dme-mir-317- Best orthologs

dme-mir-317	chr3R:5916848-5916939 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 5916903-5916923
   star strand at position 5916861-5916882
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:5916833-5916954 +		1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCTGCACCAC--------------A
droSim1	chr3R:15459127-15459249 -	LASTZ	1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTTGCTGCTCCAC--------------A
droSec1	super_0:15996573-15996694 -	LASTZ	1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCTGCTCCAC--------------A
droYak2	chr3R:9963959-9964079 +	LASTZ	1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------
droEre2	scaffold_4770:15683457-15683577 -	LASTZ	1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------
droEug1	scf7180000409470:249850-249971 +	LASTZ	4	AAGCA-A-------AATTTTCA-------------TATGCATCTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCATTGGCCGTTC-TTGCATCC-TT-GCAGCTCCAT---------------
droBia1	scf7180000302402:3413519-3413639 +	LASTZ	4	AAGCG-C-------CACTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAACTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--ACGCATCC-TT-GCACCCTTGC---------------
droTak1	scf7180000415245:189216-189336 -	LASTZ	4	AAGCA-A-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--CGGCATCC-TT-GCAGCTCCAG---------------
droEle1	scf7180000490967:813799-813919 -	LASTZ	4	AAGCT-G-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droRho1	scf7180000779228:16083-16203 +	LASTZ	4	AAGCT-A-------AATTTTCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droFic1	scf7180000454104:911442-911563 -	LASTZ	4	AAGCT-G-------ATTGTCCA-------------TGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATACAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droKik1	scf7180000302706:2168719-2168840 +	LASTZ	4	AAGC-----------TTTTCCA-------------TGTGCAACTGCCAGTGGGATAC-ACCCTGTGCTCGCTTTGAA-AAACCGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTT-TAGCATAA-TT-TCAACTGCAGC---------GA--G
droAna3	scaffold_13340:6479980-6480089 +	LASTZ	1	AAGCT-C-------ATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------
droBip1	scf7180000396708:2369070-2369182 -	LASTZ	4	GAAAA-G-------CTCCTTTG-------------TGTGCATCTGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------
dp4	chr2:5029980-5030116 -	LASTZ	1	AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAGC---------AACAA
droPer1	super_19:735499-735629 -	LASTZ	1	AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAG---------------
droWil1	scaffold_181089:11180051-11180176 -	LASTZ	1	AAGCT-T-TCTAGATTCTT--C-------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTGCATCC-AT-GCAACACCA----------------
droVir3	scaffold_12855:2698510-2698638 -	LASTZ	1	AAGC-----------TTTTTCA--------------GTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT---GGCAGCCAAT-GCAACAATTGCAACAACTGCAAC-A
droMoj3	scaffold_6540:11898843-11898966 -	LASTZ	1	GAGTAAGC------TTTCTCTC-------------TGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTTT-ATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAAT-GCAACAACAGC---------A---A
droGri2	scaffold_14624:2253109-2253242 +	LASTZ	1	AAAAA-G-------CTTTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGCAC-AT-GCAACAACAACAACAAGAGCA---A

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCTGCACCAC--------------A
droSim1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTTGCTGCTCCAC--------------A
droSec1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCTGCTCCAC--------------A
droYak2	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------
droEre2	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------
droEug1	AAGCA-A-------AATTTTCA-------------TATGCATCTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCATTGGCCGTTC-TTGCATCC-TT-GCAGCTCCAT---------------
droBia1	AAGCG-C-------CACTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAACTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--ACGCATCC-TT-GCACCCTTGC---------------
droTak1	AAGCA-A-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--CGGCATCC-TT-GCAGCTCCAG---------------
droEle1	AAGCT-G-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droRho1	AAGCT-A-------AATTTTCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droFic1	AAGCT-G-------ATTGTCCA-------------TGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATACAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droKik1	AAGC-----------TTTTCCA-------------TGTGCAACTGCCAGTGGGATAC-ACCCTGTGCTCGCTTTGAA-AAACCGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTT-TAGCATAA-TT-TCAACTGCAGC---------GA--G
droAna3	AAGCT-C-------ATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------
droBip1	GAAAA-G-------CTCCTTTG-------------TGTGCATCTGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------
dp4	AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAGC---------AACAA
droPer1	AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAG---------------
droWil1	AAGCT-T-TCTAGATTCTT--C-------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTGCATCC-AT-GCAACACCA----------------
droVir3	AAGC-----------TTTTTCA--------------GTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT---GGCAGCCAAT-GCAACAATTGCAACAACTGCAAC-A
droMoj3	GAGTAAGC------TTTCTCTC-------------TGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTTT-ATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAAT-GCAACAACAGC---------A---A
droGri2	AAAAA-G-------CTTTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGCAC-AT-GCAACAACAACAACAAGAGCA---A

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTTGCTGCTCCAC--------------A	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	1829110.00	56.00	1688359.00	133801.00	6894.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	934481.00	9.00	798867.00	127913.00	7692.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	378362.00	12.00	344492.00	32554.00	1304.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	269483.00	3.00	215584.00	52390.00	1506.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	131200.00	51.00	115397.00	15234.00	518.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	110938.00	5.00	105350.00	4817.00	766.00
............................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	88821.00	0.00	70440.00	17316.00	1065.00
............................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	75683.00	0.00	67208.00	7905.00	570.00
............................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	73312.00	1.00	50975.00	22086.00	250.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	43865.00	3.00	35089.00	8461.00	312.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	41827.00	0.00	33801.00	7865.00	161.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	24821.00	1.00	22394.00	2343.00	83.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	14952.00	0.00	13616.00	1253.00	83.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	14217.00	0.00	13093.00	1083.00	41.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	13970.00	1.00	13171.00	731.00	67.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	9587.00	0.00	8873.00	682.00	32.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	9327.00	0.00	8615.00	674.00	38.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	8696.00	0.00	7956.00	702.00	38.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	7321.00	0.00	6593.00	687.00	41.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	6572.00	0.00	6007.00	527.00	38.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	5945.00	0.00	5296.00	635.00	14.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	5573.00	0.00	4771.00	781.00	21.00
............................................................................................TGAACACAGCTGGTGGTAC...................................................	19	1	4977.00	0.00	4740.00	211.00	26.00
............................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	4716.00	0.00	4018.00	677.00	21.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	4461.00	0.00	4077.00	360.00	24.00
............................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	4304.00	0.00	3609.00	669.00	26.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	3896.00	0.00	3625.00	255.00	16.00
............................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	3445.00	0.00	2853.00	570.00	22.00
............................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	3294.00	0.00	2973.00	310.00	11.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	3258.00	0.00	3040.00	203.00	15.00
............................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	3253.00	0.00	2963.00	279.00	11.00
............................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	3159.00	0.00	2939.00	205.00	15.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	2922.00	1.00	2682.00	226.00	13.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	2886.00	0.00	2662.00	213.00	11.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	2801.00	0.00	2418.00	371.00	12.00
............................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	2569.00	0.00	2288.00	249.00	32.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	2416.00	0.00	2199.00	207.00	10.00
............................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	2300.00	0.00	2153.00	135.00	12.00
............................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	2292.00	0.00	2087.00	191.00	14.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	2264.00	0.00	2115.00	138.00	11.00
............................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	2102.00	0.00	1808.00	269.00	25.00
............................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	2048.00	0.00	1779.00	245.00	24.00
............................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	1985.00	0.00	1433.00	543.00	9.00
............................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	1842.00	0.00	1681.00	151.00	10.00
............................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	1822.00	0.00	1697.00	113.00	12.00
............................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	1762.00	0.00	1647.00	111.00	4.00
............................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	1752.00	0.00	1474.00	268.00	10.00
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	1648.00	0.00	1503.00	143.00	2.00
............................................................................................TGAACACAGCTGGTGGAATCCAGT..............................................	24	1	1561.00	0.00	1316.00	233.00	12.00
............................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	1542.00	0.00	1181.00	350.00	11.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	1528.00	0.00	1413.00	110.00	5.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	1504.00	0.00	1386.00	113.00	5.00
............................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	1440.00	0.00	1343.00	90.00	7.00
............................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	1414.00	0.00	1265.00	135.00	14.00
............................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	1412.00	0.00	1283.00	119.00	10.00
............................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	1359.00	0.00	1288.00	66.00	5.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	1313.00	0.00	1198.00	110.00	5.00
............................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	1214.00	0.00	1011.00	192.00	11.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	1213.00	0.00	1089.00	117.00	7.00
............................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	1204.00	0.00	1012.00	180.00	12.00
............................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	1179.00	0.00	1053.00	115.00	11.00
............................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	1158.00	0.00	1012.00	144.00	2.00
............................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	1129.00	0.00	1061.00	62.00	6.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	1100.00	0.00	999.00	100.00	1.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	1065.00	0.00	956.00	106.00	3.00
............................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	1056.00	0.00	964.00	89.00	3.00
............................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	1040.00	0.00	927.00	113.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	1018.00	0.00	881.00	130.00	7.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	1007.00	0.00	957.00	49.00	1.00
............................................................................................TGAACACAGCTGGTCGTATCCAGT..............................................	24	1	1004.00	0.00	886.00	102.00	16.00
............................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	995.00	0.00	761.00	226.00	8.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	989.00	0.00	911.00	75.00	3.00
............................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	973.00	0.00	801.00	167.00	5.00
............................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	972.00	0.00	897.00	64.00	11.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	963.00	0.00	847.00	76.00	40.00
............................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	953.00	0.00	875.00	33.00	45.00
............................................................................................TGAACACAGCTGGTGGTATCCAGAA.............................................	25	1	945.00	0.00	581.00	359.00	5.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	931.00	0.00	867.00	62.00	2.00
............................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	928.00	0.00	816.00	101.00	11.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	918.00	0.00	655.00	259.00	4.00
............................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	905.00	0.00	847.00	54.00	4.00
............................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	890.00	0.00	813.00	69.00	8.00
............................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	888.00	0.00	763.00	117.00	8.00
............................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	888.00	0.00	745.00	140.00	3.00
............................................................................................TGAACACAGCTGGTGGTAG...................................................	19	1	876.00	0.00	796.00	72.00	8.00
............................................................................................TGAACACACCTGGTGGTATCCAGT..............................................	24	1	858.00	0.00	758.00	87.00	13.00
............................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	852.00	0.00	765.00	82.00	5.00
............................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	838.00	0.00	782.00	53.00	3.00
............................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	817.00	0.00	689.00	122.00	6.00
............................................................................................TGAACACAGCTxxTGGTATC..................................................	18	1	814.00	0.00	739.00	74.00	1.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	814.00	0.00	747.00	65.00	2.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	796.00	0.00	684.00	108.00	4.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	792.00	0.00	731.00	58.00	3.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	766.00	0.00	698.00	65.00	3.00
............................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	713.00	0.00	653.00	58.00	2.00
............................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	708.00	0.00	599.00	101.00	8.00
............................................................................................TGAACACAGCTTGTGGTATCCAGT..............................................	24	1	698.00	0.00	584.00	110.00	4.00
............................................................................................TGAACACAGCTGGxGGTATCC.................................................	20	1	691.00	0.00	658.00	31.00	2.00
............................................................................................TGAACACAGCTGCTGGTATCCAGT..............................................	24	1	688.00	0.00	613.00	60.00	15.00
............................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	683.00	0.00	657.00	21.00	5.00
............................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	678.00	0.00	636.00	36.00	6.00

droSec1

AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCTGCTCCAC--------------A	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	103780.00	7099.00	356.00	96325.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	35851.00	3072.00	111.00	32668.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	33693.00	1611.00	54.00	32028.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	31980.00	2519.00	100.00	29361.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	3111.00	5.00	6.00	3100.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	2202.00	299.00	4.00	1899.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	2171.00	163.00	1.00	2007.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	1897.00	306.00	63.00	1528.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1498.00	138.00	1.00	1359.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1131.00	105.00	2.00	1024.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	1077.00	168.00	27.00	882.00
........................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	763.00	340.00	5.00	418.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	643.00	105.00	2.00	536.00
.................................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	596.00	124.00	10.00	462.00
............................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	382.00	37.00	1.00	344.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	367.00	72.00	1.00	294.00
............................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	340.00	79.00	0.00	261.00
............................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	293.00	0.00	0.00	293.00
...........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	263.00	29.00	1.00	233.00
............................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	219.00	20.00	0.00	199.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	198.00	15.00	2.00	181.00
...........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	190.00	10.00	0.00	180.00
.................................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	188.00	70.00	1.00	117.00
............................................................................................TGAACACAGCTGGTGGTAACC.................................................	21	1	168.00	48.00	0.00	120.00
............................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	168.00	0.00	0.00	168.00
............................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	161.00	58.00	1.00	102.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	159.00	8.00	1.00	150.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	158.00	7.00	0.00	151.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	158.00	18.00	1.00	139.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	156.00	9.00	0.00	147.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	153.00	11.00	3.00	139.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	146.00	21.00	1.00	124.00
............................................................................................TGAACACAGCTGGTGGTATAT.................................................	21	1	145.00	42.00	0.00	103.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	144.00	18.00	0.00	126.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	141.00	7.00	0.00	134.00
............................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	133.00	7.00	0.00	126.00
............................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	131.00	0.00	0.00	131.00
............................................................................................TGAACACAGATGGTGGTATCC.................................................	21	1	129.00	3.00	0.00	126.00
...........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	125.00	6.00	1.00	118.00
............................................................................................TGAACACAGCTGGTGGTATAA.................................................	21	1	117.00	37.00	2.00	78.00
............................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	115.00	7.00	0.00	108.00
............................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	112.00	3.00	0.00	109.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	111.00	8.00	0.00	103.00
............................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	108.00	11.00	0.00	97.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	108.00	8.00	0.00	100.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	107.00	14.00	1.00	92.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	102.00	11.00	0.00	91.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	98.00	10.00	0.00	88.00
............................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	93.00	4.00	0.00	89.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	93.00	4.00	0.00	89.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	92.00	9.00	0.00	83.00
............................................................................................TTAACACAGCTGGTGGTATCC.................................................	21	1	91.00	3.00	0.00	88.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	89.00	5.00	1.00	83.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	87.00	10.00	0.00	77.00
............................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	86.00	3.00	1.00	82.00
............................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	85.00	4.00	1.00	80.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	83.00	4.00	0.00	79.00
............................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	82.00	0.00	0.00	82.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	82.00	11.00	0.00	71.00
............................................................................................TGAxxACAGCTGGTGGTATCC.................................................	19	1	81.00	7.00	2.00	72.00
............................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	81.00	3.00	1.00	77.00
............................................................................................AGAACACAGCTGGTGGTATCC.................................................	21	1	78.00	0.00	0.00	78.00
............................................................................................TGAGCACAGCTGGTGGTATCCA................................................	22	1	78.00	4.00	0.00	74.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	76.00	5.00	0.00	71.00
............................................................................................TGAACACAGCTGCTGGTAT...................................................	19	1	74.00	7.00	0.00	67.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	74.00	10.00	0.00	64.00
............................................................................................TGAACACAGCTGGTGGTACC..................................................	20	1	71.00	26.00	0.00	45.00
............................................................................................TGAACACAGCTxGTGGTATCCA................................................	21	1	70.00	7.00	0.00	63.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	69.00	10.00	1.00	58.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	69.00	3.00	0.00	66.00
............................................................................................TGAACACAGCTGTTGGTAT...................................................	19	1	68.00	8.00	1.00	59.00
............................................................................................TGAACACAACTGGTGGTATCC.................................................	21	1	67.00	3.00	0.00	64.00
............................................................................................TGAACACAGCTGGTGGTAC...................................................	19	1	66.00	14.00	0.00	52.00
............................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	66.00	3.00	2.00	61.00
............................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	63.00	5.00	0.00	58.00
............................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	62.00	4.00	0.00	58.00
............................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	60.00	6.00	0.00	54.00
............................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	1	60.00	6.00	0.00	54.00
............................................................................................TGAACACAGCTGGTGGTAACCA................................................	22	1	60.00	27.00	0.00	33.00
............................................................................................TGAACAAAGCTGGTGGTATCCA................................................	22	1	59.00	1.00	0.00	58.00
............................................................................................TGAACACAGCTTGTGGTATCCA................................................	22	1	59.00	5.00	0.00	54.00
............................................................................................TGAACAAAGCTGGTGGTATC..................................................	20	1	58.00	0.00	0.00	58.00
............................................................................................TGAACACAGCTGGTGGTAAC..................................................	20	1	58.00	20.00	0.00	38.00
............................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	57.00	4.00	0.00	53.00
............................................................................................TGAACAAAGCTGGTGGTAT...................................................	19	1	56.00	0.00	0.00	56.00
............................................................................................TGAATACAGCTGGTGGTATCC.................................................	21	1	56.00	2.00	1.00	53.00
............................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	56.00	4.00	1.00	51.00
.................................................TGGGATAC-ACCCTGTGCTCGCTT.........................................................................................	23	1	55.00	10.00	1.00	44.00
...........................................................................................CTGAACACAGCTGGTGGTATC..................................................	21	1	55.00	3.00	0.00	52.00
............................................................................................TGAACACCGCTGGTGGTATCC.................................................	21	1	55.00	7.00	1.00	47.00
............................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	54.00	12.00	0.00	42.00
............................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	54.00	7.00	1.00	46.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	54.00	3.00	0.00	51.00
............................................................................................TGAxxACAGCTGGTGGTATCCA................................................	20	1	53.00	5.00	1.00	47.00
............................................................................................TGAACACAGCTGGTGATATCC.................................................	21	1	52.00	3.00	1.00	48.00
............................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	52.00	12.00	1.00	39.00
............................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	51.00	8.00	1.00	42.00
.............................................................................................GAACACAGCTGGTGGTATCC.................................................	20	1	51.00	4.00	1.00	46.00
............................................................................................TCAACACAGCTGGTGGTATCC.................................................	21	1	51.00	7.00	0.00	44.00
............................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	50.00	4.00	0.00	46.00
............................................................................................TGAACACAGATGGTGGTAT...................................................	19	1	49.00	0.00	0.00	49.00

droYak2

AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	295874.00	19.00	8462.00	1965.00	17034.00	268394.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	278773.00	6.00	91.00	61.00	157.00	278458.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	63966.00	5.00	3705.00	1020.00	7247.00	51989.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	54301.00	0.00	16.00	34.00	38.00	54213.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	27508.00	4.00	1106.00	541.00	2156.00	23701.00
............................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	27184.00	0.00	1.00	0.00	1.00	27182.00
............................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	26870.00	0.00	0.00	0.00	0.00	26870.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	13913.00	1.00	9.00	15.00	20.00	13868.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	13818.00	0.00	3825.00	608.00	7588.00	1797.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	6177.00	0.00	5.00	2.00	6.00	6164.00
............................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	4876.00	0.00	1.00	2.00	1.00	4872.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	4422.00	0.00	114.00	82.00	256.00	3970.00
............................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	3273.00	0.00	0.00	0.00	1.00	3272.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	2984.00	0.00	14.00	15.00	127.00	2828.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	2397.00	0.00	7.00	0.00	38.00	2352.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	2337.00	0.00	22.00	1.00	128.00	2186.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	1432.00	0.00	1.00	2.00	27.00	1402.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	1426.00	0.00	2.00	5.00	2.00	1417.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1401.00	0.00	7.00	0.00	9.00	1385.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	1373.00	0.00	1.00	2.00	7.00	1363.00
............................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	1279.00	0.00	1.00	0.00	1.00	1277.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1272.00	0.00	205.00	52.00	361.00	654.00
............................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	945.00	0.00	3.00	1.00	8.00	933.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	918.00	3.00	369.00	85.00	457.00	4.00
............................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	814.00	0.00	0.00	0.00	0.00	814.00
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	758.00	0.00	12.00	12.00	58.00	676.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	758.00	0.00	38.00	11.00	124.00	585.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	747.00	0.00	11.00	3.00	16.00	717.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	655.00	0.00	13.00	2.00	13.00	627.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	654.00	0.00	125.00	25.00	226.00	278.00
............................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	645.00	0.00	0.00	1.00	1.00	643.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	619.00	0.00	37.00	16.00	106.00	460.00
............................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	616.00	0.00	0.00	0.00	0.00	616.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	603.00	0.00	101.00	1.00	200.00	301.00
............................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	600.00	0.00	0.00	0.00	1.00	599.00
............................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	574.00	0.00	1.00	0.00	1.00	572.00
............................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	532.00	0.00	0.00	0.00	0.00	532.00
............................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	522.00	0.00	3.00	1.00	18.00	500.00
............................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	512.00	0.00	0.00	0.00	0.00	512.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	491.00	0.00	9.00	3.00	29.00	450.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	485.00	0.00	0.00	0.00	0.00	485.00
............................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	480.00	0.00	0.00	1.00	0.00	479.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	473.00	0.00	95.00	54.00	247.00	77.00
............................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	461.00	0.00	1.00	1.00	11.00	448.00
............................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	421.00	0.00	0.00	0.00	0.00	421.00
............................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	387.00	0.00	1.00	0.00	0.00	386.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	379.00	1.00	25.00	2.00	82.00	269.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	378.00	0.00	24.00	5.00	25.00	324.00
............................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	370.00	0.00	0.00	0.00	0.00	370.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	365.00	0.00	25.00	1.00	105.00	234.00
........................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	363.00	0.00	59.00	87.00	199.00	18.00
............................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	358.00	0.00	7.00	0.00	7.00	344.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	357.00	0.00	0.00	0.00	2.00	355.00
............................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	353.00	0.00	4.00	1.00	15.00	333.00
............................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	352.00	0.00	0.00	0.00	0.00	352.00
............................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	340.00	0.00	0.00	4.00	2.00	334.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	339.00	0.00	0.00	0.00	1.00	338.00
............................................................................................TGAACACAGCTGGGGGTATCCAGG..............................................	24	1	336.00	0.00	0.00	0.00	0.00	336.00
............................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	305.00	0.00	0.00	0.00	2.00	303.00
............................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	305.00	0.00	0.00	1.00	0.00	304.00
............................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	294.00	0.00	0.00	0.00	0.00	294.00
............................................................................................TGAACACAGCTGGGGGTATCCAGC..............................................	24	1	287.00	0.00	0.00	0.00	0.00	287.00
............................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	286.00	0.00	0.00	0.00	5.00	281.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	283.00	0.00	6.00	3.00	4.00	270.00
............................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	278.00	0.00	3.00	7.00	11.00	257.00
............................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	277.00	0.00	1.00	2.00	4.00	270.00
............................................................................................TGAACACAGCTGGTCGTATCCAGT..............................................	24	1	275.00	0.00	0.00	0.00	0.00	275.00
............................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	275.00	0.00	0.00	0.00	1.00	274.00
............................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	267.00	0.00	0.00	0.00	0.00	267.00
............................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	256.00	0.00	1.00	0.00	2.00	253.00
............................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	252.00	0.00	0.00	0.00	0.00	252.00
............................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	250.00	0.00	2.00	0.00	5.00	243.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	247.00	0.00	25.00	2.00	95.00	125.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	244.00	0.00	8.00	2.00	23.00	211.00
............................................................................................TGAACACACCTGGTGGTATCCAGT..............................................	24	1	240.00	0.00	0.00	0.00	2.00	238.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	233.00	0.00	30.00	0.00	14.00	189.00
............................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	232.00	0.00	1.00	0.00	0.00	231.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	224.00	0.00	14.00	12.00	62.00	136.00
............................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	219.00	0.00	5.00	3.00	10.00	201.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	215.00	0.00	11.00	4.00	53.00	147.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	210.00	0.00	13.00	0.00	26.00	171.00
............................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	208.00	0.00	30.00	3.00	81.00	94.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	206.00	0.00	6.00	0.00	39.00	161.00
............................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	205.00	0.00	18.00	6.00	41.00	140.00
.................................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	201.00	0.00	59.00	45.00	96.00	1.00
............................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	200.00	0.00	11.00	2.00	20.00	167.00
............................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	194.00	0.00	2.00	2.00	5.00	185.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	192.00	0.00	1.00	2.00	16.00	173.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	190.00	0.00	19.00	2.00	25.00	144.00
............................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	173.00	0.00	0.00	0.00	0.00	173.00
............................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	170.00	0.00	5.00	0.00	8.00	157.00
............................................................................................TGAACACAGCTGGTGGGATCCAGC..............................................	24	1	168.00	0.00	0.00	0.00	0.00	168.00
............................................................................................TGAACACAGCTGCTGGTATCCAGT..............................................	24	1	167.00	0.00	0.00	0.00	0.00	167.00
............................................................................................TGAACACAGCTGGTGGGATCCAGG..............................................	24	1	165.00	0.00	0.00	0.00	0.00	165.00
............................................................................................TGAACACAGCTTGTGGTATCCAGT..............................................	24	1	164.00	0.00	1.00	1.00	1.00	161.00
............................................................................................TGAACACAGCTGGTGGTGTCCAGT..............................................	24	1	160.00	0.00	0.00	0.00	1.00	159.00
............................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	157.00	0.00	16.00	6.00	46.00	89.00
............................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	157.00	0.00	2.00	1.00	5.00	149.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	153.00	0.00	0.00	0.00	9.00	144.00
............................................................................................CGAACACAGCTGGTGGTATCCAGT..............................................	24	1	147.00	0.00	0.00	0.00	0.00	147.00
............................................................................................TGAACACAGCTGGGGGTATCCAGTT.............................................	25	1	146.00	0.00	0.00	0.00	0.00	146.00

droEre2

AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	151008.00	37.00	13034.00	0.00	137937.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	47679.00	21.00	3769.00	0.00	43889.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	39325.00	36.00	1715.00	0.00	37574.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	21399.00	4.00	1878.00	0.00	19517.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	3411.00	8.00	810.00	0.00	2593.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	3128.00	1.00	137.00	0.00	2990.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	2493.00	1.00	174.00	0.00	2318.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	2114.00	9.00	241.00	0.00	1864.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1942.00	0.00	262.00	0.00	1680.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	1814.00	0.00	21.00	0.00	1793.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	1243.00	0.00	21.00	0.00	1222.00
............................................................................................TTAACACAGCTGGTGGTATCC.................................................	21	1	1229.00	0.00	7.00	0.00	1222.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1119.00	0.00	12.00	0.00	1107.00
............................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	855.00	0.00	8.00	0.00	847.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	694.00	0.00	75.00	0.00	619.00
............................................................................................TGAACACAGATGGTGGTATCC.................................................	21	1	681.00	0.00	9.00	0.00	672.00
........................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	658.00	0.00	46.00	0.00	612.00
.................................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	621.00	1.00	76.00	0.00	544.00
............................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	555.00	0.00	22.00	0.00	533.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	526.00	0.00	61.00	0.00	465.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	518.00	0.00	4.00	0.00	514.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	517.00	0.00	46.00	0.00	471.00
...........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	406.00	0.00	18.00	0.00	388.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	389.00	4.00	20.00	0.00	365.00
............................................................................................TTAACACAGCTGGTGGTATC..................................................	20	1	385.00	0.00	0.00	0.00	385.00
............................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	371.00	0.00	2.00	0.00	369.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	360.00	0.00	21.00	0.00	339.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	350.00	0.00	22.00	0.00	328.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	345.00	0.00	35.00	0.00	310.00
............................................................................................TGAACACAGCTGGTGGTATCAA................................................	22	1	341.00	0.00	5.00	0.00	336.00
............................................................................................TGAACACAGCTTGTGGTATCCA................................................	22	1	331.00	0.00	2.00	0.00	329.00
............................................................................................TTAACACAGCTGGTGGTATCCA................................................	22	1	326.00	0.00	0.00	0.00	326.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	318.00	0.00	23.00	0.00	295.00
............................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	313.00	0.00	17.00	0.00	296.00
............................................................................................TGAACACAGCTGGTTGTATCCA................................................	22	1	308.00	0.00	2.00	0.00	306.00
............................................................................................TGAACACATCTGGTGGTATC..................................................	20	1	304.00	0.00	0.00	0.00	304.00
............................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	299.00	0.00	5.00	0.00	294.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	291.00	0.00	19.00	0.00	272.00
...........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	257.00	0.00	12.00	0.00	245.00
...........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	251.00	0.00	17.00	0.00	234.00
............................................................................................TGAACACAGATGGTGGTATC..................................................	20	1	243.00	0.00	2.00	0.00	241.00
............................................................................................TGAACACATCTGGTGGTATCCA................................................	22	1	242.00	1.00	0.00	0.00	241.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	241.00	0.00	45.00	0.00	196.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	234.00	0.00	16.00	0.00	218.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	227.00	0.00	15.00	0.00	212.00
............................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	221.00	0.00	28.00	0.00	193.00
............................................................................................TGAACACAGATGGTGGTATCCA................................................	22	1	207.00	0.00	1.00	0.00	206.00
............................................................................................TGAACACAGCTGGTTGTAT...................................................	19	1	205.00	0.00	1.00	0.00	204.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	197.00	0.00	4.00	0.00	193.00
............................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	190.00	0.00	6.00	0.00	184.00
............................................................................................TTAACACAGCTGGTGGTAT...................................................	19	1	187.00	0.00	2.00	0.00	185.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	185.00	0.00	49.00	0.00	136.00
............................................................................................TGCACACAGCTGGTGGTATCC.................................................	21	1	183.00	0.00	7.00	0.00	176.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	179.00	0.00	6.00	0.00	173.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	178.00	0.00	7.00	0.00	171.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	176.00	0.00	2.00	0.00	174.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	168.00	0.00	51.00	0.00	117.00
............................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	167.00	0.00	12.00	0.00	155.00
............................................................................................TGAACACATCTGGTGGTAT...................................................	19	1	154.00	0.00	1.00	0.00	153.00
............................................................................................TGAACACAGCTTGTGGTAT...................................................	19	1	152.00	0.00	1.00	0.00	151.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	151.00	0.00	6.00	0.00	145.00
.................................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	145.00	0.00	76.00	0.00	69.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	145.00	0.00	16.00	0.00	129.00
............................................................................................TGAACACAGCTGGTGGTAA...................................................	19	2	71.50	0.00	9.00	0.00	62.50
............................................................................................TGAACACAGCTGGTGGTATACA................................................	22	1	141.00	0.00	3.00	0.00	138.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	138.00	1.00	37.00	0.00	100.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	137.00	0.00	14.00	0.00	123.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	137.00	0.00	49.00	0.00	88.00
............................................................................................TGAxxACAGCTGGTGGTATCC.................................................	19	1	134.00	0.00	5.00	0.00	129.00
............................................................................................TGAATACAGCTGGTGGTATCC.................................................	21	1	133.00	0.00	13.00	0.00	120.00
............................................................................................TGAACACAGCTGGTAGTATCC.................................................	21	1	131.00	0.00	19.00	0.00	112.00
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	129.00	0.00	3.00	0.00	126.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	127.00	0.00	12.00	0.00	115.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	127.00	0.00	12.00	0.00	115.00
............................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	123.00	0.00	9.00	0.00	114.00
............................................................................................TGAACATAGCTGGTGGTATCC.................................................	21	1	119.00	0.00	12.00	0.00	107.00
............................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	115.00	0.00	10.00	0.00	105.00
............................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	114.00	0.00	4.00	0.00	110.00
............................................................................................TGAACACAGCTGGTGATATCC.................................................	21	1	113.00	0.00	13.00	0.00	100.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	113.00	0.00	36.00	0.00	77.00
............................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	112.00	0.00	5.00	0.00	107.00
............................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	111.00	0.00	3.00	0.00	108.00
............................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	111.00	0.00	2.00	0.00	109.00
............................................................................................TGAACACAGCTGGTGGTATTC.................................................	21	1	110.00	0.00	12.00	0.00	98.00
............................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	102.00	1.00	1.00	0.00	100.00
............................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	1	100.00	0.00	25.00	0.00	75.00
............................................................................................TGAACACAGATGGTGGTAT...................................................	19	1	99.00	0.00	0.00	0.00	99.00
............................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	98.00	0.00	0.00	0.00	98.00
............................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	96.00	0.00	10.00	0.00	86.00
............................................................................................TGAACACCGCTGGTGGTATCC.................................................	21	1	95.00	0.00	11.00	0.00	84.00
.............................................................................................GAACACAGCTGGTGGTATCC.................................................	20	1	95.00	0.00	9.00	0.00	86.00
............................................................................................TGAACAAAGCTGGTGGTATCCA................................................	22	1	93.00	1.00	3.00	0.00	89.00
............................................................................................TGAACAAAGCTGGTGGTATC..................................................	20	1	93.00	0.00	2.00	0.00	91.00
............................................................................................TGAACACAGCTGGTGTTATCCA................................................	22	1	91.00	0.00	2.00	0.00	89.00
............................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	88.00	0.00	2.00	0.00	86.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	87.00	0.00	2.00	0.00	85.00
............................................................................................TGAGCACAGCTGGTGGTATCCA................................................	22	1	86.00	0.00	5.00	0.00	81.00
............................................................................................TGAACACAACTGGTGGTATCC.................................................	21	1	85.00	0.00	7.00	0.00	78.00
............................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	84.00	0.00	11.00	0.00	73.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	84.00	0.00	4.00	0.00	80.00
............................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	84.00	0.00	16.00	0.00	68.00

droEug1

AAGCA-A-------AATTTTCA-------------TATGCATCTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCATTGGCCGTTC-TTGCATCC-TT-GCAGCTCCAT---------------

Size

Hit Count

Total Norm

droBia1

AAGCG-C-------CACTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAACTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--ACGCATCC-TT-GCACCCTTGC---------------

Size

Hit Count

Total Norm

droTak1

AAGCA-A-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--CGGCATCC-TT-GCAGCTCCAG---------------

Size

Hit Count

Total Norm

droEle1

AAGCT-G-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A

Size

Hit Count

Total Norm

droRho1

AAGCT-A-------AATTTTCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A

Size

Hit Count

Total Norm

droFic1

AAGCT-G-------ATTGTCCA-------------TGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATACAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A

Size

Hit Count

Total Norm

droKik1

AAGC-----------TTTTCCA-------------TGTGCAACTGCCAGTGGGATAC-ACCCTGTGCTCGCTTTGAA-AAACCGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTT-TAGCATAA-TT-TCAACTGCAGC---------GA--G

Size

Hit Count

Total Norm

droAna3

AAGCT-C-------ATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	77559.00	4821.00	63644.00	9080.00	14.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	31530.00	1079.00	29093.00	1348.00	10.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	29367.00	2375.00	22750.00	4235.00	7.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	20840.00	1973.00	13767.00	5097.00	3.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	3127.00	296.00	2652.00	179.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	2124.00	320.00	1278.00	526.00	0.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	1969.00	159.00	1388.00	420.00	2.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1281.00	122.00	1003.00	156.00	0.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	1165.00	208.00	670.00	287.00	0.00
............................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	1074.00	41.00	1021.00	12.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	1024.00	92.00	829.00	103.00	0.00
............................................................................................TGAACACAGATGGTGGTATCC.................................................	21	1	783.00	40.00	725.00	18.00	0.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	697.00	7.00	575.00	115.00	0.00
.................................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	565.00	38.00	481.00	46.00	0.00
............................................................................................TGAACACATCTGGTGGTATCCA................................................	22	1	526.00	8.00	517.00	1.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	431.00	14.00	411.00	6.00	0.00
............................................................................................TGAACACATCTGGTGGTATC..................................................	20	1	375.00	23.00	346.00	6.00	0.00
............................................................................................TGAACACAGATGGTGGTATCCA................................................	22	1	359.00	6.00	348.00	5.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	317.00	62.00	200.00	55.00	0.00
............................................................................................TTAACACAGCTGGTGGTATCC.................................................	21	1	293.00	23.00	262.00	8.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	289.00	19.00	255.00	15.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	287.00	33.00	240.00	14.00	0.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	285.00	2.00	266.00	17.00	0.00
............................................................................................TGAACACAGATGGTGGTATC..................................................	20	1	278.00	19.00	252.00	7.00	0.00
...........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	277.00	5.00	252.00	19.00	1.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	275.00	8.00	170.00	97.00	0.00
............................................................................................TGAACACATCTGGTGGTAT...................................................	19	1	271.00	27.00	241.00	3.00	0.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	271.00	13.00	138.00	120.00	0.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	243.00	4.00	224.00	15.00	0.00
........................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	225.00	66.00	113.00	46.00	0.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	218.00	22.00	191.00	5.00	0.00
............................................................................................TGAACACAGATGGTGGTAT...................................................	19	1	206.00	18.00	173.00	15.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCAA................................................	22	1	205.00	12.00	191.00	2.00	0.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	188.00	16.00	136.00	36.00	0.00
.................................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	185.00	108.00	24.00	53.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	184.00	16.00	162.00	6.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	179.00	20.00	153.00	6.00	0.00
............................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	174.00	4.00	154.00	16.00	0.00
............................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	160.00	54.00	54.00	51.00	1.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	152.00	2.00	65.00	85.00	0.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	146.00	16.00	120.00	10.00	0.00
............................................................................................TGAACACAGCTGGTGGTAG...................................................	19	1	144.00	5.00	115.00	24.00	0.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	142.00	17.00	23.00	102.00	0.00
............................................................................................TTAACACAGCTGGTGGTATCCA................................................	22	1	130.00	5.00	125.00	0.00	0.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	130.00	1.00	110.00	19.00	0.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	128.00	1.00	89.00	38.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCTA................................................	22	1	127.00	11.00	110.00	5.00	1.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	123.00	3.00	63.00	57.00	0.00
............................................................................................TGAACACAGCTTGTGGTATCCA................................................	22	1	121.00	7.00	113.00	1.00	0.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	118.00	7.00	23.00	88.00	0.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	118.00	5.00	99.00	14.00	0.00
............................................................................................TGGACACAGCTGGTGGTATCCA................................................	22	1	115.00	0.00	112.00	3.00	0.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	113.00	19.00	73.00	21.00	0.00
............................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	113.00	5.00	47.00	61.00	0.00
...........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	111.00	2.00	104.00	5.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	108.00	28.00	54.00	26.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	108.00	5.00	102.00	1.00	0.00
............................................................................................TGGACACAGCTGGTGGTATC..................................................	20	1	107.00	1.00	99.00	7.00	0.00
............................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	105.00	16.00	83.00	6.00	0.00
............................................................................................TTAACACAGCTGGTGGTATC..................................................	20	1	105.00	4.00	100.00	1.00	0.00
............................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	102.00	9.00	72.00	21.00	0.00
............................................................................................TGAACACAGCTGGTGGCATCCA................................................	22	1	101.00	4.00	80.00	17.00	0.00
............................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	100.00	3.00	30.00	67.00	0.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	99.00	4.00	94.00	1.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCGA................................................	22	1	98.00	9.00	85.00	4.00	0.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	98.00	13.00	66.00	19.00	0.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	95.00	5.00	67.00	23.00	0.00
............................................................................................TGAACACAGCTGGTGGCAT...................................................	19	1	94.00	4.00	30.00	60.00	0.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	94.00	30.00	52.00	12.00	0.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	93.00	1.00	57.00	35.00	0.00
............................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	92.00	6.00	76.00	10.00	0.00
............................................................................................TGAACACAGCTGGTGGTATTC.................................................	21	1	92.00	4.00	66.00	22.00	0.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	90.00	4.00	77.00	9.00	0.00
............................................................................................TGAACACAGCTGGTAGTATCC.................................................	21	1	88.00	1.00	72.00	15.00	0.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	85.00	15.00	51.00	19.00	0.00
............................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	83.00	5.00	62.00	16.00	0.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	82.00	4.00	65.00	13.00	0.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	80.00	16.00	35.00	29.00	0.00
............................................................................................TGAACACAGCTTGTGGTAT...................................................	19	1	79.00	5.00	67.00	7.00	0.00
............................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	77.00	2.00	59.00	16.00	0.00
............................................................................................TGAACACAGCTGGTTGTATCCA................................................	22	1	77.00	1.00	76.00	0.00	0.00
............................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	76.00	0.00	63.00	13.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	76.00	4.00	71.00	1.00	0.00
............................................................................................TGAACACAGCTGGTGGTATG..................................................	20	1	75.00	4.00	59.00	12.00	0.00
............................................................................................TGAGCACAGCTGGTGGTATCCA................................................	22	1	73.00	2.00	67.00	4.00	0.00
............................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	72.00	23.00	40.00	9.00	0.00
............................................................................................TGAACACAGCTGGTGGAATCCA................................................	22	1	70.00	0.00	64.00	6.00	0.00
............................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	70.00	4.00	43.00	23.00	0.00
............................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	70.00	1.00	60.00	9.00	0.00
............................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	70.00	1.00	29.00	40.00	0.00
............................................................................................TGAxxACAGCTGGTGGTATCC.................................................	19	1	68.00	2.00	66.00	0.00	0.00
............................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	68.00	12.00	5.00	51.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	68.00	5.00	32.00	31.00	0.00
............................................................................................TGAACACAGCTGGTTGTAT...................................................	19	1	68.00	9.00	56.00	3.00	0.00
............................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	66.00	10.00	30.00	26.00	0.00
............................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	64.00	14.00	37.00	13.00	0.00
............................................................................................TGAACACAGCTGGTGGGAT...................................................	19	1	64.00	1.00	14.00	49.00	0.00
............................................................................................TGAACACAGCTGGGGGTAT...................................................	19	1	63.00	1.00	4.00	58.00	0.00
...........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	60.00	3.00	42.00	15.00	0.00
............................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	59.00	7.00	7.00	45.00	0.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	57.00	9.00	43.00	5.00	0.00

droBip1

GAAAA-G-------CTCCTTTG-------------TGTGCATCTGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------

Size

Hit Count

Total Norm

dp4

AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAGC---------AACAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	14304.00	1562.00	32.00	7071.00	5639.00
............................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	11133.00	2653.00	187.00	3906.00	4387.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	10456.00	1906.00	27.00	5566.00	2957.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	4610.00	1146.00	9.00	3231.00	224.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	2920.00	638.00	34.00	1536.00	712.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	671.00	97.00	22.00	552.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	453.00	112.00	0.00	254.00	87.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	375.00	159.00	0.00	193.00	23.00
............................................................................................TGAACACAGCTGGTGGTATCCAA...............................................	23	1	356.00	86.00	4.00	160.00	106.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	345.00	85.00	4.00	235.00	21.00
............................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	1	195.00	4.00	0.00	37.00	154.00
............................................................................................TGAACACAGCTGGTGGTATCCAATT.............................................	25	1	173.00	67.00	3.00	76.00	27.00
............................................................................................TGAACACAGCTGGTGGTATCCAAA..............................................	24	1	134.00	48.00	6.00	57.00	23.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	129.00	32.00	0.00	31.00	66.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	123.00	3.00	0.00	73.00	47.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	101.00	1.00	0.00	21.00	79.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	75.00	3.00	1.00	67.00	4.00
............................................................................................TGAACACAGCTGGTGGTATCCAAC..............................................	24	1	69.00	6.00	2.00	8.00	53.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	63.00	2.00	1.00	7.00	53.00
.................................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	62.00	31.00	0.00	31.00	0.00
.................................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	62.00	34.00	0.00	28.00	0.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	61.00	0.00	0.00	52.00	9.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	60.00	1.00	0.00	25.00	34.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	57.00	4.00	0.00	45.00	8.00
............................................................................................TGAACACAGCTGGGGGTATCCAAT..............................................	24	1	55.00	7.00	0.00	11.00	37.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	54.00	2.00	0.00	49.00	3.00
............................................................................................TGAACACAGCTGGTGGGATCCAAT..............................................	24	1	52.00	1.00	0.00	8.00	43.00
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	49.00	0.00	0.00	12.00	37.00
............................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	48.00	2.00	0.00	44.00	2.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	47.00	14.00	0.00	32.00	1.00
............................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	45.00	30.00	0.00	12.00	3.00
............................................................................................TGAACACAGCTGGTxxTATCCAAT..............................................	22	1	44.00	3.00	0.00	0.00	41.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	43.00	11.00	0.00	24.00	8.00
............................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	42.00	0.00	0.00	34.00	8.00
............................................................................................TGAACACAGCTGGTGTTATCCAAT..............................................	24	1	42.00	3.00	0.00	2.00	37.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	40.00	3.00	0.00	4.00	33.00
............................................................................................TGAACACAGCTGGTGGTATCCAATA.............................................	25	1	39.00	10.00	0.00	24.00	5.00
............................................................................................TGAACACAGCTGGCGGTATCCAAT..............................................	24	1	36.00	7.00	2.00	22.00	5.00
............................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	35.00	4.00	0.00	31.00	0.00
............................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	35.00	0.00	0.00	20.00	15.00
........................................................................TTGAATATGGTGCAAGCAAG......................................................................	20	1	32.00	7.00	3.00	21.00	1.00
............................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	29.00	2.00	0.00	5.00	22.00
............................................................................................TGAACACAGCTGGTGGCATCCAAT..............................................	24	1	28.00	6.00	0.00	16.00	6.00
............................................................................................TGAACACAGCTGGTGGTATCCCAT..............................................	24	1	27.00	1.00	9.00	17.00	0.00
............................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	27.00	1.00	0.00	8.00	18.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	25.00	1.00	0.00	14.00	10.00
............................................................................................TGAACACAGCTGGTGGCAT...................................................	19	1	24.00	1.00	0.00	23.00	0.00
............................................................................................TGAACACAGCTGGAGGTATCCAAT..............................................	24	1	24.00	0.00	3.00	14.00	7.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	23.00	0.00	0.00	5.00	18.00
............................................................................................TGAACACAGCTGGTGGAATC..................................................	20	1	23.00	0.00	0.00	22.00	1.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	23.00	1.00	0.00	21.00	1.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	21.00	1.00	0.00	13.00	7.00
............................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	21.00	4.00	0.00	1.00	16.00
............................................................................................TGAACACAGCTGGTTGTATCCAAT..............................................	24	1	21.00	0.00	1.00	0.00	20.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	20.00	1.00	0.00	1.00	18.00
............................................................................................TGAACACAGCTGGTGGGAT...................................................	19	1	20.00	1.00	0.00	19.00	0.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	20.00	2.00	0.00	8.00	10.00
............................................................................................TGAACACAGCTGGTGCTATCCAAT..............................................	24	1	19.00	2.00	0.00	1.00	16.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	19.00	1.00	0.00	13.00	5.00
............................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	19.00	4.00	0.00	9.00	6.00
...........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	18.00	6.00	0.00	11.00	1.00
............................................................................................TGAACACAGCTGGTGGTGTC..................................................	20	1	18.00	1.00	0.00	16.00	1.00
............................................................................................TGCACACAGCTGGTGGTATCC.................................................	21	1	18.00	1.00	0.00	17.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	18.00	3.00	0.00	14.00	1.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	18.00	2.00	0.00	12.00	4.00
............................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	17.00	0.00	0.00	2.00	15.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	17.00	0.00	0.00	15.00	2.00
............................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	17.00	6.00	0.00	11.00	0.00
............................................................................................TGAACACAGCTGxxGGTATCCAAT..............................................	22	1	17.00	1.00	0.00	0.00	16.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	17.00	3.00	0.00	3.00	11.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	16.00	4.00	0.00	9.00	3.00
............................................................................................TGCACACAGCTGGTGGTATC..................................................	20	1	15.00	0.00	0.00	15.00	0.00
............................................................................................TGAACACAGCTGATGGTATC..................................................	20	1	15.00	0.00	0.00	5.00	10.00
............................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	15.00	2.00	0.00	12.00	1.00
............................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	1	15.00	5.00	0.00	10.00	0.00
............................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	14.00	4.00	0.00	9.00	1.00
............................................................................................TGAACACAGCTGGTGGTATAA.................................................	21	1	14.00	8.00	0.00	6.00	0.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	14.00	2.00	0.00	4.00	8.00
............................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	14.00	0.00	1.00	13.00	0.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	14.00	2.00	0.00	3.00	9.00
............................................................................................TGAACACAGCTGGTGGTCTC..................................................	20	1	14.00	0.00	0.00	14.00	0.00
............................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	14.00	0.00	0.00	7.00	7.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	14.00	2.00	0.00	3.00	9.00
............................................................................................TGAACACAGCTGGTGCTATC..................................................	20	1	14.00	1.00	0.00	10.00	3.00
............................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	14.00	0.00	1.00	13.00	0.00
............................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	14.00	0.00	0.00	14.00	0.00
............................................................................................TGAACACAGCTGGGGGTAT...................................................	19	1	13.00	0.00	0.00	12.00	1.00
............................................................................................TGAACACAGCTGATGGTATCCAAT..............................................	24	1	13.00	0.00	0.00	4.00	9.00
............................................................................................TGAACACAGCTGCTGGTATCCAAT..............................................	24	1	13.00	3.00	0.00	3.00	7.00
............................................................................................TGAACACAGCTGGTGGTATCCAAAA.............................................	25	1	13.00	7.00	0.00	6.00	0.00
............................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	13.00	2.00	0.00	1.00	10.00
............................................................................................TGAACACAGCTGGCGGCATCC.................................................	21	1	13.00	0.00	0.00	13.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCGAT..............................................	24	1	13.00	0.00	0.00	13.00	0.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	13.00	2.00	0.00	3.00	8.00
............................................................................................TGAACACAGCTAGTGGTATCCAAT..............................................	24	1	12.00	3.00	0.00	8.00	1.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	12.00	1.00	0.00	8.00	3.00
...........................................................................................CTGAACACAGCTGGTGGTATCCAAT..............................................	25	1	12.00	7.00	1.00	3.00	1.00
............................................................................................TGAACACATCTGGTGGTATC..................................................	20	1	12.00	1.00	0.00	6.00	5.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	12.00	1.00	0.00	6.00	5.00
............................................................................................TGAAAACAGCTGGTGGTATCCAAT..............................................	24	1	11.00	0.00	3.00	8.00	0.00
............................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	11.00	1.00	0.00	5.00	5.00

droPer1

AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAG---------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	2	8604.50	1366.50	8.00	2715.00	4086.00	429.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	2	7157.00	1566.00	8.00	1869.50	3581.50	132.00
............................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	2	6077.00	916.50	49.50	1928.00	2869.50	313.50
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	2	4946.50	1384.50	1.00	824.00	2736.50	0.50
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	2	1811.50	257.50	10.50	709.50	781.50	52.50
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	2	455.50	13.00	6.50	182.50	253.50	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAA...............................................	23	2	318.50	49.50	1.00	108.50	152.50	7.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	2	300.50	78.50	0.00	58.50	158.00	5.50
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	2	273.50	0.50	0.00	1.50	7.50	264.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	2	235.50	24.00	0.00	62.00	149.50	0.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	2	176.00	76.50	0.00	26.00	73.50	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAATT.............................................	25	2	113.00	18.50	0.00	29.00	64.00	1.50
............................................................................................TGAACACAGCTGGTGGTATCCAAA..............................................	24	2	102.00	14.50	3.00	36.00	47.00	1.50
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	2	95.50	4.00	0.00	17.50	74.00	0.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	2	66.00	1.00	0.00	14.00	50.50	0.50
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	2	60.50	1.50	0.00	11.00	48.00	0.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	2	58.50	3.00	0.00	17.50	38.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	2	56.50	0.00	0.00	14.50	36.00	6.00
.................................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	2	52.50	8.00	0.00	11.50	33.00	0.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	2	52.00	0.50	0.00	12.50	39.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	2	51.50	18.50	0.00	14.50	17.00	1.50
............................................................................................TGAACACAGCTGGTGGCATC..................................................	20	2	51.50	1.00	0.00	12.00	38.50	0.00
............................................................................................TGAACACAGCTGGCGGTAT...................................................	19	2	51.00	1.50	0.00	4.00	45.50	0.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	2	50.50	3.00	0.00	5.00	37.50	5.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	2	48.00	0.00	0.00	0.00	1.00	47.00
............................................................................................TGAACACAGCTGGCGGTATCCAAT..............................................	24	2	45.00	1.50	1.00	11.00	31.00	0.50
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	2	42.00	3.00	0.00	3.50	33.50	2.00
.................................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	2	42.00	2.50	0.00	10.50	29.00	0.00
............................................................................................TGAACACAGCTGGAGGTATC..................................................	20	2	41.00	0.50	0.00	10.00	30.50	0.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	2	39.00	4.00	0.00	10.50	23.50	1.00
............................................................................................TGAACACAGCTGGGGGTATCCAAT..............................................	24	2	38.50	3.50	0.00	1.50	31.50	2.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	2	38.50	3.00	0.00	2.50	28.50	4.50
............................................................................................TGAACACAGCTGGTGGCATCCAAT..............................................	24	2	37.00	2.00	0.50	8.50	25.00	1.00
............................................................................................TGAACACAGCTGGTGGAATC..................................................	20	2	36.50	5.00	0.00	11.00	20.50	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAATA.............................................	25	2	35.50	2.50	0.00	16.50	16.50	0.00
............................................................................................TGAACACAGCTGGTGGTATCCCAT..............................................	24	2	35.00	0.00	3.50	10.00	21.50	0.00
............................................................................................TGAACACAGCTGGAGGTATCCAAT..............................................	24	2	35.00	2.00	0.00	3.50	29.50	0.00
............................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	2	34.50	0.50	0.00	4.00	30.00	0.00
............................................................................................TGAACACAGCTGGTGGCAT...................................................	19	2	34.00	1.50	0.00	4.00	28.50	0.00
............................................................................................TGAACACAGCTGGAGGTAT...................................................	19	2	31.00	1.00	0.00	5.50	24.50	0.00
............................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	2	29.50	0.00	0.00	6.50	23.00	0.00
............................................................................................TGAACACAGCTGGTGGGATC..................................................	20	2	29.00	1.50	0.00	4.00	23.00	0.50
............................................................................................TGAACACAGCTGGGGGTAT...................................................	19	2	27.50	2.00	0.00	0.50	25.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAAC..............................................	24	2	26.50	4.50	0.50	6.00	8.50	7.00
............................................................................................TGAACACAGCTGGTGGTGTC..................................................	20	2	26.00	3.00	0.00	3.50	19.50	0.00
............................................................................................TGAAAACAGCTGGTGGTATCCAAT..............................................	24	2	26.00	0.00	0.50	4.50	21.00	0.00
............................................................................................TGAAAACAGCTGGTGGTATC..................................................	20	2	24.50	0.00	0.00	5.00	19.50	0.00
............................................................................................TGAACACAGCTGGTGGGAT...................................................	19	2	24.50	1.50	0.00	0.00	23.00	0.00
........................................................................TTGAATATGGTGCAAGCAAG......................................................................	20	2	24.00	8.00	1.00	6.00	9.00	0.00
............................................................................................TGAACACAGCTGGTGGTGT...................................................	19	2	23.00	0.50	0.00	1.00	21.50	0.00
............................................................................................TGAACACAGCTGGTGGAAT...................................................	19	2	23.00	4.00	0.00	5.50	13.50	0.00
............................................................................................TGAACACAGCTGGTGGAATCCAAT..............................................	24	2	22.50	5.00	0.00	2.50	15.00	0.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	2	22.00	1.50	0.00	3.00	17.50	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	2	22.00	0.00	0.00	0.00	0.00	22.00
............................................................................................TGAACACAGCTGGTGGGATCCAAT..............................................	24	2	21.50	1.50	0.00	1.50	15.50	3.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	2	21.00	1.50	0.00	8.00	11.50	0.00
............................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	2	20.00	8.50	0.00	5.50	6.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCTAT..............................................	24	2	20.00	0.00	0.00	3.00	17.00	0.00
............................................................................................CGAACACAGCTGGTGGTATC..................................................	20	2	19.50	2.50	0.00	3.00	11.00	3.00
............................................................................................TGAACACAGCGGGTGGTATCC.................................................	21	2	19.00	0.00	0.00	1.50	17.00	0.50
............................................................................................TGAACACAGCGGGTGGTATC..................................................	20	2	18.50	0.00	0.00	5.00	13.50	0.00
............................................................................................TGAACACAGCTGGTGGTCTC..................................................	20	2	18.00	0.00	0.00	3.00	15.00	0.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	2	17.00	1.50	0.00	10.50	5.00	0.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	2	17.00	2.50	0.00	3.50	6.00	5.00
............................................................................................TGAACACAGCTGGCGGCATC..................................................	20	2	16.50	0.00	0.00	4.00	12.50	0.00
............................................................................................TGAAAACAGCTGGTGGTAT...................................................	19	2	16.50	0.00	0.00	3.50	13.00	0.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	2	16.50	2.00	0.00	5.00	9.50	0.00
............................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	2	16.50	0.50	0.00	3.50	12.00	0.50
............................................................................................TGAACGCAGCTGGTGGTATC..................................................	20	2	16.00	2.00	0.00	5.50	8.00	0.50
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	2	16.00	3.00	0.00	5.50	7.50	0.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	2	15.50	1.50	0.00	3.50	7.00	3.50
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	2	15.50	0.50	0.00	1.00	11.00	3.00
............................................................................................AGAACACAGCTGGTGGTATCC.................................................	21	2	15.00	1.00	0.00	2.00	8.00	4.00
............................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	2	15.00	2.50	0.00	2.50	9.00	1.00
............................................................................................TGAACACAGCGGGTGGTAT...................................................	19	2	15.00	0.50	0.00	0.00	14.50	0.00
............................................................................................TGAGCACAGCTGGTGGTATCCAAT..............................................	24	2	15.00	3.00	0.00	3.50	7.50	1.00
............................................................................................TGAACACAGCTGGTGGTATCCGAT..............................................	24	2	15.00	1.50	0.00	3.50	9.50	0.50
............................................................................................TGAACACAGCTGGCGGCATCC.................................................	21	2	14.50	0.00	0.00	3.50	11.00	0.00
............................................................................................AGAACACAGCTGGTGGTATC..................................................	20	2	14.00	2.00	0.00	1.50	9.50	1.00
............................................................................................TGAACACAGCTGGTGTTATCCAAT..............................................	24	2	14.00	3.00	0.00	1.50	3.50	6.00
............................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	2	13.50	0.50	0.00	0.50	11.50	1.00
............................................................................................TGAACACAGCTGGTGGTCT...................................................	19	2	13.50	0.00	0.00	1.50	12.00	0.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	2	13.00	0.00	0.00	3.00	7.00	3.00
............................................................................................TGAACACAGCTGGTGGTATCTAAT..............................................	24	2	13.00	0.50	0.00	5.00	7.50	0.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	2	13.00	0.50	0.00	2.00	10.50	0.00
............................................................................................TGAACACAGCTGTTGGTATC..................................................	20	2	13.00	2.00	0.00	1.00	9.00	1.00
............................................................................................TGAACGCAGCTGGTGGTATCCAAT..............................................	24	2	12.50	0.50	0.00	10.00	2.00	0.00
............................................................................................TGAACACAGCTGGTGGTTT...................................................	19	2	12.50	2.50	0.00	1.00	9.00	0.00
............................................................................................TGAACACAGCTGGTGCTATC..................................................	20	2	12.50	1.50	0.00	1.50	9.50	0.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	2	12.50	0.50	0.00	2.50	6.50	3.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	2	12.50	0.00	0.00	2.00	10.00	0.50
............................................................................................TGAACACAGCTGTTGGTAT...................................................	19	2	12.00	2.50	0.00	1.50	8.00	0.00
............................................................................................TGAACACAGCTGGTGGTAGC..................................................	20	2	12.00	0.00	0.00	1.50	10.50	0.00
............................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	2	12.00	0.00	0.00	3.00	9.00	0.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	2	12.00	1.00	0.00	2.00	9.00	0.00
............................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	2	11.50	0.00	0.00	6.00	5.00	0.50
............................................................................................TGAACATAGCTGGTGGTATCC.................................................	21	2	11.50	1.00	0.00	2.00	8.00	0.50
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	2	11.50	0.00	0.00	0.00	0.00	11.50
............................................................................................TGAACACAGCTGGTGGTATCCAAAA.............................................	25	2	11.50	2.00	0.00	1.00	8.50	0.00
............................................................................................TGAACACAGCTGGTGGTAA...................................................	19	2	11.50	2.00	0.00	3.00	6.50	0.00
............................................................................................TGAACACAGCTCGTGGTATC..................................................	20	2	11.00	1.50	0.00	2.00	7.50	0.00

droWil1

AAGCT-T-TCTAGATTCTT--C-------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTGCATCC-AT-GCAACACCA----------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	1301776.00	73.00	33.00	1899.00	1299771.00
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	604607.00	1115.00	299.00	45641.00	557552.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	286427.00	781.00	169.00	29609.00	255868.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	163104.00	39.00	3.00	1067.00	161995.00
............................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	96502.00	0.00	0.00	3.00	96499.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	84183.00	482.00	168.00	20212.00	63321.00
............................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	78432.00	0.00	0.00	2.00	78430.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	44894.00	1.00	3.00	173.00	44717.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	19617.00	2.00	1.00	98.00	19516.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	19295.00	519.00	100.00	13285.00	5391.00
............................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	12819.00	1.00	0.00	28.00	12790.00
............................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	10285.00	0.00	1.00	10.00	10274.00
............................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	7951.00	0.00	0.00	3.00	7948.00
............................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	6318.00	1.00	0.00	2.00	6315.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	5857.00	0.00	1.00	49.00	5807.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	5777.00	0.00	0.00	47.00	5730.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	5697.00	33.00	5.00	814.00	4845.00
............................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	4276.00	0.00	0.00	3.00	4273.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	4048.00	6.00	1.00	197.00	3844.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	3962.00	4.00	1.00	368.00	3589.00
............................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	3466.00	0.00	0.00	0.00	3466.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	3343.00	0.00	0.00	45.00	3298.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	3181.00	1.00	1.00	65.00	3114.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	3035.00	0.00	1.00	51.00	2983.00
............................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	2948.00	0.00	0.00	21.00	2927.00
............................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	2899.00	0.00	0.00	3.00	2896.00
............................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	2890.00	0.00	0.00	43.00	2847.00
............................................................................................TGAACACAGCTGATGGTATCCAGT..............................................	24	1	2878.00	0.00	0.00	2.00	2876.00
............................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	2804.00	1.00	0.00	23.00	2780.00
............................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	2722.00	0.00	0.00	7.00	2715.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	2686.00	30.00	4.00	688.00	1964.00
............................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	2604.00	1.00	0.00	37.00	2566.00
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	2442.00	2.00	0.00	118.00	2322.00
............................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	2440.00	0.00	0.00	5.00	2435.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	2260.00	0.00	0.00	56.00	2204.00
............................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	2163.00	0.00	0.00	0.00	2163.00
............................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	1982.00	2.00	0.00	53.00	1927.00
............................................................................................TGAACACAGCTGCTGGTATCCAGT..............................................	24	1	1958.00	0.00	0.00	5.00	1953.00
............................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	1833.00	0.00	0.00	0.00	1833.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	1803.00	0.00	1.00	48.00	1754.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	1767.00	88.00	114.00	1539.00	26.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	1745.00	5.00	10.00	741.00	989.00
............................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	1727.00	0.00	0.00	3.00	1724.00
............................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	1678.00	0.00	0.00	13.00	1665.00
............................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	1	1608.00	5.00	3.00	463.00	1137.00
............................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	1576.00	0.00	0.00	33.00	1543.00
............................................................................................TGAACACAGCTGGTCGTATCCAGT..............................................	24	1	1569.00	0.00	0.00	1.00	1568.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	1529.00	0.00	0.00	43.00	1486.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	1461.00	4.00	0.00	73.00	1384.00
............................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	1393.00	0.00	0.00	4.00	1389.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	1387.00	1.00	0.00	0.00	1386.00
............................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	1371.00	0.00	0.00	57.00	1314.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	1346.00	0.00	0.00	41.00	1305.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	1299.00	1.00	0.00	65.00	1233.00
............................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	1266.00	0.00	0.00	1.00	1265.00
............................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	1259.00	2.00	0.00	5.00	1252.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	1256.00	5.00	3.00	175.00	1073.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	1233.00	5.00	1.00	326.00	901.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1224.00	11.00	2.00	626.00	585.00
............................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	1209.00	0.00	0.00	11.00	1198.00
............................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	1174.00	0.00	0.00	9.00	1165.00
............................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	1150.00	3.00	0.00	49.00	1098.00
............................................................................................TGAACACACCTGGTGGTATCCAGT..............................................	24	1	1070.00	0.00	0.00	10.00	1060.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	1065.00	0.00	0.00	82.00	983.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	1026.00	1.00	0.00	102.00	923.00
............................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	1017.00	0.00	0.00	1.00	1016.00
............................................................................................TGAACACAGCTTGTGGTATCCAGT..............................................	24	1	998.00	0.00	2.00	14.00	982.00
............................................................................................TGAACACAGCTGGTGGAATCCAGT..............................................	24	1	988.00	0.00	0.00	10.00	978.00
............................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	962.00	0.00	0.00	43.00	919.00
............................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	940.00	0.00	0.00	2.00	938.00
............................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	887.00	0.00	0.00	2.00	885.00
............................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	884.00	0.00	1.00	41.00	842.00
............................................................................................TGAACACAGCTGGGGGTATCCAGG..............................................	24	1	810.00	0.00	0.00	0.00	810.00
............................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	801.00	0.00	0.00	35.00	766.00
............................................................................................TGAACACAGCTGGTGGGATCCAGG..............................................	24	1	801.00	0.00	0.00	0.00	801.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	798.00	1.00	0.00	87.00	710.00
............................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	796.00	0.00	0.00	38.00	758.00
............................................................................................TGAACACAGCTxGTGGTATCCAGT..............................................	23	1	781.00	2.00	0.00	31.00	748.00
............................................................................................TGAACACAGCTGGxGGTATCCAGT..............................................	23	1	776.00	0.00	0.00	0.00	776.00
............................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	770.00	3.00	1.00	26.00	740.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	769.00	2.00	0.00	120.00	647.00
............................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	763.00	1.00	0.00	21.00	741.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	751.00	1.00	0.00	68.00	682.00
............................................................................................TGAACGCAGCTGGTGGTATCCAGT..............................................	24	1	733.00	0.00	0.00	2.00	731.00
............................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	718.00	1.00	0.00	31.00	686.00
............................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	711.00	1.00	0.00	38.00	672.00
............................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	707.00	4.00	0.00	78.00	625.00
............................................................................................TGAACACAGCTGGTGGGATCCAGC..............................................	24	1	701.00	0.00	0.00	0.00	701.00
............................................................................................TGAACACAGCTxxTGGTATC..................................................	18	1	695.00	0.00	0.00	16.00	679.00
............................................................................................TGAACACAGCTGATGGTATC..................................................	20	1	690.00	1.00	0.00	53.00	636.00
............................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	673.00	0.00	0.00	6.00	667.00
............................................................................................TGAACACAGCTGGTGGTGTCCAGT..............................................	24	1	641.00	0.00	0.00	1.00	640.00
............................................................................................TGAACACAGCTGGTGGTATCCGGT..............................................	24	1	636.00	0.00	0.00	1.00	635.00
............................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	623.00	0.00	0.00	6.00	617.00
............................................................................................CGAACACAGCTGGTGGTATCCAGT..............................................	24	1	605.00	0.00	0.00	6.00	599.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	605.00	0.00	0.00	3.00	602.00
............................................................................................TGAACACAGCTGGGGGTATCCAGC..............................................	24	1	605.00	0.00	0.00	0.00	605.00
............................................................................................TGAACACAGCTGGTGGTACCCAGT..............................................	24	1	582.00	0.00	0.00	1.00	581.00
............................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	572.00	0.00	0.00	6.00	566.00
............................................................................................TGAACACAGCTGGTxxTATCCAG...............................................	21	1	546.00	1.00	0.00	0.00	545.00
............................................................................................TGAACACAGCTGGxGGTATC..................................................	19	1	532.00	0.00	0.00	15.00	517.00

droVir3

AAGC-----------TTTTTCA--------------GTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT---GGCAGCCAAT-GCAACAATTGCAACAACTGCAAC-A	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	307423.00	6008.00	19656.00	240.00	150634.00	130885.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	215665.00	119.00	133.00	12.00	103933.00	111468.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	82420.00	2831.00	13073.00	112.00	28969.00	37435.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	69142.00	61.00	31.00	3.00	39175.00	29872.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	37772.00	1580.00	3053.00	143.00	20024.00	12972.00
............................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	25384.00	0.00	0.00	0.00	12598.00	12786.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	20772.00	1583.00	14413.00	74.00	2012.00	2690.00
............................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	16257.00	1.00	2.00	1.00	6522.00	9731.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	9776.00	4.00	10.00	0.00	3438.00	6324.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	4303.00	0.00	9.00	0.00	2080.00	2214.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	3818.00	103.00	171.00	7.00	2052.00	1485.00
............................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	3771.00	1.00	1.00	0.00	2242.00	1527.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	3475.00	20.00	42.00	1.00	2050.00	1362.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	2750.00	8.00	91.00	1.00	1346.00	1304.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	2563.00	189.00	677.00	4.00	998.00	695.00
............................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	2383.00	0.00	0.00	0.00	1285.00	1098.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	1877.00	4.00	32.00	1.00	1076.00	764.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	1664.00	1.00	2.00	0.00	990.00	671.00
............................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	1532.00	2.00	12.00	1.00	923.00	594.00
............................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	1211.00	6.00	4.00	0.00	619.00	582.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1194.00	105.00	530.00	38.00	250.00	271.00
............................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	1151.00	7.00	40.00	0.00	571.00	533.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	1123.00	2.00	7.00	0.00	514.00	600.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1034.00	1.00	20.00	0.00	567.00	446.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	944.00	5.00	305.00	2.00	378.00	254.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	939.00	18.00	243.00	3.00	398.00	277.00
............................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	927.00	1.00	0.00	0.00	505.00	421.00
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	920.00	10.00	30.00	1.00	413.00	466.00
............................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	772.00	1.00	0.00	0.00	456.00	315.00
............................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	744.00	0.00	0.00	0.00	451.00	293.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	697.00	7.00	39.00	2.00	390.00	259.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	673.00	7.00	90.00	5.00	209.00	362.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	578.00	8.00	38.00	1.00	359.00	172.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	552.00	6.00	18.00	1.00	319.00	208.00
............................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	550.00	0.00	0.00	0.00	294.00	256.00
............................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	518.00	0.00	0.00	0.00	276.00	242.00
............................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	514.00	3.00	19.00	0.00	208.00	284.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	495.00	86.00	289.00	3.00	52.00	65.00
............................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	471.00	6.00	35.00	0.00	195.00	235.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	457.00	1.00	24.00	0.00	201.00	231.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	453.00	11.00	136.00	2.00	170.00	134.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	453.00	144.00	299.00	2.00	2.00	6.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	451.00	6.00	35.00	0.00	206.00	204.00
............................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	429.00	0.00	0.00	0.00	222.00	207.00
............................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	428.00	0.00	0.00	0.00	246.00	182.00
............................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	409.00	0.00	2.00	0.00	228.00	179.00
............................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	388.00	0.00	0.00	0.00	248.00	140.00
............................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	387.00	3.00	209.00	1.00	89.00	85.00
............................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	386.00	5.00	7.00	0.00	216.00	158.00
............................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	386.00	0.00	0.00	0.00	214.00	172.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	385.00	10.00	189.00	2.00	79.00	105.00
............................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	371.00	9.00	3.00	0.00	156.00	203.00
............................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	352.00	7.00	21.00	0.00	173.00	151.00
............................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	324.00	1.00	0.00	0.00	167.00	156.00
............................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	308.00	1.00	2.00	0.00	197.00	108.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	304.00	8.00	82.00	0.00	101.00	113.00
............................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	297.00	0.00	5.00	0.00	147.00	145.00
............................................................................................TGAACACAGCTGGGGGTATCCAGG..............................................	24	1	293.00	0.00	0.00	0.00	173.00	120.00
............................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	285.00	0.00	0.00	0.00	174.00	111.00
............................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	277.00	5.00	11.00	0.00	162.00	99.00
............................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	267.00	8.00	20.00	1.00	109.00	129.00
............................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	264.00	0.00	0.00	0.00	182.00	82.00
............................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	262.00	2.00	7.00	0.00	152.00	101.00
............................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	260.00	0.00	0.00	0.00	134.00	126.00
............................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	258.00	1.00	3.00	0.00	165.00	89.00
............................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	255.00	0.00	0.00	0.00	160.00	95.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	254.00	0.00	0.00	0.00	75.00	179.00
............................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	246.00	7.00	11.00	1.00	138.00	89.00
............................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	244.00	8.00	53.00	0.00	85.00	98.00
............................................................................................TGAACACAGCTGGAGGTAT...................................................	19	2	122.00	3.00	115.50	0.00	1.50	2.00
............................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	236.00	0.00	0.00	0.00	170.00	66.00
............................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	233.00	0.00	0.00	0.00	114.00	119.00
............................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	230.00	4.00	219.00	0.00	3.00	4.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	224.00	5.00	16.00	1.00	113.00	89.00
............................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	220.00	0.00	0.00	0.00	103.00	117.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	213.00	3.00	57.00	1.00	87.00	65.00
............................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	205.00	0.00	0.00	0.00	101.00	104.00
............................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	201.00	5.00	19.00	2.00	80.00	95.00
............................................................................................TGAACACAGCTGGTGGTAC...................................................	19	1	199.00	0.00	13.00	0.00	77.00	109.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	195.00	7.00	16.00	0.00	83.00	89.00
............................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	192.00	1.00	18.00	0.00	83.00	90.00
............................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	189.00	13.00	90.00	2.00	44.00	40.00
............................................................................................TGAACACAGCTGGGGGTATCCAGC..............................................	24	1	187.00	0.00	0.00	0.00	78.00	109.00
............................................................................................TGAACACAGCTGGCGGTATCCAG...............................................	23	1	186.00	0.00	0.00	0.00	105.00	81.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	179.00	6.00	32.00	0.00	78.00	63.00
............................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	177.00	4.00	4.00	0.00	74.00	95.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	174.00	4.00	14.00	2.00	75.00	79.00
............................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	174.00	0.00	0.00	0.00	93.00	81.00
............................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	171.00	2.00	18.00	0.00	84.00	67.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	171.00	17.00	110.00	5.00	22.00	17.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	171.00	1.00	38.00	0.00	73.00	59.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	170.00	2.00	24.00	0.00	70.00	74.00
............................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	170.00	0.00	0.00	0.00	87.00	83.00
............................................................................................TGAACGCAGCTGGTGGTATCCAGT..............................................	24	1	162.00	0.00	0.00	0.00	84.00	78.00
............................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	162.00	5.00	109.00	0.00	29.00	19.00
............................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	158.00	5.00	6.00	0.00	78.00	69.00
............................................................................................TGAACACAGCTGGTxxTATCCAG...............................................	21	1	158.00	0.00	0.00	0.00	106.00	52.00
............................................................................................TGAACACAGCTGGTTGTATCCAG...............................................	23	1	156.00	0.00	0.00	0.00	105.00	51.00
............................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	155.00	11.00	84.00	0.00	21.00	39.00
............................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	155.00	1.00	13.00	0.00	53.00	88.00
............................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	152.00	1.00	2.00	0.00	49.00	100.00

droMoj3

GAGTAAGC------TTTCTCTC-------------TGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTTT-ATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAAT-GCAACAACAGC---------A---A	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	33837.00	6347.00	15275.00	11812.00	403.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	25876.00	4026.00	12128.00	9467.00	255.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	22279.00	4798.00	9731.00	7506.00	244.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	6469.00	1819.00	2453.00	1906.00	291.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1674.00	300.00	732.00	630.00	12.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	1095.00	241.00	551.00	298.00	5.00
...........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	1006.00	326.00	391.00	287.00	2.00
.................................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	845.00	115.00	354.00	368.00	8.00
............................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	820.00	205.00	342.00	262.00	11.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	793.00	113.00	337.00	239.00	104.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	678.00	133.00	293.00	247.00	5.00
............................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	457.00	35.00	230.00	182.00	10.00
............................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	213.00	6.00	124.00	79.00	4.00
............................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	206.00	16.00	117.00	71.00	2.00
............................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	191.00	5.00	113.00	73.00	0.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	170.00	5.00	94.00	71.00	0.00
...........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	168.00	58.00	62.00	48.00	0.00
............................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	167.00	8.00	99.00	60.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	162.00	39.00	35.00	84.00	4.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	158.00	59.00	47.00	52.00	0.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	157.00	33.00	55.00	38.00	31.00
............................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	156.00	11.00	91.00	52.00	2.00
............................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	146.00	2.00	87.00	56.00	1.00
............................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	145.00	4.00	80.00	61.00	0.00
............................................................................................TGAACACAGCTGGTGGCAT...................................................	19	1	144.00	4.00	70.00	69.00	1.00
........................................................................TTGAGTTT-ATGT-TGCAAG......................................................................	18	1	140.00	5.00	71.00	64.00	0.00
.................................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	132.00	30.00	62.00	40.00	0.00
............................................................................................TGAACACAGCTGGTGGTCT...................................................	19	1	122.00	0.00	27.00	95.00	0.00
............................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	120.00	8.00	69.00	42.00	1.00
............................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	90.00	38.00	31.00	20.00	1.00
............................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	1	88.00	0.00	15.00	73.00	0.00
............................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	86.00	16.00	42.00	25.00	3.00
............................................................................................TGAACACAGCTGGTGGTGT...................................................	19	1	85.00	2.00	47.00	36.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	83.00	19.00	33.00	31.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGAA.............................................	25	1	83.00	17.00	27.00	39.00	0.00
............................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	82.00	2.00	49.00	29.00	2.00
............................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	77.00	4.00	35.00	36.00	2.00
............................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	74.00	1.00	56.00	15.00	2.00
............................................................................................TGAACACAGCTGGTGGGAT...................................................	19	1	74.00	5.00	29.00	40.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGAAA............................................	26	1	74.00	23.00	39.00	9.00	3.00
............................................................................................TGAACACAGCTGGTGGTCTC..................................................	20	1	73.00	0.00	16.00	56.00	1.00
............................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	73.00	2.00	29.00	39.00	3.00
............................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	70.00	2.00	34.00	33.00	1.00
............................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	68.00	3.00	54.00	11.00	0.00
............................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	67.00	3.00	34.00	29.00	1.00
............................................................................................TGAACACAGCTGGTGGTGTC..................................................	20	1	63.00	2.00	40.00	20.00	1.00
............................................................................................TGAACACAGCTGGGGGTAT...................................................	19	1	62.00	2.00	32.00	28.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	1	61.00	19.00	25.00	16.00	1.00
............................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	61.00	1.00	34.00	26.00	0.00
............................................................................................TGAACACAGCTGGTGGAAT...................................................	19	1	60.00	2.00	47.00	11.00	0.00
............................................................................................TGAACACAGCGGGTGGTATCC.................................................	21	1	58.00	1.00	44.00	12.00	1.00
............................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	57.00	13.00	25.00	19.00	0.00
............................................................................................TGAGCACAGCTGGTGGTAT...................................................	19	1	56.00	3.00	29.00	23.00	1.00
.................................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	55.00	24.00	11.00	20.00	0.00
............................................................................................TGAACACAGCTGGTGGTAGCC.................................................	21	1	55.00	1.00	29.00	25.00	0.00
............................................................................................TGAACACAGCTGGTGGTATTC.................................................	21	1	51.00	10.00	17.00	24.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	50.00	19.00	16.00	15.00	0.00
............................................................................................TGAACACAGCTGGTGGAATC..................................................	20	1	49.00	0.00	39.00	10.00	0.00
...........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	49.00	0.00	28.00	20.00	1.00
............................................................................................TGAAAACAGCTGGTGGTATC..................................................	20	1	48.00	1.00	32.00	15.00	0.00
.................................................TGGGATAC-ACCCTGTGCTCGCTT.........................................................................................	23	1	48.00	5.00	24.00	19.00	0.00
............................................................................................TGAACACAGCTGGCGGCATCC.................................................	21	1	46.00	0.00	31.00	15.00	0.00
............................................................................................TGAACACAGCTGGTGATATCC.................................................	21	1	45.00	2.00	22.00	21.00	0.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	45.00	5.00	15.00	25.00	0.00
............................................................................................TGAACACAGCTGGTGGTATAA.................................................	21	1	43.00	6.00	16.00	5.00	16.00
............................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	43.00	2.00	18.00	23.00	0.00
............................................................................................TGAAAACAGCTGGTGGTAT...................................................	19	1	43.00	3.00	26.00	14.00	0.00
............................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	43.00	5.00	13.00	24.00	1.00
............................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	42.00	0.00	23.00	19.00	0.00
............................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	41.00	2.00	17.00	22.00	0.00
............................................................................................TGAACACCGCTGGTGGTAT...................................................	19	1	41.00	0.00	7.00	34.00	0.00
............................................................................................TGAACACAGCTGGTGGCATCCA................................................	22	1	41.00	5.00	22.00	13.00	1.00
............................................................................................CGAACACAGCTGGTGGTATC..................................................	20	1	41.00	3.00	24.00	14.00	0.00
............................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	41.00	3.00	25.00	13.00	0.00
............................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	41.00	2.00	24.00	15.00	0.00
............................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	40.00	12.00	16.00	11.00	1.00
............................................................................................CGAACACAGCTGGTGGTAT...................................................	19	1	40.00	2.00	23.00	14.00	1.00
............................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	39.00	2.00	18.00	18.00	1.00
............................................................................................TGAACACAGCTGGCGGCATC..................................................	20	1	38.00	0.00	19.00	19.00	0.00
............................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	1	38.00	0.00	22.00	16.00	0.00
............................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	38.00	2.00	21.00	15.00	0.00
............................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	38.00	3.00	21.00	13.00	1.00
............................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	38.00	7.00	8.00	23.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAGAG.............................................	25	1	38.00	10.00	19.00	7.00	2.00
............................................................................................TGAACACAGCTGGTGGTAG...................................................	19	1	38.00	0.00	20.00	17.00	1.00
............................................................................................TGAACACAGCTGGCGGCAT...................................................	19	1	37.00	0.00	21.00	16.00	0.00
...........................................................................................CTGAACACAGCTGGTGGTATC..................................................	21	1	37.00	5.00	16.00	15.00	1.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	37.00	3.00	20.00	14.00	0.00
...........................................................................................GTGAACACAGCTGGTGGTATCC.................................................	22	1	36.00	16.00	15.00	5.00	0.00
............................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	36.00	5.00	13.00	18.00	0.00
............................................................................................TGAACGCAGCTGGTGGTAT...................................................	19	1	35.00	2.00	21.00	12.00	0.00
............................................................................................TGAACACAGCTGGTAGTATCC.................................................	21	1	35.00	2.00	7.00	26.00	0.00
............................................................................................TGAACACAGCTAGTGGTAT...................................................	19	1	35.00	5.00	5.00	25.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	35.00	8.00	14.00	13.00	0.00
............................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	35.00	9.00	15.00	11.00	0.00
............................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	34.00	11.00	16.00	7.00	0.00
............................................................................................TGAACACAGCTGGTAGTAT...................................................	19	1	34.00	1.00	7.00	25.00	1.00
............................................................................................TGAACACGGCTGGTGGTAT...................................................	19	1	33.00	3.00	18.00	12.00	0.00
............................................................................................TGAACACAGCGGGTGGTAT...................................................	19	1	33.00	0.00	24.00	9.00	0.00
...........................................................................................GTGAACACAGCTGGTGGTA....................................................	19	1	32.00	11.00	13.00	8.00	0.00
............................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	32.00	1.00	20.00	10.00	1.00

droGri2

AAAAA-G-------CTTTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGCAC-AT-GCAACAACAACAACAAGAGCA---A	Size	Hit Count	Total Norm	V109 Male body
............................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	76.00	76.00
............................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	44.00	44.00
............................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	41.00	41.00
............................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	8.00	8.00
............................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	4.00	4.00
........................................................................TTGAATATTGTGTAAGCAAG......................................................................	20	1	4.00	4.00
.................................................TGGGATATTGCCCTGTGCTCGCT..........................................................................................	23	1	4.00	4.00
.................................................TGGGATATTGCCCTGTGCTCG............................................................................................	21	1	3.00	3.00
............................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	3.00	3.00
............................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	3.00	3.00
............................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	2.00	2.00
............................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	2.00	2.00
............................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	1.00	1.00
............................................................................................TGAACACAGATGGTGGTATC..................................................	20	1	1.00	1.00
............................................................................................TGAATACAGCTGGTGGTATC..................................................	20	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGGTCT...................................................	19	1	1.00	1.00
...................................................................................................................................AC-AT-GCAACAACAACAACAAGTGCT---.	25	1	1.00	1.00
............................................................................................TGAACAAAGCTGGTGGTATC..................................................	20	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	1.00	1.00
............................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1.00	1.00
............................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGCTCTCC.................................................	21	1	1.00	1.00
............................................................................................TGCACACAGCTGGTGGTATCCAGT..............................................	24	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGGTC....................................................	18	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1.00	1.00
............................................................................................TGAACCCAGCTGGTGGTATCC.................................................	21	1	1.00	1.00
............................................................................................TGAACACAGCTGGTGCTAT...................................................	19	1	1.00	1.00

Generated: 04/20/2012 at 05:33:38 EDT

dme-mir-317

chr3R:5916848-5916939 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup