Possible Orthologs for dme-mir-31a

droSim1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2R:12409842-12409963 -

96.75

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC CGATCGTATAGCACCTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	53758.50	8327.50	11969.50	14201.00	19260.50
............................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	34561.00	574.50	12172.00	12477.50	9337.00
............................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	16931.50	42.50	8387.00	7612.00	890.00
............................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	9625.00	40.00	1872.00	2982.50	4730.50
............................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	8436.50	2.50	3559.50	3078.00	1796.50
............................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	5812.50	24.50	80.00	4444.50	1263.50
............................TGGCAAGATGTCGGCATAGCC.........................................................................	21	2	1723.50	0.00	955.50	676.00	92.00
............................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	1668.50	249.50	4.50	297.00	1117.50
............................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	1378.50	4.50	15.50	775.00	583.50
............................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	695.50	44.00	310.00	285.00	56.50
............................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	686.50	40.00	265.00	295.50	86.00
............................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	2	557.50	40.50	161.00	268.00	88.00
............................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	483.00	2.00	125.00	70.00	286.00
............................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	454.50	45.00	152.00	116.00	141.50
............................TGGCAAGATGTCGGAATAGCC.........................................................................	21	2	449.50	0.00	6.00	327.50	116.00
............................TGGCAAGATGTCGGCATAGCG.........................................................................	21	2	392.50	0.00	146.50	221.00	25.00
............................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	385.00	2.00	184.00	191.00	8.00
............................TGGCAAGATGTCGGCATAG...........................................................................	19	2	351.50	2.00	136.50	169.00	44.00
............................TGGCAAGATGTCGGCATAGCGG........................................................................	22	2	345.50	1.00	93.50	145.50	105.50
............................TGGCAAGATGTCGGAATAGCTGG.......................................................................	23	2	313.00	1.50	2.00	63.00	246.50
............................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	259.50	3.50	58.50	32.00	165.50
............................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	209.00	1.50	53.00	26.50	128.00
.............................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	177.50	0.50	52.00	22.00	103.00
............................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	341.00	1.00	190.00	141.00	9.00
............................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	163.00	0.50	86.00	76.00	0.50
............................TGGCAAGATGTCGGAATAGCTGAA......................................................................	24	2	161.00	2.00	1.00	21.00	137.00
............................TGTCAAGATGTCGGCATAGCT.........................................................................	21	2	156.50	0.00	108.50	37.50	10.50
..............................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	145.00	2.50	37.00	25.00	80.50
............................TGGCAAGATGTCGGAATAGCG.........................................................................	21	2	142.00	0.00	1.00	108.00	33.00
............................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	125.50	2.50	28.00	13.50	81.50
..........................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	233.00	194.00	11.00	4.00	24.00
............................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	106.00	34.50	3.50	31.00	37.00
............................TTGCAAGATGTCGGCATAGCTGG.......................................................................	23	1	207.00	0.00	48.00	23.00	136.00
............................TTGCAAGATGTCGGCATAGCT.........................................................................	21	2	102.50	0.00	65.00	28.00	9.50
................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	98.00	9.00	23.50	19.00	46.50
............................TGCCAAGATGTCGGCATAGCT.........................................................................	21	2	94.50	0.00	67.50	19.00	8.00
...............................CAAGATGTCGGCATAGCTGA.......................................................................	20	2	88.50	0.00	25.50	21.50	41.50
............................TGGCAAGATGTCGGAATAGCA.........................................................................	21	2	88.50	0.00	0.00	88.00	0.50
............................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	164.00	0.00	79.00	77.00	8.00
.................................AGATGTCGGCATAGCTGA.......................................................................	18	2	81.00	0.00	21.50	20.50	39.00
............................TGGCAAGATTTCGGCATAGCTG........................................................................	22	2	78.50	0.00	23.50	20.00	35.00
............................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	147.00	1.00	75.00	55.00	16.00
...........................TTGGCAAGATGTCGGAATAGCT.........................................................................	22	2	72.50	1.00	1.00	51.50	19.00
............................TGGCAAGATGTCGGAATAGCTGAT......................................................................	24	2	72.50	1.50	1.50	18.00	51.50
............................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	70.00	25.50	12.50	17.50	14.50
.............................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	65.50	4.50	20.00	10.50	30.50
............................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	65.00	7.00	18.50	11.50	28.00
............................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	63.00	3.00	19.00	33.00	8.00
............................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	62.00	1.00	28.50	28.50	4.00
............................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	61.50	24.00	11.50	10.50	15.50
............................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	58.00	0.00	1.00	54.00	3.00
............................TCGCAAGATGTCGGCATAGCTGG.......................................................................	23	1	110.00	0.00	20.00	16.00	74.00
............................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	54.50	18.00	7.00	13.00	16.50
............................TCGCAAGATGTCGGCATAGCT.........................................................................	21	2	54.00	0.00	31.00	17.50	5.50
............................TGTCAAGATGTCGGCATAGCTGG.......................................................................	23	1	102.00	0.00	27.00	6.00	69.00
............................TGGCAAGATGTCGGCATAGCTGAC......................................................................	24	1	101.00	13.00	38.00	33.00	17.00
............................TGGCAAGATGTCGGCATAGCTGTA......................................................................	24	1	95.00	0.00	51.00	36.00	8.00
............................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	47.00	13.50	4.50	14.50	14.50
..............................TCAAGATGTCGGCATAGCTGA.......................................................................	21	2	46.50	0.00	8.50	9.50	28.50
.............................GGCAAGATGTCGGCATAGCTG........................................................................	21	2	43.00	0.50	18.00	12.00	12.50
............................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	41.50	5.00	8.50	6.00	22.00
............................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	41.50	14.00	6.00	10.50	11.00
............................TGTCAAGATGTCGGCATAGCTG........................................................................	22	2	39.50	0.00	14.50	8.50	16.50
............................TGGCAAGATGGCGGCATAGCTG........................................................................	22	2	39.00	1.50	17.50	10.50	9.50
............................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	39.00	2.50	10.50	11.50	14.50
............................TGGCAAGATGTCGGCATA............................................................................	18	2	37.50	0.00	18.50	19.00	0.00
............................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	36.50	8.00	7.00	6.00	15.50
..............................GCAAGATGTCGGCATAGCT.........................................................................	19	2	35.00	0.00	20.50	11.50	3.00
............................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	35.00	32.50	0.00	1.00	1.50
.............................TGCAAGATGTCGGCATAGCTGG.......................................................................	22	1	68.00	0.00	12.00	7.00	49.00
............................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	33.50	10.00	4.00	9.00	10.50
............................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	33.00	31.50	0.50	0.00	1.00
............................TGGCAAGATGTCGGCATAACTGA.......................................................................	23	2	33.00	6.00	10.00	4.50	12.50
.............................TGCAAGATGTCGGCATAGCT.........................................................................	20	2	33.00	0.00	24.00	7.50	1.50
............................TGGCAAGATGTCGGAATACCTGA.......................................................................	23	2	33.00	0.00	0.00	3.00	30.00
............................TGGCAAGATGTCGGAATAGCTGAC......................................................................	24	2	32.50	0.50	0.00	5.00	27.00
................................AAGATGTCGGCATAGCTG........................................................................	18	2	32.00	0.00	10.50	6.50	15.00
............................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	31.00	14.50	3.00	8.00	5.50
............................TGGCAAGATGTCGGCATAGA..........................................................................	20	2	30.50	0.00	15.50	14.50	0.50
............................TGGCAAGATGTCGGCATATCT.........................................................................	21	2	30.50	0.00	19.00	10.50	1.00
............................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	30.50	8.50	4.50	7.00	10.50
............................CGGCAAGATGTCGGCATAGCTG........................................................................	22	2	29.50	0.00	12.00	10.50	7.00
............................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	29.00	6.50	7.00	5.00	10.50
............................TGGCAAGATCTCGGCATAGCTG........................................................................	22	2	29.00	0.00	11.00	6.00	12.00
............................TGGCAAGGTGTCGGCATAGCTG........................................................................	22	2	29.00	2.00	9.00	9.00	9.00
............................TGGCAAGATGTCGGAATAG...........................................................................	19	2	28.50	1.00	1.00	15.00	11.50
............................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	28.00	8.50	4.50	8.50	6.50
..............................GCAAGATGTCGGCATAGCTGG.......................................................................	21	2	27.50	0.50	5.50	4.00	17.50
............................TGGTAAGATGTCGGCATAGCTGA.......................................................................	23	2	27.50	10.00	4.50	4.50	8.50
............................TGGCAAGATGCCGGCATAGCTG........................................................................	22	2	26.00	1.50	7.50	10.00	7.00
............................TGGCAAGATGTCGGAATATCTGA.......................................................................	23	2	26.00	0.50	0.00	3.00	22.50
............................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	26.00	11.50	3.00	7.00	4.50
............................TTGCAAGATGTCGGCATAGC..........................................................................	20	2	26.00	0.00	15.00	4.00	7.00
............................TGGCAAGATGTCGGCATAGCCG........................................................................	22	2	26.00	0.50	8.00	9.00	8.50
............................TGCCAAGATGTCGGCATAGCTGG.......................................................................	23	1	51.00	0.00	8.00	8.00	35.00
............................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	25.00	3.50	6.00	2.00	13.50
............................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	25.00	1.50	6.50	8.50	8.50
............................TTGCAAGATGTCGGCATAGCTG........................................................................	22	2	24.00	0.00	10.50	6.50	7.00
.............................GGCAAGATGTCGGCATAGCT.........................................................................	20	2	24.00	0.00	14.50	9.50	0.00
............................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	24.00	2.50	7.00	3.50	11.00
............................TGGCAAGATGGCGGCATAGCT.........................................................................	21	2	23.50	0.00	11.50	11.50	0.50

chrX:16197514-16197519 -

5.0

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
--------------------------------------------------------------------------------------------------------------------GAGATC

Size

Hit Count

Total Norm

V044
Embryo

M023
Head

M024
Male body

M025
Embryo

None

droSec1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_1:11168758-11168879 -

96.75

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC CGATCGTATAGCACCTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	83406.00	27325.50	43475.50	12605.00
............................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	8971.50	4429.00	2449.50	2093.00
............................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	5565.50	3511.00	433.50	1621.00
............................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	4341.00	1980.00	2252.00	109.00
............................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	3297.00	2795.50	358.50	143.00
............................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	1880.50	964.00	424.50	492.00
............................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	1684.00	1143.50	467.50	73.00
............................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	2	767.50	398.00	207.00	162.50
............................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	764.50	483.00	59.50	222.00
............................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	758.00	522.00	1.50	234.50
............................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	574.50	523.00	31.00	20.50
..........................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	1024.00	122.00	684.00	218.00
............................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	439.50	233.50	64.50	141.50
............................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	294.50	229.50	54.00	11.00
............................TGGCAAGATGTCGGCATAGCTGACGTT...................................................................	27	1	530.00	60.00	395.00	75.00
............................TGGCAAGATGTCGGCATAG...........................................................................	19	2	240.00	111.50	40.00	88.50
............................TGGCAAGATGTCGGCATAACTGA.......................................................................	23	2	235.00	200.00	18.50	16.50
............................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	178.00	58.00	103.50	16.50
............................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	328.00	202.00	9.00	117.00
............................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	162.00	145.50	10.50	6.00
............................TGGTAAGATGTCGGCATAGCTGA.......................................................................	23	2	155.00	10.50	137.00	7.50
............................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	137.00	133.00	1.00	3.00
............................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	266.00	138.00	30.00	98.00
............................TGGCAAGATGTCGGCATAGCTGACG.....................................................................	25	1	255.00	66.00	136.00	53.00
...........................CTGGCAAGATGTCGGCATAGCTGA.......................................................................	24	2	123.50	41.50	65.50	16.50
............................TGGCAAGATGTCGGCATAGCTGAC......................................................................	24	1	242.00	56.00	130.00	56.00
............................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	121.00	26.00	77.00	18.00
............................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	114.50	23.50	74.00	17.00
............................TGGCAAGATCTCGGCATAGCTGA.......................................................................	23	2	110.50	13.00	88.50	9.00
............................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	109.00	23.00	72.50	13.50
............................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	107.50	32.50	66.50	8.50
............................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	106.50	30.00	63.50	13.00
............................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	97.00	54.50	19.00	23.50
............................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	95.50	35.00	39.00	21.50
............................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	90.50	23.50	59.00	8.00
............................TGGCAAGATGTCGGTATAGCTGA.......................................................................	23	2	88.00	10.50	67.50	10.00
............................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	88.00	23.50	46.50	18.00
............................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	86.50	29.00	48.50	9.00
.............................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	84.00	17.50	56.00	10.50
............................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	82.50	23.00	44.50	15.00
............................TGGCAGGATGTCGGCATAGCTGA.......................................................................	23	2	80.50	17.50	54.50	8.50
............................TGGCATGATGTCGGCATAGCTGA.......................................................................	23	2	76.50	4.00	68.00	4.50
............................TGGCAAGATGTCGGCACAGCTGA.......................................................................	23	2	74.50	24.50	40.00	10.00
............................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	72.50	17.50	34.50	20.50
............................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	72.00	24.00	35.50	12.50
.............................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	66.50	23.00	35.50	8.00
............................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	66.00	19.50	35.50	11.00
............................TGGCAAGATGTCGGAATAGCTGAT......................................................................	24	2	64.50	39.50	23.00	2.00
............................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	61.00	35.50	1.00	24.50
............................TGGCAAGATGTCGGCGTAGCTGA.......................................................................	23	2	61.00	15.50	38.50	7.00
............................TGGCAAGATGTCGGAATAGCTGAA......................................................................	24	2	60.50	13.50	44.00	3.00
............................TGGCAAGACGTCGGCATAGCTGA.......................................................................	23	2	60.00	19.50	31.50	9.00
............................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	113.00	54.00	15.00	44.00
............................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	54.50	12.00	34.00	8.50
............................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	53.00	12.00	35.00	6.00
............................TGGCCAGATGTCGGCATAGCTGA.......................................................................	23	2	52.00	26.50	20.50	5.00
............................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	51.50	14.00	31.50	6.00
............................TGGCAAGATGTCGGAATAGCTGT.......................................................................	23	2	51.00	39.50	10.00	1.50
............................TGGCAAGATGTCGGAATAG...........................................................................	19	2	48.50	40.50	6.50	1.50
............................TGGCAAGATATCGGCATAGCTGA.......................................................................	23	2	48.00	10.50	22.00	15.50
................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	46.50	11.00	29.00	6.50
............................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	46.00	12.00	16.50	17.50
............................TGGCAAGATGTCGACATAGCTGA.......................................................................	23	2	45.50	12.50	26.50	6.50
............................TGGCAAGATGTCTGCATAGCTGA.......................................................................	23	2	44.50	14.00	11.50	19.00
............................TGGCAAGATGTCGGCATAGCTGACGT....................................................................	26	1	88.00	4.00	65.00	19.00
............................TGGCAAGATGTCGGCATACCTG........................................................................	22	2	44.00	35.50	5.00	3.50
............................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	44.00	9.50	29.50	5.00
............................TGGCAAGATGTCCGCATAGCTGA.......................................................................	23	2	43.50	19.50	17.00	7.00
............................TGGCAAAATGTCGGCATAGCTGA.......................................................................	23	2	42.00	9.00	14.50	18.50
............................TGGCAAGATGTCGGCATTGCTGA.......................................................................	23	2	41.50	3.00	35.00	3.50
............................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	41.00	9.00	26.00	6.00
............................TGGCAAGATGTCGGCATAACTG........................................................................	22	2	41.00	38.00	1.00	2.00
............................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	40.50	17.50	18.50	4.50
............................TGGAAAGATGTCGGCATAGCTGA.......................................................................	23	2	39.50	14.00	9.00	16.50
............................TGGCAAGATGTCGGCATAGTTGA.......................................................................	23	2	39.50	6.00	31.00	2.50
............................TGGCAAGATGTCGGCATAGATGA.......................................................................	23	2	39.00	12.50	12.50	14.00
............................TGGCAAGATGTCGGCATAACT.........................................................................	21	2	38.50	36.50	0.00	2.00
............................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	37.50	5.50	21.00	11.00
..............................TCAAGATGTCGGCATAGCTGA.......................................................................	21	2	37.00	9.00	24.00	4.00
............................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	36.00	19.00	8.00	9.00
............................TGGCAAGATGTCGGCATAGCTTA.......................................................................	23	2	35.00	14.50	12.00	8.50
............................TGGCAAGATGTCGGCATAGCTAA.......................................................................	23	2	34.50	4.00	18.50	12.00
..............................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	34.00	11.50	17.00	5.50
............................TGGCAAGCTGTCGGCATAGCTGA.......................................................................	23	2	33.50	10.00	16.50	7.00
............................TGGCAAGATGTCGGCATAGCTCA.......................................................................	23	2	33.00	10.00	17.00	6.00
............................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	32.50	15.00	15.50	2.00
............................TGGCAAGATGTCGGCATATCTG........................................................................	22	2	32.00	30.00	1.00	1.00
...........................CTGGCAAGATGTCGGCATAGCTG........................................................................	23	2	31.50	14.00	6.00	11.50
............................TGGCTAGATGTCGGCATAGCTGA.......................................................................	23	2	30.50	4.00	26.00	0.50
............................TGGCAAGATxTCGGCATAGCTGA.......................................................................	22	2	30.00	8.00	18.50	3.50
............................TGGCAAGATGTCGGAATACCTGA.......................................................................	23	2	30.00	25.50	4.50	0.00
............................TGGCAACATGTCGGCATAGCTGA.......................................................................	23	2	28.50	13.50	11.50	3.50
............................AGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	28.00	5.50	14.00	8.50
............................TGGCxAGATGTCGGCATAGCTGA.......................................................................	22	2	28.00	2.00	25.00	1.00
............................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	27.50	11.00	10.50	6.00
............................TGGCAAGATGTCGGCATACCT.........................................................................	21	2	27.50	27.00	0.00	0.50
............................TGGCAAGATGTCGGAATACCT.........................................................................	21	2	26.50	26.50	0.00	0.00
............................TGGCAAGAAGTCGGCATAGCTGA.......................................................................	23	2	26.50	1.50	18.50	6.50
............................TGGCAAGATGTCGGCATAGCTTT.......................................................................	23	1	53.00	34.00	2.00	17.00
............................TGGCAAGATGTCGGCTTAGCTGA.......................................................................	23	2	26.00	3.50	20.00	2.50
............................TGGCAAGATGTCGGCATATCT.........................................................................	21	2	25.00	24.50	0.00	0.50

droYak2 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr2R:15512007-15512128 +

94.33

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC CGATCGTATAGCACCTCTGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGATCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACACTCAGCGAGATC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	32062.00	10454.00	1737.00	13154.00	2345.00	4372.00
............................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	9469.00	489.50	962.00	2296.00	1195.50	4526.00
............................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	5987.00	40.00	805.50	1816.00	1056.50	2269.00
............................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	1521.50	190.00	17.00	1255.50	36.00	23.00
............................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	1507.50	10.50	53.50	228.50	82.00	1133.00
............................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	1433.50	8.00	8.00	1079.00	26.00	312.50
............................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	896.50	28.50	2.50	8.00	10.00	847.50
............................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	819.00	58.00	50.00	482.50	97.00	131.50
............................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	649.50	23.50	16.00	573.00	33.00	4.00
............................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	626.00	0.50	119.00	270.50	143.00	93.00
............................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	625.50	28.50	63.00	218.00	128.50	187.50
............................TGGCAAGATGTCGGCATAGCC.........................................................................	21	2	299.50	0.50	1.50	3.00	1.00	293.50
............................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	2	291.00	28.50	25.50	152.00	49.50	35.50
............................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	227.50	1.50	1.50	180.50	1.50	42.50
..........................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	413.00	310.00	24.00	29.00	49.00	1.00
............................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	183.50	46.50	8.00	7.00	88.50	33.50
............................TGGCAAGATGTCGGCATAG...........................................................................	19	2	148.00	1.50	29.50	51.00	38.50	27.50
............................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	228.00	1.00	19.00	50.00	26.00	132.00
............................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	76.00	0.00	0.50	67.00	1.00	7.50
............................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	125.00	5.00	8.00	62.00	7.00	43.00
............................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	56.50	33.50	4.50	1.00	17.50	0.00
............................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	56.50	16.50	9.50	0.00	28.50	2.00
............................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	54.50	27.00	6.00	4.50	17.00	0.00
............................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	52.50	17.50	2.50	21.50	9.00	2.00
............................TGGCAAGATGTCGGCATAGCTTA.......................................................................	23	2	52.50	16.00	21.50	4.50	10.50	0.00
............................TGGCAAGATGTCGGCATAGCG.........................................................................	21	2	51.50	0.00	0.50	0.00	2.00	49.00
............................TGGCAAGATGTCGGCATAGCTTT.......................................................................	23	1	102.00	1.00	28.00	32.00	38.00	3.00
............................TGGCAAGATGTCGGAATAGCTGT.......................................................................	23	2	51.00	1.50	2.00	44.50	2.50	0.50
............................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	47.00	1.00	1.00	14.00	0.50	30.50
...........................CTGGCAAGATGTCGGCATAGCTGA.......................................................................	24	2	46.00	17.00	2.50	20.00	6.00	0.50
............................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	43.50	13.00	2.00	13.50	8.50	6.50
............................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	42.50	14.50	3.50	14.50	6.50	3.50
............................TGGCAAGATGTCGGCATAGCTGAC......................................................................	24	1	79.00	16.00	8.00	27.00	14.00	14.00
............................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	36.00	3.50	0.50	11.00	0.50	20.50
................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	35.50	5.00	2.00	22.00	1.00	5.50
............................TGGCAAGATGTCGGAATAGCTGAT......................................................................	24	2	35.00	0.50	0.00	31.50	0.00	3.00
............................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	34.50	13.50	5.00	10.50	4.50	1.00
............................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	34.00	0.50	1.00	7.00	2.50	23.00
............................TGGCAAGATGTCGGCACAGCTGA.......................................................................	23	2	33.50	12.50	2.00	11.50	4.00	3.50
............................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	32.50	10.00	2.00	15.00	2.50	3.00
............................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	32.50	4.00	2.50	16.00	5.50	4.50
............................TGGCAAGCTGTCGGCATAGCTGA.......................................................................	23	2	32.00	7.50	0.50	20.50	3.50	0.00
............................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	32.00	14.50	2.50	12.00	1.00	2.00
.............................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	31.50	7.50	0.50	12.50	2.00	9.00
............................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	31.50	16.00	2.50	10.50	1.50	1.00
............................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	31.00	0.50	1.50	13.50	0.00	15.50
............................TGGCAAGATGTCTGCATAGCTGA.......................................................................	23	2	30.00	11.00	8.50	4.50	5.00	1.00
............................TGGCAAGATGTCGGAATAGCC.........................................................................	21	2	29.00	0.00	0.00	0.50	0.00	28.50
..............................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	29.00	3.00	0.00	19.50	0.50	6.00
............................TGTCAAGATGTCGGCATAGCT.........................................................................	21	2	28.00	0.00	0.50	2.00	1.00	24.50
............................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	28.00	4.50	4.00	10.00	5.50	4.00
............................TGGCAAGATGTCGGCATAGCGG........................................................................	22	2	27.50	0.50	2.00	0.50	3.50	21.00
............................TGGCAAGATGGCGGCATAGCTG........................................................................	22	2	26.50	1.00	5.00	0.50	18.00	2.00
............................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	25.50	0.00	6.50	8.00	5.50	5.50
............................TGGCAGGATGTCGGCATAGCTGA.......................................................................	23	2	24.50	10.50	2.00	4.00	4.00	4.00
............................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	49.00	2.00	1.00	17.00	3.00	26.00
.............................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	24.00	0.00	0.00	8.00	0.00	16.00
............................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	24.00	6.00	2.50	5.50	2.50	7.50
............................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	23.50	10.50	1.50	8.00	2.00	1.50
............................TGGCAAGATGTCGACATAGCTGA.......................................................................	23	2	23.50	4.00	2.50	7.50	7.00	2.50
............................TGGCAAGATGTCGGCGTAGCTGA.......................................................................	23	2	22.00	12.00	1.00	6.00	3.00	0.00
............................TTGCAAGATGTCGGCATAGCT.........................................................................	21	2	22.00	0.00	0.00	4.00	0.50	17.50
............................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	22.00	9.50	5.00	4.50	0.50	2.50
............................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	22.00	10.50	2.00	5.50	1.00	3.00
............................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	22.00	13.50	2.00	1.50	4.00	1.00
............................TGGCAAGATGTCGGCATAGATGA.......................................................................	23	2	21.00	15.00	0.50	2.00	1.50	2.00
............................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	20.50	0.50	2.50	8.50	3.50	5.50
............................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	19.00	5.00	2.00	3.00	1.50	7.50
............................TGGCAAGATGGCGGCATAGCT.........................................................................	21	2	19.00	0.00	5.00	0.00	13.50	0.50
...........................CTGGCAAGATGTCGGCATAGCTG........................................................................	23	2	18.00	1.50	3.00	6.00	5.50	2.00
...........................TTGGCAAGATGTCGGAATAGCT.........................................................................	22	2	18.00	1.00	0.00	8.00	0.00	9.00
............................TGGCAAGATGTCGGCATATCTG........................................................................	22	2	17.50	1.00	6.00	1.00	7.00	2.50
............................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	17.50	2.00	0.00	8.00	3.50	4.00
............................TGGCAAGATGTCGGCATAACTGA.......................................................................	23	2	17.50	8.00	1.50	3.00	0.00	5.00
............................TGGCAAGATATCGGCATAGCTGA.......................................................................	23	2	17.00	5.50	2.00	4.00	2.00	3.50
............................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	16.50	1.00	1.50	11.00	2.00	1.00
............................TGGCAAGATGTCGGTATAGCTGA.......................................................................	23	2	16.50	6.50	1.00	5.00	1.50	2.50
............................TGGCAAGATGTCGGCATAGCTCA.......................................................................	23	2	16.50	3.50	1.00	5.00	6.00	1.00
............................TGGCAAGACGTCGGCATAGCTGA.......................................................................	23	2	16.50	6.00	1.00	7.00	2.00	0.50
............................TGGCAAGATGTCGGAATAGCTGAA......................................................................	24	2	16.50	1.50	1.50	10.50	0.50	2.50
............................GGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	16.00	6.50	1.50	6.00	2.00	0.00
............................TGGCAAGATGTCGGAATAG...........................................................................	19	2	15.50	0.00	0.00	15.50	0.00	0.00
............................TGGCAAGATGCCGGCATAGCTG........................................................................	22	2	15.00	1.50	1.00	4.50	4.00	4.00
...............................CAAGATGTCGGCATAGCTGA.......................................................................	20	2	15.00	1.50	0.00	4.50	0.00	9.00
............................TGGCAAGATGTCCGCATAGCTGA.......................................................................	23	2	15.00	6.50	0.00	7.00	0.50	1.00
............................AGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	15.00	5.50	0.50	6.00	2.50	0.50
............................TGGCCAGATGTCGGCATAGCTGA.......................................................................	23	2	15.00	7.00	2.00	3.00	3.00	0.00
............................TGGCAAGATGTCGGCATAGCTAA.......................................................................	23	2	15.00	8.50	2.50	3.50	0.50	0.00
............................TGGAAAGATGTCGGCATAGCTGA.......................................................................	23	2	14.50	6.00	1.00	5.00	2.00	0.50
............................TGGCAAGATCTCGGCATAGCTGA.......................................................................	23	2	14.00	3.50	0.00	8.00	2.00	0.50
............................TGGCAAGATGTCTGCATAGCTG........................................................................	22	2	14.00	0.50	3.00	1.50	3.50	5.50
............................TGCCAAGATGTCGGCATAGCT.........................................................................	21	2	14.00	0.00	0.50	1.00	0.00	12.50
............................CGGCAAGATGTCGGCATAGCTG........................................................................	22	2	13.50	1.00	0.50	4.00	3.00	5.00
............................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	13.50	5.00	0.50	4.50	1.00	2.50
............................TGGCAAGATGTCGGCATCGCTG........................................................................	22	2	13.00	2.00	2.50	0.00	8.00	0.50
............................TGGCAAGATGTCTGCATAGCT.........................................................................	21	2	13.00	0.00	3.50	0.50	8.00	1.00
............................TGGCAAGATTTCGGCATAGCTG........................................................................	22	2	13.00	0.00	1.50	3.00	0.00	8.50
............................TGGCAAGATGTCGGCATAGCTGTA......................................................................	24	1	25.00	1.00	3.00	3.00	2.00	16.00
............................TGGCAAGATGTCGGCATAGCCG........................................................................	22	2	12.50	1.50	1.50	3.50	3.50	2.50
............................TGGCAAGATGTCGGCAGAGCTGA.......................................................................	23	2	12.50	8.50	0.00	1.00	3.00	0.00
............................TGGCAAGGTGTCGGCATAGCTG........................................................................	22	2	12.50	1.50	1.00	2.50	4.50	3.00

droEre2 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_4845:7899182-7899303 -

95.14

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC CGATCGTATAGCACCTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGCTTTTAAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	19988.00	3732.00	1156.50	0.00	15099.50
............................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	5846.00	261.00	1124.00	0.00	4461.00
............................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	2294.00	27.00	626.50	0.00	1640.50
............................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	546.00	14.50	55.00	0.00	476.50
............................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	528.50	13.50	33.50	0.00	481.50
..........................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	667.00	211.00	75.00	0.00	381.00
............................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	330.50	4.00	63.00	0.00	263.50
............................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	315.50	66.00	27.50	0.00	222.00
............................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	2	259.50	10.50	26.00	0.00	223.00
............................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	233.50	22.00	28.00	0.00	183.50
............................TGGCAAGATGTCGGCATAGCTTA.......................................................................	23	2	231.00	105.50	4.00	0.00	121.50
............................TGGCAAGATGTCTGCATAGCTGA.......................................................................	23	2	221.00	28.50	1.50	0.00	191.00
............................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	173.00	16.50	31.50	0.00	125.00
............................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	164.00	9.50	0.00	0.00	154.50
............................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	149.50	4.00	15.50	0.00	130.00
............................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	141.00	17.50	1.50	0.00	122.00
............................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	140.50	6.50	52.00	0.00	82.00
............................TGGAAAGATGTCGGCATAGCTGA.......................................................................	23	2	125.00	4.00	0.00	0.00	121.00
............................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	118.00	23.50	2.00	0.00	92.50
............................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	116.50	10.00	1.00	0.00	105.50
............................TGGCAAGATGTCGGCATAG...........................................................................	19	2	96.00	2.00	19.50	0.00	74.50
............................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	92.00	17.00	3.00	0.00	72.00
............................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	91.50	2.00	0.50	0.00	89.00
............................TGGCAATATGTCGGCATAGCTGA.......................................................................	23	2	76.50	11.50	0.00	0.00	65.00
............................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	76.50	11.50	1.00	0.00	64.00
............................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	143.00	1.00	12.00	0.00	130.00
............................TGGCAAGATGTCGGCATAGATGA.......................................................................	23	2	57.00	3.50	1.00	0.00	52.50
............................TGGCAAGATGTCTGCATAGCTG........................................................................	22	2	56.50	2.00	1.50	0.00	53.00
............................TTGCAAGATGTCGGCATAGCTG........................................................................	22	2	56.50	0.50	1.00	0.00	55.00
............................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	85.00	0.00	3.00	0.00	82.00
............................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	40.50	6.00	1.00	0.00	33.50
............................TGGCAAGATGTCGGCATATCTG........................................................................	22	2	39.50	2.50	5.50	0.00	31.50
............................TGGCAAGATGTCGGCATAGCTGAC......................................................................	24	1	79.00	12.00	5.00	0.00	62.00
............................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	37.00	5.50	2.50	0.00	29.00
............................TGGCAAGATGTAGGCATAGCTG........................................................................	22	2	36.00	1.00	0.00	0.00	35.00
............................TGTCAAGATGTCGGCATAGCTG........................................................................	22	2	34.00	1.00	0.50	0.00	32.50
...........................CTGGCAAGATGTCGGCATAGCTGA.......................................................................	24	2	33.00	4.50	1.50	0.00	27.00
............................TGGAAAGATGTCGGCATAGCTG........................................................................	22	2	32.50	0.00	0.00	0.00	32.50
............................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	32.50	6.50	3.00	0.00	23.00
............................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	31.00	12.50	4.00	0.00	14.50
............................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	31.00	12.00	2.00	0.00	17.00
............................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	28.50	1.50	0.50	0.00	26.50
............................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	28.50	11.00	6.50	0.00	11.00
............................TGGCAAGATGTCGTCATAGCTG........................................................................	22	2	27.50	2.00	1.50	0.00	24.00
............................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	26.00	7.00	2.00	0.00	17.00
.............................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	25.50	4.50	1.50	0.00	19.50
............................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	25.50	3.00	0.00	0.00	22.50
............................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	25.00	4.50	1.50	0.00	19.00
............................TTGCAAGATGTCGGCATAGCT.........................................................................	21	2	25.00	0.50	0.50	0.00	24.00
............................TGGCAAGATGTCGGCATAGCTCA.......................................................................	23	2	24.50	14.00	1.50	0.00	9.00
............................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	24.50	7.00	1.00	0.00	16.50
............................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	24.50	5.50	1.50	0.00	17.50
............................TGGCAAGATGTCGGCACAGCTGA.......................................................................	23	2	24.00	8.00	1.50	0.00	14.50
............................TGGGAAGATGTCGGCATAGCTGA.......................................................................	23	2	24.00	2.50	1.50	0.00	20.00
............................TGGTAAGATGTCGGCATAGCTGA.......................................................................	23	2	23.50	4.00	2.50	0.00	17.00
................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	23.50	6.50	0.50	0.00	16.50
............................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	45.00	1.00	1.00	0.00	43.00
............................TGGCAAGATTTCGGCATAGCTG........................................................................	22	2	22.00	1.50	1.00	0.00	19.50
............................TGGCAAGATCTCGGCATAGCTGA.......................................................................	23	2	20.50	10.50	0.00	0.00	10.00
............................TGGCAAGATGTCCGCATAGCTGA.......................................................................	23	2	20.00	10.50	0.50	0.00	9.00
............................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	20.00	1.00	2.50	0.00	16.50
............................TGGCAAGATGTCGGCATAACTGA.......................................................................	23	2	19.50	12.50	1.00	0.00	6.00
............................TGGCAAGATGTCTGCATAGCT.........................................................................	21	2	19.50	0.00	1.00	0.00	18.50
............................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	19.00	4.50	2.50	0.00	12.00
............................TGGCAGGATGTCGGCATAGCTGA.......................................................................	23	2	19.00	6.00	2.50	0.00	10.50
............................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	18.50	10.00	1.50	0.00	7.00
............................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	17.00	0.50	3.50	0.00	13.00
............................TGGCAAGATGTCGGCATAGCTGACT.....................................................................	25	1	34.00	2.00	1.00	0.00	31.00
............................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	17.00	8.00	0.00	0.00	9.00
.............................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	16.50	1.00	0.00	0.00	15.50
............................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	16.50	2.50	0.00	0.00	14.00
............................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	16.00	0.00	5.50	0.00	10.50
............................TGGCAAGATGTCGGCATAGCTGACG.....................................................................	25	1	32.00	6.00	2.00	0.00	24.00
............................TGGCAAGATGTCGGCATAGATG........................................................................	22	2	16.00	0.00	1.00	0.00	15.00
............................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	16.00	4.00	1.00	0.00	11.00
................................AAGATGTCGGCATAGCTG........................................................................	18	2	14.50	0.50	0.00	0.00	14.00
...........................CTGGCAAGATGTCGGCATAGCTG........................................................................	23	2	14.50	1.00	1.50	0.00	12.00
............................TGGCAATATGTCGGCATAGCTG........................................................................	22	2	14.50	0.00	0.00	0.00	14.50
............................TGGCAAGATATCGGCATAGCTGA.......................................................................	23	2	14.50	4.50	0.50	0.00	9.50
............................TGGAAAGATGTCGGCATAGCT.........................................................................	21	2	14.50	0.00	0.00	0.00	14.50
............................TGGCAAGATGTCGGCGTAGCTGA.......................................................................	23	2	14.00	6.50	0.00	0.00	7.50
............................TGGCAAGATGTCGTCATAGCT.........................................................................	21	2	14.00	0.00	0.50	0.00	13.50
............................TGGCAAGATGTCGGTATAGCTGA.......................................................................	23	2	13.50	3.50	1.00	0.00	9.00
............................TGACAAGATGTCGGCATAGCTG........................................................................	22	2	13.50	0.50	0.50	0.00	12.50
............................TGGCAAGATGTCGGCATAGCTAA.......................................................................	23	2	13.50	3.50	1.00	0.00	9.00
............................TGGCAAGATGTCGGCATAGCTTT.......................................................................	23	1	27.00	1.00	9.00	0.00	17.00
............................TGGCAAGATGTCGACATAGCTGA.......................................................................	23	2	13.50	3.50	0.50	0.00	9.50
............................TGGCAAGATGTCGGCATATCT.........................................................................	21	2	13.00	0.00	1.50	0.00	11.50
............................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	13.00	7.50	1.00	0.00	4.50
............................TGGCAAGATGGCGGCATAGCTG........................................................................	22	2	12.50	1.00	6.00	0.00	5.50
............................TGGCCAGATGTCGGCATAGCTGA.......................................................................	23	2	12.50	3.00	1.00	0.00	8.50
..........................................................................CGCTATGCTGCATCTAGTCAG...........................	21	1	24.00	4.00	1.00	0.00	19.00
............................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	12.00	0.00	1.00	0.00	11.00
............................TGGCAAGATGTCAGCATAGCTG........................................................................	22	2	11.50	1.50	2.50	0.00	7.50
............................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	11.50	3.00	3.00	0.00	5.50
............................TGGCAAGACGTCGGCATAGCTGA.......................................................................	23	2	11.00	1.00	1.50	0.00	8.50
............................TGTCAAGATGTCGGCATAGCT.........................................................................	21	2	10.50	0.00	0.00	0.00	10.50
..............................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	10.50	1.50	0.00	0.00	9.00
............................TGGCAAGATGTCTGCATAGCTGAT......................................................................	24	1	20.00	0.00	0.00	0.00	20.00
............................TGGCAAGATGTAGGCATAGCT.........................................................................	21	2	10.00	0.00	0.00	0.00	10.00
............................CGGCAAGATGTCGGCATAGCTG........................................................................	22	2	9.50	0.50	1.50	0.00	7.50

droFic1 - 5 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000453948:1777290-1777409 +

92.62

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CGATCGT--ATCGAATCTGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTAAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAACATGATC

Size

Hit Count

Total Norm

scf7180000453945:232639-232759 +

45.77

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--------GAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CGAGTAAATCTAGACATCGTTTTTAGGCGATAACGCTTTAGCAATAAATAATGTTT---------TTTACAAAGTTAATACCCGCATTTATTATGTTAATCATCGTTTGAAAATTGCATTAAATAATATC

Size

Hit Count

Total Norm

scf7180000453216:20778-20812 -

16.55

Size

Hit Count

Total Norm

scf7180000453925:902649-902683 +

16.55

Size

Hit Count

Total Norm

scf7180000453945:232728-232755 -

13.33

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCA-GCGAGATC
TTATT-----------------------------------------------------------------------------------------------TAATGCAATTTTCAAACGATGAT

Size

Hit Count

Total Norm

None

droEug1 - 10 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000409672:1435483-1435608 +

86.92

CGATCGTATATC----AACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CGATCGTATACCCCAAAAATCTATTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTAAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAACAAGATC

Size

Hit Count

Total Norm

scf7180000409767:1058049-1058169 -

51.19

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAG-AGCGCTATGCTGCATCT-AGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CTCTCTCATATTCGCATCGAAC-GAACTTGACCATCTGGCGA-ATAGATGGAA-CAAAGCGTACTTTCGAACAACCGTTAGAGTGCAGAGACGTGAATTGTCACTTGGCACATTCTTTTACACT

Size

Hit Count

Total Norm

scf7180000405943:2283-2403 -

51.19

Size

Hit Count

Total Norm

scf7180000409752:1140339-1140459 +

51.19

Size

Hit Count

Total Norm

scf7180000405943:5172-5292 -

51.19

Size

Hit Count

Total Norm

scf7180000405943:5217-5274 +

24.52

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTC---AGTTGTTCAATGGAACAGTCAGCGAGATC
--------------------------------------------------------AACGGTTGTTCGAAAGTACGCTTTGTTCCATCTATTCGCCAGATGGTCA-----------AGTTCGTTC

Size

Hit Count

Total Norm

scf7180000405943:2328-2385 +

24.52

Size

Hit Count

Total Norm

scf7180000409767:1058094-1058151 +

24.52

Size

Hit Count

Total Norm

scf7180000409752:1140357-1140414 -

24.52

Size

Hit Count

Total Norm

scf7180000409672:4949752-4949798 +

18.91

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
TGTTCAAGA----ACTATGCTCTCCAACTGGTA-----------------------------------------------------------------------GAGAAAAATTGGGAGCTG

Size

Hit Count

Total Norm

droBia1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000301754:2904277-2904401 +

87.55

CGATCGTATATCAAC---TCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CGGTCGTATAGCCACGCTTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGAATTTTAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAACAAGATC

Size

Hit Count

Total Norm

droTak1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000415313:18623-18747 +

85.25

CGATCGTATATCAAC---TCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CGATCGTATAGCCCCGCATCTGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGAACTTTAGGAACGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCATCAAGATC

Size

Hit Count

Total Norm

droEle1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000491214:575197-575322 +

84.66

CGATCGTATA----TCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
TGATCGTTAAAGCCTCACATCTGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTAGAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAACAAGATC

Size

Hit Count

Total Norm

droRho1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000777956:117304-117428 +

86.02

CGATCGT---ATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CGATCGTTTTAGCCCAAATCAGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTAAAGAGCGCTATGCTGCATCTAGTCAGTTGCTCAATTGAATAGTCATCGAGATC

Size

Hit Count

Total Norm

droKik1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000302385:435222-435348 -

84.07

CGATCGTATATCA---ACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCG-ATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAAT-GGAACAGTCAGCGAGATC
CGATCATGGATCATGGATTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAGCGAATTTTGTAGAGCGCTATGCTGCATCTAGTCAGTTATTCAACAGGAACAGTCAACGAGATC

Size

Hit Count

Total Norm

droAna3 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_13266:10515593-10515725 +

73.94

CGATCGTATATC---AACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC-------- CGATCATATAGCCAAGAATCTGTTGTTAAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGAATTTTGAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAACAAGATCGAAACTCT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................TGGCAAGATGTCGGCATAGCTGA...............................................................................	23	2	41131.50	27187.00	10159.00	3345.50	440.00
...............................TGGCAAGATGTCGGCATAGCTG................................................................................	22	2	7106.50	4575.50	1159.50	1337.00	34.50
...............................TGGCAAGATGTCGGCATAGCT.................................................................................	21	2	5193.50	3801.00	549.00	838.50	5.00
...............................TGGCAAGATGTCGGCATAGCTGAT..............................................................................	24	2	2512.00	1765.50	576.00	167.50	3.00
...............................TGGCAAGATGTCGGCATAGCTT................................................................................	22	2	1427.00	983.50	238.00	204.50	1.00
...............................TGGCAAGATGTCGGCATAGCTGT...............................................................................	23	2	1313.50	840.50	299.50	171.00	2.50
...............................TGGCAAGATGTCGGAATAGCTGA...............................................................................	23	2	696.50	545.50	76.50	54.50	20.00
...............................TGGCAAGATGTCGGAATAGCT.................................................................................	21	2	582.00	535.00	16.50	29.50	1.00
...............................TGGCAAGATGTCGGCATAGC..................................................................................	20	2	447.00	326.00	56.50	63.50	1.00
...............................TGGCAAGATGTCGGCATAGCTGAA..............................................................................	24	2	380.00	222.00	87.50	69.00	1.50
...............................TGGCAAGATGTCGGCATAGCTGATT.............................................................................	25	1	723.00	515.00	179.00	28.00	1.00
...............................TGGCAAGATGTCGGCATAGCAGA...............................................................................	23	2	336.00	272.50	62.50	1.00	0.00
...............................TGGCAAGATGTCGGCATATCTGA...............................................................................	23	2	330.00	197.00	121.50	8.50	3.00
...............................TGGCAAGATGTCGGAATAGCTG................................................................................	22	2	322.00	272.00	12.00	36.00	2.00
...............................TGTCAAGATGTCGGCATAGCTGA...............................................................................	23	2	259.00	84.50	173.00	1.00	0.50
...............................TGGCAAGATGTCGGCATAGATGA...............................................................................	23	2	238.00	143.50	85.50	8.00	1.00
...............................TGGCAAGATGTAGGCATAGCTGA...............................................................................	23	2	234.50	202.00	28.00	4.00	0.50
...............................TGGAAAGATGTCGGCATAGCTGA...............................................................................	23	2	233.50	148.00	80.50	5.00	0.00
...............................TGGCAAGATGTCGGCATAGCTGTT..............................................................................	24	1	454.00	275.00	125.00	54.00	0.00
...............................TGGCAAGATGTCAGCATAGCTGA...............................................................................	23	2	201.50	177.00	18.50	6.00	0.00
...............................TGGCAAGATGTCGGCATAG...................................................................................	19	2	177.00	131.00	21.50	24.50	0.00
...............................TGGCAAGATGTCGTCATAGCTGA...............................................................................	23	2	172.50	113.50	53.00	4.50	1.50
...............................TGGCAAGATGTCGGCATAGCCGA...............................................................................	23	2	167.50	130.50	30.50	5.50	1.00
...............................TGGCAAGATGTCGGCATAGCTTT...............................................................................	23	1	287.00	207.00	36.00	42.00	2.00
...............................TGGCAAGATGTCGGAATAGC..................................................................................	20	2	136.50	128.00	2.50	5.50	0.50
...............................TGGCAAGATGTCTGCATAGCTGA...............................................................................	23	2	132.50	94.00	31.50	5.00	2.00
...............................TGGCAAGATGTCGGCATAGCGGA...............................................................................	23	2	121.50	106.00	6.00	9.00	0.50
...............................TTGCAAGATGTCGGCATAGCTGA...............................................................................	23	2	109.00	83.00	22.50	3.00	0.50
.............................................................................CGCTATGCTGCATCTAGTCAGT..................................	22	1	217.00	34.00	83.00	73.00	27.00
...............................TGGCAAGATGACGGCATAGCTGA...............................................................................	23	2	108.00	88.50	1.00	18.50	0.00
...............................TGGCAAGATGTTGGCATAGCTGA...............................................................................	23	2	106.50	90.00	12.50	3.50	0.50
...............................TGGCAAGATGTCGGCATAGCTGAC..............................................................................	24	1	212.00	71.00	109.00	32.00	0.00
...............................TGGCAAGATGTCGGCATAGCTTA...............................................................................	23	2	105.00	54.00	30.00	7.00	14.00
...............................TGGCAAGATGTCCGCATAGCTGA...............................................................................	23	2	100.50	89.50	4.00	5.50	1.50
...............................TGGCAAGATGTCGGCATAGCTGAAT.............................................................................	25	1	193.00	141.00	46.00	6.00	0.00
...............................TAGCAAGATGTCGGCATAGCTGA...............................................................................	23	2	90.00	71.50	11.50	5.50	1.50
...............................TGGCAAGATGCCGGCATAGCTGA...............................................................................	23	2	86.50	52.00	11.00	23.00	0.50
...............................TGGCAAGATGGCGGCATAGCTGA...............................................................................	23	2	85.00	38.00	1.50	43.50	2.00
...............................TGGCAAGATGTCGGCATAGCTGC...............................................................................	23	2	81.00	12.00	3.50	59.00	6.50
...............................TGGCAAGATGTCGGCCTAGCTGA...............................................................................	23	2	76.50	63.00	3.50	7.50	2.50
...............................TGGCAAGATGTCGGCGTAGCTGA...............................................................................	23	2	72.00	60.50	5.00	5.50	1.00
...............................TGGCAAGATGTCGACATAGCTGA...............................................................................	23	2	67.50	53.50	9.00	4.50	0.50
...............................TGGCAAGATGTCGGCATAGCAG................................................................................	22	2	64.00	55.00	8.50	0.50	0.00
...............................TGGCAAGATGTCGGAATAGCTT................................................................................	22	2	63.50	57.00	3.00	3.50	0.00
...............................TGGCAAGATGTGGGCATAGCTGA...............................................................................	23	2	63.50	62.50	0.00	1.00	0.00
...............................TGGCAAGATGTCGGCATAGCA.................................................................................	21	2	59.00	47.50	8.00	3.50	0.00
...............................CGGCAAGATGTCGGCATAGCTGA...............................................................................	23	2	58.00	31.00	18.50	8.50	0.00
...............................TCGCAAGATGTCGGCATAGCTGA...............................................................................	23	2	56.00	49.50	4.00	2.50	0.00
................................TGCAAGATGTCGGCATAGCTGA...............................................................................	22	2	54.50	34.00	20.00	0.50	0.00
...............................TGGCAAGATGTCGGCATAGCTGG...............................................................................	23	2	53.00	17.50	15.00	17.00	3.50
...............................TGGCAAGATGTCGGCATATCTG................................................................................	22	2	52.50	33.00	14.00	4.50	1.00
...............................TGGCAAGATGTCGGCATAGCTGATTT............................................................................	26	1	102.00	51.00	43.00	8.00	0.00
...............................TGGCAATATGTCGGCATAGCTGA...............................................................................	23	2	50.00	26.00	20.00	2.50	1.50
...............................TGGCGAGATGTCGGCATAGCTGA...............................................................................	23	2	47.50	23.00	19.00	5.00	0.50
...............................TGGCAAGATGTCGGCATATCT.................................................................................	21	2	45.00	35.00	9.00	1.00	0.00
.................................GCAAGATGTCGGCATAGCTGA...............................................................................	21	2	44.00	29.50	12.50	1.00	1.00
...............................TGGCAAGATGTCGCCATAGCTGA...............................................................................	23	2	42.50	32.50	5.50	3.50	1.00
................................GGCAAGATGTCGGCATAGCTGA...............................................................................	22	2	42.00	25.50	14.50	2.00	0.00
...............................TGGCAAGATGTCGGCTTAGCTGA...............................................................................	23	2	41.50	38.00	1.50	2.00	0.00
...............................TGGCAAGGTGTCGGCATAGCTGA...............................................................................	23	2	41.50	20.00	17.50	4.00	0.00
...............................TGGCAAGATTTCGGCATAGCTGA...............................................................................	23	2	41.50	23.50	15.00	0.50	2.50
...............................TGACAAGATGTCGGCATAGCTGA...............................................................................	23	2	40.50	18.50	15.00	6.00	1.00
...............................TGGCAAGATGTCGGCATAGCTA................................................................................	22	2	40.50	31.50	4.00	5.00	0.00
...............................GGGCAAGATGTCGGCATAGCTGA...............................................................................	23	2	40.00	24.00	2.50	12.00	1.50
...............................TGGCAAGATGTCGGCATAGCTGAAA.............................................................................	25	2	39.00	23.50	9.50	5.50	0.50
...............................TGGCAAGATGTCGGAATAGCTGAT..............................................................................	24	2	38.50	32.50	3.00	3.00	0.00
...............................TGGCAAGATGTAGGCATAGCTG................................................................................	22	2	37.50	31.00	2.00	4.50	0.00
...............................TGGCAAAATGTCGGCATAGCTGA...............................................................................	23	2	37.00	33.50	2.50	0.50	0.50
...............................TGGCAAGATGTCGGCATAGATG................................................................................	22	2	37.00	24.00	10.50	2.00	0.50
...............................TGGTAAGATGTCGGCATAGCTGA...............................................................................	23	2	36.00	22.00	10.50	3.00	0.50
...............................TGGCAAGATGTCGGAATAGCTGT...............................................................................	23	2	35.00	28.50	0.00	6.50	0.00
...............................AGGCAAGATGTCGGCATAGCTGA...............................................................................	23	2	34.50	17.00	4.00	13.00	0.50
...............................TGGAAAGATGTCGGCATAGCTG................................................................................	22	2	34.50	24.50	8.50	1.50	0.00
...............................TGGCAAGATCTCGGCATAGCTGA...............................................................................	23	2	34.50	19.50	6.50	5.50	3.00
...................................AAGATGTCGGCATAGCTGA...............................................................................	19	2	34.00	17.00	15.50	0.50	1.00
...............................TGGCAAGATGTCAGCATAGCTG................................................................................	22	2	34.00	29.50	1.50	3.00	0.00
...............................TGGCAAGATGACGGCATAGCTG................................................................................	22	2	33.50	24.00	0.50	9.00	0.00
...............................TGGCAAGATGTCGGCATAGCG.................................................................................	21	2	33.00	30.00	1.50	1.50	0.00
...............................TGGCAAGATGTCGGCACAGCTGA...............................................................................	23	2	31.50	16.50	8.00	7.00	0.00
...............................TGCCAAGATGTCGGCATAGCTGA...............................................................................	23	2	31.00	19.50	9.50	2.00	0.00
...............................TGGCAAGACGTCGGCATAGCTGA...............................................................................	23	2	30.50	20.50	6.00	3.50	0.50
...............................TGGCAGGATGTCGGCATAGCTGA...............................................................................	23	2	30.00	9.00	12.00	8.50	0.50
...............................TGTCAAGATGTCGGCATAGCTG................................................................................	22	2	30.00	12.00	17.50	0.50	0.00
...............................TGGCAAGATGTAGGCATAGCT.................................................................................	21	2	30.00	28.00	1.50	0.50	0.00
...............................TGGCAAGATGTCGGCATAGCCG................................................................................	22	2	30.00	22.00	2.00	5.00	1.00
...............................TGGCAAGATGTCGGCATAGCAT................................................................................	22	1	58.00	49.00	7.00	2.00	0.00
...............................TGGCAAGATGTCGGCATACCTGA...............................................................................	23	2	29.00	10.00	5.00	12.50	1.50
...............................TGGCAAGATGTCTGCATAGCTG................................................................................	22	2	28.50	21.50	5.00	2.00	0.00
...............................TGGAAAGATGTCGGCATAGCT.................................................................................	21	2	26.50	17.00	4.50	5.00	0.00
...............................TGGCAAGATGTCGTCATAGCT.................................................................................	21	2	26.50	24.50	2.00	0.00	0.00
...............................TGGCAAGATGTCGGCATCGCTGA...............................................................................	23	2	26.50	14.00	1.00	10.00	1.50
...............................TGGCAACATGTCGGCATAGCTGA...............................................................................	23	2	26.50	20.00	4.50	2.00	0.00
..............................CTGGCAAGATGTCGGCATAGCTGA...............................................................................	24	2	26.50	10.50	8.50	6.00	1.50
...............................TGGAAAGATGTCGGCATAGATGA...............................................................................	23	1	53.00	30.00	23.00	0.00	0.00
...............................TGGCAAGATGTCGTCATAGCTG................................................................................	22	2	26.00	18.00	5.00	2.50	0.50
...............................TGGCAAGATGTCGGTATAGCTGA...............................................................................	23	2	26.00	15.50	7.00	3.00	0.50
...............................TGGCAAGATGTCGGCATAGCTCA...............................................................................	23	2	25.50	10.00	2.00	11.50	2.00
...............................TGGCAAGATGTCGGCATAGAT.................................................................................	21	2	25.00	20.00	3.50	1.50	0.00
...............................TGGCAAGATGTCGGCATAGCTGACG.............................................................................	25	1	49.00	31.00	14.00	4.00	0.00
...............................TGGCAAGATGTCGGCATAGCTGAG..............................................................................	24	2	24.00	19.00	2.00	3.00	0.00
...............................TGGCAAGATGTCCGCATAGCTG................................................................................	22	2	24.00	22.50	0.00	1.50	0.00

droBip1 - 7 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scf7180000396428:937261-937384 +

87.48

CGATCGTATATCA---ACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CGATCATATAGCACAGAATCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGAATTTGA-GAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAACAAGATC

Size

Hit Count

Total Norm

scf7180000393397:12416-12531 -

44.85

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTG-TTCAATGGAACAGTCAGCGAGATC
ATTTTGTGGCTCAAAATTTGAAAATAAAATGTGGGGTTTCGACATC-------TAGAAAATTTACTCCAATGATTTGGATGCAGCAGCACAAAAACAATTATATTGGATTTGATAAAGAAGAA

Size

Hit Count

Total Norm

scf7180000393397:12971-13092 -

42.47

CGATCGTATATCAACTCCGTTGGTAAATTGG-CAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGC------------------------ATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CCAAAATA-AGGAAGACGGTAGCGATATAGATCAAACTGATGACACTGCAAACGAAGAACCGG---------------AATGCCACACTCTTATAGAAGGGTTTTTAGCCATTAAGCTGGCTG---------GCTTTTAGCCATTTT

Size

Hit Count

Total Norm

scf7180000393963:1245-1384 +

37.35

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATG----------------TCGGC-ATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTA-TGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
AGATTAAATCCCGCCTGAAAAGATACATTTGTAAGTTGAGGCGAATGGGACTTATATGCCTTACTTACCTTCTTGAAGCAGTTCTGAATAGTTGTAGTTTTAACTTTCGCCCATCCTTGACTTATGAAGTGAACAACATC

Size

Hit Count

Total Norm

scf7180000393259:1011-1110 -

35.52

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CAAGCTGATGACGACGCAG-----------ACAAAGAACCGGAATGCCACACTCTTAAAGAAGGGTTTTTA----GCCATTAAGCTGCT-------AAAGCGTCTTTGCATTCAAAAGAAAC

Size

Hit Count

Total Norm

scf7180000393397:13651-13810 +

28.85

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTG----------------------AA---------------------GAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC
CCATACAACATTAAGGAGTTGAATTATGATACATTACAACAACATAATATTCATCGAAAAAACATTAACGGATTGGACTGGATGGAAGGAGAAATACCCTGTAACTGCTTAAGCGATGTACTTTCTCCACTAAACAAGTTTTCCAATATAATTGTTCGTG-----

Size

Hit Count

Total Norm

scf7180000396712:754514-754574 -

27.5

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCA------ATGGAACAGTCAGCGAGATC
TGA-------------------------------------------------------------------GGAGCATTTTGCAACTGAAATTGAGTTGTGAATGTCGTATAAATCAGACCGAGATAGC

Size

Hit Count

Total Norm

dp4 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

chr3:16483204-16483318 -

80.91

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC CG------TACCGCATCTGTTGGTAAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTTTGAGAACGCTATGCTGCATCTAGTCAGTTATTCAATGGAACAGTCAAC-AGATC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	27594.50	15098.00	9673.00	2377.00	446.50
............................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	6148.00	3677.50	657.00	1550.50	263.00
............................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	3577.00	2432.00	64.50	967.00	113.50
............................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	1257.00	1047.50	6.50	50.50	152.50
............................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	787.50	445.00	227.00	111.50	4.00
............................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	584.00	369.00	78.00	117.50	19.50
..........................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	955.00	62.00	737.00	156.00	0.00
............................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	446.00	356.00	4.00	82.00	4.00
............................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	427.00	267.00	35.50	124.00	0.50
............................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	410.50	281.00	55.50	72.00	2.00
............................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	400.00	173.00	7.00	121.00	99.00
............................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	1	501.00	351.00	71.00	77.00	2.00
............................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	194.00	167.00	1.00	8.00	18.00
............................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	166.50	68.50	63.00	26.00	9.00
............................TGGCAAGATGTCGGCATAG...........................................................................	19	2	133.50	86.50	4.00	40.50	2.50
............................TGGCAAGATGTCGGCATAGCTGAAGTT...................................................................	27	1	255.00	212.00	28.00	9.00	6.00
............................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	205.00	148.00	2.00	47.00	8.00
............................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	83.50	10.50	53.00	3.00	17.00
............................TGGCAAGATGTCGGAATAGCTGT.......................................................................	23	2	69.50	58.50	5.00	6.00	0.00
............................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	55.50	0.00	42.50	13.00	0.00
............................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	52.00	15.00	31.00	5.50	0.50
............................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	48.00	36.00	0.00	11.50	0.50
............................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	46.00	43.00	0.00	1.00	2.00
............................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	46.00	9.00	34.00	3.00	0.00
............................TGGCAAGATGTCGGCATAGCTTA.......................................................................	23	2	43.00	9.50	29.00	4.50	0.00
............................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	43.00	5.00	33.50	4.50	0.00
...........................CTGGCAAGATGTCGGCATAGCTGA.......................................................................	24	2	40.00	21.00	15.00	4.00	0.00
............................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	38.00	15.00	19.50	3.50	0.00
............................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	37.00	16.00	19.50	1.00	0.50
............................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	36.50	16.00	16.50	3.00	1.00
............................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	34.50	14.00	16.50	4.00	0.00
............................TGGCAAGATGTCGGCATAGATGA.......................................................................	23	2	34.00	11.00	20.00	2.50	0.50
.............................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	34.00	21.00	10.00	1.50	1.50
............................TGGCAAGATGTCGGCACAGCTGA.......................................................................	23	2	31.00	12.00	16.50	2.50	0.00
............................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	29.50	10.50	16.50	2.50	0.00
............................TGGCAAGATGTCGGCAGAGCTGA.......................................................................	23	2	28.50	0.00	24.50	4.00	0.00
............................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	28.50	13.50	12.50	2.00	0.50
............................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	28.00	11.50	9.50	7.00	0.00
............................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	55.00	47.00	1.00	6.00	1.00
............................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	27.50	11.00	13.00	2.50	1.00
............................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	25.50	3.00	18.00	4.50	0.00
............................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	25.00	20.50	2.00	2.50	0.00
............................TGGTAAGATGTCGGCATAGCTGA.......................................................................	23	2	25.00	8.50	14.50	2.00	0.00
............................TGGCAGGATGTCGGCATAGCTGA.......................................................................	23	2	24.50	9.00	13.50	1.50	0.50
............................TGGCAAGATGTCGGTATAGCTGA.......................................................................	23	2	24.50	6.00	16.00	2.50	0.00
............................TGGCAAGATGTCGGCATAGCTCA.......................................................................	23	2	22.50	7.00	11.00	4.50	0.00
............................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	22.00	14.50	3.50	3.50	0.50
............................TGGCAAGATGTCGGCGTAGCTGA.......................................................................	23	2	21.50	9.50	10.00	2.00	0.00
............................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	21.00	4.00	17.00	0.00	0.00
............................TGGAAAGATGTCGGCATAGCTGA.......................................................................	23	2	21.00	3.00	16.50	1.50	0.00
............................TGGCAAGATATCGGCATAGCTGA.......................................................................	23	2	20.50	8.50	10.50	1.00	0.50
............................TGGCAAGATGTCGGCATAGCTGAAG.....................................................................	25	1	40.00	25.00	7.00	7.00	1.00
............................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	20.00	5.50	11.50	3.00	0.00
............................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	19.50	11.50	4.50	3.50	0.00
............................TGGCAAGATGTCGGCATAGCTGAAGT....................................................................	26	1	38.00	22.00	15.00	0.00	1.00
............................TGGCAAGATGTCGGCATAGCTTT.......................................................................	23	1	35.00	27.00	1.00	7.00	0.00
............................GGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	17.00	1.50	13.50	2.00	0.00
............................TGGCAAGATGTCGGCATAGCTAA.......................................................................	23	2	17.00	5.50	6.50	4.50	0.50
................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	17.00	4.50	11.00	1.00	0.50
............................AGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	16.50	4.00	9.50	2.50	0.50
............................TGGCAAGATGTCGGCATAACTGA.......................................................................	23	2	16.50	5.50	8.00	3.00	0.00
............................TGGCAAGATGTCTGCATAGCTGA.......................................................................	23	2	16.00	2.50	11.50	2.00	0.00
............................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	16.00	11.00	4.50	0.50	0.00
............................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	15.50	5.00	9.50	1.00	0.00
...........................CTGGCAAGATGTCGGCATAGCTG........................................................................	23	2	15.50	10.00	2.50	3.00	0.00
............................TGGCAAGATGTCGACATAGCTGA.......................................................................	23	2	15.00	6.50	6.50	1.50	0.50
............................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	14.50	9.00	3.50	1.50	0.50
............................TGGCAAGATCTCGGCATAGCTGA.......................................................................	23	2	14.00	5.50	6.00	2.50	0.00
............................TGGCAAGATGTCCGCATAGCTGA.......................................................................	23	2	14.00	4.00	9.00	0.50	0.50
............................TGGCAAGCTGTCGGCATAGCTGA.......................................................................	23	2	13.50	4.50	8.00	1.00	0.00
............................TGGCAAGATGTCGGCATTGCTGA.......................................................................	23	2	13.50	1.00	11.50	1.00	0.00
............................TGGCAAAATGTCGGCATAGCTGA.......................................................................	23	2	13.50	6.50	6.00	0.50	0.50
............................TGGCCAGATGTCGGCATAGCTGA.......................................................................	23	2	13.00	4.50	6.50	2.00	0.00
............................TGGCAAGACGTCGGCATAGCTGA.......................................................................	23	2	13.00	7.50	2.50	3.00	0.00
............................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	13.00	6.50	5.50	1.00	0.00
............................TGGCAAGATGTCGGAATAGCTGAT......................................................................	24	2	13.00	8.50	1.50	3.00	0.00
..........................................................................CGCTATGCTGCATCTAGTCAG...........................	21	1	25.00	3.00	21.00	1.00	0.00
............................TGGCATGATGTCGGCATAGCTGA.......................................................................	23	2	12.50	4.00	7.00	1.50	0.00
............................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	12.50	7.50	2.00	1.00	2.00
............................TGGCAAGATGTCGGCATAGTTGA.......................................................................	23	2	12.50	3.50	8.00	1.00	0.00
............................TGGCAAGATGTCGGCTTAGCTGA.......................................................................	23	2	12.00	2.50	9.50	0.00	0.00
............................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	12.00	6.50	3.50	2.00	0.00
.............................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	10.50	8.00	0.50	0.00	2.00
............................TGGCAAGATGTCGGCATAGT..........................................................................	20	2	10.50	10.00	0.00	0.50	0.00
............................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	10.50	6.50	0.50	3.00	0.50
............................TGGCAAGATGTCGGCATAGCGGA.......................................................................	23	2	10.50	2.50	6.00	2.00	0.00
............................CGGCAAGATGTCGGCATAGCTG........................................................................	22	2	10.00	6.50	0.50	2.00	1.00
............................TGGCAAGAGGTCGGCATAGCTGA.......................................................................	23	2	10.00	0.50	6.50	3.00	0.00
............................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	9.50	5.00	3.50	1.00	0.00
............................TGGCAAGATGTCGGGATAGCTGA.......................................................................	23	2	9.50	2.50	6.50	0.50	0.00
............................TGGCAAGATGTCGGAATAG...........................................................................	19	2	9.50	8.50	0.00	0.50	0.50
............................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	19.00	16.00	1.00	2.00	0.00
..............................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	9.50	2.50	2.00	2.00	3.00
............................TGGCAAGATGTCGGCATAGGTGA.......................................................................	23	2	9.50	0.00	9.00	0.50	0.00
............................TGACAAGATGTCGGCATAGCTG........................................................................	22	2	9.00	3.00	0.50	5.50	0.00
............................TGGCAAGATGTCGGCATAGCCG........................................................................	22	2	9.00	4.00	2.00	3.00	0.00
............................TGGCAAGATGTCGGCATAGCTC........................................................................	22	2	9.00	4.00	0.50	4.00	0.50
............................TGGCACGATGTCGGCATAGCTGA.......................................................................	23	2	9.00	4.00	4.50	0.50	0.00
..........................................................................CGCTATGCTGCATCTAGTCA............................	20	1	17.00	8.00	1.00	8.00	0.00
............................TGGCAAGATGTCGGCATAGCAT........................................................................	22	1	17.00	16.00	0.00	1.00	0.00
............................TGGCAAGATGTCGGCATAGA..........................................................................	20	2	8.50	8.00	0.00	0.50	0.00

droPer1 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

super_4:278992-279106 +

80.91

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC CG------TACCGCATCTGTTGGTAAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTTTGAGAACGCTATGCTGCATCTAGTCAGTTATTCAATGGAACAGTCAAC-AGATC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	17924.00	8110.00	1515.00	2311.50	2443.00	3544.50
............................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	8064.00	2513.50	131.50	1710.00	1864.00	1845.00
............................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	4039.00	923.50	16.00	1181.50	1688.00	230.00
............................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	720.00	84.00	1.50	118.00	120.50	396.00
............................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	704.00	8.00	5.50	3.00	12.00	675.50
............................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	492.00	166.50	13.00	112.00	148.00	52.50
............................TGGCAAGATGTCGGCATAGCTGAAGTT...................................................................	27	1	665.00	445.00	5.00	24.00	22.00	169.00
............................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	324.00	196.00	8.50	46.50	57.50	15.50
............................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	315.00	93.00	0.50	65.50	155.50	0.50
............................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	297.50	178.00	2.50	8.50	11.00	97.50
............................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	1	587.00	354.00	10.00	89.00	97.00	37.00
............................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	283.00	159.50	29.00	10.00	10.50	74.00
............................TGGCAAGATGTCGGCATAG...........................................................................	19	2	180.50	77.00	0.50	46.00	52.50	4.50
..........................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	352.00	6.00	163.00	75.00	106.00	2.00
............................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	158.50	1.00	5.00	31.50	49.00	72.00
............................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	120.00	84.50	13.50	13.50	6.50	2.00
............................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	85.50	32.50	0.50	2.00	0.50	50.00
............................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	162.00	70.00	1.00	29.00	48.00	14.00
............................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	54.50	2.00	4.00	8.00	38.50	2.00
............................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	53.50	45.50	1.00	2.50	4.00	0.50
............................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	47.00	9.50	0.00	8.00	29.00	0.50
............................TGGCAAGATGGCGGCATAGCT.........................................................................	21	2	46.00	0.00	0.00	7.50	38.50	0.00
............................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	43.00	8.00	0.00	0.50	0.50	34.00
............................TGGCAAGATGGCGGCATAGCTG........................................................................	22	2	41.50	2.00	0.50	4.50	34.00	0.50
............................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	36.50	2.00	1.00	1.50	2.50	29.50
............................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	36.50	12.50	0.00	1.50	3.50	19.00
............................TGGCAAGATGTCGGCATAGCTGAAGT....................................................................	26	1	69.00	42.00	0.00	3.00	6.00	18.00
............................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	65.00	42.00	0.00	7.00	10.00	6.00
............................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	32.50	5.50	3.00	5.50	15.50	3.00
............................TGGCAAGATGTCGGCATAGCTGAAG.....................................................................	25	1	64.00	42.00	0.00	6.00	5.00	11.00
.............................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	29.50	13.50	2.00	2.50	2.00	9.50
............................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	25.00	9.50	1.00	3.50	7.00	4.00
................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	24.00	5.00	3.50	1.00	1.00	13.50
............................TGGCAAGATGTCGGCATAGCGG........................................................................	22	2	22.50	0.00	0.00	0.50	5.00	17.00
............................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	22.00	6.50	1.00	3.00	9.00	2.50
..............................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	21.50	4.00	0.00	1.50	1.50	14.50
............................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	21.00	6.00	0.00	0.00	1.00	14.00
............................AGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	20.50	7.00	0.50	2.00	8.00	3.00
.............................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	20.50	10.50	0.00	0.00	0.00	10.00
............................TGGCAAGATGTCGGCATAGCC.........................................................................	21	2	20.00	0.00	0.00	0.00	4.00	16.00
............................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	20.00	1.50	2.00	5.50	10.00	1.00
............................TGGCAAGATGTCGGCATAGCTC........................................................................	22	2	20.00	1.50	0.00	5.50	13.00	0.00
............................TGGCAAGATGTCAGCATAGCTG........................................................................	22	2	18.50	2.50	1.00	3.50	5.00	6.50
............................TGGCAGGATGTCGGCATAGCTGA.......................................................................	23	2	18.50	3.50	2.50	7.00	4.00	1.50
............................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	18.50	8.50	2.00	2.50	1.50	4.00
............................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	18.50	4.50	2.00	2.50	3.50	6.00
.................................AGATGTCGGCATAGCTGA.......................................................................	18	2	18.00	1.00	0.00	0.00	0.50	16.50
............................TGGCAAGATGTCGGAATAGCTGG.......................................................................	23	2	17.50	0.00	0.50	0.00	0.00	17.00
............................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	17.50	5.50	2.00	0.00	5.50	4.50
............................TGGCAAGATGTCGGCATAGATGA.......................................................................	23	2	17.50	5.50	2.50	6.00	3.00	0.50
............................TGGCAAGATGTCGGCGTAGCTGA.......................................................................	23	2	17.50	3.50	4.50	3.00	6.00	0.50
............................TGGCAAGATGCCGGCATAGCTG........................................................................	22	2	17.50	4.00	0.00	2.50	9.00	2.00
............................TGGAAAGATGTCGGCATAGCTGA.......................................................................	23	2	16.50	7.00	2.00	2.50	5.00	0.00
............................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	16.00	4.50	1.00	2.00	3.50	5.00
............................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	16.00	8.50	1.00	2.50	2.50	1.50
............................TGGCAAGATGACGGCATAGCT.........................................................................	21	2	15.50	0.50	0.00	3.00	12.00	0.00
............................TGGCAAGATGTCGGCATAGCTTA.......................................................................	23	2	15.00	3.50	2.50	2.00	6.00	1.00
............................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	15.00	8.50	1.50	1.00	3.50	0.50
............................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	15.00	9.00	0.50	1.50	3.00	1.00
............................TGGCAAGATGTCTGCATAGCTGA.......................................................................	23	2	14.50	6.50	1.00	2.00	5.00	0.00
............................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	14.50	0.50	6.50	1.00	6.00	0.50
............................TGTCAAGATGTCGGCATAGCT.........................................................................	21	2	14.50	0.50	0.50	0.00	1.50	12.00
............................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	14.00	2.50	0.00	5.50	5.50	0.50
............................TGGCAAGATGACGGCATAGCTG........................................................................	22	2	14.00	0.50	0.00	2.50	10.50	0.50
............................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	13.50	5.50	0.00	0.50	2.00	5.50
............................TGGCAAGAGGTCGGCATAGCTGA.......................................................................	23	2	13.50	0.00	0.50	1.00	11.50	0.50
............................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	13.50	4.50	3.00	1.50	2.50	2.00
............................TGGCAAGATGTCGGCACAGCTGA.......................................................................	23	2	13.50	2.50	2.00	2.50	5.50	1.00
............................CGGCAAGATGTCGGCATAGCTG........................................................................	22	2	13.00	2.50	0.00	3.00	6.00	1.50
............................GGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	13.00	3.50	2.00	1.50	5.50	0.50
............................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	13.00	2.50	0.00	3.00	5.50	2.00
............................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	13.00	3.50	0.50	4.50	3.00	1.50
............................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	12.50	3.50	0.00	0.00	1.50	7.50
............................TGGCAAGGTGTCGGCATAGCTG........................................................................	22	2	12.50	2.00	0.00	2.50	6.00	2.00
............................TGGCAAGATGTCGGCATAGCTCA.......................................................................	23	2	11.50	1.50	1.00	5.00	3.00	1.00
............................TGGCAAGATGTCGGCATAGCTTT.......................................................................	23	1	23.00	6.00	0.00	3.00	14.00	0.00
............................TGGCAAGATGCCGGCATAGCT.........................................................................	21	2	11.50	0.00	0.00	1.50	10.00	0.00
............................TGGCAAGATGTCGGCAGAGCTGA.......................................................................	23	2	11.50	0.00	2.50	1.00	7.00	1.00
............................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	11.50	0.50	5.00	1.00	5.00	0.00
............................TGGCAAGAGGTCGGCATAGCTG........................................................................	22	2	11.50	0.50	0.00	1.50	9.50	0.00
............................TGGCAAGATGTCGGTATAGCTGA.......................................................................	23	2	11.50	3.00	1.50	1.50	4.00	1.50
...............................CAAGATGTCGGCATAGCTGA.......................................................................	20	2	11.00	2.50	1.00	1.50	0.50	5.50
............................TGGCAAGATGTCGGCATAGCCG........................................................................	22	2	11.00	1.00	0.00	3.00	6.00	1.00
............................TGGCAAGATGTCGGAATAGCTGT.......................................................................	23	2	11.00	8.00	1.00	0.50	1.50	0.00
............................TGGCAAGATGTCTGCATAGCTG........................................................................	22	2	10.50	2.00	0.00	2.00	3.50	3.00
............................TGGCAAGATGTCGGCATAGCG.........................................................................	21	2	10.50	0.00	0.00	1.50	5.50	3.50
.............................GGCAAGATGTCGGCATAGCTG........................................................................	21	2	10.50	6.50	0.00	2.50	0.50	1.00
............................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	20.00	11.00	0.00	2.00	4.00	3.00
............................TGGCAAGATGTCGCCATAGCTG........................................................................	22	2	10.00	0.50	0.00	2.50	7.00	0.00
............................TGGCAAGATGTCGTCATAGCTG........................................................................	22	2	10.00	4.50	0.00	1.00	1.50	3.00
............................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	10.00	1.50	1.00	1.50	3.50	2.50
............................TGGCAAGATGTCGGCATACCTG........................................................................	22	2	10.00	0.00	0.00	3.00	7.00	0.00
............................TGGCAAGATGTCGGCATAGCTGAC......................................................................	24	2	9.50	3.00	0.50	3.50	2.50	0.00
............................TGGCAAGATGGCGGCATAGCTGT.......................................................................	23	1	19.00	0.00	0.00	4.00	15.00	0.00
............................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	9.50	7.50	0.00	1.00	1.00	0.00
...........................CTGGCAAGATGTCGGCATAGCTG........................................................................	23	2	9.50	0.50	0.00	4.50	4.50	0.00
............................TGGCAAGATGTCGGCATAGTTGA.......................................................................	23	2	9.50	4.00	1.50	1.00	1.50	1.50
............................TGGCAAGATGTCGGCATAGCTAA.......................................................................	23	2	9.00	1.50	1.50	4.00	1.50	0.50
............................TGGCACGATGTCGGCATAGCTG........................................................................	22	2	9.00	0.00	0.00	7.00	2.00	0.00
............................TGGCAAGATGTCGACATAGCTGA.......................................................................	23	2	9.00	2.00	1.00	2.50	3.00	0.50
............................TGGCAAGATGTCGGAATAGCTGAA......................................................................	24	2	9.00	0.50	0.00	0.50	0.00	8.00

droWil1 - 2 hits found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_180700:4557862-4557981 -

70.31

CG--ATCGTATATCAACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTT-T-GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGCGAG---ATC CATCATCAT-TATCAT--CTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATA-------AT-ATTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAATAGAGCAATCGACAATATTATC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................TGGCAAGATGTCGGCATAGCTGA.............................................................................	23	2	116514.00	24464.00	54778.00	27918.50	9353.50
...............................TGGCAAGATGTCGGCATAGCTG..............................................................................	22	2	22021.50	4341.00	5382.50	2236.00	10062.00
...............................TGGCAAGATGTCGGCATAGCT...............................................................................	21	2	8836.50	2611.00	632.00	967.00	4626.50
...............................TGGCAAGATGTCGGCATAGC................................................................................	20	2	3292.50	437.00	107.50	146.00	2602.00
...............................TGGCAAGATGTCGGAATAGCTGA.............................................................................	23	2	2656.00	922.50	1586.00	132.00	15.50
...............................TGGCAAGATGTCGGCATAGCTGAT............................................................................	24	1	4254.00	979.00	1705.00	1171.00	399.00
...............................TGGCAAGATGTCGGCATAGCTGG.............................................................................	23	2	1532.00	23.00	49.00	27.00	1433.00
...............................TGGCAAGATGTCGGCATAGCTGT.............................................................................	23	2	1494.00	452.50	232.50	329.00	480.00
...............................TGGCAAGATGTCGGAATAGCT...............................................................................	21	2	1139.00	737.00	101.50	22.50	278.00
...............................TGGCAAGATGTCGGCATAGCTGAA............................................................................	24	2	843.00	257.50	372.50	148.50	64.50
...............................................................................CGCTATGCTGCATCTAGTCAGT..............................	22	1	1580.00	18.00	1365.00	189.00	8.00
...............................TGGCAAGATGTCGGAATAGCTG..............................................................................	22	2	529.50	275.00	227.50	23.50	3.50
...............................TGGCAAGATGTCGGCATAGCTT..............................................................................	22	2	506.50	258.50	19.50	106.50	122.00
...............................TGGCAAGATGTCGGCATAGCTGC.............................................................................	23	2	454.50	12.00	39.00	67.50	336.00
..............................TTGGCAAGATGTCGGCATAGCTGA.............................................................................	24	2	453.50	63.50	256.00	82.00	52.00
...............................TGGCAAGATGTCGGCATAGCC...............................................................................	21	2	419.50	4.50	1.00	2.00	412.00
...............................TGGCAAGATGTCGGCATAG.................................................................................	19	2	351.50	152.50	66.50	56.00	76.50
...............................TGGCAAGATGTCGGCATAGCTGATT-------....................................................................	25	1	659.00	111.00	211.00	215.00	122.00
...............................TTGCAAGATGTCGGCATAGCTGA.............................................................................	23	2	298.50	17.50	128.00	34.50	118.50
...............................TGGCAAGATGCCGGCATAGCTGA.............................................................................	23	2	268.50	33.50	138.50	90.00	6.50
...............................TGGCAAGATGTCGGAATAGC................................................................................	20	2	267.50	196.00	15.00	7.50	49.00
...............................TGGAAAGATGTCGGCATAGCTGA.............................................................................	23	2	228.50	10.50	129.00	87.50	1.50
...............................CGGCAAGATGTCGGCATAGCTGA.............................................................................	23	2	215.50	35.00	85.00	89.00	6.50
...............................TGTCAAGATGTCGGCATAGCTGA.............................................................................	23	2	205.50	12.50	99.00	41.00	53.00
..............................TTGGCAAGATGTCGGCATAGC................................................................................	21	2	198.50	14.00	7.00	5.00	172.50
...............................TGGCAAGATGTAGGCATAGCTGA.............................................................................	23	2	197.50	8.50	67.00	114.00	8.00
..............................CTGGCAAGATGTCGGCATAGCTGA.............................................................................	24	2	184.50	29.00	104.50	50.50	0.50
...............................TGGCAAGATGTCGGCATAGATGA.............................................................................	23	2	183.00	6.50	62.50	113.50	0.50
...............................TGGCAAGATGTCTGCATAGCTGA.............................................................................	23	2	169.00	5.50	135.50	20.50	7.50
...............................TGGCAAGATGTCAGCATAGCTGA.............................................................................	23	2	161.50	18.00	73.00	50.50	20.00
...............................TGGCAAGATGTCGGCATAGCTGTT............................................................................	24	1	311.00	48.00	18.00	46.00	199.00
..............................TTGGCAAGATGTCGGCATAGCT...............................................................................	22	2	152.50	5.00	6.50	4.50	136.50
...............................TCGCAAGATGTCGGCATAGCTGA.............................................................................	23	2	152.50	26.00	37.00	24.50	65.00
..............................TTGGCAAGATGTCGGCATAGCTG..............................................................................	23	2	148.50	13.00	43.50	6.00	86.00
................................TGCAAGATGTCGGCATAGCTGA.............................................................................	22	2	144.50	19.00	43.50	41.50	40.50
...............................TGCCAAGATGTCGGCATAGCTGA.............................................................................	23	2	132.00	20.50	56.50	32.00	23.00
................................GGCAAGATGTCGGCATAGCTGA.............................................................................	22	2	123.00	20.00	42.00	48.50	12.50
...................................AAGATGTCGGCATAGCTGA.............................................................................	19	2	123.00	30.50	39.00	32.00	21.50
...............................TGGCAAGGTGTCGGCATAGCTGA.............................................................................	23	2	120.50	25.00	57.50	32.50	5.50
...............................TGGCGAGATGTCGGCATAGCTGA.............................................................................	23	2	120.50	21.50	56.00	39.50	3.50
...............................TGGCAAGATGTCGGCATAGCCGA.............................................................................	23	2	115.50	28.50	55.00	25.00	7.00
...............................TGGCCAGATGTCGGCATAGCTGA.............................................................................	23	2	113.50	9.00	74.50	30.00	0.00
...............................TGGCAAGATGTTGGCATAGCTGA.............................................................................	23	2	112.00	22.00	59.00	25.50	5.50
...............................TGACAAGATGTCGGCATAGCTGA.............................................................................	23	2	111.00	16.50	42.00	45.00	7.50
...............................TGGCAAGATGTCGGCATATCTGA.............................................................................	23	2	109.50	8.50	81.50	14.50	5.00
...............................TAGCAAGATGTCGGCATAGCTGA.............................................................................	23	2	106.00	20.00	36.50	43.50	6.00
...............................TGGCAAGATGTCGTCATAGCTGA.............................................................................	23	2	101.00	6.50	65.50	17.50	11.50
...............................TGTCAAGATGTCGGCATAGCT...............................................................................	21	2	100.50	3.00	1.50	4.00	92.00
...............................TGGCAAGATTTCGGCATAGCTGA.............................................................................	23	2	100.50	19.50	52.50	20.00	8.50
...............................TGGCAAGATGTCGGCACAGCTGA.............................................................................	23	2	100.00	23.50	44.00	30.50	2.00
...............................TGGCAAGATGTCGACATAGCTGA.............................................................................	23	2	97.50	10.50	31.00	51.50	4.50
...............................TGGCAAGATGTCGGCATAGCTGAAA-------....................................................................	25	2	95.00	31.00	39.00	18.50	6.50
.................................GCAAGATGTCGGCATAGCTGA.............................................................................	21	2	95.00	19.00	14.00	20.50	41.50
...............................TGGCAAGATGTCGGCATAGCTTA.............................................................................	23	2	91.50	6.50	65.50	19.50	0.00
...............................TGGCAAGATGTCGGCATAGCTAA.............................................................................	23	2	91.00	5.50	14.00	70.50	1.00
...............................TGGCAAGATGTCGGCATAACTGA.............................................................................	23	2	89.50	13.00	26.00	48.00	2.50
...............................TGGCAAGATGTCGGCATACCTGA.............................................................................	23	2	86.00	13.00	41.00	29.00	3.00
...............................TGGCAAGACGTCGGCATAGCTGA.............................................................................	23	2	84.00	18.00	36.50	29.00	0.50
...............................AGGCAAGATGTCGGCATAGCTGA.............................................................................	23	2	83.50	9.00	23.00	49.50	2.00
...............................TGGTAAGATGTCGGCATAGCTGA.............................................................................	23	2	80.50	12.00	39.00	25.00	4.50
...............................TGGCAAGATGTCGCCATAGCTGA.............................................................................	23	2	79.00	21.00	32.50	21.00	4.50
...............................TGGCAGGATGTCGGCATAGCTGA.............................................................................	23	2	76.00	18.50	37.00	18.50	2.00
...............................TGGCAAGATGACGGCATAGCTGA.............................................................................	23	2	74.50	8.50	17.50	43.50	5.00
...............................TGGCAAGATATCGGCATAGCTGA.............................................................................	23	2	73.50	10.50	24.00	37.00	2.00
...............................TGGCAAGATCTCGGCATAGCTGA.............................................................................	23	2	73.50	17.00	34.00	20.00	2.50
...............................TGGCAAGATGTCGGCATAGCTGAAT-------....................................................................	25	2	73.00	17.00	7.00	24.00	25.00
...............................TGGCAAGATGTCGGCATGGCTGA.............................................................................	23	2	71.50	14.00	29.50	24.50	3.50
...............................TGGCAAGATGTCGGCGTAGCTGA.............................................................................	23	2	70.00	14.50	34.00	20.50	1.00
...............................TGGCAAGATGTCGGTATAGCTGA.............................................................................	23	2	67.00	11.00	28.50	25.00	2.50
...............................TGGCAAGATGTCGGCCTAGCTGA.............................................................................	23	2	64.50	11.00	31.00	22.50	0.00
.............................ATTGGCAAGATGTCGGCATAGCT...............................................................................	23	1	124.00	7.00	46.00	2.00	69.00
...............................TGGCAAGATGTCGGCATAGCG...............................................................................	21	2	61.00	0.50	0.50	0.00	60.00
...............................TGGCAAGCTGTCGGCATAGCTGA.............................................................................	23	2	60.50	15.00	19.00	26.50	0.00
...............................TGGCAAGATGTCGGCATAGCTA..............................................................................	22	2	60.00	15.50	16.50	15.00	13.00
...............................GGGCAAGATGTCGGCATAGCTGA.............................................................................	23	2	59.50	6.50	15.50	37.00	0.50
...............................TGGCAAGATGTCCGCATAGCTGA.............................................................................	23	2	58.00	16.00	21.50	14.00	6.50
...............................TGGCAAGATGTCGGCATAGCTCA.............................................................................	23	2	55.50	13.00	20.00	21.50	1.00
...............................TGGCAAGATGTCGGCATCGCTGA.............................................................................	23	2	54.50	12.50	24.50	17.00	0.50
...............................TGGCAAGATGTCGGCATAGCGG..............................................................................	22	2	52.50	1.50	0.50	0.00	50.50
...............................TGGCAATATGTCGGCATAGCTGA.............................................................................	23	2	51.50	4.50	44.00	3.00	0.00
...............................TTGCAAGATGTCGGCATAGCT...............................................................................	21	2	50.00	2.50	0.50	2.00	45.00
...............................TGGCAAGATTTCGGCATAGCTG..............................................................................	22	2	50.00	2.50	8.50	2.50	36.50
...............................TGGCAAGATGTCGGCATAGCTGATT-------T...................................................................	26	1	98.00	9.00	37.00	42.00	10.00
.................................TCAAGATGTCGGCATAGCTGA.............................................................................	21	2	49.00	6.00	20.00	13.50	9.50
...............................TGGCAAGATGTCGGCATAGTTGA.............................................................................	23	2	47.00	6.00	15.00	24.50	1.50
...............................TGGCAAGATGTCAGCATAGCTG..............................................................................	22	2	45.50	6.50	5.50	6.00	27.50
...............................TGGCAAGATxTCGGCATAGCTGA.............................................................................	22	2	44.50	8.00	24.50	11.50	0.50
..................................CAAGATGTCGGCATAGCTGA.............................................................................	20	2	43.00	4.50	10.50	10.00	18.00
...............................TGGCACGATGTCGGCATAGCTGA.............................................................................	23	2	42.50	7.50	13.00	21.50	0.50
...............................TGGCAACATGTCGGCATAGCTGA.............................................................................	23	2	38.50	12.50	23.00	2.50	0.50
...............................TGCCAAGATGTCGGCATAGCT...............................................................................	21	2	37.50	2.00	1.50	1.00	33.00
...............................TGGCAAGATGTCGGAATAGCTGAT............................................................................	24	2	36.50	20.00	11.00	2.00	3.50
...............................TGGCAAGATGTCGGCATAGCTC..............................................................................	22	2	34.00	9.00	3.50	4.50	17.00
...............................TGGCAAGATGTCTGCATAGCTG..............................................................................	22	2	34.00	2.00	17.50	2.00	12.50
...............................TGGCAAGATGTCGGCATAGCA...............................................................................	21	2	33.50	15.50	2.50	6.00	9.50
...............................TGTCAAGATGTCGGCATAGCTG..............................................................................	22	2	33.50	2.00	13.50	4.50	13.50
...............................TGGCATGATGTCGGCATAGCTGA.............................................................................	23	2	32.50	6.00	12.00	14.00	0.50
...............................TGGCAAGATGTCGGCATAGCTGAC............................................................................	24	2	31.50	4.50	16.50	5.00	5.50
..............................TTGGCAAGATGTCGGCATAGCTGT.............................................................................	24	2	31.00	0.00	2.50	1.00	27.50
..............................CTGGCAAGATGTCGGCATAGCTG..............................................................................	23	2	30.50	10.00	11.50	8.00	1.00
...............................TGGCAAGATGCCGGCATAGCTG..............................................................................	22	2	29.50	8.50	10.50	6.50	4.00

scaffold_181089:4699915-4700037 -

41.92

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAG-CTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACA--GT--CAGCGAGATC CGACATTGCTTCAATTTTTTTTAGTAGTCGTACACATGTAAT---AGATTAAAGATGAATATTTGCAAAAAAAAAAATCACAC--AATCCAGAAGATCTGTTTACATAAATATTGCAATTGTGATTTT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.........................................................AGTATTGGCAAAAAAAAA.....................................................	18	2	0.50	0.00	0.50	0.00	0.00
...........................................................TATTGGGAAAAAAAAAAA...................................................	18	5	0.20	0.00	0.20	0.00	0.00
.........................................................AATATTGGGAAAAAAAAA.....................................................	18	2	0.50	0.00	0.50	0.00	0.00
..........................................................................................AGAACAxCTGTTTACATAAA..................	19	1	1.00	0.00	1.00	0.00	0.00
.................................................................CAAAAAAAAAAGTCACAC--GA.........................................	20	1	1.00	1.00	0.00	0.00	0.00
.........................................................AATATTAGGAAAAAAAAAAA...................................................	20	2	0.50	0.00	0.50	0.00	0.00
...........................................................TAGTTGAAAAAAAAAAAA...................................................	18	17	0.06	0.00	0.06	0.00	0.00
...........................................................................AATCACAC--CCTCCAGAAGA................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................AAGATTTGGAAAAAAAAA.....................................................	18	2	0.50	0.00	0.50	0.00	0.00
...................................................................AAAAAAGAAAACACAC--AAT........................................	19	4	0.25	0.00	0.25	0.00	0.00
..............................................................................................................TATGGAAATTGTGATTTT	18	2	0.50	0.00	0.50	0.00	0.00
......TGAATCAATTTTTTTTAGT.......................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................AATAGTTACAAAAAAAAAA....................................................	19	5	0.20	0.00	0.20	0.00	0.00
...................................................................AAAAAAAAAAGGACAC--AA.........................................	18	10	0.10	0.00	0.10	0.00	0.00

droVir3 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_12875:16937652-16937767 -

76.67

CGATCG-----TATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC T---CGCCTCGCA-------TCTGTTGTTCAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATTTTTATAGCGCTATGCTGCATCTAGTCAGTTATTCAATGGAACAATCAACAAAA--	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	54681.50	30066.00	1672.50	12112.00	7907.00	2924.00
.................................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	20326.00	6175.00	1052.50	609.00	9275.00	3214.50
.................................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	11036.00	4470.50	842.50	109.50	4232.00	1381.50
.................................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	3246.50	374.00	55.00	11.50	2063.50	742.50
.................................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	2517.50	27.50	7.00	45.50	1808.50	629.00
.................................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	2060.00	1168.50	5.00	14.00	833.50	39.00
.................................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	1278.00	1043.00	9.00	156.50	67.50	2.00
.................................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	862.50	381.50	89.00	69.50	186.50	136.00
.................................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	848.50	512.00	65.00	98.50	82.50	90.50
.................................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	639.00	381.50	107.50	13.00	84.50	52.50
.................................TGGCAAGATGTCGGCATAGCC.........................................................................	21	2	574.50	5.50	4.50	0.00	400.50	164.00
.................................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	506.50	458.00	7.00	34.00	6.50	1.00
.................................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	2	459.50	302.50	37.50	42.50	47.00	30.00
.................................TGGCAAGATGTCGGCATAG...........................................................................	19	2	452.50	275.00	60.50	3.50	84.50	29.00
.................................TGGCAAGATGTCGGCATAGCTTA.......................................................................	23	2	445.50	199.00	1.50	245.00	0.00	0.00
.................................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	435.00	286.00	1.00	2.50	138.50	7.00
.................................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	435.00	109.00	48.00	12.00	107.00	159.00
.................................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	190.00	22.50	20.00	99.50	26.00	22.00
.................................TGGCAAGATGTCGGCATAGCTGACG.....................................................................	25	1	331.00	253.00	10.00	45.00	15.00	8.00
.................................TGGCAAGATGTCGGCATAGCG.........................................................................	21	2	165.00	2.00	1.50	0.50	132.50	28.50
.................................TGGCAAGATGTCGGCATAGCGG........................................................................	22	2	141.50	2.50	2.00	2.00	108.00	27.00
.................................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	122.00	18.50	0.50	23.00	70.50	9.50
...............................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	229.00	44.00	70.00	113.00	2.00	0.00
.................................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	104.50	22.50	0.00	28.50	46.50	7.00
.................................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	104.00	56.50	6.00	33.50	6.50	1.50
.................................TGGCAAGATGTCGGCATAGCTGACGTT...................................................................	27	1	191.00	81.00	4.00	106.00	0.00	0.00
.................................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	95.00	8.00	3.50	74.00	6.50	3.00
.................................TGGCAAGATGTCTGCATAGCTGA.......................................................................	23	2	90.50	12.50	0.50	71.50	4.50	1.50
.................................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	88.00	72.50	0.00	1.00	14.00	0.50
.................................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	164.00	71.00	12.00	25.00	30.00	26.00
.................................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	81.50	42.50	3.00	33.50	1.50	1.00
.................................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	78.50	41.00	5.00	21.00	10.50	1.00
.................................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	78.50	43.00	8.50	0.00	18.50	8.50
.................................TGGCAAGATGTCGGCATAGCTCA.......................................................................	23	2	77.50	21.00	4.00	50.50	2.00	0.00
.................................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	76.50	20.50	20.00	33.50	2.00	0.50
.................................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	71.50	48.50	5.50	5.50	7.50	4.50
.................................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	71.00	28.50	3.50	34.50	3.00	1.50
................................CTGGCAAGATGTCGGCATAGCTGA.......................................................................	24	2	68.50	47.00	2.50	18.00	1.00	0.00
.................................TGTCAAGATGTCGGCATAGCT.........................................................................	21	2	65.50	5.50	0.50	0.00	50.00	9.50
.................................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	65.00	23.00	1.00	40.50	0.00	0.50
.................................TGGCAAGATGTCGGCACAGCTGA.......................................................................	23	2	64.00	35.00	2.00	22.50	3.00	1.50
.................................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	64.00	11.50	1.00	9.50	36.50	5.50
.................................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	61.50	11.00	1.00	44.00	4.50	1.00
.................................TGGCAAGATGTCGGCATAGCTAA.......................................................................	23	2	61.50	38.00	2.00	18.50	2.00	1.00
.................................TGGCAAGATGTCGGAATAGCTGAT......................................................................	24	2	61.00	38.50	0.00	5.00	17.00	0.50
.................................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	59.50	22.00	0.50	31.00	3.00	3.00
................................TTGGCAAGATGTCGGAATAGCT.........................................................................	22	2	59.00	22.00	0.00	0.50	33.00	3.50
.................................TGGCAAGATGTCGGAATAGCC.........................................................................	21	2	58.00	1.00	0.00	0.00	54.00	3.00
.................................TGGCAAGATGTCGGAATAGCTGT.......................................................................	23	2	57.00	52.50	0.50	2.00	2.00	0.00
.................................TGGCAAGATGTCGGCATAGATGA.......................................................................	23	2	56.00	33.00	1.50	15.00	5.00	1.50
.................................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	54.00	8.00	2.00	43.50	0.50	0.00
.................................GGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	54.00	27.50	2.00	23.00	1.50	0.00
.................................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	51.50	23.00	2.50	20.00	5.00	1.00
.................................TGGCAAGATGTCGGCATAGCTGAC......................................................................	24	1	102.00	59.00	5.00	25.00	7.00	6.00
.................................TGGCAAGATGTCGGCATAGCTTT.......................................................................	23	1	100.00	63.00	26.00	1.00	5.00	5.00
.................................TGGCAAGATGTCGGCAAAGCTGA.......................................................................	23	2	49.00	46.50	0.00	2.00	0.00	0.50
..................................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	48.50	18.50	0.00	1.50	22.50	6.00
.................................TGGCAAGATGTCGGCATAACTGA.......................................................................	23	2	46.00	17.50	2.00	22.50	2.50	1.50
.................................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	45.50	23.00	5.00	0.50	11.50	5.50
..................................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	45.50	21.00	2.00	6.00	12.00	4.50
.................................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	45.50	24.00	1.00	17.50	3.00	0.00
.................................TGGCAGGATGTCGGCATAGCTGA.......................................................................	23	2	45.00	24.00	1.50	15.50	3.00	1.00
.....................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	45.00	12.50	0.50	5.00	20.50	6.50
.................................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	44.00	20.50	2.00	11.50	5.50	4.50
.................................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	43.50	12.00	2.50	20.50	7.00	1.50
.................................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	42.50	14.50	3.50	22.00	1.00	1.50
.................................TGGCAAGATGTCGGCGTAGCTGA.......................................................................	23	2	41.50	17.50	2.50	19.50	1.50	0.50
.................................TGGCAAGATGTCCGCATAGCTGA.......................................................................	23	2	41.00	9.50	1.00	30.50	0.00	0.00
.................................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	40.50	17.50	1.50	5.00	9.50	7.00
.................................TGGCAAGATGTCGACATAGCTGA.......................................................................	23	2	40.50	19.50	2.00	14.50	3.00	1.50
.................................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	40.00	13.50	0.50	8.00	16.50	1.50
.................................TGGCAAGATTTCGGCATAGCTG........................................................................	22	2	38.00	2.50	0.50	2.50	27.50	5.00
.................................TGGCAAGATCTCGGCATAGCTGA.......................................................................	23	2	36.50	9.00	2.50	22.50	2.50	0.00
.................................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	36.00	18.00	2.50	9.00	5.50	1.00
.................................TGGCAATATGTCGGCATAGCTGA.......................................................................	23	2	36.00	4.00	1.00	30.00	1.00	0.00
.................................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	35.50	13.50	2.00	15.50	4.00	0.50
.................................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	35.00	20.00	1.50	9.00	4.00	0.50
...................................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	34.50	5.50	1.00	3.00	22.50	2.50
.................................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	34.50	13.50	4.50	10.50	4.00	2.00
.................................TGGCAAGATATCGGCATAGCTGA.......................................................................	23	2	34.50	17.00	1.50	14.00	2.00	0.00
.................................TGGCAAGATGTCGGTATAGCTGA.......................................................................	23	2	34.00	13.00	5.50	13.00	2.50	0.00
....................................CAAGATGTCGGCATAGCTGA.......................................................................	20	2	33.00	4.50	0.00	0.50	21.50	6.50
.................................CGGCAAGATGTCGGCATAGCTG........................................................................	22	2	32.50	9.00	4.00	3.50	10.50	5.50
.................................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	64.00	26.00	2.00	12.00	15.00	9.00
.................................TGGCAAGACGTCGGCATAGCTGA.......................................................................	23	2	30.50	12.50	5.00	11.00	1.50	0.50
.................................TTGCAAGATGTCGGCATAGCT.........................................................................	21	2	29.50	1.50	0.00	0.50	23.00	4.50
.................................TGGTAAGATGTCGGCATAGCTGA.......................................................................	23	2	28.00	13.50	4.00	8.00	1.50	1.00
.................................TGGCAAGATGCCGGCATAGCTG........................................................................	22	2	27.50	10.50	5.50	1.50	8.50	1.50
.................................TGGCAAGATGTCGGCATAGCCG........................................................................	22	2	26.50	5.50	5.00	2.50	10.50	3.00
.................................TGGCAAGATGGCGGCATAGCT.........................................................................	21	2	26.00	5.00	16.50	1.00	2.50	1.00
................................TTGGCAAGATGTCGGAATAGC..........................................................................	21	2	26.00	11.00	0.00	0.00	14.00	1.00
.................................TGGCAAGATGTCGGCATAGA..........................................................................	20	2	25.50	17.50	3.00	0.00	2.50	2.50
......................................AGATGTCGGCATAGCTGA.......................................................................	18	2	25.00	0.50	0.00	0.50	17.50	6.50
.................................TGGCAAGATGTCGGAATAG...........................................................................	19	2	24.50	20.50	1.00	0.00	3.00	0.00
.................................TGGCAAGATGTCAGCATAGCTG........................................................................	22	2	24.50	8.00	3.50	2.50	8.00	2.50
..................................GGCAAGATGTCGGCATAGCT.........................................................................	20	2	24.00	4.50	1.00	0.00	16.50	2.00
.................................AGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	23.50	10.50	0.50	10.50	1.00	1.00
................................CTGGCAAGATGTCGGCATAGCTG........................................................................	23	2	23.00	16.50	2.00	2.00	2.50	0.00
.................................TGGCAAGATGGCGGCATAGCTG........................................................................	22	2	23.00	5.00	9.50	2.50	3.00	3.00
.................................TGGCAAGATGTCGGCATAGCTC........................................................................	22	2	22.50	8.50	6.50	1.00	4.50	2.00
.................................TGGCAAGATGTCGGCATAGCAGA.......................................................................	23	2	22.00	19.50	0.00	2.00	0.50	0.00

droMoj3 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_6496:11065442-11065572 +

64.86

CGATC---------------GTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC CTATATTTATAAATATTTCGGTTTATCGCATCTATTGTTGAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGCA-TTGCATAGCGCTATGCTGCATCTAGTCAGTTATTCAATGGAACAGTCAACA-----	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...........................................TGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	42275.00	27453.00	1451.50	1277.00	12093.50
...........................................TGGCAAGATGTCGGCATAGCTG........................................................................	22	2	5756.50	3704.00	808.50	761.50	482.50
...........................................TGGCAAGATGTCGGCATAGCT.........................................................................	21	2	5023.50	3353.50	884.00	752.00	34.00
...........................................TGGCAAGATGTCGGAATAGCTGA.......................................................................	23	2	999.50	879.50	9.50	10.00	100.50
...........................................TGGCAAGATGTCGGAATAGCT.........................................................................	21	2	908.00	869.00	21.00	17.50	0.50
...........................................TGGCAAGATGTCGGCATAGCTGAT......................................................................	24	2	635.50	488.00	45.50	42.00	60.00
...........................................TGGCAAGATGTCGGCATAGCTT........................................................................	22	2	448.00	263.50	92.50	91.00	1.00
...........................................TGGCAAGATGTCGGCATAGCTGT.......................................................................	23	2	414.00	269.50	55.00	44.50	45.00
...........................................TGGCAAGATGTCGGCATAGC..........................................................................	20	2	410.50	298.50	50.50	54.00	7.50
.........................................................................................CGCTATGCTGCATCTAGTCAGT..........................	22	1	720.00	22.00	28.00	24.00	646.00
...........................................TGGCAAGATGTCGGCATAGCTGAA......................................................................	24	2	335.50	245.50	37.00	22.00	31.00
...........................................TGGCAAGATGTCGGAATAGCTG........................................................................	22	2	309.00	284.50	6.00	8.00	10.50
...........................................TGGCAAGATGTCGGAATAGC..........................................................................	20	2	242.50	235.00	5.00	2.50	0.00
...........................................TGGCAAGATGTCGGCATAG...........................................................................	19	2	196.50	117.00	38.50	38.00	3.00
...........................................TGGCAAGATGTCGGCATAGCTGC.......................................................................	23	2	104.50	6.00	21.00	11.00	66.50
...........................................TGGCAAGATGTCGGCATAGCTGG.......................................................................	23	2	91.50	16.50	5.50	3.50	66.00
...........................................TGGCAAGATGTCGGCATAGCTGACG.....................................................................	25	1	149.00	108.00	6.00	4.00	31.00
...........................................TGGCAAGATGTCGGCATCGCTGA.......................................................................	23	2	69.00	2.00	2.00	9.00	56.00
...........................................TGGCAAGATGTCGGCATAGCTGACGTT...................................................................	27	1	135.00	47.00	1.00	0.00	87.00
...........................................TGGCAAGATGTCTGCATAGCTGA.......................................................................	23	2	65.50	46.00	2.00	4.50	13.00
...........................................TGGCAAGATGTCGGCATAGCTGATT.....................................................................	25	1	129.00	108.00	6.00	3.00	12.00
...........................................TGGCAAGATGTCGGCATAGCTGAAT.....................................................................	25	1	127.00	105.00	6.00	5.00	11.00
...........................................TGGCAAGATGTCGGCATAGCTTA.......................................................................	23	2	60.50	17.00	1.50	12.50	29.50
...........................................TGGCAAGATGTCGGCCTAGCTGA.......................................................................	23	2	59.50	6.00	3.50	13.50	36.50
...........................................TGGCAAGATGCCGGCATAGCTGA.......................................................................	23	2	55.50	24.00	3.50	3.00	25.00
...........................................TTGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	51.50	46.50	0.50	1.00	3.50
...........................................TGGCAAGATGTCGGCATAGCTGTT......................................................................	24	1	100.00	62.00	22.00	15.00	1.00
...........................................TGGCAAGATGTCGGCATAGCTGAAA.....................................................................	25	2	48.50	37.50	5.00	1.00	5.00
...........................................TGGCAAGGTGTCGGCATAGCTGA.......................................................................	23	2	48.00	21.00	3.50	6.00	17.50
...........................................CGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	47.00	24.00	4.00	3.00	16.00
...........................................TGGCAAGATGGCGGCATAGCTGA.......................................................................	23	2	45.00	11.50	11.00	4.50	18.00
...........................................TGGCAAGATGTCGGAATAGCTGAT......................................................................	24	2	42.00	39.00	0.00	0.00	3.00
...........................................TGGCAAGATGTCAGCATAGCTGA.......................................................................	23	2	41.50	17.50	2.00	6.50	15.50
...........................................TGGCAAGATGTCGGCATAGCCGA.......................................................................	23	2	39.50	15.50	3.50	1.50	19.00
............................................GGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	37.50	29.00	1.50	1.50	5.50
..........................................CTGGCAAGATGTCGGCATAGCTGA.......................................................................	24	2	37.00	13.50	1.50	1.00	21.00
...........................................TGGCAAGATGTTGGCATAGCTGA.......................................................................	23	2	37.00	20.50	0.50	2.00	14.00
...........................................TAGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	34.50	15.50	1.00	4.50	13.50
...........................................TGGCAAGATGTCGGAATAGCTT........................................................................	22	2	34.00	31.50	1.50	1.00	0.00
...........................................TGTCAAGATGTCGGCATAGCTGA.......................................................................	23	2	33.00	30.00	0.50	0.50	2.00
...........................................TGGCAAGATGTCGGCACAGCTGA.......................................................................	23	2	32.50	10.50	3.00	1.50	17.50
...........................................TGGCGAGATGTCGGCATAGCTGA.......................................................................	23	2	31.50	15.50	0.50	2.00	13.50
...........................................TGGCAAGATGTAGGCATAGCTGA.......................................................................	23	2	30.50	9.00	0.00	0.50	21.00
...........................................TGGCAAGATGTCGGCATATCTGA.......................................................................	23	2	29.00	15.50	1.00	4.00	8.50
...........................................TGGTAAGATGTCGGCATAGCTGA.......................................................................	23	2	29.00	17.00	1.00	0.50	10.50
...........................................TGACAAGATGTCGGCATAGCTGA.......................................................................	23	2	28.00	15.00	2.00	2.50	8.50
...........................................TGGCAAGATGTCGGCATGGCTGA.......................................................................	23	2	27.50	9.50	2.00	0.50	15.50
...............................................AAGATGTCGGCATAGCTGA.......................................................................	19	2	27.00	13.50	1.50	0.00	12.00
...........................................TGGCAAGATGTCGGCATAGATGA.......................................................................	23	2	26.50	5.50	1.00	2.00	18.00
...........................................TGGCAAGATGTCGTCATAGCTGA.......................................................................	23	2	26.00	21.00	0.50	0.50	4.00
.............................................GCAAGATGTCGGCATAGCTGA.......................................................................	21	2	25.50	21.00	1.00	0.00	3.50
...........................................TGGCAAGATGTCGGTATAGCTGA.......................................................................	23	2	25.00	7.50	3.00	1.00	13.50
...........................................TGGCAAGATTTCGGCATAGCTGA.......................................................................	23	2	25.00	20.50	1.00	1.00	2.50
...........................................TGGCAAGATGTCGACATAGCTGA.......................................................................	23	2	24.50	13.50	2.00	2.00	7.00
...........................................TGGCAAGATGTCGGCATAGCTGAC......................................................................	24	1	48.00	30.00	2.00	6.00	10.00
...........................................TGGCAAGATGTCGGCGTAGCTGA.......................................................................	23	2	24.00	10.00	1.00	1.50	11.50
...........................................TGGAAAGATGTCGGCATAGCTGA.......................................................................	23	2	23.50	13.00	1.00	1.00	8.50
............................................TGCAAGATGTCGGCATAGCTGA.......................................................................	22	2	23.00	22.00	0.00	0.00	1.00
...........................................TGGCAAGATGGCGGCATAGCT.........................................................................	21	2	23.00	0.50	12.00	10.50	0.00
...........................................TGGCAGGATGTCGGCATAGCTGA.......................................................................	23	2	22.50	9.00	1.50	1.50	10.50
...........................................TGGCAAGATGACGGCATAGCTGA.......................................................................	23	2	22.50	6.50	2.50	1.50	12.00
...........................................TGGCAAGATGTCGGCATAGCA.........................................................................	21	2	22.00	12.50	6.00	3.50	0.00
...........................................TGGCAAGATGTCGGCATAGCTTT.......................................................................	23	1	43.00	21.00	12.00	9.00	1.00
...........................................TGGCAAGATGTCGGAATAGCTGT.......................................................................	23	2	21.00	18.00	1.00	1.00	1.00
...........................................TGGCAAGATGTCGGAATAG...........................................................................	19	2	20.50	19.50	1.00	0.00	0.00
...........................................TGGCAAGATGTCGGCATAGCTAA.......................................................................	23	2	20.00	8.50	1.50	1.50	8.50
...........................................TGGCAAGATGTCGGCATAACTGA.......................................................................	23	2	19.00	4.00	2.00	1.50	11.50
...........................................TGGCAAGATGGCGGCATAGCTG........................................................................	22	2	19.00	3.00	8.50	5.50	2.00
...........................................TGGCAAGATGTCGGCATAGCTA........................................................................	22	2	18.00	11.50	2.00	4.00	0.50
...........................................TGGCAAGACGTCGGCATAGCTGA.......................................................................	23	2	17.50	9.50	1.50	2.50	4.00
...........................................TGGCAAGATGTCCGCATAGCTGA.......................................................................	23	2	17.50	6.50	3.00	2.00	6.00
...........................................TGGCAAGATGTCGGCAGAGCTGA.......................................................................	23	2	17.50	0.00	0.00	0.50	17.00
...........................................TGGCAAGATCTCGGCATAGCTGA.......................................................................	23	2	16.50	7.50	2.00	1.00	6.00
...........................................TGGCAAGATGTCTGCATAGCT.........................................................................	21	2	16.00	10.00	0.50	5.50	0.00
...........................................TCGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	15.00	11.50	0.00	1.50	2.00
...........................................AGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	15.00	5.00	3.00	1.00	6.00
...........................................TGGCAAGATGGCGGCATAGCTGT.......................................................................	23	1	29.00	0.00	11.00	11.00	7.00
...........................................TGGCAAGATATCGGCATAGCTGA.......................................................................	23	2	14.50	8.00	0.50	0.50	5.50
...........................................GGGCAAGATGTCGGCATAGCTGA.......................................................................	23	2	14.50	6.50	1.00	1.00	6.00
...........................................TGGCAAGATGTCGGCATACCTGA.......................................................................	23	2	13.50	5.50	2.50	1.00	4.50
...........................................TGGCACGATGTCGGCATAGCTGA.......................................................................	23	2	13.00	0.50	1.00	6.00	5.50
...........................................TGGCAAGATGTCGCCATAGCTGA.......................................................................	23	2	12.50	5.50	3.50	0.50	3.00
...........................................TGGCCAGATGTCGGCATAGCTGA.......................................................................	23	2	12.50	2.00	0.00	1.00	9.50
...........................................TGGCAAGATGTCGGCATAGCTCA.......................................................................	23	2	11.50	2.00	1.00	1.00	7.50
...........................................TGGCAAGATGTCGGCATAGA..........................................................................	20	2	11.50	9.00	1.50	1.00	0.00
...........................................TGGCAAGATGTCGGCATAGTTGA.......................................................................	23	2	11.50	4.00	1.00	1.00	5.50
...........................................TGGCAAGATGTCGGCATCGCT.........................................................................	21	2	11.50	0.50	2.50	8.50	0.00
...........................................TGGCAAGATGTCGGCCTAGCT.........................................................................	21	2	11.00	1.00	3.00	7.00	0.00
...........................................TGGCAAGCTGTCGGCATAGCTGA.......................................................................	23	2	11.00	4.50	0.50	0.50	5.50
.............................................TCAAGATGTCGGCATAGCTGA.......................................................................	21	2	11.00	11.00	0.00	0.00	0.00
...........................................TGGCAAGATGTCGGCATAGCTGACT.....................................................................	25	1	21.00	3.00	0.00	1.00	17.00
.........................................................................................CGCTATGCTGCATCTAGTCCGT..........................	22	1	21.00	0.00	1.00	3.00	17.00
...........................................TGCCAAGATGTCGGCATAGCTGA.......................................................................	23	2	10.50	7.50	0.50	0.00	2.50
...........................................TGGCAAGATGTCGGCATAGCCG........................................................................	22	2	10.00	2.50	4.50	3.00	0.00
...........................................TGGCAAAATGTCGGCATAGCTGA.......................................................................	23	2	10.00	3.00	0.00	1.50	5.50
...........................................TGGCAAGATGTCGGCATTGCTGA.......................................................................	23	2	10.00	2.00	0.00	0.50	7.50
...........................................TGGCAAGATGTCGGCATCGCTG........................................................................	22	2	10.00	0.50	2.50	5.00	2.00
...........................................TGGCAAGATGTCGGCATAGGTGA.......................................................................	23	2	10.00	1.00	0.00	0.00	9.00
...........................................TGGCAATATGTCGGCATAGCTGA.......................................................................	23	2	10.00	8.50	0.00	0.00	1.50
...........................................TGGCAAGATGCCGGCATAGCTG........................................................................	22	2	9.50	6.00	1.00	2.00	0.50
...........................................TGGCAAGATGCCGGCATAGCT.........................................................................	21	2	9.50	4.00	3.50	2.00	0.00

droGri2 - 1 hit found

Lastz ID

Coordinate

Normalized Identity %

Sequence

RNAfold

UNAfold

scaffold_15245:16476618-16476778 -

44.81

CGATCGTATATCAACTCCGTTGGTAAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTTGAAGAGCGCTATGCTGCATCTAGTCAGTTGTTCAATGGAACAGTCAGCGAGATC----------------------------------------- CTCTCGCGATTCTCATCTGTTGGTGAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATCTT-ATAGCGCTATGCTGCATCTAGTCAGTTATTCAATGGAACACTCAAC-ATATCCATACCTGAAATGCTTAGAAACTTGGAGTATCTACGGATTA	Size	Hit Count	Total Norm	V109 Male body
............................TGGCAAGATGTCGGCATAGCTGA................................................................................................................	23	2	12046.00	12046.00
............................TGGCAAGATGTCGGCATAGCTG.................................................................................................................	22	2	1596.00	1596.00
............................TGGCAAGATGTCGGCATAGCT..................................................................................................................	21	2	1138.00	1138.00
............................TGGCAAGATGTCGGCATAGCTGAT...............................................................................................................	24	2	566.50	566.50
............................TGGCAAGATGTCGGAATAGCTGA................................................................................................................	23	2	232.00	232.00
............................TGGCAAGATGTCGGCATAGCTGT................................................................................................................	23	2	206.50	206.50
............................TGGCAAGATGTCGGCATCGCTGA................................................................................................................	23	2	150.00	150.00
............................TGGCAAGATGTCGGCATAGCTGAA...............................................................................................................	24	2	98.00	98.00
............................TGGCAAGATGTCGGCATAGC...................................................................................................................	20	2	97.50	97.50
............................TGGCAAGATGTCGGCATAGCTGC................................................................................................................	23	2	97.50	97.50
............................TGGCAAGATGTCGGAATAGCT..................................................................................................................	21	2	96.50	96.50
............................TGGCAAGATGTCGGCATTGCTGA................................................................................................................	23	2	84.00	84.00
............................TGGCAAGATGTCGGCATAGCTT.................................................................................................................	22	2	72.50	72.50
............................TGGCAAGATGTCGGCATGGCTGA................................................................................................................	23	2	71.00	71.00
............................TGGCAAGATGTCGGAATAGCTG.................................................................................................................	22	2	71.00	71.00
............................TGGCAAGATGTCGGCATAGCTGG................................................................................................................	23	2	70.00	70.00
............................TGGCAAGATGTCGGCATAGCTGACG..............................................................................................................	25	1	101.00	101.00
............................TGGCAAGATGTCGGCATAGCTGATT..............................................................................................................	25	1	97.00	97.00
............................TGGCAAGATGTCGGCATAGCTGACGTT............................................................................................................	27	1	96.00	96.00
............................TGGCACGATGTCGGCATAGCTGA................................................................................................................	23	2	43.00	43.00
............................TGGCAAGACGTCGGCATAGCTGA................................................................................................................	23	2	41.50	41.50
............................TGCCAAGATGTCGGCATAGCTGA................................................................................................................	23	2	38.50	38.50
............................TGGCAACATGTCGGCATAGCTGA................................................................................................................	23	2	30.00	30.00
............................TGGCAAAATGTCGGCATAGCTGA................................................................................................................	23	2	28.00	28.00
............................TGACAAGATGTCGGCATAGCTGA................................................................................................................	23	2	28.00	28.00
............................TGTCAAGATGTCGGCATAGCTGA................................................................................................................	23	2	27.50	27.50
............................TGGCAAGATGTCGGCATAGCTGTT...............................................................................................................	24	1	53.00	53.00
............................TGGCAAGAAGTCGGCATAGCTGA................................................................................................................	23	2	25.50	25.50
............................TGGCAAGATGCCGGCATAGCTGA................................................................................................................	23	2	24.00	24.00
............................TGGCAAGATGTCGGCATAG....................................................................................................................	19	2	21.50	21.50
............................TGGCAGGATGTCGGCATAGCTGA................................................................................................................	23	2	21.50	21.50
............................TGGCATGATGTCGGCATAGCTGA................................................................................................................	23	2	21.00	21.00
............................TGGCAAGATGTCGGCATCGCTG.................................................................................................................	22	2	21.00	21.00
............................TGGCAAGATCTCGGCATAGCTGA................................................................................................................	23	2	20.50	20.50
............................TGGCAAGATGTCGGCATAGCTGAC...............................................................................................................	24	2	19.00	19.00
............................TGGCAAGATGTCGGCATAGCCGA................................................................................................................	23	2	18.00	18.00
...........................CTGGCAAGATGTCGGCATAGCTGA................................................................................................................	24	2	17.50	17.50
............................TGGCCAGATGTCGGCATAGCTGA................................................................................................................	23	2	17.50	17.50
............................TGGCAAGATGTCGGAATAGC...................................................................................................................	20	2	16.50	16.50
............................TGGCAAGATGTCGGCATAGCTGAAA..............................................................................................................	25	2	14.00	14.00
............................TGGCAAGATGTCGGCATAGCTGAAT..............................................................................................................	25	1	28.00	28.00
............................TGGCAAGATGTCGGCATCGCT..................................................................................................................	21	2	14.00	14.00
............................TGGCAAGAGGTCGGCATAGCTGA................................................................................................................	23	2	14.00	14.00
............................TGGCAAGATGTCGGCCTAGCTGA................................................................................................................	23	2	13.50	13.50
............................TGGCAAGATGTCGGCATACCTGA................................................................................................................	23	2	13.50	13.50
............................TGGCAAGATGTCCGCATAGCTGA................................................................................................................	23	2	12.50	12.50
............................TGGCAAGATGTCGGCACAGCTGA................................................................................................................	23	2	12.00	12.00
............................TGGCAAGATGTCGGCATAGCTCA................................................................................................................	23	2	12.00	12.00
............................TGGCAAGATGTCGGCATTGCTG.................................................................................................................	22	2	11.50	11.50
............................TGGCAAGATGTCGGCATAGCTGATTT.............................................................................................................	26	1	22.00	22.00
............................TGGCAAGATGTCGGCATGGCTG.................................................................................................................	22	2	11.00	11.00
............................TGGCAAGATGTAGGCATAGCTGA................................................................................................................	23	2	11.00	11.00
............................TGGCAAGATGTCAGCATAGCTGA................................................................................................................	23	2	10.00	10.00
............................TAGCAAGATGTCGGCATAGCTGA................................................................................................................	23	2	9.50	9.50
............................TCGCAAGATGTCGGCATAGCTGA................................................................................................................	23	2	9.50	9.50
............................CGGCAAGATGTCGGCATAGCTGA................................................................................................................	23	2	9.50	9.50
............................TGGCAAGATGTTGGCATAGCTGA................................................................................................................	23	2	9.50	9.50
..........................................................................CGCTATGCTGCATCTAGTCAGT...................................................................	22	1	18.00	18.00
.............................GGCAAGATGTCGGCATAGCTGA................................................................................................................	22	2	9.00	9.00
............................TGGCAAGATGTCGGAATAGCTGAT...............................................................................................................	24	2	9.00	9.00
............................TGCCAAGATGTCGGCATAGCTG.................................................................................................................	22	2	9.00	9.00
............................TGGAAAGATGTCGGCATAGCTGA................................................................................................................	23	2	8.50	8.50
............................TGGCAAGATATCGGCATAGCTGA................................................................................................................	23	2	8.50	8.50
............................TGGCAAGATGTCGGCATAGATGA................................................................................................................	23	2	8.50	8.50
............................TGGCAAGCTGTCGGCATAGCTGA................................................................................................................	23	2	8.50	8.50
............................TGGCAAGATGTCGCCATAGCTGA................................................................................................................	23	2	8.50	8.50
............................TGGCAAGATGTCGGCATTGCT..................................................................................................................	21	2	8.50	8.50
.............................TGCAAGATGTCGGCATAGCTGA................................................................................................................	22	2	8.00	8.00
............................TGGCAAGATGTCGACATAGCTGA................................................................................................................	23	2	8.00	8.00
............................TGGCAAGGTGTCGGCATAGCTGA................................................................................................................	23	2	8.00	8.00
............................TGGCAAGATGTCGGTATAGCTGA................................................................................................................	23	2	7.50	7.50
............................TGGCAATATGTCGGCATAGCTGA................................................................................................................	23	2	7.00	7.00
............................TGGCAAGATGTCGGCATGGCT..................................................................................................................	21	2	6.50	6.50
............................TGGCAAGATGTCGGAATAGCTGT................................................................................................................	23	2	6.00	6.00
............................TGGCAAGATGTCGGCATATCTGA................................................................................................................	23	2	6.00	6.00
............................TGGCACGATGTCGGCATAGCTG.................................................................................................................	22	2	6.00	6.00
............................TGGCAAGATTTCGGCATAGCTGA................................................................................................................	23	2	6.00	6.00
............................TGGTAAGATGTCGGCATAGCTGA................................................................................................................	23	2	5.50	5.50
............................TGGCAAGATGTCGGCGTAGCTGA................................................................................................................	23	2	5.50	5.50
............................TGGCAAGATGTCGGCATAGCTGCT...............................................................................................................	24	1	11.00	11.00
............................TGGCAAGATGTCGGCATAGTTGA................................................................................................................	23	2	5.50	5.50
............................TGGCAAGATGTCGGCATCGCTGAT...............................................................................................................	24	1	11.00	11.00
............................TTGCAAGATGTCGGCATAGCTGA................................................................................................................	23	2	5.50	5.50
............................TGTCAAGATGTCGGCATAGCTG.................................................................................................................	22	2	5.50	5.50
............................TGGCAAGACGTCGGCATAGCT..................................................................................................................	21	2	5.00	5.00
............................TGGCAAGATGTCTGCATAGCTGA................................................................................................................	23	2	5.00	5.00
............................TGGCGAGATGTCGGCATAGCTGA................................................................................................................	23	2	5.00	5.00
............................TGGCAAGATGTCGGCATAGCTGGT...............................................................................................................	24	1	10.00	10.00
............................TGGCAACATGTCGGCATAGCTG.................................................................................................................	22	2	5.00	5.00
............................TGGCAAGATGTCGGAATAGCTGAA...............................................................................................................	24	2	4.50	4.50
............................TGGCAAGATGTCGTCATAGCTGA................................................................................................................	23	2	4.50	4.50
..............................TCAAGATGTCGGCATAGCTGA................................................................................................................	21	2	4.50	4.50
............................TGGCAAGACGTCGGCATAGCTG.................................................................................................................	22	2	4.50	4.50
............................TGGCAAGATGTCGGCATAGCCG.................................................................................................................	22	2	4.50	4.50
............................TGACAAGATGTCGGCATAGCT..................................................................................................................	21	2	4.50	4.50
............................TGACAAGATGTCGGCATAGCTG.................................................................................................................	22	2	4.00	4.00
............................TGCCAAGATGTCGGCATAGCT..................................................................................................................	21	2	4.00	4.00
............................TGGCAAGATGTCGGCATAGCTTA................................................................................................................	23	2	4.00	4.00
............................TGGCAAGATGTCGGCATGGCTGAT...............................................................................................................	24	1	8.00	8.00
............................TGGCAAGATxTCGGCATAGCTGA................................................................................................................	22	2	4.00	4.00
............................TGGCAAGATGTCGGCATAGCTA.................................................................................................................	22	2	3.50	3.50

Generated: 04/20/2012 at 05:36:50 EDT