Possible Orthologs for dme-mir-317

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr3R:15459127-15459249 -	95.97	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCT-TGCTGCACCACA AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTTGCTGCTCCACA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ......................................................................TGAACACAGCTGGTGGTATCC................................ 21 1 1829110.00 56.00 1688359.00 133801.00 6894.00 ......................................................................TGAACACAGCTGGTGGTATCCAGT............................. 24 1 934481.00 9.00 798867.00 127913.00 7692.00 ......................................................................TGAACACAGCTGGTGGTATC................................. 20 1 378362.00 12.00 344492.00 32554.00 1304.00 ......................................................................TGAACACAGCTGGTGGTATCCAG.............................. 23 1 269483.00 3.00 215584.00 52390.00 1506.00 ......................................................................TGAACACAGCTGGTGGTATCCA............................... 22 1 131200.00 51.00 115397.00 15234.00 518.00 ......................................................................TGAACACAGCTGGTGGTAT.................................. 19 1 110938.00 5.00 105350.00 4817.00 766.00 ......................................................................TGAACACAGCTGGTGGTATCCAGG............................. 24 1 88821.00 0.00 70440.00 17316.00 1065.00 ......................................................................TGAACACAGCTGGTGGTATCCAGC............................. 24 1 75683.00 0.00 67208.00 7905.00 570.00 ......................................................................TGAACACAGCTGGTGGTATCCAGA............................. 24 1 73312.00 1.00 50975.00 22086.00 250.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTA............................ 25 1 43865.00 3.00 35089.00 8461.00 312.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTT............................ 25 1 41827.00 0.00 33801.00 7865.00 161.00 ......................................................................TGAACACAGCTGGTGGTATCCT............................... 22 1 24821.00 1.00 22394.00 2343.00 83.00 ......................................................................TGAACACAGCTGGTGGGATCC................................ 21 1 14952.00 0.00 13616.00 1253.00 83.00 ......................................................................TGAACACAGCTGTTGGTATCC................................ 21 1 14217.00 0.00 13093.00 1083.00 41.00 ......................................................................TGAACACAGCTGGTGGTA................................... 18 1 13970.00 1.00 13171.00 731.00 67.00 ......................................................................TGAACACAGCTxGTGGTATCC................................ 20 1 9587.00 0.00 8873.00 682.00 32.00 ......................................................................TGAACACAGCTGCTGGTATCC................................ 21 1 9327.00 0.00 8615.00 674.00 38.00 ......................................................................TGAACACAGCTTGTGGTATCC................................ 21 1 8696.00 0.00 7956.00 702.00 38.00 ......................................................................TGAACACAGCTGGTGGTATCT................................ 21 1 7321.00 0.00 6593.00 687.00 41.00 ......................................................................TGAACACAGCTGGTGGAATCC................................ 21 1 6572.00 0.00 6007.00 527.00 38.00 ......................................................................TGAACACAGCTGGGGGTATCC................................ 21 1 5945.00 0.00 5296.00 635.00 14.00 ......................................................................TGAACACAGCTGGTGGTATCCAC.............................. 23 1 5573.00 0.00 4771.00 781.00 21.00 ......................................................................TGAACACAGCTGGTGGTAC.................................. 19 1 4977.00 0.00 4740.00 211.00 26.00 ......................................................................TGAACACAGCTGGTGGTATCCG............................... 22 1 4716.00 0.00 4018.00 677.00 21.00 ......................................................................TGAACACAGCTCGTGGTATCC................................ 21 1 4461.00 0.00 4077.00 360.00 24.00 ......................................................................TGAACACAGCTGGTGGGATCCAGT............................. 24 1 4304.00 0.00 3609.00 669.00 26.00 ......................................................................TGAACACAGCTGGTGGTATT................................. 20 1 3896.00 0.00 3625.00 255.00 16.00 ......................................................................TGAACACAGCTGGGGGTATCCAGT............................. 24 1 3445.00 0.00 2853.00 570.00 22.00 ......................................................................TGAACACAGCTGCTGGTATC................................. 20 1 3294.00 0.00 2973.00 310.00 11.00 ......................................................................TGAACACAGCTGGTTGTATCC................................ 21 1 3258.00 0.00 3040.00 203.00 15.00 ......................................................................TGAACACAGCTGTTGGTATC................................. 20 1 3253.00 0.00 2963.00 279.00 11.00 ......................................................................TGAACACAGCTxxTGGTATCC................................ 19 1 3159.00 0.00 2939.00 205.00 15.00 ......................................................................TGAACACAGCTGGCGGTATCC................................ 21 1 2922.00 1.00 2682.00 226.00 13.00 ......................................................................TGAACACAGCTGGTGGCATCC................................ 21 1 2886.00 0.00 2662.00 213.00 11.00 ......................................................................TGAACACAGCTGGTGGTATCA................................ 21 1 2801.00 0.00 2418.00 371.00 12.00 ......................................................................TGAACACAGCTGGTGTTATCCAGT............................. 24 1 2569.00 0.00 2288.00 249.00 32.00 ......................................................................TGAGCACAGCTGGTGGTATCC................................ 21 1 2416.00 0.00 2199.00 207.00 10.00 ......................................................................TGAACACATCTGGTGGTATCC................................ 21 1 2300.00 0.00 2153.00 135.00 12.00 ......................................................................TGAACACAGCTxGTGGTATC................................. 19 1 2292.00 0.00 2087.00 191.00 14.00 ......................................................................TGAACACAGCTGGTGTTATCC................................ 21 1 2264.00 0.00 2115.00 138.00 11.00 ......................................................................TGAACACATCTGGTGGTATCCAGT............................. 24 1 2102.00 0.00 1808.00 269.00 25.00 ......................................................................TGAACACAGCTGGTTGTATCCAGT............................. 24 1 2048.00 0.00 1779.00 245.00 24.00 ......................................................................TGAACACAGCTGGTGGTATCCGG.............................. 23 1 1985.00 0.00 1433.00 543.00 9.00 ......................................................................TGAACACAGCTTGTGGTATC................................. 20 1 1842.00 0.00 1681.00 151.00 10.00 ......................................................................TGAACACAGCTGGTCGTATCC................................ 21 1 1822.00 0.00 1697.00 113.00 12.00 ......................................................................TGAACACAGCxxGTGGTATCC................................ 19 1 1762.00 0.00 1647.00 111.00 4.00 ......................................................................TGAACACAGCTGGCGGTATCCAGT............................. 24 1 1752.00 0.00 1474.00 268.00 10.00 ......................................................................TGAACACAGCTGGGGGTATC................................. 20 1 1648.00 0.00 1503.00 143.00 2.00 ......................................................................TGAACACAGCTGGTGGAATCCAGT............................. 24 1 1561.00 0.00 1316.00 233.00 12.00 ......................................................................TGAACACAGCTGGTGGGATCCAG.............................. 23 1 1542.00 0.00 1181.00 350.00 11.00 ......................................................................TGAACACAGCTGGTTGTATC................................. 20 1 1528.00 0.00 1413.00 110.00 5.00 ......................................................................TGAACACAGCCGGTGGTATCC................................ 21 1 1504.00 0.00 1386.00 113.00 5.00 ......................................................................TGAACACAGCTGGTxGTATCC................................ 20 1 1440.00 0.00 1343.00 90.00 7.00 ......................................................................TGAACACAGCTGGTxxTATCCAGT............................. 22 1 1414.00 0.00 1265.00 135.00 14.00 ......................................................................TGAACACAGCTGTTGGTATCCAGT............................. 24 1 1412.00 0.00 1283.00 119.00 10.00 ......................................................................TGAACACAGCTGxxGGTATCC................................ 19 1 1359.00 0.00 1288.00 66.00 5.00 ......................................................................TGAACACAGCTGGTGGTATCCC............................... 22 1 1313.00 0.00 1198.00 110.00 5.00 ......................................................................TGAGCACAGCTGGTGGTATCCAGT............................. 24 1 1214.00 0.00 1011.00 192.00 11.00 ......................................................................TGAACACAGCTGGAGGTATCC................................ 21 1 1213.00 0.00 1089.00 117.00 7.00 ......................................................................TGAACACAGCTGGTGGCATCCAGT............................. 24 1 1204.00 0.00 1012.00 180.00 12.00 ......................................................................TGAACACAGCTGxxGGTATCCAGT............................. 22 1 1179.00 0.00 1053.00 115.00 11.00 ......................................................................TGAACACAGCTGTTGGTATCCA............................... 22 1 1158.00 0.00 1012.00 144.00 2.00 ......................................................................TGAACACACCTGGTGGTATCC................................ 21 1 1129.00 0.00 1061.00 62.00 6.00 ......................................................................TGAACACAGCTAGTGGTATCC................................ 21 1 1100.00 0.00 999.00 100.00 1.00 ......................................................................TGAACGCAGCTGGTGGTATCC................................ 21 1 1065.00 0.00 956.00 106.00 3.00 ......................................................................TGAACACAGCTCGTGGTATC................................. 20 1 1056.00 0.00 964.00 89.00 3.00 ......................................................................TGAACACAGCTGGTGGGATCCA............................... 22 1 1040.00 0.00 927.00 113.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTG............................ 25 1 1018.00 0.00 881.00 130.00 7.00 ......................................................................TGAACACAGCTGGTGCTATCC................................ 21 1 1007.00 0.00 957.00 49.00 1.00 ......................................................................TGAACACAGCTGGTCGTATCCAGT............................. 24 1 1004.00 0.00 886.00 102.00 16.00 ......................................................................TGAACACAGCTGGGGGTATCCAG.............................. 23 1 995.00 0.00 761.00 226.00 8.00 ......................................................................TGAACACAGCTGGTGGTATA................................. 20 1 989.00 0.00 911.00 75.00 3.00 ......................................................................TGAACACAGCTGTTGGTATCCAG.............................. 23 1 973.00 0.00 801.00 167.00 5.00 ......................................................................TGAACACAGCTGGTGGTTT.................................. 19 1 972.00 0.00 897.00 64.00 11.00 ......................................................................CGAACACAGCTGGTGGTATCC................................ 21 1 963.00 0.00 847.00 76.00 40.00 ......................................................................TGAACACAGCTGGTGGTATCCAAT............................. 24 1 953.00 0.00 875.00 33.00 45.00 ......................................................................TGAACACAGCTGGTGGTATCCAGAA............................ 25 1 945.00 0.00 581.00 359.00 5.00 ......................................................................TGGACACAGCTGGTGGTATCC................................ 21 1 931.00 0.00 867.00 62.00 2.00 ......................................................................TGAACACAGCTGGTGCTATCCAGT............................. 24 1 928.00 0.00 816.00 101.00 11.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTTT........................... 26 1 918.00 0.00 655.00 259.00 4.00 ......................................................................TGAACACAGCTGGTCGTATC................................. 20 1 905.00 0.00 847.00 54.00 4.00 ......................................................................TGAACACAGCTGGTGGTT................................... 18 1 890.00 0.00 813.00 69.00 8.00 ......................................................................TGAACACAGCCGGTGGTATCCAGT............................. 24 1 888.00 0.00 763.00 117.00 8.00 ......................................................................TGAACACAGCTGGTGGGATC................................. 20 1 888.00 0.00 745.00 140.00 3.00 ......................................................................TGAACACAGCTGGTGGTAG.................................. 19 1 876.00 0.00 796.00 72.00 8.00 ......................................................................TGAACACACCTGGTGGTATCCAGT............................. 24 1 858.00 0.00 758.00 87.00 13.00 ......................................................................TGAACACAGCTGGTxGTATCCAGT............................. 23 1 852.00 0.00 765.00 82.00 5.00 ......................................................................TGAACACGGCTGGTGGTATCC................................ 21 1 838.00 0.00 782.00 53.00 3.00 ......................................................................TGAACACAGCTGGAGGTATCCAGT............................. 24 1 817.00 0.00 689.00 122.00 6.00 ......................................................................TGAACACAGCTxxTGGTATC................................. 18 1 814.00 0.00 739.00 74.00 1.00 ......................................................................TGAACACAGCTGGTGTTATC................................. 20 1 814.00 0.00 747.00 65.00 2.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTC............................ 25 1 796.00 0.00 684.00 108.00 4.00 ......................................................................TGAACACAGCTGGTGGTGTCC................................ 21 1 792.00 0.00 731.00 58.00 3.00 ......................................................................TGAACACAGCTGGCGGTATC................................. 20 1 766.00 0.00 698.00 65.00 3.00 ......................................................................TGAACACAGCTGATGGTATCC................................ 21 1 713.00 0.00 653.00 58.00 2.00 ......................................................................TGAACACAGCTGGTGTTATCCAG.............................. 23 1 708.00 0.00 599.00 101.00 8.00 ......................................................................TGAACACAGCTTGTGGTATCCAGT............................. 24 1 698.00 0.00 584.00 110.00 4.00 ......................................................................TGAACACAGCTGGxGGTATCC................................ 20 1 691.00 0.00 658.00 31.00 2.00 ......................................................................TGAACACAGCTGCTGGTATCCAGT............................. 24 1 688.00 0.00 613.00 60.00 15.00 ......................................................................TGAACACAGCTGGTGGTAA.................................. 19 1 683.00 0.00 657.00 21.00 5.00 ......................................................................TGAACACAGCTGGTxGTATC................................. 19 1 678.00 0.00 636.00 36.00 6.00

droSec1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	super_0:15996573-15996694 -	97.55	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCTCCACA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......................................................................TGAACACAGCTGGTGGTATCC............................... 21 1 103780.00 7099.00 356.00 96325.00 ......................................................................TGAACACAGCTGGTGGTATC................................ 20 1 35851.00 3072.00 111.00 32668.00 ......................................................................TGAACACAGCTGGTGGTAT................................. 19 1 33693.00 1611.00 54.00 32028.00 ......................................................................TGAACACAGCTGGTGGTATCCA.............................. 22 1 31980.00 2519.00 100.00 29361.00 ......................................................................TGAACACAGCTGGTGGTA.................................. 18 1 3111.00 5.00 6.00 3100.00 ......................................................................TGAACACAGCTGGTGGTATT................................ 20 1 2202.00 299.00 4.00 1899.00 ......................................................................TGAACACAGCTGGTGGTATCCT.............................. 22 1 2171.00 163.00 1.00 2007.00 ............................TGGGATACACCCTGTGCTCGCT........................................................................ 22 1 1897.00 306.00 63.00 1528.00 ......................................................................TGAACACAGCTGGTGGTATCT............................... 21 1 1498.00 138.00 1.00 1359.00 ......................................................................TGAACACAGCTGGTGGTATCA............................... 21 1 1131.00 105.00 2.00 1024.00 ......................................................................TGAACACAGCTGGTGGTATCCAGT............................ 24 1 1077.00 168.00 27.00 882.00 ..................................................TTGAATGAAATGCAAGCAAG.................................................... 20 1 763.00 340.00 5.00 418.00 ......................................................................TGAACACAGCTGGTGGTATA................................ 20 1 643.00 105.00 2.00 536.00 ............................TGGGATACACCCTGTGCTCGC......................................................................... 21 1 596.00 124.00 10.00 462.00 ......................................................................TGAACACAGCTGGTGGTAA................................. 19 1 382.00 37.00 1.00 344.00 ......................................................................TGAACACAGCTGGTGGTATCCAG............................. 23 1 367.00 72.00 1.00 294.00 ......................................................................TGAACACAGCTGGTGGTATTT............................... 21 1 340.00 79.00 0.00 261.00 ......................................................................TGAACACAGCTGGTGGTT.................................. 18 1 293.00 0.00 0.00 293.00 .....................................................................GTGAACACAGCTGGTGGTAT................................. 20 1 263.00 29.00 1.00 233.00 ......................................................................TGAACACAGCTGGTGGTATCCAT............................. 23 1 219.00 20.00 0.00 199.00 ......................................................................TGAACACAGCTGGCGGTATCC............................... 21 1 198.00 15.00 2.00 181.00 .....................................................................CTGAACACAGCTGGTGGTATCC............................... 22 1 190.00 10.00 0.00 180.00 ............................TGGGATACACCCTGTGCTCG.......................................................................... 20 1 188.00 70.00 1.00 117.00 ......................................................................TGAACACAGCTGGTGGTAACC............................... 21 1 168.00 48.00 0.00 120.00 ......................................................................TGAACAAAGCTGGTGGTATCC............................... 21 1 168.00 0.00 0.00 168.00 ......................................................................TGAACACAGCTGGTGGTACCC............................... 21 1 161.00 58.00 1.00 102.00 ......................................................................TGAACACAGCTxGTGGTATCC............................... 20 1 159.00 8.00 1.00 150.00 ......................................................................TGAACACAGCTGGTGTTATCC............................... 21 1 158.00 7.00 0.00 151.00 ......................................................................TGAACACAGCTGCTGGTATCC............................... 21 1 158.00 18.00 1.00 139.00 ......................................................................TGAACACAGCTGGTTGTATCC............................... 21 1 156.00 9.00 0.00 147.00 ......................................................................TGAGCACAGCTGGTGGTATCC............................... 21 1 153.00 11.00 3.00 139.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTA........................... 25 1 146.00 21.00 1.00 124.00 ......................................................................TGAACACAGCTGGTGGTATAT............................... 21 1 145.00 42.00 0.00 103.00 ......................................................................TGAACACAGCTGGTGGTATCCAC............................. 23 1 144.00 18.00 0.00 126.00 ......................................................................TGAACACAGCTTGTGGTATCC............................... 21 1 141.00 7.00 0.00 134.00 ......................................................................TGAACACAGCTGGTCGTATCC............................... 21 1 133.00 7.00 0.00 126.00 ......................................................................TGAACACAGCTGGTGGTATAC............................... 21 1 131.00 0.00 0.00 131.00 ......................................................................TGAACACAGATGGTGGTATCC............................... 21 1 129.00 3.00 0.00 126.00 .....................................................................GTGAACACAGCTGGTGGTATC................................ 21 1 125.00 6.00 1.00 118.00 ......................................................................TGAACACAGCTGGTGGTATAA............................... 21 1 117.00 37.00 2.00 78.00 ......................................................................TGAACACAGCTGGTGGTATCCTT............................. 23 1 115.00 7.00 0.00 108.00 ......................................................................TGAACACAGCTGGTGGTTT................................. 19 1 112.00 3.00 0.00 109.00 ......................................................................CGAACACAGCTGGTGGTATCC............................... 21 1 111.00 8.00 0.00 103.00 ......................................................................TGAACACAGCTGGTGGTATCTT.............................. 22 1 108.00 11.00 0.00 97.00 ......................................................................TGAACACAGCTGTTGGTATCC............................... 21 1 108.00 8.00 0.00 100.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTT........................... 25 1 107.00 14.00 1.00 92.00 ......................................................................TGAACACAGCTGGTGGCATCC............................... 21 1 102.00 11.00 0.00 91.00 ......................................................................TGAACGCAGCTGGTGGTATCC............................... 21 1 98.00 10.00 0.00 88.00 ......................................................................TGAACACAGCTGGTGGTATCG............................... 21 1 93.00 4.00 0.00 89.00 ......................................................................TGAACACAGCTGGTGGTGTCC............................... 21 1 93.00 4.00 0.00 89.00 ......................................................................TGAACACAGCTGGTTGTATC................................ 20 1 92.00 9.00 0.00 83.00 ......................................................................TTAACACAGCTGGTGGTATCC............................... 21 1 91.00 3.00 0.00 88.00 ......................................................................TGAACACAGCTGGGGGTATCC............................... 21 1 89.00 5.00 1.00 83.00 ......................................................................TGAACACAGCTGGTGCTATCC............................... 21 1 87.00 10.00 0.00 77.00 ......................................................................TGAACACGGCTGGTGGTATCC............................... 21 1 86.00 3.00 1.00 82.00 ......................................................................TGAACACATCTGGTGGTATCC............................... 21 1 85.00 4.00 1.00 80.00 ......................................................................TGAACACAGCTCGTGGTATCC............................... 21 1 83.00 4.00 0.00 79.00 ......................................................................TAAACACAGCTGGTGGTATCC............................... 21 1 82.00 0.00 0.00 82.00 ......................................................................TGAACACAGCCGGTGGTATCC............................... 21 1 82.00 11.00 0.00 71.00 ......................................................................TGAxxACAGCTGGTGGTATCC............................... 19 1 81.00 7.00 2.00 72.00 ......................................................................TGAAAACAGCTGGTGGTATCC............................... 21 1 81.00 3.00 1.00 77.00 ......................................................................AGAACACAGCTGGTGGTATCC............................... 21 1 78.00 0.00 0.00 78.00 ......................................................................TGAGCACAGCTGGTGGTATCCA.............................. 22 1 78.00 4.00 0.00 74.00 ......................................................................TGAACACAGCTGGTGGTATCCC.............................. 22 1 76.00 5.00 0.00 71.00 ......................................................................TGAACACAGCTGCTGGTAT................................. 19 1 74.00 7.00 0.00 67.00 ......................................................................TGGACACAGCTGGTGGTATCC............................... 21 1 74.00 10.00 0.00 64.00 ......................................................................TGAACACAGCTGGTGGTACC................................ 20 1 71.00 26.00 0.00 45.00 ......................................................................TGAACACAGCTxGTGGTATCCA.............................. 21 1 70.00 7.00 0.00 63.00 ......................................................................TGAACACAGCTGGCGGTATC................................ 20 1 69.00 10.00 1.00 58.00 ......................................................................TGAACACAGCTAGTGGTATCC............................... 21 1 69.00 3.00 0.00 66.00 ......................................................................TGAACACAGCTGTTGGTAT................................. 19 1 68.00 8.00 1.00 59.00 ......................................................................TGAACACAACTGGTGGTATCC............................... 21 1 67.00 3.00 0.00 64.00 ......................................................................TGAACACAGCTGGTGGTAC................................. 19 1 66.00 14.00 0.00 52.00 ......................................................................TGAACACAGCTGGCGGTAT................................. 19 1 66.00 3.00 2.00 61.00 ......................................................................TGAACACAGCTGGTCGTATC................................ 20 1 63.00 5.00 0.00 58.00 ......................................................................TGAACACAGCTGGTxGTATCC............................... 20 1 62.00 4.00 0.00 58.00 ......................................................................TGAACACACCTGGTGGTATCC............................... 21 1 60.00 6.00 0.00 54.00 ......................................................................TGAGCACAGCTGGTGGTATC................................ 20 1 60.00 6.00 0.00 54.00 ......................................................................TGAACACAGCTGGTGGTAACCA.............................. 22 1 60.00 27.00 0.00 33.00 ......................................................................TGAACAAAGCTGGTGGTATCCA.............................. 22 1 59.00 1.00 0.00 58.00 ......................................................................TGAACACAGCTTGTGGTATCCA.............................. 22 1 59.00 5.00 0.00 54.00 ......................................................................TGAACAAAGCTGGTGGTATC................................ 20 1 58.00 0.00 0.00 58.00 ......................................................................TGAACACAGCTGGTGGTAAC................................ 20 1 58.00 20.00 0.00 38.00 ......................................................................TGAACACAGCTGGTGGTATCCATT............................ 24 1 57.00 4.00 0.00 53.00 ......................................................................TGAACAAAGCTGGTGGTAT................................. 19 1 56.00 0.00 0.00 56.00 ......................................................................TGAATACAGCTGGTGGTATCC............................... 21 1 56.00 2.00 1.00 53.00 ......................................................................TGAACACAGCTxGTGGTATC................................ 19 1 56.00 4.00 1.00 51.00 ............................TGGGATACACCCTGTGCTCGCTT....................................................................... 23 1 55.00 10.00 1.00 44.00 .....................................................................CTGAACACAGCTGGTGGTATC................................ 21 1 55.00 3.00 0.00 52.00 ......................................................................TGAACACCGCTGGTGGTATCC............................... 21 1 55.00 7.00 1.00 47.00 ......................................................................TGAACACAGCTGGCGGTATCCA.............................. 22 1 54.00 12.00 0.00 42.00 ......................................................................TGAACACAGCTGGTxGTATC................................ 19 1 54.00 7.00 1.00 46.00 ......................................................................TGAACACAGCTGGTGTTATC................................ 20 1 54.00 3.00 0.00 51.00 ......................................................................TGAxxACAGCTGGTGGTATCCA.............................. 20 1 53.00 5.00 1.00 47.00 ......................................................................TGAACACAGCTGGTGATATCC............................... 21 1 52.00 3.00 1.00 48.00 ......................................................................TGAACACAGCTGCTGGTATC................................ 20 1 52.00 12.00 1.00 39.00 ......................................................................TGAACACAGCTGGTGGTATCCAGA............................ 24 1 51.00 8.00 1.00 42.00 .......................................................................GAACACAGCTGGTGGTATCC............................... 20 1 51.00 4.00 1.00 46.00 ......................................................................TCAACACAGCTGGTGGTATCC............................... 21 1 51.00 7.00 0.00 44.00 ......................................................................TGAACACAGCTTGTGGTATC................................ 20 1 50.00 4.00 0.00 46.00 ......................................................................TGAACACAGATGGTGGTAT................................. 19 1 49.00 0.00 0.00 49.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	chr3R:9963959-9964079 +	95.92	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCGTCCTTGCTGCTCCAG- Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head ......................................................................TGAACACAGCTGGTGGTATCC............................... 21 1 295874.00 19.00 8462.00 1965.00 17034.00 268394.00 ......................................................................TGAACACAGCTGGTGGTATCCAGT............................ 24 1 278773.00 6.00 91.00 61.00 157.00 278458.00 ......................................................................TGAACACAGCTGGTGGTATC................................ 20 1 63966.00 5.00 3705.00 1020.00 7247.00 51989.00 ......................................................................TGAACACAGCTGGTGGTATCCAG............................. 23 1 54301.00 0.00 16.00 34.00 38.00 54213.00 ......................................................................TGAACACAGCTGGTGGTATCCA.............................. 22 1 27508.00 4.00 1106.00 541.00 2156.00 23701.00 ......................................................................TGAACACAGCTGGTGGTATCCAGG............................ 24 1 27184.00 0.00 1.00 0.00 1.00 27182.00 ......................................................................TGAACACAGCTGGTGGTATCCAGC............................ 24 1 26870.00 0.00 0.00 0.00 0.00 26870.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTT........................... 25 1 13913.00 1.00 9.00 15.00 20.00 13868.00 ......................................................................TGAACACAGCTGGTGGTAT................................. 19 1 13818.00 0.00 3825.00 608.00 7588.00 1797.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTA........................... 25 1 6177.00 0.00 5.00 2.00 6.00 6164.00 ......................................................................TGAACACAGCTGGTGGTATCCAGA............................ 24 1 4876.00 0.00 1.00 2.00 1.00 4872.00 ......................................................................TGAACACAGCTGGTGGTATCCT.............................. 22 1 4422.00 0.00 114.00 82.00 256.00 3970.00 ......................................................................TGAACACAGCTGGGGGTATCCAGT............................ 24 1 3273.00 0.00 0.00 0.00 1.00 3272.00 ......................................................................TGAACACAGCTGGGGGTATCC............................... 21 1 2984.00 0.00 14.00 15.00 127.00 2828.00 ......................................................................TGAACACAGCTGTTGGTATCC............................... 21 1 2397.00 0.00 7.00 0.00 38.00 2352.00 ......................................................................TGAACACAGCTGGTGGGATCC............................... 21 1 2337.00 0.00 22.00 1.00 128.00 2186.00 ......................................................................TGAACACAGCTGCTGGTATCC............................... 21 1 1432.00 0.00 1.00 2.00 27.00 1402.00 ......................................................................TGAACACAGCTxGTGGTATCC............................... 20 1 1426.00 0.00 2.00 5.00 2.00 1417.00 ......................................................................TGAACACAGCTTGTGGTATCC............................... 21 1 1401.00 0.00 7.00 0.00 9.00 1385.00 ......................................................................TGAACACAGCTGGTGGTATCCAC............................. 23 1 1373.00 0.00 1.00 2.00 7.00 1363.00 ......................................................................TGAACACAGCTGGTGGGATCCAGT............................ 24 1 1279.00 0.00 1.00 0.00 1.00 1277.00 ......................................................................TGAACACAGCTGGTGGTATCT............................... 21 1 1272.00 0.00 205.00 52.00 361.00 654.00 ......................................................................TGAACACAGCTGGTGGTATCCG.............................. 22 1 945.00 0.00 3.00 1.00 8.00 933.00 ............................TGGGATACACCCTGTGCTCGCT........................................................................ 22 1 918.00 3.00 369.00 85.00 457.00 4.00 ......................................................................TGAACACAGCTGGTGTTATCCAGT............................ 24 1 814.00 0.00 0.00 0.00 0.00 814.00 ......................................................................TGAACACAGCTGGGGGTATC................................ 20 1 758.00 0.00 12.00 12.00 58.00 676.00 ......................................................................TGAACACAGCTGGCGGTATCC............................... 21 1 758.00 0.00 38.00 11.00 124.00 585.00 ......................................................................TGAACACAGCTCGTGGTATCC............................... 21 1 747.00 0.00 11.00 3.00 16.00 717.00 ......................................................................TGAACACAGCTGGTTGTATCC............................... 21 1 655.00 0.00 13.00 2.00 13.00 627.00 ......................................................................TGAACACAGCTGGTGGTATCA............................... 21 1 654.00 0.00 125.00 25.00 226.00 278.00 ......................................................................TGAACACAGCTGGCGGTATCCAGT............................ 24 1 645.00 0.00 0.00 1.00 1.00 643.00 ......................................................................TGAACACAGCTGGAGGTATCC............................... 21 1 619.00 0.00 37.00 16.00 106.00 460.00 ......................................................................TGAACACAGCTGGTTGTATCCAGT............................ 24 1 616.00 0.00 0.00 0.00 0.00 616.00 ......................................................................TGAACACAGCTGGTGGTA.................................. 18 1 603.00 0.00 101.00 1.00 200.00 301.00 ......................................................................TGAACACAGCTGGGGGTATCCAG............................. 23 1 600.00 0.00 0.00 0.00 1.00 599.00 ......................................................................TGAACACAGCTGGAGGTATCCAGT............................ 24 1 574.00 0.00 1.00 0.00 1.00 572.00 ......................................................................TGAACACATCTGGTGGTATCCAGT............................ 24 1 532.00 0.00 0.00 0.00 0.00 532.00 ......................................................................TGAACACAGCTGTTGGTATC................................ 20 1 522.00 0.00 3.00 1.00 18.00 500.00 ......................................................................TGAACACAGCTGGTxxTATCCAGT............................ 22 1 512.00 0.00 0.00 0.00 0.00 512.00 ......................................................................TGAACACAGCTGGTGTTATCC............................... 21 1 491.00 0.00 9.00 3.00 29.00 450.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTTT.......................... 26 1 485.00 0.00 0.00 0.00 0.00 485.00 ......................................................................TGAACACAGCTxxTGGTATCC............................... 19 1 480.00 0.00 0.00 1.00 0.00 479.00 ......................................................................TGAACACAGCTGGTGGTATT................................ 20 1 473.00 0.00 95.00 54.00 247.00 77.00 ......................................................................TGAACACAGCTGCTGGTATC................................ 20 1 461.00 0.00 1.00 1.00 11.00 448.00 ......................................................................TGAACACAGCTGGTGGTATCCGG............................. 23 1 421.00 0.00 0.00 0.00 0.00 421.00 ......................................................................TGAGCACAGCTGGTGGTATCCAGT............................ 24 1 387.00 0.00 1.00 0.00 0.00 386.00 ......................................................................TGAACACAGCTGGTGGTATCCC.............................. 22 1 379.00 1.00 25.00 2.00 82.00 269.00 ......................................................................TGAGCACAGCTGGTGGTATCC............................... 21 1 378.00 0.00 24.00 5.00 25.00 324.00 ......................................................................TGAACACAGCTGxxGGTATCCAGT............................ 22 1 370.00 0.00 0.00 0.00 0.00 370.00 ......................................................................TGAACACAGCTGGTGGCATCC............................... 21 1 365.00 0.00 25.00 1.00 105.00 234.00 ..................................................TTGAATGAAATGCAAGCAAG.................................................... 20 1 363.00 0.00 59.00 87.00 199.00 18.00 ......................................................................TGAACACAGCTGGTCGTATCC............................... 21 1 358.00 0.00 7.00 0.00 7.00 344.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTC........................... 25 1 357.00 0.00 0.00 0.00 2.00 355.00 ......................................................................TGAACACATCTGGTGGTATCC............................... 21 1 353.00 0.00 4.00 1.00 15.00 333.00 ......................................................................TGAACACAGCTGGTGGGATCCAG............................. 23 1 352.00 0.00 0.00 0.00 0.00 352.00 ......................................................................TGAACACAGCTxGTGGTATC................................ 19 1 340.00 0.00 0.00 4.00 2.00 334.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTG........................... 25 1 339.00 0.00 0.00 0.00 1.00 338.00 ......................................................................TGAACACAGCTGGGGGTATCCAGG............................ 24 1 336.00 0.00 0.00 0.00 0.00 336.00 ......................................................................TGAACACAGCTGGTGCTATCCAGT............................ 24 1 305.00 0.00 0.00 0.00 2.00 303.00 ......................................................................TGAACACAGCTGTTGGTATCCAGT............................ 24 1 305.00 0.00 0.00 1.00 0.00 304.00 ......................................................................TGAACACAGCTGxxGGTATCC............................... 19 1 294.00 0.00 0.00 0.00 0.00 294.00 ......................................................................TGAACACAGCTGGGGGTATCCAGC............................ 24 1 287.00 0.00 0.00 0.00 0.00 287.00 ......................................................................TGAACACAGCTTGTGGTATC................................ 20 1 286.00 0.00 0.00 0.00 5.00 281.00 ......................................................................TGAACACAGCTGGTTGTATC................................ 20 1 283.00 0.00 6.00 3.00 4.00 270.00 ......................................................................TGAACACAGCTGGGGGTATCCA.............................. 22 1 278.00 0.00 3.00 7.00 11.00 257.00 ......................................................................TGAACACAGCTGGTxGTATCC............................... 20 1 277.00 0.00 1.00 2.00 4.00 270.00 ......................................................................TGAACACAGCTGGTCGTATCCAGT............................ 24 1 275.00 0.00 0.00 0.00 0.00 275.00 ......................................................................TGAACACAGCTGGTxGTATCCAGT............................ 23 1 275.00 0.00 0.00 0.00 1.00 274.00 ......................................................................TGAACACAGCTGTTGGTATCCAG............................. 23 1 267.00 0.00 0.00 0.00 0.00 267.00 ......................................................................TGAACACAGCTGGTGGCATCCAGT............................ 24 1 256.00 0.00 1.00 0.00 2.00 253.00 ......................................................................TGAACACAGCxxGTGGTATCC............................... 19 1 252.00 0.00 0.00 0.00 0.00 252.00 ......................................................................TGAACACAGCTGTTGGTATCCA.............................. 22 1 250.00 0.00 2.00 0.00 5.00 243.00 ......................................................................TGAACACAGCTGGTGGTGTCC............................... 21 1 247.00 0.00 25.00 2.00 95.00 125.00 ......................................................................TGAACACAGCCGGTGGTATCC............................... 21 1 244.00 0.00 8.00 2.00 23.00 211.00 ......................................................................TGAACACACCTGGTGGTATCCAGT............................ 24 1 240.00 0.00 0.00 0.00 2.00 238.00 ......................................................................TGAACACAGCTAGTGGTATCC............................... 21 1 233.00 0.00 30.00 0.00 14.00 189.00 ......................................................................TGAACACAGCCGGTGGTATCCAGT............................ 24 1 232.00 0.00 1.00 0.00 0.00 231.00 ......................................................................TGAACACAGCTGGCGGTATC................................ 20 1 224.00 0.00 14.00 12.00 62.00 136.00 ......................................................................TGAACACAGCTGGTGGGATCCA.............................. 22 1 219.00 0.00 5.00 3.00 10.00 201.00 ......................................................................TGGACACAGCTGGTGGTATCC............................... 21 1 215.00 0.00 11.00 4.00 53.00 147.00 ......................................................................TGAACACAGCTGGTGGAATCC............................... 21 1 210.00 0.00 13.00 0.00 26.00 171.00 ......................................................................TGAACACAGCTGGTGGTATCCAAT............................ 24 1 208.00 0.00 30.00 3.00 81.00 94.00 ......................................................................TGAACGCAGCTGGTGGTATCC............................... 21 1 206.00 0.00 6.00 0.00 39.00 161.00 ......................................................................TGAACACAGCTGGAGGTATC................................ 20 1 205.00 0.00 18.00 6.00 41.00 140.00 ............................TGGGATACACCCTGTGCTCGC......................................................................... 21 1 201.00 0.00 59.00 45.00 96.00 1.00 ......................................................................TGAACACAGCTGGTGGTATAC............................... 21 1 200.00 0.00 11.00 2.00 20.00 167.00 ......................................................................TGAACACACCTGGTGGTATCC............................... 21 1 194.00 0.00 2.00 2.00 5.00 185.00 ......................................................................TGAACACAGCTGGTGCTATCC............................... 21 1 192.00 0.00 1.00 2.00 16.00 173.00 ......................................................................CGAACACAGCTGGTGGTATCC............................... 21 1 190.00 0.00 19.00 2.00 25.00 144.00 ......................................................................TGAACACAGCTGGTGTTATCCAG............................. 23 1 173.00 0.00 0.00 0.00 0.00 173.00 ......................................................................TGAACACAGCTGGTCGTATC................................ 20 1 170.00 0.00 5.00 0.00 8.00 157.00 ......................................................................TGAACACAGCTGGTGGGATCCAGC............................ 24 1 168.00 0.00 0.00 0.00 0.00 168.00 ......................................................................TGAACACAGCTGCTGGTATCCAGT............................ 24 1 167.00 0.00 0.00 0.00 0.00 167.00 ......................................................................TGAACACAGCTGGTGGGATCCAGG............................ 24 1 165.00 0.00 0.00 0.00 0.00 165.00 ......................................................................TGAACACAGCTTGTGGTATCCAGT............................ 24 1 164.00 0.00 1.00 1.00 1.00 161.00 ......................................................................TGAACACAGCTGGTGGTGTCCAGT............................ 24 1 160.00 0.00 0.00 0.00 1.00 159.00 ......................................................................TGAACACAGCTGGTGGGATC................................ 20 1 157.00 0.00 16.00 6.00 46.00 89.00 ......................................................................TGAACACAGCTCGTGGTATC................................ 20 1 157.00 0.00 2.00 1.00 5.00 149.00 ......................................................................TGAACACAGCTGGTGTTATC................................ 20 1 153.00 0.00 0.00 0.00 9.00 144.00 ......................................................................CGAACACAGCTGGTGGTATCCAGT............................ 24 1 147.00 0.00 0.00 0.00 0.00 147.00 ......................................................................TGAACACAGCTGGGGGTATCCAGTT........................... 25 1 146.00 0.00 0.00 0.00 0.00 146.00

droEre2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
11	scaffold_4770:15683457-15683577 -	95.92	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCGTCCTTGCTGCTCCAG- Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ......................................................................TGAACACAGCTGGTGGTATCC............................... 21 1 151008.00 37.00 13034.00 0.00 137937.00 ......................................................................TGAACACAGCTGGTGGTATC................................ 20 1 47679.00 21.00 3769.00 0.00 43889.00 ......................................................................TGAACACAGCTGGTGGTATCCA.............................. 22 1 39325.00 36.00 1715.00 0.00 37574.00 ......................................................................TGAACACAGCTGGTGGTAT................................. 19 1 21399.00 4.00 1878.00 0.00 19517.00 ............................TGGGATACACCCTGTGCTCGCT........................................................................ 22 1 3411.00 8.00 810.00 0.00 2593.00 ......................................................................TGAACACAGCTGGTGGTATCCT.............................. 22 1 3128.00 1.00 137.00 0.00 2990.00 ......................................................................TGAACACAGCTGGTGGTATCA............................... 21 1 2493.00 1.00 174.00 0.00 2318.00 ......................................................................TGAACACAGCTGGTGGTATCCAGT............................ 24 1 2114.00 9.00 241.00 0.00 1864.00 ......................................................................TGAACACAGCTGGTGGTATCT............................... 21 1 1942.00 0.00 262.00 0.00 1680.00 ......................................................................TGAACACAGCTGGTGGTA.................................. 18 1 1814.00 0.00 21.00 0.00 1793.00 ......................................................................TGAACACAGCTGGTTGTATCC............................... 21 1 1243.00 0.00 21.00 0.00 1222.00 ......................................................................TTAACACAGCTGGTGGTATCC............................... 21 1 1229.00 0.00 7.00 0.00 1222.00 ......................................................................TGAACACAGCTTGTGGTATCC............................... 21 1 1119.00 0.00 12.00 0.00 1107.00 ......................................................................TGAACACATCTGGTGGTATCC............................... 21 1 855.00 0.00 8.00 0.00 847.00 ......................................................................TGAACACAGCTGGTGGTATT................................ 20 1 694.00 0.00 75.00 0.00 619.00 ......................................................................TGAACACAGATGGTGGTATCC............................... 21 1 681.00 0.00 9.00 0.00 672.00 ..................................................TTGAATGAAATGCAAGCAAG.................................................... 20 1 658.00 0.00 46.00 0.00 612.00 ............................TGGGATACACCCTGTGCTCGC......................................................................... 21 1 621.00 1.00 76.00 0.00 544.00 ......................................................................TGAACACAGCTGGTGGTATAC............................... 21 1 555.00 0.00 22.00 0.00 533.00 ......................................................................TGAACACAGCTGGCGGTATCC............................... 21 1 526.00 0.00 61.00 0.00 465.00 ......................................................................TGAACACAGCTGGTTGTATC................................ 20 1 518.00 0.00 4.00 0.00 514.00 ......................................................................TGAACACAGCTGGTGGTATCCAG............................. 23 1 517.00 0.00 46.00 0.00 471.00 .....................................................................GTGAACACAGCTGGTGGTAT................................. 20 1 406.00 0.00 18.00 0.00 388.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTA........................... 25 1 389.00 4.00 20.00 0.00 365.00 ......................................................................TTAACACAGCTGGTGGTATC................................ 20 1 385.00 0.00 0.00 0.00 385.00 ......................................................................TGAACACAGCTTGTGGTATC................................ 20 1 371.00 0.00 2.00 0.00 369.00 ......................................................................TGAACACAGCTGGTGGTATA................................ 20 1 360.00 0.00 21.00 0.00 339.00 ......................................................................TGAACACAGCTGGTGTTATCC............................... 21 1 350.00 0.00 22.00 0.00 328.00 ......................................................................TGAACACAGCTGGGGGTATCC............................... 21 1 345.00 0.00 35.00 0.00 310.00 ......................................................................TGAACACAGCTGGTGGTATCAA.............................. 22 1 341.00 0.00 5.00 0.00 336.00 ......................................................................TGAACACAGCTTGTGGTATCCA.............................. 22 1 331.00 0.00 2.00 0.00 329.00 ......................................................................TTAACACAGCTGGTGGTATCCA.............................. 22 1 326.00 0.00 0.00 0.00 326.00 ......................................................................TGAGCACAGCTGGTGGTATCC............................... 21 1 318.00 0.00 23.00 0.00 295.00 ......................................................................TGAAAACAGCTGGTGGTATCC............................... 21 1 313.00 0.00 17.00 0.00 296.00 ......................................................................TGAACACAGCTGGTTGTATCCA.............................. 22 1 308.00 0.00 2.00 0.00 306.00 ......................................................................TGAACACATCTGGTGGTATC................................ 20 1 304.00 0.00 0.00 0.00 304.00 ......................................................................TGAACAAAGCTGGTGGTATCC............................... 21 1 299.00 0.00 5.00 0.00 294.00 ......................................................................TGAACACAGCTGTTGGTATCC............................... 21 1 291.00 0.00 19.00 0.00 272.00 .....................................................................GTGAACACAGCTGGTGGTATC................................ 21 1 257.00 0.00 12.00 0.00 245.00 .....................................................................CTGAACACAGCTGGTGGTATCC............................... 22 1 251.00 0.00 17.00 0.00 234.00 ......................................................................TGAACACAGATGGTGGTATC................................ 20 1 243.00 0.00 2.00 0.00 241.00 ......................................................................TGAACACATCTGGTGGTATCCA.............................. 22 1 242.00 1.00 0.00 0.00 241.00 ......................................................................TGAACACAGCTGGTGGCATCC............................... 21 1 241.00 0.00 45.00 0.00 196.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTT........................... 25 1 234.00 0.00 16.00 0.00 218.00 ......................................................................CGAACACAGCTGGTGGTATCC............................... 21 1 227.00 0.00 15.00 0.00 212.00 ......................................................................TGAACACAGCTGGTGGTATCG............................... 21 1 221.00 0.00 28.00 0.00 193.00 ......................................................................TGAACACAGATGGTGGTATCCA.............................. 22 1 207.00 0.00 1.00 0.00 206.00 ......................................................................TGAACACAGCTGGTTGTAT................................. 19 1 205.00 0.00 1.00 0.00 204.00 ......................................................................TGGACACAGCTGGTGGTATCC............................... 21 1 197.00 0.00 4.00 0.00 193.00 ......................................................................TGAACACAGCTGGTGGTATCCAT............................. 23 1 190.00 0.00 6.00 0.00 184.00 ......................................................................TTAACACAGCTGGTGGTAT................................. 19 1 187.00 0.00 2.00 0.00 185.00 ......................................................................TGAACACAGCTGGAGGTATCC............................... 21 1 185.00 0.00 49.00 0.00 136.00 ......................................................................TGCACACAGCTGGTGGTATCC............................... 21 1 183.00 0.00 7.00 0.00 176.00 ......................................................................TGAACACAGCTGCTGGTATCC............................... 21 1 179.00 0.00 6.00 0.00 173.00 ......................................................................TGAACACAGCCGGTGGTATCC............................... 21 1 178.00 0.00 7.00 0.00 171.00 ......................................................................TGAACACAGCTxGTGGTATCC............................... 20 1 176.00 0.00 2.00 0.00 174.00 ......................................................................TGAACACAGCTAGTGGTATCC............................... 21 1 168.00 0.00 51.00 0.00 117.00 ......................................................................TGAACACAGCTGGTGGTACCC............................... 21 1 167.00 0.00 12.00 0.00 155.00 ......................................................................TGAACACATCTGGTGGTAT................................. 19 1 154.00 0.00 1.00 0.00 153.00 ......................................................................TGAACACAGCTTGTGGTAT................................. 19 1 152.00 0.00 1.00 0.00 151.00 ......................................................................TGAACACAGCTGGTGCTATCC............................... 21 1 151.00 0.00 6.00 0.00 145.00 ............................TGGGATACACCCTGTGCTCG.......................................................................... 20 1 145.00 0.00 76.00 0.00 69.00 ......................................................................TGAACACAGCTGGCGGTATC................................ 20 1 145.00 0.00 16.00 0.00 129.00 ......................................................................TGAACACAGCTGGTGGTAA................................. 19 2 71.50 0.00 9.00 0.00 62.50 ......................................................................TGAACACAGCTGGTGGTATACA.............................. 22 1 141.00 0.00 3.00 0.00 138.00 ......................................................................TGAACACAGCTGGTGGTATCCC.............................. 22 1 138.00 1.00 37.00 0.00 100.00 ......................................................................TGAACGCAGCTGGTGGTATCC............................... 21 1 137.00 0.00 14.00 0.00 123.00 ......................................................................TGAACACAGCTGGTGGTGTCC............................... 21 1 137.00 0.00 49.00 0.00 88.00 ......................................................................TGAxxACAGCTGGTGGTATCC............................... 19 1 134.00 0.00 5.00 0.00 129.00 ......................................................................TGAATACAGCTGGTGGTATCC............................... 21 1 133.00 0.00 13.00 0.00 120.00 ......................................................................TGAACACAGCTGGTAGTATCC............................... 21 1 131.00 0.00 19.00 0.00 112.00 ......................................................................TGAACACAGCTGGGGGTATC................................ 20 1 129.00 0.00 3.00 0.00 126.00 ......................................................................TGAACACAGCTCGTGGTATCC............................... 21 1 127.00 0.00 12.00 0.00 115.00 ......................................................................TGAACACAGCTGGTGTTATC................................ 20 1 127.00 0.00 12.00 0.00 115.00 ......................................................................TGAACACGGCTGGTGGTATCC............................... 21 1 123.00 0.00 9.00 0.00 114.00 ......................................................................TGAACATAGCTGGTGGTATCC............................... 21 1 119.00 0.00 12.00 0.00 107.00 ......................................................................TGAACACAGCTGGTCGTATCC............................... 21 1 115.00 0.00 10.00 0.00 105.00 ......................................................................TGAACACAGCTGTTGGTATC................................ 20 1 114.00 0.00 4.00 0.00 110.00 ......................................................................TGAACACAGCTGGTGATATCC............................... 21 1 113.00 0.00 13.00 0.00 100.00 ......................................................................TGAACACAGCTGGTGGGATCC............................... 21 1 113.00 0.00 36.00 0.00 77.00 ......................................................................TGAACACAGCTGGCGGTATCCA.............................. 22 1 112.00 0.00 5.00 0.00 107.00 ......................................................................TGAACACAGCTGGTGGTATCCTT............................. 23 1 111.00 0.00 3.00 0.00 108.00 ......................................................................TGAACACAGCTGGGGGTATCCA.............................. 22 1 111.00 0.00 2.00 0.00 109.00 ......................................................................TGAACACAGCTGGTGGTATTC............................... 21 1 110.00 0.00 12.00 0.00 98.00 ......................................................................TGAACACAGCTGGTGGTT.................................. 18 1 102.00 1.00 1.00 0.00 100.00 ......................................................................TGAACACAGCTGGTGGTCTCC............................... 21 1 100.00 0.00 25.00 0.00 75.00 ......................................................................TGAACACAGATGGTGGTAT................................. 19 1 99.00 0.00 0.00 0.00 99.00 ......................................................................TGAACACAGCTGTTGGTATCCA.............................. 22 1 98.00 0.00 0.00 0.00 98.00 ......................................................................TAAACACAGCTGGTGGTATCC............................... 21 1 96.00 0.00 10.00 0.00 86.00 ......................................................................TGAACACCGCTGGTGGTATCC............................... 21 1 95.00 0.00 11.00 0.00 84.00 .......................................................................GAACACAGCTGGTGGTATCC............................... 20 1 95.00 0.00 9.00 0.00 86.00 ......................................................................TGAACAAAGCTGGTGGTATCCA.............................. 22 1 93.00 1.00 3.00 0.00 89.00 ......................................................................TGAACAAAGCTGGTGGTATC................................ 20 1 93.00 0.00 2.00 0.00 91.00 ......................................................................TGAACACAGCTGGTGTTATCCA.............................. 22 1 91.00 0.00 2.00 0.00 89.00 ......................................................................TGAACACAGCTGGTxGTATCC............................... 20 1 88.00 0.00 2.00 0.00 86.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTG........................... 25 1 87.00 0.00 2.00 0.00 85.00 ......................................................................TGAGCACAGCTGGTGGTATCCA.............................. 22 1 86.00 0.00 5.00 0.00 81.00 ......................................................................TGAACACAACTGGTGGTATCC............................... 21 1 85.00 0.00 7.00 0.00 78.00 ......................................................................TGAACACAGCTGGTGGTATTT............................... 21 1 84.00 0.00 11.00 0.00 73.00 ......................................................................TGAACACAGCTGGTGGTATCCAC............................. 23 1 84.00 0.00 4.00 0.00 80.00 ......................................................................TGAACACAGCTGGTGGCATC................................ 20 1 84.00 0.00 16.00 0.00 68.00
13	scaffold_4784:17757293-17757312 -	9.17	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA A------------------------------------------------TTTGAATGAGGCACTTGCA------------------------------------------------------ Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
5	scf7180000454104:911442-911563 -	90.3	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCTGATTGTCCATGTGCAACTGCCGTTGGGATACACCCTGTGCTCGCTTTGAATACAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCAGCTCCAGA Size Hit Count Total Norm

droEug1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000409470:249850-249971 +	88.76	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT-TGGCATCCTTGCTGCACCACA AAGCAAAATTTTCATATGCATCTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCATTGGCCGTTCTTGCATCCTTGCAGCTCCA-T Size Hit Count Total Norm
3	scf7180000408932:1020-1074 -	23.71	AAGC----GAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAATTGATGGATATTCAA---GGAGATATCGATGTGCTAAATCCTGTGAATGATTTAA-------------------------------------------------------------------- Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scf7180000302402:3413519-3413639 +	87.79	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGC-----TGCACCACA AAGCGCCACTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAACTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTACGCATCCTTGCACCCTTGC------ Size Hit Count Total Norm

droTak1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
4	scf7180000415245:189216-189336 -	91.86	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCAAAATTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATAAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTCGGCATCCTTGCAGCTCCAG- Size Hit Count Total Norm

droEle1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
12	scf7180000490967:813799-813919 -	91.86	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCTGAATTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATAAACTGCA-GCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCAGCTCCAGA Size Hit Count Total Norm
7	scf7180000491011:273420-273451 +	13.33	AAGCGAAT---------TTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAAAAAATGATATGAAAATTTCATATACAATT--------------------------------------------------------------------------------------------------- Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000779228:16083-16203 +	91.86	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCTAAATTTTCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCAGCTCCAGA Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
6	scf7180000302706:2168719-2168840 +	81.97	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT-TGGCATCCTT---GCTGCACCACA AAGC---TTTTCCATGTGCAACTGCCAGTGGGATACACCCTGTGCTCGCTTTGAA-AAACCGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTAGCATAATTTCAACTGCAGCGAG Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
2	scaffold_13340:6479980-6480089 +	74.39	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA AAGCTCATTT---GTGTGCATCGGCTGCTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTGCATCCTTTC--------- Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ......................................................................TGAACACAGCTGGTGGTATCC............................... 21 1 77559.00 4821.00 63644.00 9080.00 14.00 ......................................................................TGAACACAGCTGGTGGTATCCA.............................. 22 1 31530.00 1079.00 29093.00 1348.00 10.00 ......................................................................TGAACACAGCTGGTGGTATC................................ 20 1 29367.00 2375.00 22750.00 4235.00 7.00 ......................................................................TGAACACAGCTGGTGGTAT................................. 19 1 20840.00 1973.00 13767.00 5097.00 3.00 ......................................................................TGAACACAGCTGGTGGTATCCT.............................. 22 1 3127.00 296.00 2652.00 179.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCT............................... 21 1 2124.00 320.00 1278.00 526.00 0.00 ............................TGGGATACACCCTGTGCTCGCT........................................................................ 22 1 1969.00 159.00 1388.00 420.00 2.00 ......................................................................TGAACACAGCTGGTGGTATCA............................... 21 1 1281.00 122.00 1003.00 156.00 0.00 ......................................................................TGAACACAGCTGGTGGTATT................................ 20 1 1165.00 208.00 670.00 287.00 0.00 ......................................................................TGAACACATCTGGTGGTATCC............................... 21 1 1074.00 41.00 1021.00 12.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCAGT............................ 24 1 1024.00 92.00 829.00 103.00 0.00 ......................................................................TGAACACAGATGGTGGTATCC............................... 21 1 783.00 40.00 725.00 18.00 0.00 ......................................................................TGAACACAGCTGGTGGTA.................................. 18 1 697.00 7.00 575.00 115.00 0.00 ............................TGGGATACACCCTGTGCTCGC......................................................................... 21 1 565.00 38.00 481.00 46.00 0.00 ......................................................................TGAACACATCTGGTGGTATCCA.............................. 22 1 526.00 8.00 517.00 1.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCAC............................. 23 1 431.00 14.00 411.00 6.00 0.00 ......................................................................TGAACACATCTGGTGGTATC................................ 20 1 375.00 23.00 346.00 6.00 0.00 ......................................................................TGAACACAGATGGTGGTATCCA.............................. 22 1 359.00 6.00 348.00 5.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCG............................... 21 1 317.00 62.00 200.00 55.00 0.00 ......................................................................TTAACACAGCTGGTGGTATCC............................... 21 1 293.00 23.00 262.00 8.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTT........................... 25 1 289.00 19.00 255.00 15.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCAG............................. 23 1 287.00 33.00 240.00 14.00 0.00 ......................................................................TGGACACAGCTGGTGGTATCC............................... 21 1 285.00 2.00 266.00 17.00 0.00 ......................................................................TGAACACAGATGGTGGTATC................................ 20 1 278.00 19.00 252.00 7.00 0.00 .....................................................................GTGAACACAGCTGGTGGTAT................................. 20 1 277.00 5.00 252.00 19.00 1.00 ......................................................................TGAACACAGCTGGTGGCATCC............................... 21 1 275.00 8.00 170.00 97.00 0.00 ......................................................................TGAACACATCTGGTGGTAT................................. 19 1 271.00 27.00 241.00 3.00 0.00 ......................................................................TGAACACAGCTGGCGGTATCC............................... 21 1 271.00 13.00 138.00 120.00 0.00 ......................................................................TGAACACAGCTGGTTGTATCC............................... 21 1 243.00 4.00 224.00 15.00 0.00 ..................................................TTGAATGAAATGCAAGCAAG.................................................... 20 1 225.00 66.00 113.00 46.00 0.00 ......................................................................TGAACACAGCTTGTGGTATCC............................... 21 1 218.00 22.00 191.00 5.00 0.00 ......................................................................TGAACACAGATGGTGGTAT................................. 19 1 206.00 18.00 173.00 15.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCAA.............................. 22 1 205.00 12.00 191.00 2.00 0.00 ......................................................................TGAACACAGCTGGTGGTATA................................ 20 1 188.00 16.00 136.00 36.00 0.00 ............................TGGGATACACCCTGTGCTCG.......................................................................... 20 1 185.00 108.00 24.00 53.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCAT............................. 23 1 184.00 16.00 162.00 6.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCTT............................. 23 1 179.00 20.00 153.00 6.00 0.00 ......................................................................TGAACACAGCTGGTGGTATAC............................... 21 1 174.00 4.00 154.00 16.00 0.00 ......................................................................TGAACACAGCTGGTGGTATTT............................... 21 1 160.00 54.00 54.00 51.00 1.00 ......................................................................TGAACACAGCTGGTGGGATCC............................... 21 1 152.00 2.00 65.00 85.00 0.00 ......................................................................TGAACACAGCTGGTGTTATCC............................... 21 1 146.00 16.00 120.00 10.00 0.00 ......................................................................TGAACACAGCTGGTGGTAG................................. 19 1 144.00 5.00 115.00 24.00 0.00 ......................................................................TGAACACAGCTGGAGGTATCC............................... 21 1 142.00 17.00 23.00 102.00 0.00 ......................................................................TTAACACAGCTGGTGGTATCCA.............................. 22 1 130.00 5.00 125.00 0.00 0.00 ......................................................................CGAACACAGCTGGTGGTATCC............................... 21 1 130.00 1.00 110.00 19.00 0.00 ......................................................................TGAACACAGCTGGTGGAATCC............................... 21 1 128.00 1.00 89.00 38.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCTA.............................. 22 1 127.00 11.00 110.00 5.00 1.00 ......................................................................TGAACACAGCTGGCGGTATC................................ 20 1 123.00 3.00 63.00 57.00 0.00 ......................................................................TGAACACAGCTTGTGGTATCCA.............................. 22 1 121.00 7.00 113.00 1.00 0.00 ......................................................................TGAACACAGCTGGGGGTATCC............................... 21 1 118.00 7.00 23.00 88.00 0.00 ......................................................................TGAGCACAGCTGGTGGTATCC............................... 21 1 118.00 5.00 99.00 14.00 0.00 ......................................................................TGGACACAGCTGGTGGTATCCA.............................. 22 1 115.00 0.00 112.00 3.00 0.00 ......................................................................TGAACACAGCTGCTGGTATCC............................... 21 1 113.00 19.00 73.00 21.00 0.00 ......................................................................TGAACACAGCTGGTGGCATC................................ 20 1 113.00 5.00 47.00 61.00 0.00 .....................................................................GTGAACACAGCTGGTGGTATC................................ 21 1 111.00 2.00 104.00 5.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCTT.............................. 22 1 108.00 28.00 54.00 26.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCAGTA........................... 25 1 108.00 5.00 102.00 1.00 0.00 ......................................................................TGGACACAGCTGGTGGTATC................................ 20 1 107.00 1.00 99.00 7.00 0.00 ......................................................................TGAACACAGCTTGTGGTATC................................ 20 1 105.00 16.00 83.00 6.00 0.00 ......................................................................TTAACACAGCTGGTGGTATC................................ 20 1 105.00 4.00 100.00 1.00 0.00 ......................................................................TGAACACAGCTGGTGGTAA................................. 19 1 102.00 9.00 72.00 21.00 0.00 ......................................................................TGAACACAGCTGGTGGCATCCA.............................. 22 1 101.00 4.00 80.00 17.00 0.00 ......................................................................TGAACACAGCTGGCGGTAT................................. 19 1 100.00 3.00 30.00 67.00 0.00 ......................................................................TGAACACAGCTxGTGGTATCC............................... 20 1 99.00 4.00 94.00 1.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCGA.............................. 22 1 98.00 9.00 85.00 4.00 0.00 ......................................................................TGAACACAGCTGTTGGTATCC............................... 21 1 98.00 13.00 66.00 19.00 0.00 ......................................................................TGAACACAGCCGGTGGTATCC............................... 21 1 95.00 5.00 67.00 23.00 0.00 ......................................................................TGAACACAGCTGGTGGCAT................................. 19 1 94.00 4.00 30.00 60.00 0.00 ......................................................................TGAACACAGCTAGTGGTATCC............................... 21 1 94.00 30.00 52.00 12.00 0.00 ......................................................................TGAACACAGCTGGTGGTGTCC............................... 21 1 93.00 1.00 57.00 35.00 0.00 ......................................................................TGAACACAGCTGGCGGTATCCA.............................. 22 1 92.00 6.00 76.00 10.00 0.00 ......................................................................TGAACACAGCTGGTGGTATTC............................... 21 1 92.00 4.00 66.00 22.00 0.00 ......................................................................TGAACACAGCTGGTTGTATC................................ 20 1 90.00 4.00 77.00 9.00 0.00 ......................................................................TGAACACAGCTGGTAGTATCC............................... 21 1 88.00 1.00 72.00 15.00 0.00 ......................................................................TGAACACAGCTGGTGCTATCC............................... 21 1 85.00 15.00 51.00 19.00 0.00 ......................................................................TGAACACAGCTGGTGGTACCC............................... 21 1 83.00 5.00 62.00 16.00 0.00 ......................................................................TGAACGCAGCTGGTGGTATCC............................... 21 1 82.00 4.00 65.00 13.00 0.00 ......................................................................TGAACACAGCTCGTGGTATCC............................... 21 1 80.00 16.00 35.00 29.00 0.00 ......................................................................TGAACACAGCTTGTGGTAT................................. 19 1 79.00 5.00 67.00 7.00 0.00 ......................................................................TGAACACGGCTGGTGGTATCC............................... 21 1 77.00 2.00 59.00 16.00 0.00 ......................................................................TGAACACAGCTGGTTGTATCCA.............................. 22 1 77.00 1.00 76.00 0.00 0.00 ......................................................................TGAACACAGCTGGTGGTT.................................. 18 1 76.00 0.00 63.00 13.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCATT............................ 24 1 76.00 4.00 71.00 1.00 0.00 ......................................................................TGAACACAGCTGGTGGTATG................................ 20 1 75.00 4.00 59.00 12.00 0.00 ......................................................................TGAGCACAGCTGGTGGTATCCA.............................. 22 1 73.00 2.00 67.00 4.00 0.00 ......................................................................TGAACACAGCTGATGGTATCC............................... 21 1 72.00 23.00 40.00 9.00 0.00 ......................................................................TGAACACAGCTGGTGGAATCCA.............................. 22 1 70.00 0.00 64.00 6.00 0.00 ......................................................................TGAACAAAGCTGGTGGTATCC............................... 21 1 70.00 4.00 43.00 23.00 0.00 ......................................................................TGAACACAGCTGGTGGGATCCA.............................. 22 1 70.00 1.00 60.00 9.00 0.00 ......................................................................TGAAAACAGCTGGTGGTATCC............................... 21 1 70.00 1.00 29.00 40.00 0.00 ......................................................................TGAxxACAGCTGGTGGTATCC............................... 19 1 68.00 2.00 66.00 0.00 0.00 ......................................................................TGAACACAGCTGGAGGTAT................................. 19 1 68.00 12.00 5.00 51.00 0.00 ......................................................................TGAACACAGCTGGTGGTATCCC.............................. 22 1 68.00 5.00 32.00 31.00 0.00 ......................................................................TGAACACAGCTGGTTGTAT................................. 19 1 68.00 9.00 56.00 3.00 0.00 ......................................................................TGAACACAGCTGGTGGTTT................................. 19 1 66.00 10.00 30.00 26.00 0.00 ......................................................................TAAACACAGCTGGTGGTATCC............................... 21 1 64.00 14.00 37.00 13.00 0.00 ......................................................................TGAACACAGCTGGTGGGAT................................. 19 1 64.00 1.00 14.00 49.00 0.00 ......................................................................TGAACACAGCTGGGGGTAT................................. 19 1 63.00 1.00 4.00 58.00 0.00 .....................................................................CTGAACACAGCTGGTGGTATCC............................... 22 1 60.00 3.00 42.00 15.00 0.00 ......................................................................TGAACACAGCTGGAGGTATC................................ 20 1 59.00 7.00 7.00 45.00 0.00 ......................................................................TGAACACAGCTGGTGTTATC................................ 20 1 57.00 9.00 43.00 5.00 0.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000396708:2369070-2369182 -	73.33	AAGCGAATTTTCCATATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCACA GAAAAGCTCCTTTGTGTGCATCTGCTGCTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTGCATCCTTTC--------- Size Hit Count Total Norm

dp4 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
15	chr2:5029980-5030116 -	63.94	AAGCGAATTTTCCAT-------------ATGCAACTGCCATTGGGATACACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTGGCATCCTTGCTGCACCA----C-A AAGC---TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATACACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTTCTGCAACAATGCAACATCAGCAACAA Size Hit Count Total Norm V112 Male body V043 Embryo V051 Head M022 Male body ...................................................................................TGAACACAGCTGGTGGTATCC.................................... 21 1 14304.00 1562.00 32.00 7071.00 5639.00 ...................................................................................TGAACACAGCTGGTGGTATCCAAT................................. 24 1 11133.00 2653.00 187.00 3906.00 4387.00 ...................................................................................TGAACACAGCTGGTGGTATC..................................... 20 1 10456.00 1906.00 27.00 5566.00 2957.00 ...................................................................................TGAACACAGCTGGTGGTAT...................................... 19 1 4610.00 1146.00 9.00 3231.00 224.00 ...................................................................................TGAACACAGCTGGTGGTATCCA................................... 22 1 2920.00 638.00 34.00 1536.00 712.00 .........................................TGGGATACACCCTGTGCTCGCT............................................................................. 22 1 671.00 97.00 22.00 552.00 0.00 ...................................................................................TGAACACAGCTGGTGGTATCT.................................... 21 1 453.00 112.00 0.00 254.00 87.00 ...................................................................................TGAACACAGCTGGTGGTATT..................................... 20 1 375.00 159.00 0.00 193.00 23.00 ...................................................................................TGAACACAGCTGGTGGTATCCAA.................................. 23 1 356.00 86.00 4.00 160.00 106.00 ...................................................................................TGAACACAGCTGGTGGTATCA.................................... 21 1 345.00 85.00 4.00 235.00 21.00 ...................................................................................TGAACACAGCTGGTGGTATCCACT................................. 24 1 195.00 4.00 0.00 37.00 154.00 ...................................................................................TGAACACAGCTGGTGGTATCCAATT................................ 25 1 173.00 67.00 3.00 76.00 27.00 ...................................................................................TGAACACAGCTGGTGGTATCCAAA................................. 24 1 134.00 48.00 6.00 57.00 23.00 ...................................................................................TGAACACAGCTGGTGGTATCCT................................... 22 1 129.00 32.00 0.00 31.00 66.00 ...................................................................................TGAACACAGCTGGTGGTA....................................... 18 1 123.00 3.00 0.00 73.00 47.00 ...................................................................................TGAACACAGCTGGTGGGATCC.................................... 21 1 101.00 1.00 0.00 21.00 79.00 ...................................................................................TGAACACAGCTGGCGGTATCC.................................... 21 1 75.00 3.00 1.00 67.00 4.00 ...................................................................................TGAACACAGCTGGTGGTATCCAAC................................. 24 1 69.00 6.00 2.00 8.00 53.00 ...................................................................................TGAACACAGCTGGTGGTATCCAGT................................. 24 1 63.00 2.00 1.00 7.00 53.00 .........................................TGGGATACACCCTGTGCTCG............................................................................... 20 1 62.00 31.00 0.00 31.00 0.00 .........................................TGGGATACACCCTGTGCTCGC.............................................................................. 21 1 62.00 34.00 0.00 28.00 0.00 ...................................................................................TGAACACAGCTGGAGGTATCC.................................... 21 1 61.00 0.00 0.00 52.00 9.00 ...................................................................................TGAACACAGCTGGGGGTATCC.................................... 21 1 60.00 1.00 0.00 25.00 34.00 ...................................................................................TGAACACAGCTGGTGGCATCC.................................... 21 1 57.00 4.00 0.00 45.00 8.00 ...................................................................................TGAACACAGCTGGGGGTATCCAAT................................. 24 1 55.00 7.00 0.00 11.00 37.00 ...................................................................................TGAACACAGCTGGCGGTATC..................................... 20 1 54.00 2.00 0.00 49.00 3.00 ...................................................................................TGAACACAGCTGGTGGGATCCAAT................................. 24 1 52.00 1.00 0.00 8.00 43.00 ...................................................................................TGAACACAGCTGGGGGTATC..................................... 20 1 49.00 0.00 0.00 12.00 37.00 ...................................................................................TGAACACAGCTGGTGGCATC..................................... 20 1 48.00 2.00 0.00 44.00 2.00 ...................................................................................TGAACACAGCTGGTGGTATA..................................... 20 1 47.00 14.00 0.00 32.00 1.00 ...................................................................................TGAACACAGCTGGTGGTATTT.................................... 21 1 45.00 30.00 0.00 12.00 3.00 ...................................................................................TGAACACAGCTGGTxxTATCCAAT................................. 22 1 44.00 3.00 0.00 0.00 41.00 ...................................................................................TGAACACAGCTGGTGGTATCCC................................... 22 1 43.00 11.00 0.00 24.00 8.00 ...................................................................................TGAACACAGCTGGAGGTATC..................................... 20 1 42.00 0.00 0.00 34.00 8.00 ...................................................................................TGAACACAGCTGGTGTTATCCAAT................................. 24 1 42.00 3.00 0.00 2.00 37.00 ...................................................................................TGAACACAGCTGTTGGTATCC.................................... 21 1 40.00 3.00 0.00 4.00 33.00 ...................................................................................TGAACACAGCTGGTGGTATCCAATA................................ 25 1 39.00 10.00 0.00 24.00 5.00 ...................................................................................TGAACACAGCTGGCGGTATCCAAT................................. 24 1 36.00 7.00 2.00 22.00 5.00 ...................................................................................TGAACACAGCTGGCGGTAT...................................... 19 1 35.00 4.00 0.00 31.00 0.00 ...................................................................................TGAACACAGCTGGTGGGATC..................................... 20 1 35.00 0.00 0.00 20.00 15.00 ...............................................................TTGAATATGGTGCAAGCAAG......................................................... 20 1 32.00 7.00 3.00 21.00 1.00 ...................................................................................TGAACACAGCTGCTGGTATC..................................... 20 1 29.00 2.00 0.00 5.00 22.00 ...................................................................................TGAACACAGCTGGTGGCATCCAAT................................. 24 1 28.00 6.00 0.00 16.00 6.00 ...................................................................................TGAACACAGCTGGTGGTATCCCAT................................. 24 1 27.00 1.00 9.00 17.00 0.00 ...................................................................................TGAACACAGCTGTTGGTATC..................................... 20 1 27.00 1.00 0.00 8.00 18.00 ...................................................................................TGAACACAGCTGGTGGAATCC.................................... 21 1 25.00 1.00 0.00 14.00 10.00 ...................................................................................TGAACACAGCTGGTGGCAT...................................... 19 1 24.00 1.00 0.00 23.00 0.00 ...................................................................................TGAACACAGCTGGAGGTATCCAAT................................. 24 1 24.00 0.00 3.00 14.00 7.00 ...................................................................................TGAACACAGCTGCTGGTATCC.................................... 21 1 23.00 0.00 0.00 5.00 18.00 ...................................................................................TGAACACAGCTGGTGGAATC..................................... 20 1 23.00 0.00 0.00 22.00 1.00 ...................................................................................TGAACACAGCTGGTGGTGTCC.................................... 21 1 23.00 1.00 0.00 21.00 1.00 ...................................................................................CGAACACAGCTGGTGGTATCC.................................... 21 1 21.00 1.00 0.00 13.00 7.00 ...................................................................................TGAACACAGCTxGTGGTATC..................................... 19 1 21.00 4.00 0.00 1.00 16.00 ...................................................................................TGAACACAGCTGGTTGTATCCAAT................................. 24 1 21.00 0.00 1.00 0.00 20.00 ...................................................................................TGAACACAGCTxGTGGTATCC.................................... 20 1 20.00 1.00 0.00 1.00 18.00 ...................................................................................TGAACACAGCTGGTGGGAT...................................... 19 1 20.00 1.00 0.00 19.00 0.00 ...................................................................................TGAACACAGCTGGTGTTATCC.................................... 21 1 20.00 2.00 0.00 8.00 10.00 ...................................................................................TGAACACAGCTGGTGCTATCCAAT................................. 24 1 19.00 2.00 0.00 1.00 16.00 ...................................................................................TGAACGCAGCTGGTGGTATCC.................................... 21 1 19.00 1.00 0.00 13.00 5.00 ...................................................................................TGAACACAGCTGGTGGTTT...................................... 19 1 19.00 4.00 0.00 9.00 6.00 ..................................................................................CTGAACACAGCTGGTGGTATCC.................................... 22 1 18.00 6.00 0.00 11.00 1.00 ...................................................................................TGAACACAGCTGGTGGTGTC..................................... 20 1 18.00 1.00 0.00 16.00 1.00 ...................................................................................TGCACACAGCTGGTGGTATCC.................................... 21 1 18.00 1.00 0.00 17.00 0.00 ...................................................................................TGAACACAGCTGGTGGTATCG.................................... 21 1 18.00 3.00 0.00 14.00 1.00 ...................................................................................TGAGCACAGCTGGTGGTATCC.................................... 21 1 18.00 2.00 0.00 12.00 4.00 ...................................................................................TGAACACAGCTGATGGTATCC.................................... 21 1 17.00 0.00 0.00 2.00 15.00 ...................................................................................TGGACACAGCTGGTGGTATCC.................................... 21 1 17.00 0.00 0.00 15.00 2.00 ...................................................................................TGAACACAGCTGGTGGTATCTT................................... 22 1 17.00 6.00 0.00 11.00 0.00 ...................................................................................TGAACACAGCTGxxGGTATCCAAT................................. 22 1 17.00 1.00 0.00 0.00 16.00 ...................................................................................TGAACACAGCTTGTGGTATCC.................................... 21 1 17.00 3.00 0.00 3.00 11.00 ...................................................................................TGAACACAGCTAGTGGTATCC.................................... 21 1 16.00 4.00 0.00 9.00 3.00 ...................................................................................TGCACACAGCTGGTGGTATC..................................... 20 1 15.00 0.00 0.00 15.00 0.00 ...................................................................................TGAACACAGCTGATGGTATC..................................... 20 1 15.00 0.00 0.00 5.00 10.00 ...................................................................................TGAACACAGCTGGTGGTAA...................................... 19 1 15.00 2.00 0.00 12.00 1.00 ...................................................................................TGAGCACAGCTGGTGGTATC..................................... 20 1 15.00 5.00 0.00 10.00 0.00 ...................................................................................TGAACACAGCTGGTGGTACCC.................................... 21 1 14.00 4.00 0.00 9.00 1.00 ...................................................................................TGAACACAGCTGGTGGTATAA.................................... 21 1 14.00 8.00 0.00 6.00 0.00 ...................................................................................TGAACACAGCTGGTGTTATC..................................... 20 1 14.00 2.00 0.00 4.00 8.00 ...................................................................................TGAAAACAGCTGGTGGTATCC.................................... 21 1 14.00 0.00 1.00 13.00 0.00 ...................................................................................TGAACACAGCTGGTTGTATCC.................................... 21 1 14.00 2.00 0.00 3.00 9.00 ...................................................................................TGAACACAGCTGGTGGTCTC..................................... 20 1 14.00 0.00 0.00 14.00 0.00 ...................................................................................TGAACACAGCTGGTCGTATC..................................... 20 1 14.00 0.00 0.00 7.00 7.00 ...................................................................................TGAACACAGCTGGTGGTATCCAC.................................. 23 1 14.00 2.00 0.00 3.00 9.00 ...................................................................................TGAACACAGCTGGTGCTATC..................................... 20 1 14.00 1.00 0.00 10.00 3.00 ...................................................................................TGAACACAGCTGGTGGTATCCATT................................. 24 1 14.00 0.00 1.00 13.00 0.00 ...................................................................................TGAACACAGCTGGAGGTAT...................................... 19 1 14.00 0.00 0.00 14.00 0.00 ...................................................................................TGAACACAGCTGGGGGTAT...................................... 19 1 13.00 0.00 0.00 12.00 1.00 ...................................................................................TGAACACAGCTGATGGTATCCAAT................................. 24 1 13.00 0.00 0.00 4.00 9.00 ...................................................................................TGAACACAGCTGCTGGTATCCAAT................................. 24 1 13.00 3.00 0.00 3.00 7.00 ...................................................................................TGAACACAGCTGGTGGTATCCAAAA................................ 25 1 13.00 7.00 0.00 6.00 0.00 ...................................................................................TGAACACAGCTGGTxGTATC..................................... 19 1 13.00 2.00 0.00 1.00 10.00 ...................................................................................TGAACACAGCTGGCGGCATCC.................................... 21 1 13.00 0.00 0.00 13.00 0.00 ...................................................................................TGAACACAGCTGGTGGTATCCGAT................................. 24 1 13.00 0.00 0.00 13.00 0.00 ...................................................................................TGAACACAGCTGGTTGTATC..................................... 20 1 13.00 2.00 0.00 3.00 8.00 ...................................................................................TGAACACAGCTAGTGGTATCCAAT................................. 24 1 12.00 3.00 0.00 8.00 1.00 ...................................................................................TGAACACAGCTGGTGCTATCC.................................... 21 1 12.00 1.00 0.00 8.00 3.00 ..................................................................................CTGAACACAGCTGGTGGTATCCAAT................................. 25 1 12.00 7.00 1.00 3.00 1.00 ...................................................................................TGAACACATCTGGTGGTATC..................................... 20 1 12.00 1.00 0.00 6.00 5.00 ...................................................................................TGAACACAGCTCGTGGTATCC.................................... 21 1 12.00 1.00 0.00 6.00 5.00 ...................................................................................TGAAAACAGCTGGTGGTATCCAAT................................. 24 1 11.00 0.00 3.00 8.00 0.00 ...................................................................................TGAACACAGCTGGGGGTATCCA................................... 22 1 11.00 1.00 0.00 5.00 5.00

droPer1 - 2 hits found