dme-mir-31a- 12- and 20-way alignments

dme-mir-31a	chr2R:13671300-13671391 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 13671356-13671378
   star strand at position 13671311-13671332
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:13671285-13671406 -	CG--ATCGTATATC---AACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C
droSim1	chr2R:12409842-12409963 -	CG--ATCGTATAGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C
droSec1	super_1:11168758-11168879 -	CG--ATCGTATAGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C
droYak2	chr2R:15512007-15512128 +	CG--ATCGTATAGC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACACTCAGC------------GAGAT-------C
droEre2	scaffold_4845:7899182-7899303 -	CG--ATCGTATAGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGCTTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C
droAna3	scaffold_13266:10515593-10515717 +	CG--ATCATATAGCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGAATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAAC------------AAGAT-------C
dp4	chr3:16483204-16483318 -	CG--------TACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAAC-------------AGAT-------C
droPer1	super_4:278992-279106 +	CG--------TACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAAC-------------AGAT-------C
droWil1	scaffold_180700:4557858-4557981 -	CATCATCAT-TATC-----ATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAAT--------ATTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAATAGAGCAATCGAC------------AATATTATCTAAC
droVir3	scaffold_12875:16937652-16937768 -	CG---TCGCCTCGC-----ATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAATCAAC------------AAAA---------
droMoj3	scaffold_6496:11065460-11065572 +	CG--GT-TTAT--C---GCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGCAT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAAC---------------AT-------C
droGri2	scaffold_15245:16476647-16476772 -	CG--ATT------C---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATC---TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACACTCAACATATCCATACCTGAAAT-------C

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:13671285-13671406 -	NA	CGATC---------------GTATA-TC---AACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droSim1	chr2R:12409842-12409963 -	1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droSec1	super_1:11168758-11168879 -	1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droYak2	chr2R:15512007-15512128 +	2	CGATC---------------GTATA-GC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACACTCAGCGAG---ATC------------------------------------------
droEre2	scaffold_4845:7899182-7899303 -	1	CGATC---------------GTATA-GC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGC-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAGCGAG---ATC------------------------------------------
droEug1	scf7180000409672:1435483-1435608 +	24	CGATC---------------GTATACCCCAAAAATCTATTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droBia1	scf7180000301754:2904277-2904401 +	2	CGGTC---------------GTATA-GCCACGCTTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-ATTT--TAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droTak1	scf7180000415313:18623-18747 +	2	CGATC---------------GTATA-GCCCCGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-ACTT--TAGGAACGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCATCAAG---ATC------------------------------------------
droEle1	scf7180000491214:575197-575322 +	3	TGATC---------------GTTAAAGCCTCACATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
droRho1	scf7180000777956:117304-117428 +	2	CGATC---------------GTTTT-AGCCCAAATCAGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGCTCAAT-TGAATAGTCATCGAG---ATC------------------------------------------
droFic1	scf7180000453948:1777290-1777409 +	20	CGATC---------------GTAT------CGAATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGA-TTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACATG---ATC------------------------------------------
droKik1	scf7180000302385:435222-435348 -	1	CGATC---------------ATGGA-TCATGGATTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAGCGAATTTT--GTAGAGCGCTATGCTGCATCTAGTCAGT-TATTCAACAGGAACAGTCAACGAG---ATC------------------------------------------
droAna3	scaffold_13266:10515593-10515725 +	3	CGATC---------------ATATA-GCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATCGAAACTCT----------------------------------
droBip1	scf7180000396428:937261-937384 +	19	CGATC---------------ATATA-GCACAGAATCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGA-ATTT---GAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAAT-GGAACAGTCAACAAG---ATC------------------------------------------
dp4	chr3:16483204-16483318 -	1	CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------
droPer1	super_4:278992-279106 +	2	CG---------------------TA-C---CGCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGA-TCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA-G---ATC------------------------------------------
droWil1	scaffold_180700:4557862-4557981 -	1	CA-TC---------------ATCAT-TA---TCATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAA-------T-A-TTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAAT-AGAGCAATCGACAATATTATC------------------------------------------
droVir3	scaffold_12875:16937652-16937767 -	11	---TC---------------G------CCTCGCATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAATCAACAAA---A--------------------------------------------
droMoj3	scaffold_6496:11065442-11065572 +	2	CTATATTTATAAATATTTCGGTTTA-T---CGCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGC-AT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACAGTCAACA--------------------------------------------------
droGri2	scaffold_15245:16476618-16476778 -	1	CTCTC---------------GCGAT-TC---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGC-ATCT--T-ATAGCGCTATGCTGCATCTAGTCAGT-TATTCAAT-GGAACACTCAACA-T---ATCCATAC-CTGAAATGCTTAGAAACTTGGAGTATCTACGGATTA

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

CG--ATCGTATATC---AACTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C

Size

Hit Count

Total Norm

droSim1

CG--ATCGTATAGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	53758.50	8327.50	11969.50	14201.00	19260.50
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	34561.00	574.50	12172.00	12477.50	9337.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	16931.50	42.50	8387.00	7612.00	890.00
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	9625.00	40.00	1872.00	2982.50	4730.50
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	8436.50	2.50	3559.50	3078.00	1796.50
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	5812.50	24.50	80.00	4444.50	1263.50
..................................TGGCAAGATGTCGGCATAGCC...............................................................................................	21	2	1723.50	0.00	955.50	676.00	92.00
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	1668.50	249.50	4.50	297.00	1117.50
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	1378.50	4.50	15.50	775.00	583.50
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	695.50	44.00	310.00	285.00	56.50
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	686.50	40.00	265.00	295.50	86.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	557.50	40.50	161.00	268.00	88.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	483.00	2.00	125.00	70.00	286.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	454.50	45.00	152.00	116.00	141.50
..................................TGGCAAGATGTCGGAATAGCC...............................................................................................	21	2	449.50	0.00	6.00	327.50	116.00
..................................TGGCAAGATGTCGGCATAGCG...............................................................................................	21	2	392.50	0.00	146.50	221.00	25.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	385.00	2.00	184.00	191.00	8.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	351.50	2.00	136.50	169.00	44.00
..................................TGGCAAGATGTCGGCATAGCGG..............................................................................................	22	2	345.50	1.00	93.50	145.50	105.50
..................................TGGCAAGATGTCGGAATAGCTGG.............................................................................................	23	2	313.00	1.50	2.00	63.00	246.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	259.50	3.50	58.50	32.00	165.50
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	209.00	1.50	53.00	26.50	128.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	177.50	0.50	52.00	22.00	103.00
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	341.00	1.00	190.00	141.00	9.00
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	163.00	0.50	86.00	76.00	0.50
..................................TGGCAAGATGTCGGAATAGCTGAA............................................................................................	24	2	161.00	2.00	1.00	21.00	137.00
..................................TGTCAAGATGTCGGCATAGCT...............................................................................................	21	2	156.50	0.00	108.50	37.50	10.50
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	145.00	2.50	37.00	25.00	80.50
..................................TGGCAAGATGTCGGAATAGCG...............................................................................................	21	2	142.00	0.00	1.00	108.00	33.00
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	125.50	2.50	28.00	13.50	81.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	233.00	194.00	11.00	4.00	24.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	106.00	34.50	3.50	31.00	37.00
..................................TTGCAAGATGTCGGCATAGCTGG.............................................................................................	23	1	207.00	0.00	48.00	23.00	136.00
..................................TTGCAAGATGTCGGCATAGCT...............................................................................................	21	2	102.50	0.00	65.00	28.00	9.50
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	98.00	9.00	23.50	19.00	46.50
..................................TGCCAAGATGTCGGCATAGCT...............................................................................................	21	2	94.50	0.00	67.50	19.00	8.00
.....................................CAAGATGTCGGCATAGCTGA.............................................................................................	20	2	88.50	0.00	25.50	21.50	41.50
..................................TGGCAAGATGTCGGAATAGCA...............................................................................................	21	2	88.50	0.00	0.00	88.00	0.50
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	164.00	0.00	79.00	77.00	8.00
.......................................AGATGTCGGCATAGCTGA.............................................................................................	18	2	81.00	0.00	21.50	20.50	39.00
..................................TGGCAAGATTTCGGCATAGCTG..............................................................................................	22	2	78.50	0.00	23.50	20.00	35.00
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	147.00	1.00	75.00	55.00	16.00
.................................TTGGCAAGATGTCGGAATAGCT...............................................................................................	22	2	72.50	1.00	1.00	51.50	19.00
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	72.50	1.50	1.50	18.00	51.50
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	70.00	25.50	12.50	17.50	14.50
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	65.50	4.50	20.00	10.50	30.50
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	65.00	7.00	18.50	11.50	28.00
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	63.00	3.00	19.00	33.00	8.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	62.00	1.00	28.50	28.50	4.00
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	61.50	24.00	11.50	10.50	15.50
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	58.00	0.00	1.00	54.00	3.00
..................................TCGCAAGATGTCGGCATAGCTGG.............................................................................................	23	1	110.00	0.00	20.00	16.00	74.00
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	54.50	18.00	7.00	13.00	16.50
..................................TCGCAAGATGTCGGCATAGCT...............................................................................................	21	2	54.00	0.00	31.00	17.50	5.50
..................................TGTCAAGATGTCGGCATAGCTGG.............................................................................................	23	1	102.00	0.00	27.00	6.00	69.00
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	1	101.00	13.00	38.00	33.00	17.00
..................................TGGCAAGATGTCGGCATAGCTGTA............................................................................................	24	1	95.00	0.00	51.00	36.00	8.00
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	47.00	13.50	4.50	14.50	14.50
....................................TCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	46.50	0.00	8.50	9.50	28.50
...................................GGCAAGATGTCGGCATAGCTG..............................................................................................	21	2	43.00	0.50	18.00	12.00	12.50
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	41.50	5.00	8.50	6.00	22.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	41.50	14.00	6.00	10.50	11.00
..................................TGTCAAGATGTCGGCATAGCTG..............................................................................................	22	2	39.50	0.00	14.50	8.50	16.50
..................................TGGCAAGATGGCGGCATAGCTG..............................................................................................	22	2	39.00	1.50	17.50	10.50	9.50
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	39.00	2.50	10.50	11.50	14.50
..................................TGGCAAGATGTCGGCATA..................................................................................................	18	2	37.50	0.00	18.50	19.00	0.00
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	36.50	8.00	7.00	6.00	15.50
....................................GCAAGATGTCGGCATAGCT...............................................................................................	19	2	35.00	0.00	20.50	11.50	3.00
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	35.00	32.50	0.00	1.00	1.50
...................................TGCAAGATGTCGGCATAGCTGG.............................................................................................	22	1	68.00	0.00	12.00	7.00	49.00
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	33.50	10.00	4.00	9.00	10.50
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	33.00	31.50	0.50	0.00	1.00
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	33.00	6.00	10.00	4.50	12.50
...................................TGCAAGATGTCGGCATAGCT...............................................................................................	20	2	33.00	0.00	24.00	7.50	1.50
..................................TGGCAAGATGTCGGAATACCTGA.............................................................................................	23	2	33.00	0.00	0.00	3.00	30.00
..................................TGGCAAGATGTCGGAATAGCTGAC............................................................................................	24	2	32.50	0.50	0.00	5.00	27.00
......................................AAGATGTCGGCATAGCTG..............................................................................................	18	2	32.00	0.00	10.50	6.50	15.00
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	31.00	14.50	3.00	8.00	5.50
..................................TGGCAAGATGTCGGCATAGA................................................................................................	20	2	30.50	0.00	15.50	14.50	0.50
..................................TGGCAAGATGTCGGCATATCT...............................................................................................	21	2	30.50	0.00	19.00	10.50	1.00
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	30.50	8.50	4.50	7.00	10.50
..................................CGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	29.50	0.00	12.00	10.50	7.00
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	29.00	6.50	7.00	5.00	10.50
..................................TGGCAAGATCTCGGCATAGCTG..............................................................................................	22	2	29.00	0.00	11.00	6.00	12.00
..................................TGGCAAGGTGTCGGCATAGCTG..............................................................................................	22	2	29.00	2.00	9.00	9.00	9.00
..................................TGGCAAGATGTCGGAATAG.................................................................................................	19	2	28.50	1.00	1.00	15.00	11.50
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	28.00	8.50	4.50	8.50	6.50
....................................GCAAGATGTCGGCATAGCTGG.............................................................................................	21	2	27.50	0.50	5.50	4.00	17.50
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	27.50	10.00	4.50	4.50	8.50
..................................TGGCAAGATGCCGGCATAGCTG..............................................................................................	22	2	26.00	1.50	7.50	10.00	7.00
..................................TGGCAAGATGTCGGAATATCTGA.............................................................................................	23	2	26.00	0.50	0.00	3.00	22.50
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	26.00	11.50	3.00	7.00	4.50
..................................TTGCAAGATGTCGGCATAGC................................................................................................	20	2	26.00	0.00	15.00	4.00	7.00
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	26.00	0.50	8.00	9.00	8.50
..................................TGCCAAGATGTCGGCATAGCTGG.............................................................................................	23	1	51.00	0.00	8.00	8.00	35.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	25.00	3.50	6.00	2.00	13.50
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	25.00	1.50	6.50	8.50	8.50
..................................TTGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	24.00	0.00	10.50	6.50	7.00
...................................GGCAAGATGTCGGCATAGCT...............................................................................................	20	2	24.00	0.00	14.50	9.50	0.00
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	24.00	2.50	7.00	3.50	11.00
..................................TGGCAAGATGGCGGCATAGCT...............................................................................................	21	2	23.50	0.00	11.50	11.50	0.50

droSec1

CG--ATCGTATAGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	83406.00	27325.50	43475.50	12605.00
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	8971.50	4429.00	2449.50	2093.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	5565.50	3511.00	433.50	1621.00
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	4341.00	1980.00	2252.00	109.00
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	3297.00	2795.50	358.50	143.00
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	1880.50	964.00	424.50	492.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	1684.00	1143.50	467.50	73.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	767.50	398.00	207.00	162.50
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	764.50	483.00	59.50	222.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	758.00	522.00	1.50	234.50
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	574.50	523.00	31.00	20.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	1024.00	122.00	684.00	218.00
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	439.50	233.50	64.50	141.50
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	294.50	229.50	54.00	11.00
..................................TGGCAAGATGTCGGCATAGCTGACGTT.........................................................................................	27	1	530.00	60.00	395.00	75.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	240.00	111.50	40.00	88.50
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	235.00	200.00	18.50	16.50
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	178.00	58.00	103.50	16.50
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	328.00	202.00	9.00	117.00
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	162.00	145.50	10.50	6.00
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	155.00	10.50	137.00	7.50
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	137.00	133.00	1.00	3.00
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	266.00	138.00	30.00	98.00
..................................TGGCAAGATGTCGGCATAGCTGACG...........................................................................................	25	1	255.00	66.00	136.00	53.00
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	123.50	41.50	65.50	16.50
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	1	242.00	56.00	130.00	56.00
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	121.00	26.00	77.00	18.00
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	114.50	23.50	74.00	17.00
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	110.50	13.00	88.50	9.00
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	109.00	23.00	72.50	13.50
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	107.50	32.50	66.50	8.50
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	106.50	30.00	63.50	13.00
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	97.00	54.50	19.00	23.50
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	95.50	35.00	39.00	21.50
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	90.50	23.50	59.00	8.00
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	88.00	10.50	67.50	10.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	88.00	23.50	46.50	18.00
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	86.50	29.00	48.50	9.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	84.00	17.50	56.00	10.50
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	82.50	23.00	44.50	15.00
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	80.50	17.50	54.50	8.50
..................................TGGCATGATGTCGGCATAGCTGA.............................................................................................	23	2	76.50	4.00	68.00	4.50
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	74.50	24.50	40.00	10.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	72.50	17.50	34.50	20.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	72.00	24.00	35.50	12.50
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	66.50	23.00	35.50	8.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	66.00	19.50	35.50	11.00
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	64.50	39.50	23.00	2.00
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	61.00	35.50	1.00	24.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	61.00	15.50	38.50	7.00
..................................TGGCAAGATGTCGGAATAGCTGAA............................................................................................	24	2	60.50	13.50	44.00	3.00
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	60.00	19.50	31.50	9.00
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	113.00	54.00	15.00	44.00
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	54.50	12.00	34.00	8.50
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	53.00	12.00	35.00	6.00
..................................TGGCCAGATGTCGGCATAGCTGA.............................................................................................	23	2	52.00	26.50	20.50	5.00
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	51.50	14.00	31.50	6.00
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	51.00	39.50	10.00	1.50
..................................TGGCAAGATGTCGGAATAG.................................................................................................	19	2	48.50	40.50	6.50	1.50
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	48.00	10.50	22.00	15.50
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	46.50	11.00	29.00	6.50
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	46.00	12.00	16.50	17.50
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	45.50	12.50	26.50	6.50
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	44.50	14.00	11.50	19.00
..................................TGGCAAGATGTCGGCATAGCTGACGT..........................................................................................	26	1	88.00	4.00	65.00	19.00
..................................TGGCAAGATGTCGGCATACCTG..............................................................................................	22	2	44.00	35.50	5.00	3.50
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	44.00	9.50	29.50	5.00
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	43.50	19.50	17.00	7.00
..................................TGGCAAAATGTCGGCATAGCTGA.............................................................................................	23	2	42.00	9.00	14.50	18.50
..................................TGGCAAGATGTCGGCATTGCTGA.............................................................................................	23	2	41.50	3.00	35.00	3.50
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	41.00	9.00	26.00	6.00
..................................TGGCAAGATGTCGGCATAACTG..............................................................................................	22	2	41.00	38.00	1.00	2.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	40.50	17.50	18.50	4.50
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	39.50	14.00	9.00	16.50
..................................TGGCAAGATGTCGGCATAGTTGA.............................................................................................	23	2	39.50	6.00	31.00	2.50
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	39.00	12.50	12.50	14.00
..................................TGGCAAGATGTCGGCATAACT...............................................................................................	21	2	38.50	36.50	0.00	2.00
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	37.50	5.50	21.00	11.00
....................................TCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	37.00	9.00	24.00	4.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	36.00	19.00	8.00	9.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	35.00	14.50	12.00	8.50
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	34.50	4.00	18.50	12.00
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	34.00	11.50	17.00	5.50
..................................TGGCAAGCTGTCGGCATAGCTGA.............................................................................................	23	2	33.50	10.00	16.50	7.00
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	33.00	10.00	17.00	6.00
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	32.50	15.00	15.50	2.00
..................................TGGCAAGATGTCGGCATATCTG..............................................................................................	22	2	32.00	30.00	1.00	1.00
.................................CTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	31.50	14.00	6.00	11.50
..................................TGGCTAGATGTCGGCATAGCTGA.............................................................................................	23	2	30.50	4.00	26.00	0.50
..................................TGGCAAGATxTCGGCATAGCTGA.............................................................................................	22	2	30.00	8.00	18.50	3.50
..................................TGGCAAGATGTCGGAATACCTGA.............................................................................................	23	2	30.00	25.50	4.50	0.00
..................................TGGCAACATGTCGGCATAGCTGA.............................................................................................	23	2	28.50	13.50	11.50	3.50
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	28.00	5.50	14.00	8.50
..................................TGGCxAGATGTCGGCATAGCTGA.............................................................................................	22	2	28.00	2.00	25.00	1.00
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	27.50	11.00	10.50	6.00
..................................TGGCAAGATGTCGGCATACCT...............................................................................................	21	2	27.50	27.00	0.00	0.50
..................................TGGCAAGATGTCGGAATACCT...............................................................................................	21	2	26.50	26.50	0.00	0.00
..................................TGGCAAGAAGTCGGCATAGCTGA.............................................................................................	23	2	26.50	1.50	18.50	6.50
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	53.00	34.00	2.00	17.00
..................................TGGCAAGATGTCGGCTTAGCTGA.............................................................................................	23	2	26.00	3.50	20.00	2.50
..................................TGGCAAGATGTCGGCATATCT...............................................................................................	21	2	25.00	24.50	0.00	0.50

droYak2

CG--ATCGTATAGC---ACCTCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGATTTT--GAAGATCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACACTCAGC------------GAGAT-------C	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	32062.00	10454.00	1737.00	13154.00	2345.00	4372.00
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	9469.00	489.50	962.00	2296.00	1195.50	4526.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	5987.00	40.00	805.50	1816.00	1056.50	2269.00
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	1521.50	190.00	17.00	1255.50	36.00	23.00
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	1507.50	10.50	53.50	228.50	82.00	1133.00
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	1433.50	8.00	8.00	1079.00	26.00	312.50
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	896.50	28.50	2.50	8.00	10.00	847.50
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	819.00	58.00	50.00	482.50	97.00	131.50
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	649.50	23.50	16.00	573.00	33.00	4.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	626.00	0.50	119.00	270.50	143.00	93.00
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	625.50	28.50	63.00	218.00	128.50	187.50
..................................TGGCAAGATGTCGGCATAGCC...............................................................................................	21	2	299.50	0.50	1.50	3.00	1.00	293.50
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	291.00	28.50	25.50	152.00	49.50	35.50
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	227.50	1.50	1.50	180.50	1.50	42.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	413.00	310.00	24.00	29.00	49.00	1.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	183.50	46.50	8.00	7.00	88.50	33.50
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	148.00	1.50	29.50	51.00	38.50	27.50
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	228.00	1.00	19.00	50.00	26.00	132.00
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	76.00	0.00	0.50	67.00	1.00	7.50
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	125.00	5.00	8.00	62.00	7.00	43.00
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	56.50	33.50	4.50	1.00	17.50	0.00
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	56.50	16.50	9.50	0.00	28.50	2.00
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	54.50	27.00	6.00	4.50	17.00	0.00
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	52.50	17.50	2.50	21.50	9.00	2.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	52.50	16.00	21.50	4.50	10.50	0.00
..................................TGGCAAGATGTCGGCATAGCG...............................................................................................	21	2	51.50	0.00	0.50	0.00	2.00	49.00
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	102.00	1.00	28.00	32.00	38.00	3.00
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	51.00	1.50	2.00	44.50	2.50	0.50
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	47.00	1.00	1.00	14.00	0.50	30.50
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	46.00	17.00	2.50	20.00	6.00	0.50
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	43.50	13.00	2.00	13.50	8.50	6.50
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	42.50	14.50	3.50	14.50	6.50	3.50
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	1	79.00	16.00	8.00	27.00	14.00	14.00
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	36.00	3.50	0.50	11.00	0.50	20.50
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	35.50	5.00	2.00	22.00	1.00	5.50
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	35.00	0.50	0.00	31.50	0.00	3.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	34.50	13.50	5.00	10.50	4.50	1.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	34.00	0.50	1.00	7.00	2.50	23.00
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	33.50	12.50	2.00	11.50	4.00	3.50
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	32.50	10.00	2.00	15.00	2.50	3.00
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	32.50	4.00	2.50	16.00	5.50	4.50
..................................TGGCAAGCTGTCGGCATAGCTGA.............................................................................................	23	2	32.00	7.50	0.50	20.50	3.50	0.00
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	32.00	14.50	2.50	12.00	1.00	2.00
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	31.50	7.50	0.50	12.50	2.00	9.00
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	31.50	16.00	2.50	10.50	1.50	1.00
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	31.00	0.50	1.50	13.50	0.00	15.50
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	30.00	11.00	8.50	4.50	5.00	1.00
..................................TGGCAAGATGTCGGAATAGCC...............................................................................................	21	2	29.00	0.00	0.00	0.50	0.00	28.50
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	29.00	3.00	0.00	19.50	0.50	6.00
..................................TGTCAAGATGTCGGCATAGCT...............................................................................................	21	2	28.00	0.00	0.50	2.00	1.00	24.50
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	28.00	4.50	4.00	10.00	5.50	4.00
..................................TGGCAAGATGTCGGCATAGCGG..............................................................................................	22	2	27.50	0.50	2.00	0.50	3.50	21.00
..................................TGGCAAGATGGCGGCATAGCTG..............................................................................................	22	2	26.50	1.00	5.00	0.50	18.00	2.00
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	25.50	0.00	6.50	8.00	5.50	5.50
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	24.50	10.50	2.00	4.00	4.00	4.00
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	49.00	2.00	1.00	17.00	3.00	26.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	24.00	0.00	0.00	8.00	0.00	16.00
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	24.00	6.00	2.50	5.50	2.50	7.50
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	23.50	10.50	1.50	8.00	2.00	1.50
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	23.50	4.00	2.50	7.50	7.00	2.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	22.00	12.00	1.00	6.00	3.00	0.00
..................................TTGCAAGATGTCGGCATAGCT...............................................................................................	21	2	22.00	0.00	0.00	4.00	0.50	17.50
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	22.00	9.50	5.00	4.50	0.50	2.50
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	22.00	10.50	2.00	5.50	1.00	3.00
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	22.00	13.50	2.00	1.50	4.00	1.00
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	21.00	15.00	0.50	2.00	1.50	2.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	20.50	0.50	2.50	8.50	3.50	5.50
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	19.00	5.00	2.00	3.00	1.50	7.50
..................................TGGCAAGATGGCGGCATAGCT...............................................................................................	21	2	19.00	0.00	5.00	0.00	13.50	0.50
.................................CTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	18.00	1.50	3.00	6.00	5.50	2.00
.................................TTGGCAAGATGTCGGAATAGCT...............................................................................................	22	2	18.00	1.00	0.00	8.00	0.00	9.00
..................................TGGCAAGATGTCGGCATATCTG..............................................................................................	22	2	17.50	1.00	6.00	1.00	7.00	2.50
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	17.50	2.00	0.00	8.00	3.50	4.00
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	17.50	8.00	1.50	3.00	0.00	5.00
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	17.00	5.50	2.00	4.00	2.00	3.50
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	16.50	1.00	1.50	11.00	2.00	1.00
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	16.50	6.50	1.00	5.00	1.50	2.50
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	16.50	3.50	1.00	5.00	6.00	1.00
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	16.50	6.00	1.00	7.00	2.00	0.50
..................................TGGCAAGATGTCGGAATAGCTGAA............................................................................................	24	2	16.50	1.50	1.50	10.50	0.50	2.50
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	16.00	6.50	1.50	6.00	2.00	0.00
..................................TGGCAAGATGTCGGAATAG.................................................................................................	19	2	15.50	0.00	0.00	15.50	0.00	0.00
..................................TGGCAAGATGCCGGCATAGCTG..............................................................................................	22	2	15.00	1.50	1.00	4.50	4.00	4.00
.....................................CAAGATGTCGGCATAGCTGA.............................................................................................	20	2	15.00	1.50	0.00	4.50	0.00	9.00
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	15.00	6.50	0.00	7.00	0.50	1.00
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	15.00	5.50	0.50	6.00	2.50	0.50
..................................TGGCCAGATGTCGGCATAGCTGA.............................................................................................	23	2	15.00	7.00	2.00	3.00	3.00	0.00
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	15.00	8.50	2.50	3.50	0.50	0.00
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	14.50	6.00	1.00	5.00	2.00	0.50
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	14.00	3.50	0.00	8.00	2.00	0.50
..................................TGGCAAGATGTCTGCATAGCTG..............................................................................................	22	2	14.00	0.50	3.00	1.50	3.50	5.50
..................................TGCCAAGATGTCGGCATAGCT...............................................................................................	21	2	14.00	0.00	0.50	1.00	0.00	12.50
..................................CGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	13.50	1.00	0.50	4.00	3.00	5.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	13.50	5.00	0.50	4.50	1.00	2.50
..................................TGGCAAGATGTCGGCATCGCTG..............................................................................................	22	2	13.00	2.00	2.50	0.00	8.00	0.50
..................................TGGCAAGATGTCTGCATAGCT...............................................................................................	21	2	13.00	0.00	3.50	0.50	8.00	1.00
..................................TGGCAAGATTTCGGCATAGCTG..............................................................................................	22	2	13.00	0.00	1.50	3.00	0.00	8.50
..................................TGGCAAGATGTCGGCATAGCTGTA............................................................................................	24	1	25.00	1.00	3.00	3.00	2.00	16.00
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	12.50	1.50	1.50	3.50	3.50	2.50
..................................TGGCAAGATGTCGGCAGAGCTGA.............................................................................................	23	2	12.50	8.50	0.00	1.00	3.00	0.00
..................................TGGCAAGGTGTCGGCATAGCTG..............................................................................................	22	2	12.50	1.50	1.00	2.50	4.50	3.00

droEre2

CG--ATCGTATAGC---ACCTCCGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGAAAAGCGCTTTT--AAAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAGC------------GAGAT-------C	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	32100.00	3732.00	1156.50	12112.00	15099.50
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	6455.00	261.00	1124.00	609.00	4461.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	2403.50	27.00	626.50	109.50	1640.50
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	627.00	13.50	33.50	98.50	481.50
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	615.50	14.50	55.00	69.50	476.50
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	476.00	105.50	4.00	245.00	121.50
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	472.00	66.00	27.50	156.50	222.00
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	780.00	211.00	75.00	113.00	381.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	343.50	4.00	63.00	13.00	263.50
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	333.00	22.00	28.00	99.50	183.50
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	302.00	10.50	26.00	42.50	223.00
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	292.50	28.50	1.50	71.50	191.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	207.00	16.50	31.50	34.00	125.00
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	192.00	23.50	2.00	74.00	92.50
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	187.00	9.50	0.00	23.00	154.50
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	186.50	17.50	1.50	45.50	122.00
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	163.50	4.00	15.50	14.00	130.00
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	152.00	6.50	52.00	11.50	82.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	145.00	10.00	1.00	28.50	105.50
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	136.00	17.00	3.00	44.00	72.00
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	128.50	4.00	0.00	3.50	121.00
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	107.50	11.50	1.00	31.00	64.00
..................................TGGCAATATGTCGGCATAGCTGA.............................................................................................	23	2	106.50	11.50	0.00	30.00	65.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	99.50	2.00	19.50	3.50	74.50
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	96.50	2.00	0.50	5.00	89.00
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	155.00	1.00	12.00	12.00	130.00
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	75.00	14.00	1.50	50.50	9.00
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	72.00	3.50	1.00	15.00	52.50
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	71.50	12.50	4.00	40.50	14.50
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	70.50	5.50	2.50	33.50	29.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	66.00	6.50	3.00	33.50	23.00
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	65.50	12.00	2.00	34.50	17.00
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	62.00	10.00	1.50	43.50	7.00
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	62.00	11.00	6.50	33.50	11.00
..................................TGGCAAGATGTCTGCATAGCTG..............................................................................................	22	2	59.50	2.00	1.50	3.00	53.00
..................................TTGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	58.00	0.50	1.00	1.50	55.00
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	110.00	0.00	3.00	25.00	82.00
..................................TGGCAAGATGTCGGCATAGCTGACGTT.........................................................................................	27	1	107.00	0.00	0.00	106.00	1.00
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	1	104.00	12.00	5.00	25.00	62.00
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	51.00	4.50	1.50	18.00	27.00
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	50.50	10.50	0.50	30.50	9.00
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	49.50	6.00	1.00	9.00	33.50
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	46.50	8.00	1.50	22.50	14.50
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	46.00	7.00	2.00	20.00	17.00
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	46.00	4.50	1.50	21.00	19.00
..................................TGGCAAGATGTCGGCATATCTG..............................................................................................	22	2	44.50	2.50	5.50	5.00	31.50
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	43.00	10.50	0.00	22.50	10.00
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	42.00	12.50	1.00	22.50	6.00
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	42.00	5.50	1.50	17.50	17.50
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	39.50	4.50	2.50	20.50	12.00
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	39.00	8.00	0.00	22.00	9.00
..................................TGGCAAGATGTCGGCATAGCTGACG...........................................................................................	25	1	77.00	6.00	2.00	45.00	24.00
..................................TGGCAAGATGTAGGCATAGCTG..............................................................................................	22	2	37.00	1.00	0.00	1.00	35.00
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	36.00	7.00	1.00	11.50	16.50
..................................TGTCAAGATGTCGGCATAGCTG..............................................................................................	22	2	35.00	1.00	0.50	1.00	32.50
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	34.50	6.00	2.50	15.50	10.50
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	34.00	1.50	0.50	5.50	26.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	33.50	6.50	0.00	19.50	7.50
..................................TGGAAAGATGTCGGCATAGCTG..............................................................................................	22	2	33.50	0.00	0.00	1.00	32.50
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	33.50	3.00	0.00	8.00	22.50
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	32.00	3.50	1.00	18.50	9.00
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	31.50	4.50	1.50	6.00	19.50
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	31.50	4.00	2.50	8.00	17.00
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	30.00	3.50	0.50	23.00	3.00
..................................TGGCAAGATGTCGTCATAGCTG..............................................................................................	22	2	29.00	2.00	1.50	1.50	24.00
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	28.50	4.50	0.50	14.00	9.50
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	57.00	1.00	1.00	12.00	43.00
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	28.50	6.50	0.50	5.00	16.50
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	28.00	3.50	0.50	14.50	9.50
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	27.00	3.00	3.00	15.50	5.50
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	26.50	3.50	1.00	13.00	9.00
..................................TGGCAAGATGTCGGCAGAGCTGA.............................................................................................	23	2	26.50	6.00	2.00	18.00	0.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	26.00	2.50	0.00	9.50	14.00
..................................TTGCAAGATGTCGGCATAGCT...............................................................................................	21	2	25.50	0.50	0.50	0.50	24.00
..................................TGGGAAGATGTCGGCATAGCTGA.............................................................................................	23	2	25.50	2.50	1.50	1.50	20.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	25.00	4.00	1.00	9.00	11.00
..................................TGGCAAGATTTCGGCATAGCTG..............................................................................................	22	2	24.50	1.50	1.00	2.50	19.50
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	23.50	7.50	1.00	10.50	4.50
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	22.50	1.00	2.50	2.50	16.50
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	22.00	1.00	1.50	11.00	8.50
..................................TGGCAAGATGTCGGCATAGCTGACT...........................................................................................	25	1	43.00	2.00	1.00	9.00	31.00
..................................TGGCAAGATGTCTGCATAGCT...............................................................................................	21	2	21.00	0.00	1.00	1.50	18.50
..................................TGGCACGATGTCGGCATAGCTGA.............................................................................................	23	2	19.50	2.50	0.00	11.00	6.00
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	19.00	4.00	0.50	10.50	4.00
..................................TGGCCAGATGTCGGCATAGCTGA.............................................................................................	23	2	18.50	3.00	1.00	6.00	8.50
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	18.00	1.00	0.00	1.50	15.50
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	17.50	0.50	3.50	0.50	13.00
..................................TGGCAAGATGTCGGCATAGGTGA.............................................................................................	23	2	17.50	2.00	0.50	12.50	2.50
..................................TGGCAAGATGTCGGCATATCTTA.............................................................................................	23	1	34.00	13.00	0.00	20.00	1.00
..................................TGGCAAGATGTCGGCATAGCGGA.............................................................................................	23	2	17.00	2.50	1.50	12.50	0.50
..................................TGGCAATATGTCGGCATAGCTG..............................................................................................	22	2	16.50	0.00	0.00	2.00	14.50
.................................CTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	16.50	1.00	1.50	2.00	12.00
..................................TGGCAAGCTGTCGGCATAGCTGA.............................................................................................	23	2	16.50	1.50	0.50	10.00	4.50
..................................TGGCAAGATGTCGGCATAGATG..............................................................................................	22	2	16.00	0.00	1.00	0.00	15.00
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	16.00	0.00	5.50	0.00	10.50
..................................TGGCAAGATGGCGGCATAGCTG..............................................................................................	22	2	15.00	1.00	6.00	2.50	5.50
..................................TGGCAAGATGTCTGCATAGCTTA.............................................................................................	23	1	30.00	10.00	0.00	18.00	2.00
......................................AAGATGTCGGCATAGCTG..............................................................................................	18	2	14.50	0.50	0.00	0.00	14.00
..................................TGGAAAGATGTCGGCATAGCT...............................................................................................	21	2	14.50	0.00	0.00	0.00	14.50
..................................TGGCAAGATGTCGTCATAGCT...............................................................................................	21	2	14.50	0.00	0.50	0.50	13.50
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	28.00	1.00	9.00	1.00	17.00

droAna3

CG--ATCATATAGCCAAGAATCTGTTGTT-AAATTGGCAAGATGTCGGCATAGCTGACGTTGGAAAACGAATTT--TGAGAGCGCTATGCTGCATCTAGTCAGT-TGTTCAATGGAACAGTCAAC------------AAGAT-------C	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	41131.50	27187.00	10159.00	3345.50	440.00
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	7106.50	4575.50	1159.50	1337.00	34.50
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	5193.50	3801.00	549.00	838.50	5.00
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	2512.00	1765.50	576.00	167.50	3.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	1427.00	983.50	238.00	204.50	1.00
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	1313.50	840.50	299.50	171.00	2.50
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	696.50	545.50	76.50	54.50	20.00
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	582.00	535.00	16.50	29.50	1.00
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	447.00	326.00	56.50	63.50	1.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	380.00	222.00	87.50	69.00	1.50
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	723.00	515.00	179.00	28.00	1.00
..................................TGGCAAGATGTCGGCATAGCAGA.............................................................................................	23	2	336.00	272.50	62.50	1.00	0.00
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	330.00	197.00	121.50	8.50	3.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	322.00	272.00	12.00	36.00	2.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	259.00	84.50	173.00	1.00	0.50
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	238.00	143.50	85.50	8.00	1.00
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	234.50	202.00	28.00	4.00	0.50
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	233.50	148.00	80.50	5.00	0.00
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	454.00	275.00	125.00	54.00	0.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	201.50	177.00	18.50	6.00	0.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	177.00	131.00	21.50	24.50	0.00
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	172.50	113.50	53.00	4.50	1.50
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	167.50	130.50	30.50	5.50	1.00
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	287.00	207.00	36.00	42.00	2.00
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	136.50	128.00	2.50	5.50	0.50
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	132.50	94.00	31.50	5.00	2.00
..................................TGGCAAGATGTCGGCATAGCGGA.............................................................................................	23	2	121.50	106.00	6.00	9.00	0.50
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	109.00	83.00	22.50	3.00	0.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	217.00	34.00	83.00	73.00	27.00
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	108.00	88.50	1.00	18.50	0.00
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	106.50	90.00	12.50	3.50	0.50
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	1	212.00	71.00	109.00	32.00	0.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	105.00	54.00	30.00	7.00	14.00
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	100.50	89.50	4.00	5.50	1.50
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	193.00	141.00	46.00	6.00	0.00
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	90.00	71.50	11.50	5.50	1.50
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	86.50	52.00	11.00	23.00	0.50
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	85.00	38.00	1.50	43.50	2.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	81.00	12.00	3.50	59.00	6.50
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	76.50	63.00	3.50	7.50	2.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	72.00	60.50	5.00	5.50	1.00
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	67.50	53.50	9.00	4.50	0.50
..................................TGGCAAGATGTCGGCATAGCAG..............................................................................................	22	2	64.00	55.00	8.50	0.50	0.00
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	63.50	57.00	3.00	3.50	0.00
..................................TGGCAAGATGTGGGCATAGCTGA.............................................................................................	23	2	63.50	62.50	0.00	1.00	0.00
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	59.00	47.50	8.00	3.50	0.00
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	58.00	31.00	18.50	8.50	0.00
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	56.00	49.50	4.00	2.50	0.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	54.50	34.00	20.00	0.50	0.00
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	53.00	17.50	15.00	17.00	3.50
..................................TGGCAAGATGTCGGCATATCTG..............................................................................................	22	2	52.50	33.00	14.00	4.50	1.00
..................................TGGCAAGATGTCGGCATAGCTGATTT..........................................................................................	26	1	102.00	51.00	43.00	8.00	0.00
..................................TGGCAATATGTCGGCATAGCTGA.............................................................................................	23	2	50.00	26.00	20.00	2.50	1.50
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	47.50	23.00	19.00	5.00	0.50
..................................TGGCAAGATGTCGGCATATCT...............................................................................................	21	2	45.00	35.00	9.00	1.00	0.00
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	44.00	29.50	12.50	1.00	1.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	42.50	32.50	5.50	3.50	1.00
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	42.00	25.50	14.50	2.00	0.00
..................................TGGCAAGATGTCGGCTTAGCTGA.............................................................................................	23	2	41.50	38.00	1.50	2.00	0.00
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	41.50	20.00	17.50	4.00	0.00
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	41.50	23.50	15.00	0.50	2.50
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	40.50	18.50	15.00	6.00	1.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	40.50	31.50	4.00	5.00	0.00
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	40.00	24.00	2.50	12.00	1.50
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	39.00	23.50	9.50	5.50	0.50
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	38.50	32.50	3.00	3.00	0.00
..................................TGGCAAGATGTAGGCATAGCTG..............................................................................................	22	2	37.50	31.00	2.00	4.50	0.00
..................................TGGCAAAATGTCGGCATAGCTGA.............................................................................................	23	2	37.00	33.50	2.50	0.50	0.50
..................................TGGCAAGATGTCGGCATAGATG..............................................................................................	22	2	37.00	24.00	10.50	2.00	0.50
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	36.00	22.00	10.50	3.00	0.50
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	35.00	28.50	0.00	6.50	0.00
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	34.50	17.00	4.00	13.00	0.50
..................................TGGAAAGATGTCGGCATAGCTG..............................................................................................	22	2	34.50	24.50	8.50	1.50	0.00
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	34.50	19.50	6.50	5.50	3.00
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	34.00	17.00	15.50	0.50	1.00
..................................TGGCAAGATGTCAGCATAGCTG..............................................................................................	22	2	34.00	29.50	1.50	3.00	0.00
..................................TGGCAAGATGACGGCATAGCTG..............................................................................................	22	2	33.50	24.00	0.50	9.00	0.00
..................................TGGCAAGATGTCGGCATAGCG...............................................................................................	21	2	33.00	30.00	1.50	1.50	0.00
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	31.50	16.50	8.00	7.00	0.00
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	31.00	19.50	9.50	2.00	0.00
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	30.50	20.50	6.00	3.50	0.50
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	30.00	9.00	12.00	8.50	0.50
..................................TGTCAAGATGTCGGCATAGCTG..............................................................................................	22	2	30.00	12.00	17.50	0.50	0.00
..................................TGGCAAGATGTAGGCATAGCT...............................................................................................	21	2	30.00	28.00	1.50	0.50	0.00
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	30.00	22.00	2.00	5.00	1.00
..................................TGGCAAGATGTCGGCATAGCAT..............................................................................................	22	1	58.00	49.00	7.00	2.00	0.00
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	29.00	10.00	5.00	12.50	1.50
..................................TGGCAAGATGTCTGCATAGCTG..............................................................................................	22	2	28.50	21.50	5.00	2.00	0.00
..................................TGGAAAGATGTCGGCATAGCT...............................................................................................	21	2	26.50	17.00	4.50	5.00	0.00
..................................TGGCAAGATGTCGTCATAGCT...............................................................................................	21	2	26.50	24.50	2.00	0.00	0.00
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	26.50	14.00	1.00	10.00	1.50
..................................TGGCAACATGTCGGCATAGCTGA.............................................................................................	23	2	26.50	20.00	4.50	2.00	0.00
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	26.50	10.50	8.50	6.00	1.50
..................................TGGAAAGATGTCGGCATAGATGA.............................................................................................	23	1	53.00	30.00	23.00	0.00	0.00
..................................TGGCAAGATGTCGTCATAGCTG..............................................................................................	22	2	26.00	18.00	5.00	2.50	0.50
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	26.00	15.50	7.00	3.00	0.50
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	25.50	10.00	2.00	11.50	2.00
..................................TGGCAAGATGTCGGCATAGAT...............................................................................................	21	2	25.00	20.00	3.50	1.50	0.00
..................................TGGCAAGATGTCGGCATAGCTGACG...........................................................................................	25	1	49.00	31.00	14.00	4.00	0.00
..................................TGGCAAGATGTCGGCATAGCTGAG............................................................................................	24	2	24.00	19.00	2.00	3.00	0.00
..................................TGGCAAGATGTCCGCATAGCTG..............................................................................................	22	2	24.00	22.50	0.00	1.50	0.00

dp4

CG--------TACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAAC-------------AGAT-------C	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	27594.50	15098.00	9673.00	2377.00	446.50
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	6148.00	3677.50	657.00	1550.50	263.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	3577.00	2432.00	64.50	967.00	113.50
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	1257.00	1047.50	6.50	50.50	152.50
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	787.50	445.00	227.00	111.50	4.00
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	584.00	369.00	78.00	117.50	19.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	955.00	62.00	737.00	156.00	0.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	446.00	356.00	4.00	82.00	4.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	427.00	267.00	35.50	124.00	0.50
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	410.50	281.00	55.50	72.00	2.00
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	400.00	173.00	7.00	121.00	99.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	1	501.00	351.00	71.00	77.00	2.00
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	194.00	167.00	1.00	8.00	18.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	166.50	68.50	63.00	26.00	9.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	133.50	86.50	4.00	40.50	2.50
..................................TGGCAAGATGTCGGCATAGCTGAAGTT.........................................................................................	27	1	255.00	212.00	28.00	9.00	6.00
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	205.00	148.00	2.00	47.00	8.00
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	83.50	10.50	53.00	3.00	17.00
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	69.50	58.50	5.00	6.00	0.00
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	55.50	0.00	42.50	13.00	0.00
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	52.00	15.00	31.00	5.50	0.50
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	48.00	36.00	0.00	11.50	0.50
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	46.00	43.00	0.00	1.00	2.00
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	46.00	9.00	34.00	3.00	0.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	43.00	9.50	29.00	4.50	0.00
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	43.00	5.00	33.50	4.50	0.00
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	40.00	21.00	15.00	4.00	0.00
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	38.00	15.00	19.50	3.50	0.00
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	37.00	16.00	19.50	1.00	0.50
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	36.50	16.00	16.50	3.00	1.00
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	34.50	14.00	16.50	4.00	0.00
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	34.00	11.00	20.00	2.50	0.50
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	34.00	21.00	10.00	1.50	1.50
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	31.00	12.00	16.50	2.50	0.00
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	29.50	10.50	16.50	2.50	0.00
..................................TGGCAAGATGTCGGCAGAGCTGA.............................................................................................	23	2	28.50	0.00	24.50	4.00	0.00
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	28.50	13.50	12.50	2.00	0.50
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	28.00	11.50	9.50	7.00	0.00
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	55.00	47.00	1.00	6.00	1.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	27.50	11.00	13.00	2.50	1.00
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	25.50	3.00	18.00	4.50	0.00
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	25.00	20.50	2.00	2.50	0.00
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	25.00	8.50	14.50	2.00	0.00
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	24.50	9.00	13.50	1.50	0.50
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	24.50	6.00	16.00	2.50	0.00
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	22.50	7.00	11.00	4.50	0.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	22.00	14.50	3.50	3.50	0.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	21.50	9.50	10.00	2.00	0.00
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	21.00	4.00	17.00	0.00	0.00
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	21.00	3.00	16.50	1.50	0.00
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	20.50	8.50	10.50	1.00	0.50
..................................TGGCAAGATGTCGGCATAGCTGAAG...........................................................................................	25	1	40.00	25.00	7.00	7.00	1.00
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	20.00	5.50	11.50	3.00	0.00
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	19.50	11.50	4.50	3.50	0.00
..................................TGGCAAGATGTCGGCATAGCTGAAGT..........................................................................................	26	1	38.00	22.00	15.00	0.00	1.00
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	35.00	27.00	1.00	7.00	0.00
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	17.00	1.50	13.50	2.00	0.00
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	17.00	5.50	6.50	4.50	0.50
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	17.00	4.50	11.00	1.00	0.50
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	16.50	4.00	9.50	2.50	0.50
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	16.50	5.50	8.00	3.00	0.00
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	16.00	2.50	11.50	2.00	0.00
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	16.00	11.00	4.50	0.50	0.00
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	15.50	5.00	9.50	1.00	0.00
.................................CTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	15.50	10.00	2.50	3.00	0.00
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	15.00	6.50	6.50	1.50	0.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	14.50	9.00	3.50	1.50	0.50
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	14.00	5.50	6.00	2.50	0.00
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	14.00	4.00	9.00	0.50	0.50
..................................TGGCAAGCTGTCGGCATAGCTGA.............................................................................................	23	2	13.50	4.50	8.00	1.00	0.00
..................................TGGCAAGATGTCGGCATTGCTGA.............................................................................................	23	2	13.50	1.00	11.50	1.00	0.00
..................................TGGCAAAATGTCGGCATAGCTGA.............................................................................................	23	2	13.50	6.50	6.00	0.50	0.50
..................................TGGCCAGATGTCGGCATAGCTGA.............................................................................................	23	2	13.00	4.50	6.50	2.00	0.00
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	13.00	7.50	2.50	3.00	0.00
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	13.00	6.50	5.50	1.00	0.00
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	13.00	8.50	1.50	3.00	0.00
..................................................................................CGCTATGCTGCATCTAGTCAG...............................................	21	1	25.00	3.00	21.00	1.00	0.00
..................................TGGCATGATGTCGGCATAGCTGA.............................................................................................	23	2	12.50	4.00	7.00	1.50	0.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	12.50	7.50	2.00	1.00	2.00
..................................TGGCAAGATGTCGGCATAGTTGA.............................................................................................	23	2	12.50	3.50	8.00	1.00	0.00
..................................TGGCAAGATGTCGGCTTAGCTGA.............................................................................................	23	2	12.00	2.50	9.50	0.00	0.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	12.00	6.50	3.50	2.00	0.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	10.50	8.00	0.50	0.00	2.00
..................................TGGCAAGATGTCGGCATAGT................................................................................................	20	2	10.50	10.00	0.00	0.50	0.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	10.50	6.50	0.50	3.00	0.50
..................................TGGCAAGATGTCGGCATAGCGGA.............................................................................................	23	2	10.50	2.50	6.00	2.00	0.00
..................................CGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	10.00	6.50	0.50	2.00	1.00
..................................TGGCAAGAGGTCGGCATAGCTGA.............................................................................................	23	2	10.00	0.50	6.50	3.00	0.00
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	9.50	5.00	3.50	1.00	0.00
..................................TGGCAAGATGTCGGGATAGCTGA.............................................................................................	23	2	9.50	2.50	6.50	0.50	0.00
..................................TGGCAAGATGTCGGAATAG.................................................................................................	19	2	9.50	8.50	0.00	0.50	0.50
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	19.00	16.00	1.00	2.00	0.00
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	9.50	2.50	2.00	2.00	3.00
..................................TGGCAAGATGTCGGCATAGGTGA.............................................................................................	23	2	9.50	0.00	9.00	0.50	0.00
..................................TGACAAGATGTCGGCATAGCTG..............................................................................................	22	2	9.00	3.00	0.50	5.50	0.00
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	9.00	4.00	2.00	3.00	0.00
..................................TGGCAAGATGTCGGCATAGCTC..............................................................................................	22	2	9.00	4.00	0.50	4.00	0.50
..................................TGGCACGATGTCGGCATAGCTGA.............................................................................................	23	2	9.00	4.00	4.50	0.50	0.00
..................................................................................CGCTATGCTGCATCTAGTCA................................................	20	1	17.00	8.00	1.00	8.00	0.00
..................................TGGCAAGATGTCGGCATAGCAT..............................................................................................	22	1	17.00	16.00	0.00	1.00	0.00
..................................TGGCAAGATGTCGGCATAGA................................................................................................	20	2	8.50	8.00	0.00	0.50	0.00

droPer1

CG--------TACC---GCATCTGTTGGT-AAATTGGCAAGATGTCGGCATAGCTGAAGTTGAAAAGCGATCTT--TGAGAACGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAAC-------------AGAT-------C	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	17924.00	8110.00	1515.00	2311.50	2443.00	3544.50
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	8064.00	2513.50	131.50	1710.00	1864.00	1845.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	4039.00	923.50	16.00	1181.50	1688.00	230.00
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	720.00	84.00	1.50	118.00	120.50	396.00
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	704.00	8.00	5.50	3.00	12.00	675.50
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	492.00	166.50	13.00	112.00	148.00	52.50
..................................TGGCAAGATGTCGGCATAGCTGAAGTT.........................................................................................	27	1	665.00	445.00	5.00	24.00	22.00	169.00
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	324.00	196.00	8.50	46.50	57.50	15.50
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	315.00	93.00	0.50	65.50	155.50	0.50
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	297.50	178.00	2.50	8.50	11.00	97.50
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	1	587.00	354.00	10.00	89.00	97.00	37.00
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	283.00	159.50	29.00	10.00	10.50	74.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	180.50	77.00	0.50	46.00	52.50	4.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	352.00	6.00	163.00	75.00	106.00	2.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	158.50	1.00	5.00	31.50	49.00	72.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	120.00	84.50	13.50	13.50	6.50	2.00
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	85.50	32.50	0.50	2.00	0.50	50.00
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	162.00	70.00	1.00	29.00	48.00	14.00
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	54.50	2.00	4.00	8.00	38.50	2.00
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	53.50	45.50	1.00	2.50	4.00	0.50
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	47.00	9.50	0.00	8.00	29.00	0.50
..................................TGGCAAGATGGCGGCATAGCT...............................................................................................	21	2	46.00	0.00	0.00	7.50	38.50	0.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	43.00	8.00	0.00	0.50	0.50	34.00
..................................TGGCAAGATGGCGGCATAGCTG..............................................................................................	22	2	41.50	2.00	0.50	4.50	34.00	0.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	36.50	2.00	1.00	1.50	2.50	29.50
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	36.50	12.50	0.00	1.50	3.50	19.00
..................................TGGCAAGATGTCGGCATAGCTGAAGT..........................................................................................	26	1	69.00	42.00	0.00	3.00	6.00	18.00
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	65.00	42.00	0.00	7.00	10.00	6.00
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	32.50	5.50	3.00	5.50	15.50	3.00
..................................TGGCAAGATGTCGGCATAGCTGAAG...........................................................................................	25	1	64.00	42.00	0.00	6.00	5.00	11.00
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	29.50	13.50	2.00	2.50	2.00	9.50
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	25.00	9.50	1.00	3.50	7.00	4.00
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	24.00	5.00	3.50	1.00	1.00	13.50
..................................TGGCAAGATGTCGGCATAGCGG..............................................................................................	22	2	22.50	0.00	0.00	0.50	5.00	17.00
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	22.00	6.50	1.00	3.00	9.00	2.50
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	21.50	4.00	0.00	1.50	1.50	14.50
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	21.00	6.00	0.00	0.00	1.00	14.00
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	20.50	7.00	0.50	2.00	8.00	3.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	20.50	10.50	0.00	0.00	0.00	10.00
..................................TGGCAAGATGTCGGCATAGCC...............................................................................................	21	2	20.00	0.00	0.00	0.00	4.00	16.00
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	20.00	1.50	2.00	5.50	10.00	1.00
..................................TGGCAAGATGTCGGCATAGCTC..............................................................................................	22	2	20.00	1.50	0.00	5.50	13.00	0.00
..................................TGGCAAGATGTCAGCATAGCTG..............................................................................................	22	2	18.50	2.50	1.00	3.50	5.00	6.50
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	18.50	3.50	2.50	7.00	4.00	1.50
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	18.50	8.50	2.00	2.50	1.50	4.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	18.50	4.50	2.00	2.50	3.50	6.00
.......................................AGATGTCGGCATAGCTGA.............................................................................................	18	2	18.00	1.00	0.00	0.00	0.50	16.50
..................................TGGCAAGATGTCGGAATAGCTGG.............................................................................................	23	2	17.50	0.00	0.50	0.00	0.00	17.00
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	17.50	5.50	2.00	0.00	5.50	4.50
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	17.50	5.50	2.50	6.00	3.00	0.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	17.50	3.50	4.50	3.00	6.00	0.50
..................................TGGCAAGATGCCGGCATAGCTG..............................................................................................	22	2	17.50	4.00	0.00	2.50	9.00	2.00
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	16.50	7.00	2.00	2.50	5.00	0.00
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	16.00	4.50	1.00	2.00	3.50	5.00
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	16.00	8.50	1.00	2.50	2.50	1.50
..................................TGGCAAGATGACGGCATAGCT...............................................................................................	21	2	15.50	0.50	0.00	3.00	12.00	0.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	15.00	3.50	2.50	2.00	6.00	1.00
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	15.00	8.50	1.50	1.00	3.50	0.50
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	15.00	9.00	0.50	1.50	3.00	1.00
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	14.50	6.50	1.00	2.00	5.00	0.00
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	14.50	0.50	6.50	1.00	6.00	0.50
..................................TGTCAAGATGTCGGCATAGCT...............................................................................................	21	2	14.50	0.50	0.50	0.00	1.50	12.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	14.00	2.50	0.00	5.50	5.50	0.50
..................................TGGCAAGATGACGGCATAGCTG..............................................................................................	22	2	14.00	0.50	0.00	2.50	10.50	0.50
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	13.50	5.50	0.00	0.50	2.00	5.50
..................................TGGCAAGAGGTCGGCATAGCTGA.............................................................................................	23	2	13.50	0.00	0.50	1.00	11.50	0.50
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	13.50	4.50	3.00	1.50	2.50	2.00
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	13.50	2.50	2.00	2.50	5.50	1.00
..................................CGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	13.00	2.50	0.00	3.00	6.00	1.50
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	13.00	3.50	2.00	1.50	5.50	0.50
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	13.00	2.50	0.00	3.00	5.50	2.00
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	13.00	3.50	0.50	4.50	3.00	1.50
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	12.50	3.50	0.00	0.00	1.50	7.50
..................................TGGCAAGGTGTCGGCATAGCTG..............................................................................................	22	2	12.50	2.00	0.00	2.50	6.00	2.00
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	11.50	1.50	1.00	5.00	3.00	1.00
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	23.00	6.00	0.00	3.00	14.00	0.00
..................................TGGCAAGATGCCGGCATAGCT...............................................................................................	21	2	11.50	0.00	0.00	1.50	10.00	0.00
..................................TGGCAAGATGTCGGCAGAGCTGA.............................................................................................	23	2	11.50	0.00	2.50	1.00	7.00	1.00
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	11.50	0.50	5.00	1.00	5.00	0.00
..................................TGGCAAGAGGTCGGCATAGCTG..............................................................................................	22	2	11.50	0.50	0.00	1.50	9.50	0.00
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	11.50	3.00	1.50	1.50	4.00	1.50
.....................................CAAGATGTCGGCATAGCTGA.............................................................................................	20	2	11.00	2.50	1.00	1.50	0.50	5.50
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	11.00	1.00	0.00	3.00	6.00	1.00
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	11.00	8.00	1.00	0.50	1.50	0.00
..................................TGGCAAGATGTCTGCATAGCTG..............................................................................................	22	2	10.50	2.00	0.00	2.00	3.50	3.00
..................................TGGCAAGATGTCGGCATAGCG...............................................................................................	21	2	10.50	0.00	0.00	1.50	5.50	3.50
...................................GGCAAGATGTCGGCATAGCTG..............................................................................................	21	2	10.50	6.50	0.00	2.50	0.50	1.00
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	20.00	11.00	0.00	2.00	4.00	3.00
..................................TGGCAAGATGTCGCCATAGCTG..............................................................................................	22	2	10.00	0.50	0.00	2.50	7.00	0.00
..................................TGGCAAGATGTCGTCATAGCTG..............................................................................................	22	2	10.00	4.50	0.00	1.00	1.50	3.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	10.00	1.50	1.00	1.50	3.50	2.50
..................................TGGCAAGATGTCGGCATACCTG..............................................................................................	22	2	10.00	0.00	0.00	3.00	7.00	0.00
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	2	9.50	3.00	0.50	3.50	2.50	0.00
..................................TGGCAAGATGGCGGCATAGCTGT.............................................................................................	23	1	19.00	0.00	0.00	4.00	15.00	0.00
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	9.50	7.50	0.00	1.00	1.00	0.00
.................................CTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	9.50	0.50	0.00	4.50	4.50	0.00
..................................TGGCAAGATGTCGGCATAGTTGA.............................................................................................	23	2	9.50	4.00	1.50	1.00	1.50	1.50
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	9.00	1.50	1.50	4.00	1.50	0.50
..................................TGGCACGATGTCGGCATAGCTG..............................................................................................	22	2	9.00	0.00	0.00	7.00	2.00	0.00
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	9.00	2.00	1.00	2.50	3.00	0.50
..................................TGGCAAGATGTCGGAATAGCTGAA............................................................................................	24	2	9.00	0.50	0.00	0.50	0.00	8.00

droWil1

CATCATCAT-TATC-----ATCTGTTTTTCGAATTGGCAAGATGTCGGCATAGCTGATAAT--------ATTTTTAGAAAAGCGCTATGCTGCATCTAGTCAGTTTATTCAATAGAGCAATCGAC------------AATATTATCTAAC	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	116514.00	24464.00	54778.00	27918.50	9353.50
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	22021.50	4341.00	5382.50	2236.00	10062.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	8836.50	2611.00	632.00	967.00	4626.50
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	3292.50	437.00	107.50	146.00	2602.00
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	2656.00	922.50	1586.00	132.00	15.50
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	1	4254.00	979.00	1705.00	1171.00	399.00
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	1532.00	23.00	49.00	27.00	1433.00
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	1494.00	452.50	232.50	329.00	480.00
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	1139.00	737.00	101.50	22.50	278.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	843.00	257.50	372.50	148.50	64.50
..................................................................................CGCTATGCTGCATCTAGTCAGT..............................................	22	1	1580.00	18.00	1365.00	189.00	8.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	529.50	275.00	227.50	23.50	3.50
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	506.50	258.50	19.50	106.50	122.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	454.50	12.00	39.00	67.50	336.00
.................................TTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	453.50	63.50	256.00	82.00	52.00
..................................TGGCAAGATGTCGGCATAGCC...............................................................................................	21	2	419.50	4.50	1.00	2.00	412.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	351.50	152.50	66.50	56.00	76.50
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	659.00	111.00	211.00	215.00	122.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	298.50	17.50	128.00	34.50	118.50
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	268.50	33.50	138.50	90.00	6.50
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	267.50	196.00	15.00	7.50	49.00
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	228.50	10.50	129.00	87.50	1.50
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	215.50	35.00	85.00	89.00	6.50
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	205.50	12.50	99.00	41.00	53.00
.................................TTGGCAAGATGTCGGCATAGC................................................................................................	21	2	198.50	14.00	7.00	5.00	172.50
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	197.50	8.50	67.00	114.00	8.00
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	184.50	29.00	104.50	50.50	0.50
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	183.00	6.50	62.50	113.50	0.50
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	169.00	5.50	135.50	20.50	7.50
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	161.50	18.00	73.00	50.50	20.00
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	311.00	48.00	18.00	46.00	199.00
.................................TTGGCAAGATGTCGGCATAGCT...............................................................................................	22	2	152.50	5.00	6.50	4.50	136.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	152.50	26.00	37.00	24.50	65.00
.................................TTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	148.50	13.00	43.50	6.00	86.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	144.50	19.00	43.50	41.50	40.50
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	132.00	20.50	56.50	32.00	23.00
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	123.00	20.00	42.00	48.50	12.50
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	123.00	30.50	39.00	32.00	21.50
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	120.50	25.00	57.50	32.50	5.50
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	120.50	21.50	56.00	39.50	3.50
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	115.50	28.50	55.00	25.00	7.00
..................................TGGCCAGATGTCGGCATAGCTGA.............................................................................................	23	2	113.50	9.00	74.50	30.00	0.00
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	112.00	22.00	59.00	25.50	5.50
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	111.00	16.50	42.00	45.00	7.50
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	109.50	8.50	81.50	14.50	5.00
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	106.00	20.00	36.50	43.50	6.00
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	101.00	6.50	65.50	17.50	11.50
..................................TGTCAAGATGTCGGCATAGCT...............................................................................................	21	2	100.50	3.00	1.50	4.00	92.00
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	100.50	19.50	52.50	20.00	8.50
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	100.00	23.50	44.00	30.50	2.00
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	97.50	10.50	31.00	51.50	4.50
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	95.00	31.00	39.00	18.50	6.50
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	95.00	19.00	14.00	20.50	41.50
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	91.50	6.50	65.50	19.50	0.00
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	91.00	5.50	14.00	70.50	1.00
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	89.50	13.00	26.00	48.00	2.50
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	86.00	13.00	41.00	29.00	3.00
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	84.00	18.00	36.50	29.00	0.50
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	83.50	9.00	23.00	49.50	2.00
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	80.50	12.00	39.00	25.00	4.50
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	79.00	21.00	32.50	21.00	4.50
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	76.00	18.50	37.00	18.50	2.00
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	74.50	8.50	17.50	43.50	5.00
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	73.50	10.50	24.00	37.00	2.00
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	73.50	17.00	34.00	20.00	2.50
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	2	73.00	17.00	7.00	24.00	25.00
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	71.50	14.00	29.50	24.50	3.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	70.00	14.50	34.00	20.50	1.00
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	67.00	11.00	28.50	25.00	2.50
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	64.50	11.00	31.00	22.50	0.00
................................ATTGGCAAGATGTCGGCATAGCT...............................................................................................	23	1	124.00	7.00	46.00	2.00	69.00
..................................TGGCAAGATGTCGGCATAGCG...............................................................................................	21	2	61.00	0.50	0.50	0.00	60.00
..................................TGGCAAGCTGTCGGCATAGCTGA.............................................................................................	23	2	60.50	15.00	19.00	26.50	0.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	60.00	15.50	16.50	15.00	13.00
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	59.50	6.50	15.50	37.00	0.50
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	58.00	16.00	21.50	14.00	6.50
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	55.50	13.00	20.00	21.50	1.00
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	54.50	12.50	24.50	17.00	0.50
..................................TGGCAAGATGTCGGCATAGCGG..............................................................................................	22	2	52.50	1.50	0.50	0.00	50.50
..................................TGGCAATATGTCGGCATAGCTGA.............................................................................................	23	2	51.50	4.50	44.00	3.00	0.00
..................................TTGCAAGATGTCGGCATAGCT...............................................................................................	21	2	50.00	2.50	0.50	2.00	45.00
..................................TGGCAAGATTTCGGCATAGCTG..............................................................................................	22	2	50.00	2.50	8.50	2.50	36.50
..................................TGGCAAGATGTCGGCATAGCTGATTT..........................................................................................	26	1	98.00	9.00	37.00	42.00	10.00
....................................TCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	49.00	6.00	20.00	13.50	9.50
..................................TGGCAAGATGTCGGCATAGTTGA.............................................................................................	23	2	47.00	6.00	15.00	24.50	1.50
..................................TGGCAAGATGTCAGCATAGCTG..............................................................................................	22	2	45.50	6.50	5.50	6.00	27.50
..................................TGGCAAGATxTCGGCATAGCTGA.............................................................................................	22	2	44.50	8.00	24.50	11.50	0.50
.....................................CAAGATGTCGGCATAGCTGA.............................................................................................	20	2	43.00	4.50	10.50	10.00	18.00
..................................TGGCACGATGTCGGCATAGCTGA.............................................................................................	23	2	42.50	7.50	13.00	21.50	0.50
..................................TGGCAACATGTCGGCATAGCTGA.............................................................................................	23	2	38.50	12.50	23.00	2.50	0.50
..................................TGCCAAGATGTCGGCATAGCT...............................................................................................	21	2	37.50	2.00	1.50	1.00	33.00
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	36.50	20.00	11.00	2.00	3.50
..................................TGGCAAGATGTCGGCATAGCTC..............................................................................................	22	2	34.00	9.00	3.50	4.50	17.00
..................................TGGCAAGATGTCTGCATAGCTG..............................................................................................	22	2	34.00	2.00	17.50	2.00	12.50
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	33.50	15.50	2.50	6.00	9.50
..................................TGTCAAGATGTCGGCATAGCTG..............................................................................................	22	2	33.50	2.00	13.50	4.50	13.50
..................................TGGCATGATGTCGGCATAGCTGA.............................................................................................	23	2	32.50	6.00	12.00	14.00	0.50
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	2	31.50	4.50	16.50	5.00	5.50
.................................TTGGCAAGATGTCGGCATAGCTGT.............................................................................................	24	2	31.00	0.00	2.50	1.00	27.50
.................................CTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	30.50	10.00	11.50	8.00	1.00
..................................TGGCAAGATGCCGGCATAGCTG..............................................................................................	22	2	29.50	8.50	10.50	6.50	4.00

droVir3

CG---TCGCCTCGC-----ATCTGTTGTT-CAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATTT--TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAATCAAC------------AAAA---------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	54681.50	30066.00	1672.50	12112.00	7907.00	2924.00
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	20326.00	6175.00	1052.50	609.00	9275.00	3214.50
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	11036.00	4470.50	842.50	109.50	4232.00	1381.50
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	3246.50	374.00	55.00	11.50	2063.50	742.50
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	2517.50	27.50	7.00	45.50	1808.50	629.00
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	2060.00	1168.50	5.00	14.00	833.50	39.00
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	1278.00	1043.00	9.00	156.50	67.50	2.00
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	862.50	381.50	89.00	69.50	186.50	136.00
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	848.50	512.00	65.00	98.50	82.50	90.50
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	639.00	381.50	107.50	13.00	84.50	52.50
..................................TGGCAAGATGTCGGCATAGCC...............................................................................................	21	2	574.50	5.50	4.50	0.00	400.50	164.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	506.50	458.00	7.00	34.00	6.50	1.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	459.50	302.50	37.50	42.50	47.00	30.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	452.50	275.00	60.50	3.50	84.50	29.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	445.50	199.00	1.50	245.00	0.00	0.00
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	435.00	286.00	1.00	2.50	138.50	7.00
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	435.00	109.00	48.00	12.00	107.00	159.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	190.00	22.50	20.00	99.50	26.00	22.00
..................................TGGCAAGATGTCGGCATAGCTGACG...........................................................................................	25	1	331.00	253.00	10.00	45.00	15.00	8.00
..................................TGGCAAGATGTCGGCATAGCG...............................................................................................	21	2	165.00	2.00	1.50	0.50	132.50	28.50
..................................TGGCAAGATGTCGGCATAGCGG..............................................................................................	22	2	141.50	2.50	2.00	2.00	108.00	27.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	122.00	18.50	0.50	23.00	70.50	9.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	229.00	44.00	70.00	113.00	2.00	0.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	104.50	22.50	0.00	28.50	46.50	7.00
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	104.00	56.50	6.00	33.50	6.50	1.50
..................................TGGCAAGATGTCGGCATAGCTGACGTT.........................................................................................	27	1	191.00	81.00	4.00	106.00	0.00	0.00
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	95.00	8.00	3.50	74.00	6.50	3.00
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	90.50	12.50	0.50	71.50	4.50	1.50
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	88.00	72.50	0.00	1.00	14.00	0.50
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	164.00	71.00	12.00	25.00	30.00	26.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	81.50	42.50	3.00	33.50	1.50	1.00
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	78.50	41.00	5.00	21.00	10.50	1.00
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	78.50	43.00	8.50	0.00	18.50	8.50
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	77.50	21.00	4.00	50.50	2.00	0.00
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	76.50	20.50	20.00	33.50	2.00	0.50
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	71.50	48.50	5.50	5.50	7.50	4.50
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	71.00	28.50	3.50	34.50	3.00	1.50
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	68.50	47.00	2.50	18.00	1.00	0.00
..................................TGTCAAGATGTCGGCATAGCT...............................................................................................	21	2	65.50	5.50	0.50	0.00	50.00	9.50
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	65.00	23.00	1.00	40.50	0.00	0.50
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	64.00	35.00	2.00	22.50	3.00	1.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	64.00	11.50	1.00	9.50	36.50	5.50
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	61.50	11.00	1.00	44.00	4.50	1.00
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	61.50	38.00	2.00	18.50	2.00	1.00
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	61.00	38.50	0.00	5.00	17.00	0.50
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	59.50	22.00	0.50	31.00	3.00	3.00
.................................TTGGCAAGATGTCGGAATAGCT...............................................................................................	22	2	59.00	22.00	0.00	0.50	33.00	3.50
..................................TGGCAAGATGTCGGAATAGCC...............................................................................................	21	2	58.00	1.00	0.00	0.00	54.00	3.00
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	57.00	52.50	0.50	2.00	2.00	0.00
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	56.00	33.00	1.50	15.00	5.00	1.50
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	54.00	8.00	2.00	43.50	0.50	0.00
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	54.00	27.50	2.00	23.00	1.50	0.00
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	51.50	23.00	2.50	20.00	5.00	1.00
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	1	102.00	59.00	5.00	25.00	7.00	6.00
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	100.00	63.00	26.00	1.00	5.00	5.00
..................................TGGCAAGATGTCGGCAAAGCTGA.............................................................................................	23	2	49.00	46.50	0.00	2.00	0.00	0.50
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	48.50	18.50	0.00	1.50	22.50	6.00
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	46.00	17.50	2.00	22.50	2.50	1.50
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	45.50	21.00	2.00	6.00	12.00	4.50
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	45.50	23.00	5.00	0.50	11.50	5.50
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	45.50	24.00	1.00	17.50	3.00	0.00
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	45.00	24.00	1.50	15.50	3.00	1.00
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	45.00	12.50	0.50	5.00	20.50	6.50
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	44.00	20.50	2.00	11.50	5.50	4.50
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	43.50	12.00	2.50	20.50	7.00	1.50
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	42.50	14.50	3.50	22.00	1.00	1.50
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	41.50	17.50	2.50	19.50	1.50	0.50
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	41.00	9.50	1.00	30.50	0.00	0.00
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	40.50	19.50	2.00	14.50	3.00	1.50
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	40.50	17.50	1.50	5.00	9.50	7.00
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	40.00	13.50	0.50	8.00	16.50	1.50
..................................TGGCAAGATTTCGGCATAGCTG..............................................................................................	22	2	38.00	2.50	0.50	2.50	27.50	5.00
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	36.50	9.00	2.50	22.50	2.50	0.00
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	36.00	18.00	2.50	9.00	5.50	1.00
..................................TGGCAATATGTCGGCATAGCTGA.............................................................................................	23	2	36.00	4.00	1.00	30.00	1.00	0.00
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	35.50	13.50	2.00	15.50	4.00	0.50
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	35.00	20.00	1.50	9.00	4.00	0.50
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	34.50	5.50	1.00	3.00	22.50	2.50
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	34.50	17.00	1.50	14.00	2.00	0.00
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	34.50	13.50	4.50	10.50	4.00	2.00
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	34.00	13.00	5.50	13.00	2.50	0.00
.....................................CAAGATGTCGGCATAGCTGA.............................................................................................	20	2	33.00	4.50	0.00	0.50	21.50	6.50
..................................CGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	32.50	9.00	4.00	3.50	10.50	5.50
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	64.00	26.00	2.00	12.00	15.00	9.00
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	30.50	12.50	5.00	11.00	1.50	0.50
..................................TTGCAAGATGTCGGCATAGCT...............................................................................................	21	2	29.50	1.50	0.00	0.50	23.00	4.50
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	28.00	13.50	4.00	8.00	1.50	1.00
..................................TGGCAAGATGCCGGCATAGCTG..............................................................................................	22	2	27.50	10.50	5.50	1.50	8.50	1.50
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	26.50	5.50	5.00	2.50	10.50	3.00
.................................TTGGCAAGATGTCGGAATAGC................................................................................................	21	2	26.00	11.00	0.00	0.00	14.00	1.00
..................................TGGCAAGATGGCGGCATAGCT...............................................................................................	21	2	26.00	5.00	16.50	1.00	2.50	1.00
..................................TGGCAAGATGTCGGCATAGA................................................................................................	20	2	25.50	17.50	3.00	0.00	2.50	2.50
.......................................AGATGTCGGCATAGCTGA.............................................................................................	18	2	25.00	0.50	0.00	0.50	17.50	6.50
..................................TGGCAAGATGTCAGCATAGCTG..............................................................................................	22	2	24.50	8.00	3.50	2.50	8.00	2.50
..................................TGGCAAGATGTCGGAATAG.................................................................................................	19	2	24.50	20.50	1.00	0.00	3.00	0.00
...................................GGCAAGATGTCGGCATAGCT...............................................................................................	20	2	24.00	4.50	1.00	0.00	16.50	2.00
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	23.50	10.50	0.50	10.50	1.00	1.00
.................................CTGGCAAGATGTCGGCATAGCTG..............................................................................................	23	2	23.00	16.50	2.00	2.00	2.50	0.00
..................................TGGCAAGATGGCGGCATAGCTG..............................................................................................	22	2	23.00	5.00	9.50	2.50	3.00	3.00
..................................TGGCAAGATGTCGGCATAGCTC..............................................................................................	22	2	22.50	8.50	6.50	1.00	4.50	2.00
..................................TGCCAAGATGTCGGCATAGCT...............................................................................................	21	2	22.00	2.00	0.50	0.00	12.00	7.50

droMoj3

CG--GT-TTAT--C---GCATCTATTGTT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTCAAAGCGCAT-T--GCATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACAGTCAAC---------------AT-------C	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	42275.00	27453.00	1451.50	1277.00	12093.50
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	5756.50	3704.00	808.50	761.50	482.50
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	5023.50	3353.50	884.00	752.00	34.00
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	999.50	879.50	9.50	10.00	100.50
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	908.00	869.00	21.00	17.50	0.50
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	635.50	488.00	45.50	42.00	60.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	448.00	263.50	92.50	91.00	1.00
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	414.00	269.50	55.00	44.50	45.00
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	410.50	298.50	50.50	54.00	7.50
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	720.00	22.00	28.00	24.00	646.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	335.50	245.50	37.00	22.00	31.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	309.00	284.50	6.00	8.00	10.50
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	242.50	235.00	5.00	2.50	0.00
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	196.50	117.00	38.50	38.00	3.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	104.50	6.00	21.00	11.00	66.50
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	91.50	16.50	5.50	3.50	66.00
..................................TGGCAAGATGTCGGCATAGCTGACG...........................................................................................	25	1	149.00	108.00	6.00	4.00	31.00
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	69.00	2.00	2.00	9.00	56.00
..................................TGGCAAGATGTCGGCATAGCTGACGTT.........................................................................................	27	1	135.00	47.00	1.00	0.00	87.00
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	65.50	46.00	2.00	4.50	13.00
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	129.00	108.00	6.00	3.00	12.00
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	127.00	105.00	6.00	5.00	11.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	60.50	17.00	1.50	12.50	29.50
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	59.50	6.00	3.50	13.50	36.50
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	55.50	24.00	3.50	3.00	25.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	51.50	46.50	0.50	1.00	3.50
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	100.00	62.00	22.00	15.00	1.00
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	48.50	37.50	5.00	1.00	5.00
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	48.00	21.00	3.50	6.00	17.50
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	47.00	24.00	4.00	3.00	16.00
..................................TGGCAAGATGGCGGCATAGCTGA.............................................................................................	23	2	45.00	11.50	11.00	4.50	18.00
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	42.00	39.00	0.00	0.00	3.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	41.50	17.50	2.00	6.50	15.50
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	39.50	15.50	3.50	1.50	19.00
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	37.50	29.00	1.50	1.50	5.50
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	37.00	20.50	0.50	2.00	14.00
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	37.00	13.50	1.50	1.00	21.00
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	34.50	15.50	1.00	4.50	13.50
..................................TGGCAAGATGTCGGAATAGCTT..............................................................................................	22	2	34.00	31.50	1.50	1.00	0.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	33.00	30.00	0.50	0.50	2.00
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	32.50	10.50	3.00	1.50	17.50
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	31.50	15.50	0.50	2.00	13.50
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	30.50	9.00	0.00	0.50	21.00
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	29.00	17.00	1.00	0.50	10.50
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	29.00	15.50	1.00	4.00	8.50
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	28.00	15.00	2.00	2.50	8.50
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	27.50	9.50	2.00	0.50	15.50
......................................AAGATGTCGGCATAGCTGA.............................................................................................	19	2	27.00	13.50	1.50	0.00	12.00
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	26.50	5.50	1.00	2.00	18.00
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	26.00	21.00	0.50	0.50	4.00
....................................GCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	25.50	21.00	1.00	0.00	3.50
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	25.00	20.50	1.00	1.00	2.50
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	25.00	7.50	3.00	1.00	13.50
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	24.50	13.50	2.00	2.00	7.00
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	24.00	10.00	1.00	1.50	11.50
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	1	48.00	30.00	2.00	6.00	10.00
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	23.50	13.00	1.00	1.00	8.50
..................................TGGCAAGATGGCGGCATAGCT...............................................................................................	21	2	23.00	0.50	12.00	10.50	0.00
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	23.00	22.00	0.00	0.00	1.00
..................................TGGCAAGATGACGGCATAGCTGA.............................................................................................	23	2	22.50	6.50	2.50	1.50	12.00
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	22.50	9.00	1.50	1.50	10.50
..................................TGGCAAGATGTCGGCATAGCA...............................................................................................	21	2	22.00	12.50	6.00	3.50	0.00
..................................TGGCAAGATGTCGGCATAGCTTT.............................................................................................	23	1	43.00	21.00	12.00	9.00	1.00
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	21.00	18.00	1.00	1.00	1.00
..................................TGGCAAGATGTCGGAATAG.................................................................................................	19	2	20.50	19.50	1.00	0.00	0.00
..................................TGGCAAGATGTCGGCATAGCTAA.............................................................................................	23	2	20.00	8.50	1.50	1.50	8.50
..................................TGGCAAGATGTCGGCATAACTGA.............................................................................................	23	2	19.00	4.00	2.00	1.50	11.50
..................................TGGCAAGATGGCGGCATAGCTG..............................................................................................	22	2	19.00	3.00	8.50	5.50	2.00
..................................TGGCAAGATGTCGGCATAGCTA..............................................................................................	22	2	18.00	11.50	2.00	4.00	0.50
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	17.50	9.50	1.50	2.50	4.00
..................................TGGCAAGATGTCGGCAGAGCTGA.............................................................................................	23	2	17.50	0.00	0.00	0.50	17.00
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	17.50	6.50	3.00	2.00	6.00
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	16.50	7.50	2.00	1.00	6.00
..................................TGGCAAGATGTCTGCATAGCT...............................................................................................	21	2	16.00	10.00	0.50	5.50	0.00
..................................AGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	15.00	5.00	3.00	1.00	6.00
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	15.00	11.50	0.00	1.50	2.00
..................................TGGCAAGATGGCGGCATAGCTGT.............................................................................................	23	1	29.00	0.00	11.00	11.00	7.00
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	14.50	8.00	0.50	0.50	5.50
..................................GGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	14.50	6.50	1.00	1.00	6.00
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	13.50	5.50	2.50	1.00	4.50
..................................TGGCACGATGTCGGCATAGCTGA.............................................................................................	23	2	13.00	0.50	1.00	6.00	5.50
..................................TGGCCAGATGTCGGCATAGCTGA.............................................................................................	23	2	12.50	2.00	0.00	1.00	9.50
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	12.50	5.50	3.50	0.50	3.00
..................................TGGCAAGATGTCGGCATCGCT...............................................................................................	21	2	11.50	0.50	2.50	8.50	0.00
..................................TGGCAAGATGTCGGCATAGA................................................................................................	20	2	11.50	9.00	1.50	1.00	0.00
..................................TGGCAAGATGTCGGCATAGTTGA.............................................................................................	23	2	11.50	4.00	1.00	1.00	5.50
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	11.50	2.00	1.00	1.00	7.50
..................................TGGCAAGATGTCGGCCTAGCT...............................................................................................	21	2	11.00	1.00	3.00	7.00	0.00
....................................TCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	11.00	11.00	0.00	0.00	0.00
..................................TGGCAAGCTGTCGGCATAGCTGA.............................................................................................	23	2	11.00	4.50	0.50	0.50	5.50
..................................................................................CGCTATGCTGCATCTAGTCCGT-.............................................	22	1	21.00	0.00	1.00	3.00	17.00
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	10.50	7.50	0.50	0.00	2.50
..................................TGGCAAGATGTCGGCATAGCTGACT...........................................................................................	25	1	21.00	3.00	0.00	1.00	17.00
..................................TGGCAAGATGTCGGCATAGGTGA.............................................................................................	23	2	10.00	1.00	0.00	0.00	9.00
..................................TGGCAAGATGTCGGCATCGCTG..............................................................................................	22	2	10.00	0.50	2.50	5.00	2.00
..................................TGGCAATATGTCGGCATAGCTGA.............................................................................................	23	2	10.00	8.50	0.00	0.00	1.50
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	10.00	2.50	4.50	3.00	0.00
..................................TGGCAAAATGTCGGCATAGCTGA.............................................................................................	23	2	10.00	3.00	0.00	1.50	5.50
..................................TGGCAAGATGTCGGCATTGCTGA.............................................................................................	23	2	10.00	2.00	0.00	0.50	7.50
..................................TGGCAAGATGTCGGCATAGT................................................................................................	20	2	9.50	6.50	1.00	2.00	0.00
..................................TGGCAAGATGCCGGCATAGCT...............................................................................................	21	2	9.50	4.00	3.50	2.00	0.00

droGri2

CG--ATT------C---TCATCTGTTGGT-GAATTGGCAAGATGTCGGCATAGCTGACGTTTGAAAGCGCATC---TTATAGCGCTATGCTGCATCTAGTCAGT-TATTCAATGGAACACTCAACATATCCATACCTGAAAT-------C	Size	Hit Count	Total Norm	V109 Male body
..................................TGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	12046.00	12046.00
..................................TGGCAAGATGTCGGCATAGCTG..............................................................................................	22	2	1596.00	1596.00
..................................TGGCAAGATGTCGGCATAGCT...............................................................................................	21	2	1138.00	1138.00
..................................TGGCAAGATGTCGGCATAGCTGAT............................................................................................	24	2	566.50	566.50
..................................TGGCAAGATGTCGGAATAGCTGA.............................................................................................	23	2	232.00	232.00
..................................TGGCAAGATGTCGGCATAGCTGT.............................................................................................	23	2	206.50	206.50
..................................TGGCAAGATGTCGGCATCGCTGA.............................................................................................	23	2	150.00	150.00
..................................TGGCAAGATGTCGGCATAGCTGAA............................................................................................	24	2	98.00	98.00
..................................TGGCAAGATGTCGGCATAGCTGC.............................................................................................	23	2	97.50	97.50
..................................TGGCAAGATGTCGGCATAGC................................................................................................	20	2	97.50	97.50
..................................TGGCAAGATGTCGGAATAGCT...............................................................................................	21	2	96.50	96.50
..................................TGGCAAGATGTCGGCATTGCTGA.............................................................................................	23	2	84.00	84.00
..................................TGGCAAGATGTCGGCATAGCTT..............................................................................................	22	2	72.50	72.50
..................................TGGCAAGATGTCGGCATGGCTGA.............................................................................................	23	2	71.00	71.00
..................................TGGCAAGATGTCGGAATAGCTG..............................................................................................	22	2	71.00	71.00
..................................TGGCAAGATGTCGGCATAGCTGG.............................................................................................	23	2	70.00	70.00
..................................TGGCAAGATGTCGGCATAGCTGACG...........................................................................................	25	1	101.00	101.00
..................................TGGCAAGATGTCGGCATAGCTGATT...........................................................................................	25	1	97.00	97.00
..................................TGGCAAGATGTCGGCATAGCTGACGTT.........................................................................................	27	1	96.00	96.00
..................................TGGCACGATGTCGGCATAGCTGA.............................................................................................	23	2	43.00	43.00
..................................TGGCAAGACGTCGGCATAGCTGA.............................................................................................	23	2	41.50	41.50
..................................TGCCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	38.50	38.50
..................................TGGCAACATGTCGGCATAGCTGA.............................................................................................	23	2	30.00	30.00
..................................TGACAAGATGTCGGCATAGCTGA.............................................................................................	23	2	28.00	28.00
..................................TGGCAAAATGTCGGCATAGCTGA.............................................................................................	23	2	28.00	28.00
..................................TGTCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	27.50	27.50
..................................TGGCAAGATGTCGGCATAGCTGTT............................................................................................	24	1	53.00	53.00
..................................TGGCAAGAAGTCGGCATAGCTGA.............................................................................................	23	2	25.50	25.50
..................................TGGCAAGATGCCGGCATAGCTGA.............................................................................................	23	2	24.00	24.00
..................................TGGCAGGATGTCGGCATAGCTGA.............................................................................................	23	2	21.50	21.50
..................................TGGCAAGATGTCGGCATAG.................................................................................................	19	2	21.50	21.50
..................................TGGCAAGATGTCGGCATCGCTG..............................................................................................	22	2	21.00	21.00
..................................TGGCATGATGTCGGCATAGCTGA.............................................................................................	23	2	21.00	21.00
..................................TGGCAAGATCTCGGCATAGCTGA.............................................................................................	23	2	20.50	20.50
..................................TGGCAAGATGTCGGCATAGCTGAC............................................................................................	24	2	19.00	19.00
..................................TGGCAAGATGTCGGCATAGCCGA.............................................................................................	23	2	18.00	18.00
..................................TGGCCAGATGTCGGCATAGCTGA.............................................................................................	23	2	17.50	17.50
.................................CTGGCAAGATGTCGGCATAGCTGA.............................................................................................	24	2	17.50	17.50
..................................TGGCAAGATGTCGGAATAGC................................................................................................	20	2	16.50	16.50
..................................TGGCAAGATGTCGGCATAGCTGAAT...........................................................................................	25	1	28.00	28.00
..................................TGGCAAGATGTCGGCATCGCT...............................................................................................	21	2	14.00	14.00
..................................TGGCAAGAGGTCGGCATAGCTGA.............................................................................................	23	2	14.00	14.00
..................................TGGCAAGATGTCGGCATAGCTGAAA...........................................................................................	25	2	14.00	14.00
..................................TGGCAAGATGTCGGCCTAGCTGA.............................................................................................	23	2	13.50	13.50
..................................TGGCAAGATGTCGGCATACCTGA.............................................................................................	23	2	13.50	13.50
..................................TGGCAAGATGTCCGCATAGCTGA.............................................................................................	23	2	12.50	12.50
..................................TGGCAAGATGTCGGCATAGCTCA.............................................................................................	23	2	12.00	12.00
..................................TGGCAAGATGTCGGCACAGCTGA.............................................................................................	23	2	12.00	12.00
..................................TGGCAAGATGTCGGCATTGCTG..............................................................................................	22	2	11.50	11.50
..................................TGGCAAGATGTCGGCATAGCTGATTT..........................................................................................	26	1	22.00	22.00
..................................TGGCAAGATGTCGGCATGGCTG..............................................................................................	22	2	11.00	11.00
..................................TGGCAAGATGTAGGCATAGCTGA.............................................................................................	23	2	11.00	11.00
..................................TGGCAAGATGTCAGCATAGCTGA.............................................................................................	23	2	10.00	10.00
..................................TAGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	9.50	9.50
..................................TCGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	9.50	9.50
..................................CGGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	9.50	9.50
..................................TGGCAAGATGTTGGCATAGCTGA.............................................................................................	23	2	9.50	9.50
...................................GGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	9.00	9.00
..................................................................................CGCTATGCTGCATCTAGTCAGT-.............................................	22	1	18.00	18.00
..................................TGGCAAGATGTCGGAATAGCTGAT............................................................................................	24	2	9.00	9.00
..................................TGCCAAGATGTCGGCATAGCTG..............................................................................................	22	2	9.00	9.00
..................................TGGCAAGATATCGGCATAGCTGA.............................................................................................	23	2	8.50	8.50
..................................TGGCAAGATGTCGGCATTGCT...............................................................................................	21	2	8.50	8.50
..................................TGGCAAGCTGTCGGCATAGCTGA.............................................................................................	23	2	8.50	8.50
..................................TGGAAAGATGTCGGCATAGCTGA.............................................................................................	23	2	8.50	8.50
..................................TGGCAAGATGTCGCCATAGCTGA.............................................................................................	23	2	8.50	8.50
..................................TGGCAAGATGTCGGCATAGATGA.............................................................................................	23	2	8.50	8.50
...................................TGCAAGATGTCGGCATAGCTGA.............................................................................................	22	2	8.00	8.00
..................................TGGCAAGATGTCGACATAGCTGA.............................................................................................	23	2	8.00	8.00
..................................TGGCAAGGTGTCGGCATAGCTGA.............................................................................................	23	2	8.00	8.00
..................................TGGCAAGATGTCGGTATAGCTGA.............................................................................................	23	2	7.50	7.50
..................................TGGCAATATGTCGGCATAGCTGA.............................................................................................	23	2	7.00	7.00
..................................TGGCAAGATGTCGGCATGGCT...............................................................................................	21	2	6.50	6.50
..................................TGGCAAGATGTCGGCATATCTGA.............................................................................................	23	2	6.00	6.00
..................................TGGCACGATGTCGGCATAGCTG..............................................................................................	22	2	6.00	6.00
..................................TGGCAAGATTTCGGCATAGCTGA.............................................................................................	23	2	6.00	6.00
..................................TGGCAAGATGTCGGAATAGCTGT.............................................................................................	23	2	6.00	6.00
..................................TGGCAAGATGTCGGCGTAGCTGA.............................................................................................	23	2	5.50	5.50
..................................TGTCAAGATGTCGGCATAGCTG..............................................................................................	22	2	5.50	5.50
..................................TGGCAAGATGTCGGCATAGCTGCT............................................................................................	24	1	11.00	11.00
..................................TGGCAAGATGTCGGCATCGCTGAT............................................................................................	24	1	11.00	11.00
..................................TTGCAAGATGTCGGCATAGCTGA.............................................................................................	23	2	5.50	5.50
..................................TGGTAAGATGTCGGCATAGCTGA.............................................................................................	23	2	5.50	5.50
..................................TGGCAAGATGTCGGCATAGTTGA.............................................................................................	23	2	5.50	5.50
..................................TGGCAAGATGTCTGCATAGCTGA.............................................................................................	23	2	5.00	5.00
..................................TGGCAAGATGTCGGCATAGCTGGT............................................................................................	24	1	10.00	10.00
..................................TGGCAACATGTCGGCATAGCTG..............................................................................................	22	2	5.00	5.00
..................................TGGCAAGACGTCGGCATAGCT...............................................................................................	21	2	5.00	5.00
..................................TGGCGAGATGTCGGCATAGCTGA.............................................................................................	23	2	5.00	5.00
..................................TGGCAAGATGTCGTCATAGCTGA.............................................................................................	23	2	4.50	4.50
..................................TGGCAAGATGTCGGCATAGCCG..............................................................................................	22	2	4.50	4.50
..................................TGGCAAGACGTCGGCATAGCTG..............................................................................................	22	2	4.50	4.50
..................................TGGCAAGATGTCGGAATAGCTGAA............................................................................................	24	2	4.50	4.50
....................................TCAAGATGTCGGCATAGCTGA.............................................................................................	21	2	4.50	4.50
..................................TGACAAGATGTCGGCATAGCT...............................................................................................	21	2	4.50	4.50
..................................TGCCAAGATGTCGGCATAGCT...............................................................................................	21	2	4.00	4.00
..................................TGGCAAGATGTCGGCATAGCTTA.............................................................................................	23	2	4.00	4.00
..................................TGACAAGATGTCGGCATAGCTG..............................................................................................	22	2	4.00	4.00
..................................TGGCAAGATGTCGGCATGGCTGAT............................................................................................	24	1	8.00	8.00
..................................TGGCAAGATxTCGGCATAGCTGA.............................................................................................	22	2	4.00	4.00
..................................TGGCACGATGTCGGCATAGCTGAT............................................................................................	24	1	7.00	7.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image