAGATGTCGGCCTAGCTGA.........................................................................................................................	23	2	13.50	13.50
................................................TGGCAAGATGTCGGCATACCTGA.........................................................................................................................	23	2	13.50	13.50
................................................TGGCAAGATGTCCGCATAGCTGA.........................................................................................................................	23	2	12.50	12.50
................................................TGGCAAGATGTCGGCACAGCTGA.........................................................................................................................	23	2	12.00	12.00
................................................TGGCAAGATGTCGGCATAGCTCA.........................................................................................................................	23	2	12.00	12.00
................................................TGGCAAGATGTCGGCATTGCTG..........................................................................................................................	22	2	11.50	11.50
................................................TGGCAAGATGTCGGCATAGCTGATTT......................................................................................................................	26	1	22.00	22.00
................................................TGGCAAGATGTCGGCATGGCTG..........................................................................................................................	22	2	11.00	11.00
................................................TGGCAAGATGTAGGCATAGCTGA.........................................................................................................................	23	2	11.00	11.00
................................................TGGCAAGATGTCAGCATAGCTGA.........................................................................................................................	23	2	10.00	10.00
................................................TAGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	9.50	9.50
................................................TCGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	9.50	9.50
................................................CGGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	9.50	9.50
................................................TGGCAAGATGTTGGCATAGCTGA.........................................................................................................................	23	2	9.50	9.50
.................................................................................................CGCTATGCTGCATCTAGTCAGT-........................................................................	22	1	18.00	18.00
.................................................GGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	9.00	9.00
................................................TGGCAAGATGTCGGAATAGCTGAT........................................................................................................................	24	2	9.00	9.00
................................................TGCCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	9.00	9.00
................................................TGGAAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	8.50	8.50
................................................TGGCAAGATATCGGCATAGCTGA.........................................................................................................................	23	2	8.50	8.50
................................................TGGCAAGATGTCGGCATAGATGA.........................................................................................................................	23	2	8.50	8.50
................................................TGGCAAGCTGTCGGCATAGCTGA.........................................................................................................................	23	2	8.50	8.50
................................................TGGCAAGATGTCGCCATAGCTGA.........................................................................................................................	23	2	8.50	8.50
................................................TGGCAAGATGTCGGCATTGCT...........................................................................................................................	21	2	8.50	8.50
.................................................TGCAAGATGTCGGCATAGCTGA.........................................................................................................................	22	2	8.00	8.00
................................................TGGCAAGATGTCGACATAGCTGA.........................................................................................................................	23	2	8.00	8.00
................................................TGGCAAGGTGTCGGCATAGCTGA.........................................................................................................................	23	2	8.00	8.00
................................................TGGCAAGATGTCGGTATAGCTGA.........................................................................................................................	23	2	7.50	7.50
................................................TGGCAATATGTCGGCATAGCTGA.........................................................................................................................	23	2	7.00	7.00
................................................TGGCAAGATGTCGGCATGGCT...........................................................................................................................	21	2	6.50	6.50
................................................TGGCAAGATGTCGGAATAGCTGT.........................................................................................................................	23	2	6.00	6.00
................................................TGGCAAGATGTCGGCATATCTGA.........................................................................................................................	23	2	6.00	6.00
................................................TGGCACGATGTCGGCATAGCTG..........................................................................................................................	22	2	6.00	6.00
................................................TGGCAAGATTTCGGCATAGCTGA.........................................................................................................................	23	2	6.00	6.00
................................................TGGTAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	5.50	5.50
................................................TGGCAAGATGTCGGCGTAGCTGA.........................................................................................................................	23	2	5.50	5.50
................................................TGGCAAGATGTCGGCATAGCTGCT........................................................................................................................	24	1	11.00	11.00
................................................TGGCAAGATGTCGGCATAGTTGA.........................................................................................................................	23	2	5.50	5.50
................................................TGGCAAGATGTCGGCATCGCTGAT........................................................................................................................	24	1	11.00	11.00
................................................TTGCAAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	5.50	5.50
................................................TGTCAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	5.50	5.50
................................................TGGCAAGACGTCGGCATAGCT...........................................................................................................................	21	2	5.00	5.00
................................................TGGCAAGATGTCTGCATAGCTGA.........................................................................................................................	23	2	5.00	5.00
................................................TGGCGAGATGTCGGCATAGCTGA.........................................................................................................................	23	2	5.00	5.00
................................................TGGCAAGATGTCGGCATAGCTGGT........................................................................................................................	24	1	10.00	10.00
................................................TGGCAACATGTCGGCATAGCTG..........................................................................................................................	22	2	5.00	5.00
................................................TGGCAAGATGTCGGAATAGCTGAA........................................................................................................................	24	2	4.50	4.50
................................................TGGCAAGATGTCGTCATAGCTGA.........................................................................................................................	23	2	4.50	4.50
..................................................TCAAGATGTCGGCATAGCTGA.........................................................................................................................	21	2	4.50	4.50
................................................TGGCAAGACGTCGGCATAGCTG..........................................................................................................................	22	2	4.50	4.50
................................................TGGCAAGATGTCGGCATAGCCG..........................................................................................................................	22	2	4.50	4.50
................................................TGACAAGATGTCGGCATAGCT...........................................................................................................................	21	2	4.50	4.50
................................................TGACAAGATGTCGGCATAGCTG..........................................................................................................................	22	2	4.00	4.00
................................................TGCCAAGATGTCGGCATAGCT...........................................................................................................................	21	2	4.00	4.00
................................................TGGCAAGATGTCGGCATAGCTTA.........................................................................................................................	23	2	4.00	4.00
................................................TGGCAAGATGTCGGCATGGCTGAT........................................................................................................................	24	1	8.00	8.00
................................................TGGCAAGATxTCGGCATAGCTGA.........................................................................................................................	22	2	4.00	4.00
................................................TGGCAAGATGTCGGCATAGCTA..........................................................................................................................	22	2	3.50	3.50

Generated: 04/20/2012 at 05:34:01 EDT

dme-mir-31a

chr2R:13671300-13671391 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup