dme-mir-317- 12- and 20-way alignments

dme-mir-317	chr3R:5916848-5916939 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 5916903-5916923
   star strand at position 5916861-5916882
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3R:5916833-5916954 +	AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTGC---------------TGCACCACA
droSim1	chr3R:15459128-15459249 -	AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCCTTTGC---------------TGCTCCA-C
droSec1	super_0:15996574-15996694 -	AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTGC---------------TGCTCCA-C
droYak2	chr3R:9963959-9964079 +	AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TTGC---------------TGCTCCA-G
droEre2	scaffold_4770:15683457-15683577 -	AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TTGC---------------TGCTCCA-G
droAna3	scaffold_13340:6479980-6480097 +	AAGCT------CATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TTTC---------------AACTTCA-A
dp4	chr2:5029986-5030116 -	AAGCT---------CTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-ATGc---------------aacatca-g
droPer1	super_19:735499-735629 -	AAGCT---------CTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-ATGc---------------aacatca-g
droWil1	scaffold_181089:11180050-11180176 -	AAGCTTTCTAGATTCTTC---------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTGCATCC-ATGC---------------AACACCA-A
droVir3	scaffold_12855:2698509-2698638 -	AAGCT---------TTTTC--------------AGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTggtatccagtggccgtt---ggcagccaatgcaacaattgcaacaactgcaaca-a
droMoj3	scaffold_6540:11898846-11898962 -	AAGCT--------TTCTCTC-------------TGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTT-TATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAATGc---------------aacaaca-g
droGri2	scaffold_14624:2253112-2253239 +	AAGCT---------TTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGCAC-ATgcaacaa---caac---aacaaga-g

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3R:5916833-5916954 +	NA	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCTGCACCAC--------------A
droSim1	chr3R:15459127-15459249 -	1	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTTGCTGCTCCAC--------------A
droSec1	super_0:15996573-15996694 -	4	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCTGCTCCAC--------------A
droYak2	chr3R:9963959-9964079 +	3	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------
droEre2	scaffold_4770:15683457-15683577 -	11	AAGCG-A-------ATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TT-GCTGCTCCAG---------------
droEug1	scf7180000409470:249850-249971 +	2	AAGCA-A-------AATTTTCA-------------TATGCATCTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCATTGGCCGTTC-TTGCATCC-TT-GCAGCTCCAT---------------
droBia1	scf7180000302402:3413519-3413639 +	2	AAGCG-C-------CACTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAACTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--ACGCATCC-TT-GCACCCTTGC---------------
droTak1	scf7180000415245:189216-189336 -	4	AAGCA-A-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAATTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--CGGCATCC-TT-GCAGCTCCAG---------------
droEle1	scf7180000490967:813799-813919 -	12	AAGCT-G-------AATTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droRho1	scf7180000779228:16083-16203 +	1	AAGCT-A-------AATTTTCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATAAACTGC-AGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droFic1	scf7180000454104:911442-911563 -	5	AAGCT-G-------ATTGTCCA-------------TGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATACAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TT-GCAGCTCCAG--------------A
droKik1	scf7180000302706:2168719-2168840 +	6	AAGC-----------TTTTCCA-------------TGTGCAACTGCCAGTGGGATAC-ACCCTGTGCTCGCTTTGAA-AAACCGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTT-TAGCATAA-TT-TCAACTGCAGC---------GA--G
droAna3	scaffold_13340:6479980-6480089 +	2	AAGCT-C-------ATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------
droBip1	scf7180000396708:2369070-2369182 -	1	GAAAA-G-------CTCCTTTG-------------TGTGCATCTGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TT-TC-----------------------
dp4	chr2:5029980-5030116 -	15	AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAGC---------AACAA
droPer1	super_9257:397-527 -	20	AAGC-----------TCTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-AT-GCAACATCAG---------------
droWil1	scaffold_181089:11180051-11180176 -	52	AAGCT-T-TCTAGATTCTT--C-------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTGCATCC-AT-GCAACACCA----------------
droVir3	scaffold_12855:2698510-2698638 -	66	AAGC-----------TTTTTCA--------------GTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT---GGCAGCCAAT-GCAACAATTGCAACAACTGCAAC-A
droMoj3	scaffold_6540:11898843-11898966 -	85	GAGTAAGC------TTTCTCTC-------------TGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTTT-ATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAAT-GCAACAACAGC---------A---A
droGri2	scaffold_14624:2253109-2253242 +	9	AAAAA-G-------CTTTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGCAC-AT-GCAACAACAACAACAAGAGCA---A

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTGC---------------TGCACCACA

Size

Hit Count

Total Norm

droSim1

AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCCTTTGC---------------TGCTCCA-C	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	1829110.00	56.00	1688359.00	133801.00	6894.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	934481.00	9.00	798867.00	127913.00	7692.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	378362.00	12.00	344492.00	32554.00	1304.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	269483.00	3.00	215584.00	52390.00	1506.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	131200.00	51.00	115397.00	15234.00	518.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	110938.00	5.00	105350.00	4817.00	766.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	88821.00	0.00	70440.00	17316.00	1065.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	75683.00	0.00	67208.00	7905.00	570.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	73312.00	1.00	50975.00	22086.00	250.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	43865.00	3.00	35089.00	8461.00	312.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	41827.00	0.00	33801.00	7865.00	161.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	24821.00	1.00	22394.00	2343.00	83.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	14952.00	0.00	13616.00	1253.00	83.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	14217.00	0.00	13093.00	1083.00	41.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	13970.00	1.00	13171.00	731.00	67.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	9587.00	0.00	8873.00	682.00	32.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	9327.00	0.00	8615.00	674.00	38.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	8696.00	0.00	7956.00	702.00	38.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	7321.00	0.00	6593.00	687.00	41.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	6572.00	0.00	6007.00	527.00	38.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	5945.00	0.00	5296.00	635.00	14.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	5573.00	0.00	4771.00	781.00	21.00
..........................................................................................TGAACACAGCTGGTGGTAC...................................................	19	1	4977.00	0.00	4740.00	211.00	26.00
..........................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	4716.00	0.00	4018.00	677.00	21.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	4461.00	0.00	4077.00	360.00	24.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	4304.00	0.00	3609.00	669.00	26.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	3896.00	0.00	3625.00	255.00	16.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	3445.00	0.00	2853.00	570.00	22.00
..........................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	3294.00	0.00	2973.00	310.00	11.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	3258.00	0.00	3040.00	203.00	15.00
..........................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	3253.00	0.00	2963.00	279.00	11.00
..........................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	3159.00	0.00	2939.00	205.00	15.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	2922.00	1.00	2682.00	226.00	13.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	2886.00	0.00	2662.00	213.00	11.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	2801.00	0.00	2418.00	371.00	12.00
..........................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	2569.00	0.00	2288.00	249.00	32.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	2416.00	0.00	2199.00	207.00	10.00
..........................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	2300.00	0.00	2153.00	135.00	12.00
..........................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	2292.00	0.00	2087.00	191.00	14.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	2264.00	0.00	2115.00	138.00	11.00
..........................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	2102.00	0.00	1808.00	269.00	25.00
..........................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	2048.00	0.00	1779.00	245.00	24.00
..........................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	1985.00	0.00	1433.00	543.00	9.00
..........................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	1842.00	0.00	1681.00	151.00	10.00
..........................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	1822.00	0.00	1697.00	113.00	12.00
..........................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	1762.00	0.00	1647.00	111.00	4.00
..........................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	1752.00	0.00	1474.00	268.00	10.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	1648.00	0.00	1503.00	143.00	2.00
..........................................................................................TGAACACAGCTGGTGGAATCCAGT..............................................	24	1	1561.00	0.00	1316.00	233.00	12.00
..........................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	1542.00	0.00	1181.00	350.00	11.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	1528.00	0.00	1413.00	110.00	5.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	1504.00	0.00	1386.00	113.00	5.00
..........................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	1440.00	0.00	1343.00	90.00	7.00
..........................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	1414.00	0.00	1265.00	135.00	14.00
..........................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	1412.00	0.00	1283.00	119.00	10.00
..........................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	1359.00	0.00	1288.00	66.00	5.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	1313.00	0.00	1198.00	110.00	5.00
..........................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	1214.00	0.00	1011.00	192.00	11.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	1213.00	0.00	1089.00	117.00	7.00
..........................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	1204.00	0.00	1012.00	180.00	12.00
..........................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	1179.00	0.00	1053.00	115.00	11.00
..........................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	1158.00	0.00	1012.00	144.00	2.00
..........................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	1129.00	0.00	1061.00	62.00	6.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	1100.00	0.00	999.00	100.00	1.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	1065.00	0.00	956.00	106.00	3.00
..........................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	1056.00	0.00	964.00	89.00	3.00
..........................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	1040.00	0.00	927.00	113.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	1018.00	0.00	881.00	130.00	7.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	1007.00	0.00	957.00	49.00	1.00
..........................................................................................TGAACACAGCTGGTCGTATCCAGT..............................................	24	1	1004.00	0.00	886.00	102.00	16.00
..........................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	995.00	0.00	761.00	226.00	8.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	989.00	0.00	911.00	75.00	3.00
..........................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	973.00	0.00	801.00	167.00	5.00
..........................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	972.00	0.00	897.00	64.00	11.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	963.00	0.00	847.00	76.00	40.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	953.00	0.00	875.00	33.00	45.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGAA.............................................	25	1	945.00	0.00	581.00	359.00	5.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	931.00	0.00	867.00	62.00	2.00
..........................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	928.00	0.00	816.00	101.00	11.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	918.00	0.00	655.00	259.00	4.00
..........................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	905.00	0.00	847.00	54.00	4.00
..........................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	890.00	0.00	813.00	69.00	8.00
..........................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	888.00	0.00	763.00	117.00	8.00
..........................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	888.00	0.00	745.00	140.00	3.00
..........................................................................................TGAACACAGCTGGTGGTAG...................................................	19	1	876.00	0.00	796.00	72.00	8.00
..........................................................................................TGAACACACCTGGTGGTATCCAGT..............................................	24	1	858.00	0.00	758.00	87.00	13.00
..........................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	852.00	0.00	765.00	82.00	5.00
..........................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	838.00	0.00	782.00	53.00	3.00
..........................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	817.00	0.00	689.00	122.00	6.00
..........................................................................................TGAACACAGCTxxTGGTATC..................................................	18	1	814.00	0.00	739.00	74.00	1.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	814.00	0.00	747.00	65.00	2.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	796.00	0.00	684.00	108.00	4.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	792.00	0.00	731.00	58.00	3.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	766.00	0.00	698.00	65.00	3.00
..........................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	713.00	0.00	653.00	58.00	2.00
..........................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	708.00	0.00	599.00	101.00	8.00
..........................................................................................TGAACACAGCTTGTGGTATCCAGT..............................................	24	1	698.00	0.00	584.00	110.00	4.00
..........................................................................................TGAACACAGCTGGxGGTATCC.................................................	20	1	691.00	0.00	658.00	31.00	2.00
..........................................................................................TGAACACAGCTGCTGGTATCCAGT..............................................	24	1	688.00	0.00	613.00	60.00	15.00
..........................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	683.00	0.00	657.00	21.00	5.00
..........................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	678.00	0.00	636.00	36.00	6.00

droSec1

AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCATCC-TTGC---------------TGCTCCA-C	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	103780.00	7099.00	356.00	96325.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	35851.00	3072.00	111.00	32668.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	33693.00	1611.00	54.00	32028.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	31980.00	2519.00	100.00	29361.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	3111.00	5.00	6.00	3100.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	2202.00	299.00	4.00	1899.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	2171.00	163.00	1.00	2007.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	1897.00	306.00	63.00	1528.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1498.00	138.00	1.00	1359.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1131.00	105.00	2.00	1024.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	1077.00	168.00	27.00	882.00
......................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	763.00	340.00	5.00	418.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	643.00	105.00	2.00	536.00
...............................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	596.00	124.00	10.00	462.00
..........................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	382.00	37.00	1.00	344.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	367.00	72.00	1.00	294.00
..........................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	340.00	79.00	0.00	261.00
..........................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	293.00	0.00	0.00	293.00
.........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	263.00	29.00	1.00	233.00
..........................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	219.00	20.00	0.00	199.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	198.00	15.00	2.00	181.00
.........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	190.00	10.00	0.00	180.00
...............................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	188.00	70.00	1.00	117.00
..........................................................................................TGAACACAGCTGGTGGTAACC.................................................	21	1	168.00	48.00	0.00	120.00
..........................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	168.00	0.00	0.00	168.00
..........................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	161.00	58.00	1.00	102.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	159.00	8.00	1.00	150.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	158.00	7.00	0.00	151.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	158.00	18.00	1.00	139.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	156.00	9.00	0.00	147.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	153.00	11.00	3.00	139.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	146.00	21.00	1.00	124.00
..........................................................................................TGAACACAGCTGGTGGTATAT.................................................	21	1	145.00	42.00	0.00	103.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	144.00	18.00	0.00	126.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	141.00	7.00	0.00	134.00
..........................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	133.00	7.00	0.00	126.00
..........................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	131.00	0.00	0.00	131.00
..........................................................................................TGAACACAGATGGTGGTATCC.................................................	21	1	129.00	3.00	0.00	126.00
.........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	125.00	6.00	1.00	118.00
..........................................................................................TGAACACAGCTGGTGGTATAA.................................................	21	1	117.00	37.00	2.00	78.00
..........................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	115.00	7.00	0.00	108.00
..........................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	112.00	3.00	0.00	109.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	111.00	8.00	0.00	103.00
..........................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	108.00	11.00	0.00	97.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	108.00	8.00	0.00	100.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	107.00	14.00	1.00	92.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	102.00	11.00	0.00	91.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	98.00	10.00	0.00	88.00
..........................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	93.00	4.00	0.00	89.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	93.00	4.00	0.00	89.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	92.00	9.00	0.00	83.00
..........................................................................................TTAACACAGCTGGTGGTATCC.................................................	21	1	91.00	3.00	0.00	88.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	89.00	5.00	1.00	83.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	87.00	10.00	0.00	77.00
..........................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	86.00	3.00	1.00	82.00
..........................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	85.00	4.00	1.00	80.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	83.00	4.00	0.00	79.00
..........................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	82.00	0.00	0.00	82.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	82.00	11.00	0.00	71.00
..........................................................................................TGAxxACAGCTGGTGGTATCC.................................................	19	1	81.00	7.00	2.00	72.00
..........................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	81.00	3.00	1.00	77.00
..........................................................................................AGAACACAGCTGGTGGTATCC.................................................	21	1	78.00	0.00	0.00	78.00
..........................................................................................TGAGCACAGCTGGTGGTATCCA................................................	22	1	78.00	4.00	0.00	74.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	76.00	5.00	0.00	71.00
..........................................................................................TGAACACAGCTGCTGGTAT...................................................	19	1	74.00	7.00	0.00	67.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	74.00	10.00	0.00	64.00
..........................................................................................TGAACACAGCTGGTGGTACC..................................................	20	1	71.00	26.00	0.00	45.00
..........................................................................................TGAACACAGCTxGTGGTATCCA................................................	21	1	70.00	7.00	0.00	63.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	69.00	10.00	1.00	58.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	69.00	3.00	0.00	66.00
..........................................................................................TGAACACAGCTGTTGGTAT...................................................	19	1	68.00	8.00	1.00	59.00
..........................................................................................TGAACACAACTGGTGGTATCC.................................................	21	1	67.00	3.00	0.00	64.00
..........................................................................................TGAACACAGCTGGTGGTAC...................................................	19	1	66.00	14.00	0.00	52.00
..........................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	66.00	3.00	2.00	61.00
..........................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	63.00	5.00	0.00	58.00
..........................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	62.00	4.00	0.00	58.00
..........................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	60.00	6.00	0.00	54.00
..........................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	1	60.00	6.00	0.00	54.00
..........................................................................................TGAACACAGCTGGTGGTAACCA................................................	22	1	60.00	27.00	0.00	33.00
..........................................................................................TGAACAAAGCTGGTGGTATCCA................................................	22	1	59.00	1.00	0.00	58.00
..........................................................................................TGAACACAGCTTGTGGTATCCA................................................	22	1	59.00	5.00	0.00	54.00
..........................................................................................TGAACAAAGCTGGTGGTATC..................................................	20	1	58.00	0.00	0.00	58.00
..........................................................................................TGAACACAGCTGGTGGTAAC..................................................	20	1	58.00	20.00	0.00	38.00
..........................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	57.00	4.00	0.00	53.00
..........................................................................................TGAACAAAGCTGGTGGTAT...................................................	19	1	56.00	0.00	0.00	56.00
..........................................................................................TGAATACAGCTGGTGGTATCC.................................................	21	1	56.00	2.00	1.00	53.00
..........................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	56.00	4.00	1.00	51.00
...............................................TGGGATAC-ACCCTGTGCTCGCTT.........................................................................................	23	1	55.00	10.00	1.00	44.00
.........................................................................................CTGAACACAGCTGGTGGTATC..................................................	21	1	55.00	3.00	0.00	52.00
..........................................................................................TGAACACCGCTGGTGGTATCC.................................................	21	1	55.00	7.00	1.00	47.00
..........................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	54.00	12.00	0.00	42.00
..........................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	54.00	7.00	1.00	46.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	54.00	3.00	0.00	51.00
..........................................................................................TGAxxACAGCTGGTGGTATCCA................................................	20	1	53.00	5.00	1.00	47.00
..........................................................................................TGAACACAGCTGGTGATATCC.................................................	21	1	52.00	3.00	1.00	48.00
..........................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	52.00	12.00	1.00	39.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	51.00	8.00	1.00	42.00
...........................................................................................GAACACAGCTGGTGGTATCC.................................................	20	1	51.00	4.00	1.00	46.00
..........................................................................................TCAACACAGCTGGTGGTATCC.................................................	21	1	51.00	7.00	0.00	44.00
..........................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	50.00	4.00	0.00	46.00
..........................................................................................TGAACACAGATGGTGGTAT...................................................	19	1	49.00	0.00	0.00	49.00

droYak2

AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TTGC---------------TGCTCCA-G	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	295874.00	19.00	8462.00	1965.00	17034.00	268394.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	278773.00	6.00	91.00	61.00	157.00	278458.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	63966.00	5.00	3705.00	1020.00	7247.00	51989.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	54301.00	0.00	16.00	34.00	38.00	54213.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	27508.00	4.00	1106.00	541.00	2156.00	23701.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	27184.00	0.00	1.00	0.00	1.00	27182.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	26870.00	0.00	0.00	0.00	0.00	26870.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	13913.00	1.00	9.00	15.00	20.00	13868.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	13818.00	0.00	3825.00	608.00	7588.00	1797.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	6177.00	0.00	5.00	2.00	6.00	6164.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	4876.00	0.00	1.00	2.00	1.00	4872.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	4422.00	0.00	114.00	82.00	256.00	3970.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	3273.00	0.00	0.00	0.00	1.00	3272.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	2984.00	0.00	14.00	15.00	127.00	2828.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	2397.00	0.00	7.00	0.00	38.00	2352.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	2337.00	0.00	22.00	1.00	128.00	2186.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	1432.00	0.00	1.00	2.00	27.00	1402.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	1426.00	0.00	2.00	5.00	2.00	1417.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1401.00	0.00	7.00	0.00	9.00	1385.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	1373.00	0.00	1.00	2.00	7.00	1363.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	1279.00	0.00	1.00	0.00	1.00	1277.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1272.00	0.00	205.00	52.00	361.00	654.00
..........................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	945.00	0.00	3.00	1.00	8.00	933.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	918.00	3.00	369.00	85.00	457.00	4.00
..........................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	814.00	0.00	0.00	0.00	0.00	814.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	758.00	0.00	12.00	12.00	58.00	676.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	758.00	0.00	38.00	11.00	124.00	585.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	747.00	0.00	11.00	3.00	16.00	717.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	655.00	0.00	13.00	2.00	13.00	627.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	654.00	0.00	125.00	25.00	226.00	278.00
..........................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	645.00	0.00	0.00	1.00	1.00	643.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	619.00	0.00	37.00	16.00	106.00	460.00
..........................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	616.00	0.00	0.00	0.00	0.00	616.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	603.00	0.00	101.00	1.00	200.00	301.00
..........................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	600.00	0.00	0.00	0.00	1.00	599.00
..........................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	574.00	0.00	1.00	0.00	1.00	572.00
..........................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	532.00	0.00	0.00	0.00	0.00	532.00
..........................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	522.00	0.00	3.00	1.00	18.00	500.00
..........................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	512.00	0.00	0.00	0.00	0.00	512.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	491.00	0.00	9.00	3.00	29.00	450.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	485.00	0.00	0.00	0.00	0.00	485.00
..........................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	480.00	0.00	0.00	1.00	0.00	479.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	473.00	0.00	95.00	54.00	247.00	77.00
..........................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	461.00	0.00	1.00	1.00	11.00	448.00
..........................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	421.00	0.00	0.00	0.00	0.00	421.00
..........................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	387.00	0.00	1.00	0.00	0.00	386.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	379.00	1.00	25.00	2.00	82.00	269.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	378.00	0.00	24.00	5.00	25.00	324.00
..........................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	370.00	0.00	0.00	0.00	0.00	370.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	365.00	0.00	25.00	1.00	105.00	234.00
......................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	363.00	0.00	59.00	87.00	199.00	18.00
..........................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	358.00	0.00	7.00	0.00	7.00	344.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	357.00	0.00	0.00	0.00	2.00	355.00
..........................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	353.00	0.00	4.00	1.00	15.00	333.00
..........................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	352.00	0.00	0.00	0.00	0.00	352.00
..........................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	340.00	0.00	0.00	4.00	2.00	334.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	339.00	0.00	0.00	0.00	1.00	338.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGG..............................................	24	1	336.00	0.00	0.00	0.00	0.00	336.00
..........................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	305.00	0.00	0.00	0.00	2.00	303.00
..........................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	305.00	0.00	0.00	1.00	0.00	304.00
..........................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	294.00	0.00	0.00	0.00	0.00	294.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGC..............................................	24	1	287.00	0.00	0.00	0.00	0.00	287.00
..........................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	286.00	0.00	0.00	0.00	5.00	281.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	283.00	0.00	6.00	3.00	4.00	270.00
..........................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	278.00	0.00	3.00	7.00	11.00	257.00
..........................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	277.00	0.00	1.00	2.00	4.00	270.00
..........................................................................................TGAACACAGCTGGTCGTATCCAGT..............................................	24	1	275.00	0.00	0.00	0.00	0.00	275.00
..........................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	275.00	0.00	0.00	0.00	1.00	274.00
..........................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	267.00	0.00	0.00	0.00	0.00	267.00
..........................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	256.00	0.00	1.00	0.00	2.00	253.00
..........................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	252.00	0.00	0.00	0.00	0.00	252.00
..........................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	250.00	0.00	2.00	0.00	5.00	243.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	247.00	0.00	25.00	2.00	95.00	125.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	244.00	0.00	8.00	2.00	23.00	211.00
..........................................................................................TGAACACACCTGGTGGTATCCAGT..............................................	24	1	240.00	0.00	0.00	0.00	2.00	238.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	233.00	0.00	30.00	0.00	14.00	189.00
..........................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	232.00	0.00	1.00	0.00	0.00	231.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	224.00	0.00	14.00	12.00	62.00	136.00
..........................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	219.00	0.00	5.00	3.00	10.00	201.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	215.00	0.00	11.00	4.00	53.00	147.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	210.00	0.00	13.00	0.00	26.00	171.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	208.00	0.00	30.00	3.00	81.00	94.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	206.00	0.00	6.00	0.00	39.00	161.00
..........................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	205.00	0.00	18.00	6.00	41.00	140.00
...............................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	201.00	0.00	59.00	45.00	96.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	200.00	0.00	11.00	2.00	20.00	167.00
..........................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	194.00	0.00	2.00	2.00	5.00	185.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	192.00	0.00	1.00	2.00	16.00	173.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	190.00	0.00	19.00	2.00	25.00	144.00
..........................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	173.00	0.00	0.00	0.00	0.00	173.00
..........................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	170.00	0.00	5.00	0.00	8.00	157.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGC..............................................	24	1	168.00	0.00	0.00	0.00	0.00	168.00
..........................................................................................TGAACACAGCTGCTGGTATCCAGT..............................................	24	1	167.00	0.00	0.00	0.00	0.00	167.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGG..............................................	24	1	165.00	0.00	0.00	0.00	0.00	165.00
..........................................................................................TGAACACAGCTTGTGGTATCCAGT..............................................	24	1	164.00	0.00	1.00	1.00	1.00	161.00
..........................................................................................TGAACACAGCTGGTGGTGTCCAGT..............................................	24	1	160.00	0.00	0.00	0.00	1.00	159.00
..........................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	157.00	0.00	16.00	6.00	46.00	89.00
..........................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	157.00	0.00	2.00	1.00	5.00	149.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	153.00	0.00	0.00	0.00	9.00	144.00
..........................................................................................CGAACACAGCTGGTGGTATCCAGT..............................................	24	1	147.00	0.00	0.00	0.00	0.00	147.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGTT.............................................	25	1	146.00	0.00	0.00	0.00	0.00	146.00

droEre2

AAGC------GAATTTTCCA-------------TATGCAACTGCCATTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGTCC-TTGC---------------TGCTCCA-G	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	151248.00	37.00	13034.00	240.00	137937.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	47791.00	21.00	3769.00	112.00	43889.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	39468.00	36.00	1715.00	143.00	37574.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	21473.00	4.00	1878.00	74.00	19517.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	3413.00	8.00	810.00	2.00	2593.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	3135.00	1.00	137.00	7.00	2990.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	2531.00	1.00	174.00	38.00	2318.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	2126.00	9.00	241.00	12.00	1864.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1946.00	0.00	262.00	4.00	1680.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	1819.00	0.00	21.00	5.00	1793.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	1245.00	0.00	21.00	2.00	1222.00
..........................................................................................TTAACACAGCTGGTGGTATCC.................................................	21	1	1229.00	0.00	7.00	0.00	1222.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1119.00	0.00	12.00	0.00	1107.00
..........................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	855.00	0.00	8.00	0.00	847.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	697.00	0.00	75.00	3.00	619.00
..........................................................................................TGAACACAGATGGTGGTATCC.................................................	21	1	681.00	0.00	9.00	0.00	672.00
......................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	658.00	0.00	46.00	0.00	612.00
...............................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	623.00	1.00	76.00	2.00	544.00
..........................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	557.00	0.00	22.00	2.00	533.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	529.00	0.00	61.00	3.00	465.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	520.00	0.00	46.00	3.00	471.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	518.00	0.00	4.00	0.00	514.00
.........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	406.00	0.00	18.00	0.00	388.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	389.00	4.00	20.00	0.00	365.00
..........................................................................................TTAACACAGCTGGTGGTATC..................................................	20	1	385.00	0.00	0.00	0.00	385.00
..........................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	372.00	0.00	2.00	1.00	369.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	365.00	0.00	21.00	5.00	339.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	351.00	0.00	22.00	1.00	328.00
..........................................................................................TGAACACAGCTGGTGGTATCAA................................................	22	1	348.00	0.00	5.00	7.00	336.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	346.00	0.00	35.00	1.00	310.00
..........................................................................................TGAACACAGCTTGTGGTATCCA................................................	22	1	331.00	0.00	2.00	0.00	329.00
..........................................................................................TTAACACAGCTGGTGGTATCCA................................................	22	1	326.00	0.00	0.00	0.00	326.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	318.00	0.00	23.00	0.00	295.00
..........................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	313.00	0.00	17.00	0.00	296.00
..........................................................................................TGAACACAGCTGGTTGTATCCA................................................	22	1	308.00	0.00	2.00	0.00	306.00
..........................................................................................TGAACACATCTGGTGGTATC..................................................	20	1	304.00	0.00	0.00	0.00	304.00
..........................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	299.00	0.00	5.00	0.00	294.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	292.00	0.00	19.00	1.00	272.00
.........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	257.00	0.00	12.00	0.00	245.00
.........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	253.00	0.00	17.00	2.00	234.00
..........................................................................................TGAACACAGATGGTGGTATC..................................................	20	1	243.00	0.00	2.00	0.00	241.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	243.00	0.00	45.00	2.00	196.00
..........................................................................................TGAACACATCTGGTGGTATCCA................................................	22	1	242.00	1.00	0.00	0.00	241.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	234.00	0.00	16.00	0.00	218.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	228.00	0.00	15.00	1.00	212.00
..........................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	223.00	0.00	28.00	2.00	193.00
..........................................................................................TGAACACAGATGGTGGTATCCA................................................	22	1	207.00	0.00	1.00	0.00	206.00
..........................................................................................TGAACACAGCTGGTTGTAT...................................................	19	1	205.00	0.00	1.00	0.00	204.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	197.00	0.00	4.00	0.00	193.00
..........................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	190.00	0.00	6.00	0.00	184.00
..........................................................................................TTAACACAGCTGGTGGTAT...................................................	19	1	187.00	0.00	2.00	0.00	185.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	187.00	0.00	49.00	2.00	136.00
..........................................................................................TGCACACAGCTGGTGGTATCC.................................................	21	1	183.00	0.00	7.00	0.00	176.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	179.00	0.00	7.00	1.00	171.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	179.00	0.00	6.00	0.00	173.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	176.00	0.00	2.00	0.00	174.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	170.00	0.00	51.00	2.00	117.00
..........................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	167.00	0.00	12.00	0.00	155.00
..........................................................................................TGAACACATCTGGTGGTAT...................................................	19	1	154.00	0.00	1.00	0.00	153.00
..........................................................................................TGAACACAGCTTGTGGTAT...................................................	19	1	152.00	0.00	1.00	0.00	151.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	151.00	0.00	6.00	0.00	145.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	147.00	0.00	16.00	2.00	129.00
...............................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	145.00	0.00	76.00	0.00	69.00
..........................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	143.00	0.00	18.00	0.00	125.00
..........................................................................................TGAACACAGCTGGTGGTATACA................................................	22	1	141.00	0.00	3.00	0.00	138.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	139.00	1.00	37.00	1.00	100.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	137.00	0.00	14.00	0.00	123.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	137.00	0.00	49.00	0.00	88.00
..........................................................................................TGAxxACAGCTGGTGGTATCC.................................................	19	1	134.00	0.00	5.00	0.00	129.00
..........................................................................................TGAATACAGCTGGTGGTATCC.................................................	21	1	134.00	0.00	13.00	1.00	120.00
..........................................................................................TGAACACAGCTGGTAGTATCC.................................................	21	1	131.00	0.00	19.00	0.00	112.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	130.00	0.00	3.00	1.00	126.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	127.00	0.00	12.00	0.00	115.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	127.00	0.00	12.00	0.00	115.00
..........................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	123.00	0.00	9.00	0.00	114.00
..........................................................................................TGAACATAGCTGGTGGTATCC.................................................	21	1	119.00	0.00	12.00	0.00	107.00
..........................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	116.00	0.00	10.00	1.00	105.00
..........................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	114.00	0.00	4.00	0.00	110.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	114.00	0.00	36.00	1.00	77.00
..........................................................................................TGAACACAGCTGGTGATATCC.................................................	21	1	113.00	0.00	13.00	0.00	100.00
..........................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	112.00	0.00	5.00	0.00	107.00
..........................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	111.00	0.00	3.00	0.00	108.00
..........................................................................................TGAACACAGCTGGTGGTATTC.................................................	21	1	111.00	0.00	12.00	1.00	98.00
..........................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	111.00	0.00	2.00	0.00	109.00
..........................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	102.00	1.00	1.00	0.00	100.00
..........................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	1	101.00	0.00	25.00	1.00	75.00
..........................................................................................TGAACACAGATGGTGGTAT...................................................	19	1	99.00	0.00	0.00	0.00	99.00
..........................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	98.00	0.00	0.00	0.00	98.00
..........................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	97.00	0.00	10.00	1.00	86.00
..........................................................................................TGAACACCGCTGGTGGTATCC.................................................	21	1	95.00	0.00	11.00	0.00	84.00
...........................................................................................GAACACAGCTGGTGGTATCC.................................................	20	1	95.00	0.00	9.00	0.00	86.00
..........................................................................................TGAACACAGCTGGTGTTATCCA................................................	22	1	93.00	0.00	2.00	2.00	89.00
..........................................................................................TGAACAAAGCTGGTGGTATCCA................................................	22	1	93.00	1.00	3.00	0.00	89.00
..........................................................................................TGAACAAAGCTGGTGGTATC..................................................	20	1	93.00	0.00	2.00	0.00	91.00
..........................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	88.00	0.00	2.00	0.00	86.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	87.00	0.00	2.00	0.00	85.00
..........................................................................................TGAGCACAGCTGGTGGTATCCA................................................	22	1	86.00	0.00	5.00	0.00	81.00
..........................................................................................TGAACACAACTGGTGGTATCC.................................................	21	1	86.00	0.00	7.00	1.00	78.00
..........................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	84.00	0.00	11.00	0.00	73.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	84.00	0.00	4.00	0.00	80.00
..........................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	84.00	0.00	16.00	0.00	68.00

droAna3

AAGCT------CATTT---G-------------TGTGCATCGGCTGCTGGGATAC-ACCCTGTGCTCGCTTTGAATGAAATGCAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TTGCATCC-TTTC---------------AACTTCA-A	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	77559.00	4821.00	63644.00	9080.00	14.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	31530.00	1079.00	29093.00	1348.00	10.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	29367.00	2375.00	22750.00	4235.00	7.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	20840.00	1973.00	13767.00	5097.00	3.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	3127.00	296.00	2652.00	179.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	2124.00	320.00	1278.00	526.00	0.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	1969.00	159.00	1388.00	420.00	2.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1281.00	122.00	1003.00	156.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	1165.00	208.00	670.00	287.00	0.00
..........................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	1074.00	41.00	1021.00	12.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	1024.00	92.00	829.00	103.00	0.00
..........................................................................................TGAACACAGATGGTGGTATCC.................................................	21	1	783.00	40.00	725.00	18.00	0.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	697.00	7.00	575.00	115.00	0.00
...............................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	565.00	38.00	481.00	46.00	0.00
..........................................................................................TGAACACATCTGGTGGTATCCA................................................	22	1	526.00	8.00	517.00	1.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	431.00	14.00	411.00	6.00	0.00
..........................................................................................TGAACACATCTGGTGGTATC..................................................	20	1	375.00	23.00	346.00	6.00	0.00
..........................................................................................TGAACACAGATGGTGGTATCCA................................................	22	1	359.00	6.00	348.00	5.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	317.00	62.00	200.00	55.00	0.00
..........................................................................................TTAACACAGCTGGTGGTATCC.................................................	21	1	293.00	23.00	262.00	8.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	289.00	19.00	255.00	15.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	287.00	33.00	240.00	14.00	0.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	285.00	2.00	266.00	17.00	0.00
..........................................................................................TGAACACAGATGGTGGTATC..................................................	20	1	278.00	19.00	252.00	7.00	0.00
.........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	277.00	5.00	252.00	19.00	1.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	275.00	8.00	170.00	97.00	0.00
..........................................................................................TGAACACATCTGGTGGTAT...................................................	19	1	271.00	27.00	241.00	3.00	0.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	271.00	13.00	138.00	120.00	0.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	243.00	4.00	224.00	15.00	0.00
......................................................................TTGAATGAAATGCAAGCAAG......................................................................	20	1	225.00	66.00	113.00	46.00	0.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	218.00	22.00	191.00	5.00	0.00
..........................................................................................TGAACACAGATGGTGGTAT...................................................	19	1	206.00	18.00	173.00	15.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCAA................................................	22	1	205.00	12.00	191.00	2.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	188.00	16.00	136.00	36.00	0.00
...............................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	185.00	108.00	24.00	53.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	184.00	16.00	162.00	6.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	179.00	20.00	153.00	6.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	174.00	4.00	154.00	16.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	160.00	54.00	54.00	51.00	1.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	152.00	2.00	65.00	85.00	0.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	146.00	16.00	120.00	10.00	0.00
..........................................................................................TGAACACAGCTGGTGGTAG...................................................	19	1	144.00	5.00	115.00	24.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	142.00	17.00	23.00	102.00	0.00
..........................................................................................TTAACACAGCTGGTGGTATCCA................................................	22	1	130.00	5.00	125.00	0.00	0.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	130.00	1.00	110.00	19.00	0.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	128.00	1.00	89.00	38.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCTA................................................	22	1	127.00	11.00	110.00	5.00	1.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	123.00	3.00	63.00	57.00	0.00
..........................................................................................TGAACACAGCTTGTGGTATCCA................................................	22	1	121.00	7.00	113.00	1.00	0.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	118.00	7.00	23.00	88.00	0.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	118.00	5.00	99.00	14.00	0.00
..........................................................................................TGGACACAGCTGGTGGTATCCA................................................	22	1	115.00	0.00	112.00	3.00	0.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	113.00	19.00	73.00	21.00	0.00
..........................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	113.00	5.00	47.00	61.00	0.00
.........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	111.00	2.00	104.00	5.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	108.00	28.00	54.00	26.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	108.00	5.00	102.00	1.00	0.00
..........................................................................................TGGACACAGCTGGTGGTATC..................................................	20	1	107.00	1.00	99.00	7.00	0.00
..........................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	105.00	16.00	83.00	6.00	0.00
..........................................................................................TTAACACAGCTGGTGGTATC..................................................	20	1	105.00	4.00	100.00	1.00	0.00
..........................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	102.00	9.00	72.00	21.00	0.00
..........................................................................................TGAACACAGCTGGTGGCATCCA................................................	22	1	101.00	4.00	80.00	17.00	0.00
..........................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	100.00	3.00	30.00	67.00	0.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	99.00	4.00	94.00	1.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCGA................................................	22	1	98.00	9.00	85.00	4.00	0.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	98.00	13.00	66.00	19.00	0.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	95.00	5.00	67.00	23.00	0.00
..........................................................................................TGAACACAGCTGGTGGCAT...................................................	19	1	94.00	4.00	30.00	60.00	0.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	94.00	30.00	52.00	12.00	0.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	93.00	1.00	57.00	35.00	0.00
..........................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	92.00	6.00	76.00	10.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATTC.................................................	21	1	92.00	4.00	66.00	22.00	0.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	90.00	4.00	77.00	9.00	0.00
..........................................................................................TGAACACAGCTGGTAGTATCC.................................................	21	1	88.00	1.00	72.00	15.00	0.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	85.00	15.00	51.00	19.00	0.00
..........................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	83.00	5.00	62.00	16.00	0.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	82.00	4.00	65.00	13.00	0.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	80.00	16.00	35.00	29.00	0.00
..........................................................................................TGAACACAGCTTGTGGTAT...................................................	19	1	79.00	5.00	67.00	7.00	0.00
..........................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	77.00	2.00	59.00	16.00	0.00
..........................................................................................TGAACACAGCTGGTTGTATCCA................................................	22	1	77.00	1.00	76.00	0.00	0.00
..........................................................................................TGAACACAGCTGGTGGTT....................................................	18	1	76.00	0.00	63.00	13.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	76.00	4.00	71.00	1.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATG..................................................	20	1	75.00	4.00	59.00	12.00	0.00
..........................................................................................TGAGCACAGCTGGTGGTATCCA................................................	22	1	73.00	2.00	67.00	4.00	0.00
..........................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	72.00	23.00	40.00	9.00	0.00
..........................................................................................TGAACACAGCTGGTGGAATCCA................................................	22	1	70.00	0.00	64.00	6.00	0.00
..........................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	70.00	4.00	43.00	23.00	0.00
..........................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	70.00	1.00	60.00	9.00	0.00
..........................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	70.00	1.00	29.00	40.00	0.00
..........................................................................................TGAxxACAGCTGGTGGTATCC.................................................	19	1	68.00	2.00	66.00	0.00	0.00
..........................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	68.00	12.00	5.00	51.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	68.00	5.00	32.00	31.00	0.00
..........................................................................................TGAACACAGCTGGTTGTAT...................................................	19	1	68.00	9.00	56.00	3.00	0.00
..........................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	66.00	10.00	30.00	26.00	0.00
..........................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	64.00	14.00	37.00	13.00	0.00
..........................................................................................TGAACACAGCTGGTGGGAT...................................................	19	1	64.00	1.00	14.00	49.00	0.00
..........................................................................................TGAACACAGCTGGGGGTAT...................................................	19	1	63.00	1.00	4.00	58.00	0.00
.........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	60.00	3.00	42.00	15.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	59.00	7.00	7.00	45.00	0.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	57.00	9.00	43.00	5.00	0.00

dp4

AAGCT---------CTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-ATGc---------------aacatca-g	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	14304.00	1562.00	32.00	7071.00	5639.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	11133.00	2653.00	187.00	3906.00	4387.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	10456.00	1906.00	27.00	5566.00	2957.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	4610.00	1146.00	9.00	3231.00	224.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	2920.00	638.00	34.00	1536.00	712.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	671.00	97.00	22.00	552.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	453.00	112.00	0.00	254.00	87.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	375.00	159.00	0.00	193.00	23.00
..........................................................................................TGAACACAGCTGGTGGTATCCAA...............................................	23	1	356.00	86.00	4.00	160.00	106.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	345.00	85.00	4.00	235.00	21.00
..........................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	1	195.00	4.00	0.00	37.00	154.00
..........................................................................................TGAACACAGCTGGTGGTATCCAATT.............................................	25	1	173.00	67.00	3.00	76.00	27.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAA..............................................	24	1	134.00	48.00	6.00	57.00	23.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	129.00	32.00	0.00	31.00	66.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	123.00	3.00	0.00	73.00	47.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	101.00	1.00	0.00	21.00	79.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	75.00	3.00	1.00	67.00	4.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAC..............................................	24	1	69.00	6.00	2.00	8.00	53.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	63.00	2.00	1.00	7.00	53.00
...............................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	62.00	31.00	0.00	31.00	0.00
...............................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	62.00	34.00	0.00	28.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	61.00	0.00	0.00	52.00	9.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	60.00	1.00	0.00	25.00	34.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	57.00	4.00	0.00	45.00	8.00
..........................................................................................TGAACACAGCTGGGGGTATCCAAT..............................................	24	1	55.00	7.00	0.00	11.00	37.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	54.00	2.00	0.00	49.00	3.00
..........................................................................................TGAACACAGCTGGTGGGATCCAAT..............................................	24	1	52.00	1.00	0.00	8.00	43.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	49.00	0.00	0.00	12.00	37.00
..........................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	48.00	2.00	0.00	44.00	2.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	47.00	14.00	0.00	32.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	45.00	30.00	0.00	12.00	3.00
..........................................................................................TGAACACAGCTGGTxxTATCCAAT..............................................	22	1	44.00	3.00	0.00	0.00	41.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	43.00	11.00	0.00	24.00	8.00
..........................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	42.00	0.00	0.00	34.00	8.00
..........................................................................................TGAACACAGCTGGTGTTATCCAAT..............................................	24	1	42.00	3.00	0.00	2.00	37.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	40.00	3.00	0.00	4.00	33.00
..........................................................................................TGAACACAGCTGGTGGTATCCAATA.............................................	25	1	39.00	10.00	0.00	24.00	5.00
..........................................................................................TGAACACAGCTGGCGGTATCCAAT..............................................	24	1	36.00	7.00	2.00	22.00	5.00
..........................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	35.00	4.00	0.00	31.00	0.00
..........................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	35.00	0.00	0.00	20.00	15.00
......................................................................TTGAATATGGTGCAAGCAAG......................................................................	20	1	32.00	7.00	3.00	21.00	1.00
..........................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	29.00	2.00	0.00	5.00	22.00
..........................................................................................TGAACACAGCTGGTGGCATCCAAT..............................................	24	1	28.00	6.00	0.00	16.00	6.00
..........................................................................................TGAACACAGCTGGTGGTATCCCAT..............................................	24	1	27.00	1.00	9.00	17.00	0.00
..........................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	27.00	1.00	0.00	8.00	18.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	25.00	1.00	0.00	14.00	10.00
..........................................................................................TGAACACAGCTGGTGGCAT...................................................	19	1	24.00	1.00	0.00	23.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATCCAAT..............................................	24	1	24.00	0.00	3.00	14.00	7.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	23.00	0.00	0.00	5.00	18.00
..........................................................................................TGAACACAGCTGGTGGAATC..................................................	20	1	23.00	0.00	0.00	22.00	1.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	23.00	1.00	0.00	21.00	1.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	21.00	1.00	0.00	13.00	7.00
..........................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	21.00	4.00	0.00	1.00	16.00
..........................................................................................TGAACACAGCTGGTTGTATCCAAT..............................................	24	1	21.00	0.00	1.00	0.00	20.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	20.00	1.00	0.00	1.00	18.00
..........................................................................................TGAACACAGCTGGTGGGAT...................................................	19	1	20.00	1.00	0.00	19.00	0.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	20.00	2.00	0.00	8.00	10.00
..........................................................................................TGAACACAGCTGGTGCTATCCAAT..............................................	24	1	19.00	2.00	0.00	1.00	16.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	19.00	1.00	0.00	13.00	5.00
..........................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	19.00	4.00	0.00	9.00	6.00
.........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	18.00	6.00	0.00	11.00	1.00
..........................................................................................TGAACACAGCTGGTGGTGTC..................................................	20	1	18.00	1.00	0.00	16.00	1.00
..........................................................................................TGCACACAGCTGGTGGTATCC.................................................	21	1	18.00	1.00	0.00	17.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	18.00	3.00	0.00	14.00	1.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	18.00	2.00	0.00	12.00	4.00
..........................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	17.00	0.00	0.00	2.00	15.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	17.00	0.00	0.00	15.00	2.00
..........................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	17.00	6.00	0.00	11.00	0.00
..........................................................................................TGAACACAGCTGxxGGTATCCAAT..............................................	22	1	17.00	1.00	0.00	0.00	16.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	17.00	3.00	0.00	3.00	11.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	16.00	4.00	0.00	9.00	3.00
..........................................................................................TGCACACAGCTGGTGGTATC..................................................	20	1	15.00	0.00	0.00	15.00	0.00
..........................................................................................TGAACACAGCTGATGGTATC..................................................	20	1	15.00	0.00	0.00	5.00	10.00
..........................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	15.00	2.00	0.00	12.00	1.00
..........................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	1	15.00	5.00	0.00	10.00	0.00
..........................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	14.00	4.00	0.00	9.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATAA.................................................	21	1	14.00	8.00	0.00	6.00	0.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	14.00	2.00	0.00	4.00	8.00
..........................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	14.00	0.00	1.00	13.00	0.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	14.00	2.00	0.00	3.00	9.00
..........................................................................................TGAACACAGCTGGTGGTCTC..................................................	20	1	14.00	0.00	0.00	14.00	0.00
..........................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	14.00	0.00	0.00	7.00	7.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	14.00	2.00	0.00	3.00	9.00
..........................................................................................TGAACACAGCTGGTGCTATC..................................................	20	1	14.00	1.00	0.00	10.00	3.00
..........................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	14.00	0.00	1.00	13.00	0.00
..........................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	14.00	0.00	0.00	14.00	0.00
..........................................................................................TGAACACAGCTGGGGGTAT...................................................	19	1	13.00	0.00	0.00	12.00	1.00
..........................................................................................TGAACACAGCTGATGGTATCCAAT..............................................	24	1	13.00	0.00	0.00	4.00	9.00
..........................................................................................TGAACACAGCTGCTGGTATCCAAT..............................................	24	1	13.00	3.00	0.00	3.00	7.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAAA.............................................	25	1	13.00	7.00	0.00	6.00	0.00
..........................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	13.00	2.00	0.00	1.00	10.00
..........................................................................................TGAACACAGCTGGCGGCATCC.................................................	21	1	13.00	0.00	0.00	13.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCGAT..............................................	24	1	13.00	0.00	0.00	13.00	0.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	13.00	2.00	0.00	3.00	8.00
..........................................................................................TGAACACAGCTAGTGGTATCCAAT..............................................	24	1	12.00	3.00	0.00	8.00	1.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	12.00	1.00	0.00	8.00	3.00
.........................................................................................CTGAACACAGCTGGTGGTATCCAAT..............................................	25	1	12.00	7.00	1.00	3.00	1.00
..........................................................................................TGAACACATCTGGTGGTATC..................................................	20	1	12.00	1.00	0.00	6.00	5.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	12.00	1.00	0.00	6.00	5.00
..........................................................................................TGAAAACAGCTGGTGGTATCCAAT..............................................	24	1	11.00	0.00	3.00	8.00	0.00
..........................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	11.00	1.00	0.00	5.00	5.00

droPer1

AAGCT---------CTTCCGTGTCTCGTGTCTCTGTGCAACTGCCGTTGGGATAC-ACCCTGTGCTCGCTTTGAATATGGTGCAAGCAAGTGAACACAGCTGGTGGTATCCAATGGCCGTT--CTGCAACA-ATGc---------------aacatca-g	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	17209.00	2733.00	16.00	5430.00	8172.00	858.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	14314.00	3132.00	16.00	3739.00	7163.00	264.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	12154.00	1833.00	99.00	3856.00	5739.00	627.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	9893.00	2769.00	2.00	1648.00	5473.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	3623.00	515.00	21.00	1419.00	1563.00	105.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	911.00	26.00	13.00	365.00	507.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAA...............................................	23	1	637.00	99.00	2.00	217.00	305.00	14.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	601.00	157.00	0.00	117.00	316.00	11.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	547.00	1.00	0.00	3.00	15.00	528.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	471.00	48.00	0.00	124.00	299.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	352.00	153.00	0.00	52.00	147.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAATT.............................................	25	1	226.00	37.00	0.00	58.00	128.00	3.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAA..............................................	24	1	204.00	29.00	6.00	72.00	94.00	3.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	191.00	8.00	0.00	35.00	148.00	0.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	132.00	2.00	0.00	28.00	101.00	1.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	121.00	3.00	0.00	22.00	96.00	0.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	117.00	6.00	0.00	35.00	76.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	1	113.00	0.00	0.00	29.00	72.00	12.00
...............................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	105.00	16.00	0.00	23.00	66.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	104.00	1.00	0.00	25.00	78.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	103.00	37.00	0.00	29.00	34.00	3.00
..........................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	103.00	2.00	0.00	24.00	77.00	0.00
..........................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	102.00	3.00	0.00	8.00	91.00	0.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	101.00	6.00	0.00	10.00	75.00	10.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	96.00	0.00	0.00	0.00	2.00	94.00
..........................................................................................TGAACACAGCTGGCGGTATCCAAT..............................................	24	1	90.00	3.00	2.00	22.00	62.00	1.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	84.00	6.00	0.00	7.00	67.00	4.00
...............................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	84.00	5.00	0.00	21.00	58.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	82.00	1.00	0.00	20.00	61.00	0.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	78.00	8.00	0.00	21.00	47.00	2.00
..........................................................................................TGAACACAGCTGGGGGTATCCAAT..............................................	24	1	77.00	7.00	0.00	3.00	63.00	4.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	77.00	6.00	0.00	5.00	57.00	9.00
..........................................................................................TGAACACAGCTGGTGGCATCCAAT..............................................	24	1	74.00	4.00	1.00	17.00	50.00	2.00
..........................................................................................TGAACACAGCTGGTGGAATC..................................................	20	1	73.00	10.00	0.00	22.00	41.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAATA.............................................	25	1	71.00	5.00	0.00	33.00	33.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCCAT..............................................	24	1	70.00	0.00	7.00	20.00	43.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATCCAAT..............................................	24	1	70.00	4.00	0.00	7.00	59.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	69.00	1.00	0.00	8.00	60.00	0.00
..........................................................................................TGAACACAGCTGGTGGCAT...................................................	19	1	68.00	3.00	0.00	8.00	57.00	0.00
..........................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	62.00	2.00	0.00	11.00	49.00	0.00
..........................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	59.00	0.00	0.00	13.00	46.00	0.00
..........................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	58.00	3.00	0.00	8.00	46.00	1.00
..........................................................................................TGAACACAGCTGGGGGTAT...................................................	19	1	55.00	4.00	0.00	1.00	50.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAC..............................................	24	1	53.00	9.00	1.00	12.00	17.00	14.00
..........................................................................................TGAACACAGCTGGTGGTGTC..................................................	20	1	52.00	6.00	0.00	7.00	39.00	0.00
..........................................................................................TGAAAACAGCTGGTGGTATCCAAT..............................................	24	1	52.00	0.00	1.00	9.00	42.00	0.00
..........................................................................................TGAAAACAGCTGGTGGTATC..................................................	20	1	49.00	0.00	0.00	10.00	39.00	0.00
..........................................................................................TGAACACAGCTGGTGGGAT...................................................	19	1	49.00	3.00	0.00	0.00	46.00	0.00
......................................................................TTGAATATGGTGCAAGCAAG......................................................................	20	1	48.00	16.00	2.00	12.00	18.00	0.00
..........................................................................................TGAACACAGCTGGTGGTGT...................................................	19	1	46.00	1.00	0.00	2.00	43.00	0.00
..........................................................................................TGAACACAGCTGGTGGAAT...................................................	19	1	46.00	8.00	0.00	11.00	27.00	0.00
..........................................................................................TGAACACAGCTGGTGGAATCCAAT..............................................	24	1	45.00	10.00	0.00	5.00	30.00	0.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	44.00	3.00	0.00	6.00	35.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	44.00	0.00	0.00	0.00	0.00	44.00
..........................................................................................TGAACACAGCTGGTGGGATCCAAT..............................................	24	1	43.00	3.00	0.00	3.00	31.00	6.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	42.00	3.00	0.00	16.00	23.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	40.00	17.00	0.00	11.00	12.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCTAT..............................................	24	1	40.00	0.00	0.00	6.00	34.00	0.00
..........................................................................................CGAACACAGCTGGTGGTATC..................................................	20	1	39.00	5.00	0.00	6.00	22.00	6.00
..........................................................................................TGAACACAGCGGGTGGTATCC.................................................	21	1	38.00	0.00	0.00	3.00	34.00	1.00
..........................................................................................TGAACACAGCGGGTGGTATC..................................................	20	1	37.00	0.00	0.00	10.00	27.00	0.00
..........................................................................................TGAACACAGCTGGTGGTCTC..................................................	20	1	36.00	0.00	0.00	6.00	30.00	0.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	34.00	3.00	0.00	21.00	10.00	0.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	34.00	5.00	0.00	7.00	12.00	10.00
..........................................................................................TGAACACAGCTGGCGGCATC..................................................	20	1	33.00	0.00	0.00	8.00	25.00	0.00
..........................................................................................TGAAAACAGCTGGTGGTAT...................................................	19	1	33.00	0.00	0.00	7.00	26.00	0.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	33.00	4.00	0.00	10.00	19.00	0.00
..........................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	1	33.00	1.00	0.00	7.00	24.00	1.00
..........................................................................................TGAACGCAGCTGGTGGTATC..................................................	20	1	32.00	4.00	0.00	11.00	16.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	32.00	6.00	0.00	11.00	15.00	0.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	31.00	3.00	0.00	7.00	14.00	7.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	31.00	1.00	0.00	2.00	22.00	6.00
..........................................................................................AGAACACAGCTGGTGGTATCC.................................................	21	1	30.00	2.00	0.00	4.00	16.00	8.00
..........................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	30.00	5.00	0.00	5.00	18.00	2.00
..........................................................................................TGAACACAGCGGGTGGTAT...................................................	19	1	30.00	1.00	0.00	0.00	29.00	0.00
..........................................................................................TGAGCACAGCTGGTGGTATCCAAT..............................................	24	1	30.00	6.00	0.00	7.00	15.00	2.00
..........................................................................................TGAACACAGCTGGTGGTATCCGAT..............................................	24	1	30.00	3.00	0.00	7.00	19.00	1.00
..........................................................................................TGAACACAGCTGGCGGCATCC.................................................	21	1	29.00	0.00	0.00	7.00	22.00	0.00
..........................................................................................AGAACACAGCTGGTGGTATC..................................................	20	1	28.00	4.00	0.00	3.00	19.00	2.00
..........................................................................................TGAACACAGCTGGTGTTATCCAAT..............................................	24	1	28.00	6.00	0.00	3.00	7.00	12.00
..........................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	27.00	1.00	0.00	1.00	23.00	2.00
..........................................................................................TGAACACAGCTGGTGGTCT...................................................	19	1	27.00	0.00	0.00	3.00	24.00	0.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	26.00	0.00	0.00	6.00	14.00	6.00
..........................................................................................TGAACACAGCTGGTGGTATCTAAT..............................................	24	1	26.00	1.00	0.00	10.00	15.00	0.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	26.00	1.00	0.00	4.00	21.00	0.00
..........................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	26.00	4.00	0.00	2.00	18.00	2.00
..........................................................................................TGAACGCAGCTGGTGGTATCCAAT..............................................	24	1	25.00	1.00	0.00	20.00	4.00	0.00
..........................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	25.00	5.00	0.00	2.00	18.00	0.00
..........................................................................................TGAACACAGCTGGTGCTATC..................................................	20	1	25.00	3.00	0.00	3.00	19.00	0.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	25.00	1.00	0.00	5.00	13.00	6.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	25.00	0.00	0.00	4.00	20.00	1.00
..........................................................................................TGAACACAGCTGTTGGTAT...................................................	19	1	24.00	5.00	0.00	3.00	16.00	0.00
..........................................................................................TGAACACAGCTGGTGGTAGC..................................................	20	1	24.00	0.00	0.00	3.00	21.00	0.00
..........................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	1	24.00	0.00	0.00	6.00	18.00	0.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	24.00	2.00	0.00	4.00	18.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	23.00	0.00	0.00	12.00	10.00	1.00
..........................................................................................TGAACATAGCTGGTGGTATCC.................................................	21	1	23.00	2.00	0.00	4.00	16.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	23.00	0.00	0.00	0.00	0.00	23.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAAA.............................................	25	1	23.00	4.00	0.00	2.00	17.00	0.00
..........................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	23.00	4.00	0.00	6.00	13.00	0.00
..........................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	22.00	3.00	0.00	4.00	15.00	0.00

droWil1

AAGCTTTCTAGATTCTTC---------------TGTGCAACTGCCACTGGGATAC-ACCCTGTGCTCGCTTTGAATATTGTGCAAACAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTTTTTTGCATCC-ATGC---------------AACACCA-A	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	1301776.00	73.00	33.00	1899.00	1299771.00
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	604607.00	1115.00	299.00	45641.00	557552.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	286427.00	781.00	169.00	29609.00	255868.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	163104.00	39.00	3.00	1067.00	161995.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	96502.00	0.00	0.00	3.00	96499.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	84183.00	482.00	168.00	20212.00	63321.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	78432.00	0.00	0.00	2.00	78430.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	44894.00	1.00	3.00	173.00	44717.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	19617.00	2.00	1.00	98.00	19516.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	19295.00	519.00	100.00	13285.00	5391.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	12819.00	1.00	0.00	28.00	12790.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	10285.00	0.00	1.00	10.00	10274.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	7951.00	0.00	0.00	3.00	7948.00
..........................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	6318.00	1.00	0.00	2.00	6315.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	5857.00	0.00	1.00	49.00	5807.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	5777.00	0.00	0.00	47.00	5730.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	5697.00	33.00	5.00	814.00	4845.00
..........................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	4276.00	0.00	0.00	3.00	4273.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	4048.00	6.00	1.00	197.00	3844.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	3962.00	4.00	1.00	368.00	3589.00
..........................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	3466.00	0.00	0.00	0.00	3466.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	3343.00	0.00	0.00	45.00	3298.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	3181.00	1.00	1.00	65.00	3114.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	3035.00	0.00	1.00	51.00	2983.00
..........................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	2948.00	0.00	0.00	21.00	2927.00
..........................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	2899.00	0.00	0.00	3.00	2896.00
..........................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	2890.00	0.00	0.00	43.00	2847.00
..........................................................................................TGAACACAGCTGATGGTATCCAGT..............................................	24	1	2878.00	0.00	0.00	2.00	2876.00
..........................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	2804.00	1.00	0.00	23.00	2780.00
..........................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	2722.00	0.00	0.00	7.00	2715.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	2686.00	30.00	4.00	688.00	1964.00
..........................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	2604.00	1.00	0.00	37.00	2566.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	2442.00	2.00	0.00	118.00	2322.00
..........................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	2440.00	0.00	0.00	5.00	2435.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	2260.00	0.00	0.00	56.00	2204.00
..........................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	2163.00	0.00	0.00	0.00	2163.00
..........................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	1982.00	2.00	0.00	53.00	1927.00
..........................................................................................TGAACACAGCTGCTGGTATCCAGT..............................................	24	1	1958.00	0.00	0.00	5.00	1953.00
..........................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	1833.00	0.00	0.00	0.00	1833.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	1803.00	0.00	1.00	48.00	1754.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	1767.00	88.00	114.00	1539.00	26.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	1745.00	5.00	10.00	741.00	989.00
..........................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	1727.00	0.00	0.00	3.00	1724.00
..........................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	1678.00	0.00	0.00	13.00	1665.00
..........................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	1	1608.00	5.00	3.00	463.00	1137.00
..........................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	1576.00	0.00	0.00	33.00	1543.00
..........................................................................................TGAACACAGCTGGTCGTATCCAGT..............................................	24	1	1569.00	0.00	0.00	1.00	1568.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	1529.00	0.00	0.00	43.00	1486.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	1461.00	4.00	0.00	73.00	1384.00
..........................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	1393.00	0.00	0.00	4.00	1389.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	1387.00	1.00	0.00	0.00	1386.00
..........................................................................................TGAACACAGCTGATGGTATCC.................................................	21	1	1371.00	0.00	0.00	57.00	1314.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	1346.00	0.00	0.00	41.00	1305.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	1299.00	1.00	0.00	65.00	1233.00
..........................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	1266.00	0.00	0.00	1.00	1265.00
..........................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	1259.00	2.00	0.00	5.00	1252.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	1256.00	5.00	3.00	175.00	1073.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	1233.00	5.00	1.00	326.00	901.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1224.00	11.00	2.00	626.00	585.00
..........................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	1209.00	0.00	0.00	11.00	1198.00
..........................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	1174.00	0.00	0.00	9.00	1165.00
..........................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	1150.00	3.00	0.00	49.00	1098.00
..........................................................................................TGAACACACCTGGTGGTATCCAGT..............................................	24	1	1070.00	0.00	0.00	10.00	1060.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	1065.00	0.00	0.00	82.00	983.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	1026.00	1.00	0.00	102.00	923.00
..........................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	1017.00	0.00	0.00	1.00	1016.00
..........................................................................................TGAACACAGCTTGTGGTATCCAGT..............................................	24	1	998.00	0.00	2.00	14.00	982.00
..........................................................................................TGAACACAGCTGGTGGAATCCAGT..............................................	24	1	988.00	0.00	0.00	10.00	978.00
..........................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	962.00	0.00	0.00	43.00	919.00
..........................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	940.00	0.00	0.00	2.00	938.00
..........................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	887.00	0.00	0.00	2.00	885.00
..........................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	884.00	0.00	1.00	41.00	842.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGG..............................................	24	1	810.00	0.00	0.00	0.00	810.00
..........................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	801.00	0.00	0.00	35.00	766.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGG..............................................	24	1	801.00	0.00	0.00	0.00	801.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	798.00	1.00	0.00	87.00	710.00
..........................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	796.00	0.00	0.00	38.00	758.00
..........................................................................................TGAACACAGCTxGTGGTATCCAGT..............................................	23	1	781.00	2.00	0.00	31.00	748.00
..........................................................................................TGAACACAGCTGGxGGTATCCAGT..............................................	23	1	776.00	0.00	0.00	0.00	776.00
..........................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	770.00	3.00	1.00	26.00	740.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	769.00	2.00	0.00	120.00	647.00
..........................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	763.00	1.00	0.00	21.00	741.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	751.00	1.00	0.00	68.00	682.00
..........................................................................................TGAACGCAGCTGGTGGTATCCAGT..............................................	24	1	733.00	0.00	0.00	2.00	731.00
..........................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	718.00	1.00	0.00	31.00	686.00
..........................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	711.00	1.00	0.00	38.00	672.00
..........................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	707.00	4.00	0.00	78.00	625.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGC..............................................	24	1	701.00	0.00	0.00	0.00	701.00
..........................................................................................TGAACACAGCTxxTGGTATC..................................................	18	1	695.00	0.00	0.00	16.00	679.00
..........................................................................................TGAACACAGCTGATGGTATC..................................................	20	1	690.00	1.00	0.00	53.00	636.00
..........................................................................................TGAACACAGCTGGTGGTATCCAAT..............................................	24	1	673.00	0.00	0.00	6.00	667.00
..........................................................................................TGAACACAGCTGGTGGTGTCCAGT..............................................	24	1	641.00	0.00	0.00	1.00	640.00
..........................................................................................TGAACACAGCTGGTGGTATCCGGT..............................................	24	1	636.00	0.00	0.00	1.00	635.00
..........................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	623.00	0.00	0.00	6.00	617.00
..........................................................................................CGAACACAGCTGGTGGTATCCAGT..............................................	24	1	605.00	0.00	0.00	6.00	599.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	605.00	0.00	0.00	3.00	602.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGC..............................................	24	1	605.00	0.00	0.00	0.00	605.00
..........................................................................................TGAACACAGCTGGTGGTACCCAGT..............................................	24	1	582.00	0.00	0.00	1.00	581.00
..........................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	572.00	0.00	0.00	6.00	566.00
..........................................................................................TGAACACAGCTGGTxxTATCCAG...............................................	21	1	546.00	1.00	0.00	0.00	545.00
..........................................................................................TGAACACAGCTGGxGGTATC..................................................	19	1	532.00	0.00	0.00	15.00	517.00

droVir3

AAGCT---------TTTTC--------------AGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAATT--GTGCAAGCAAGTGAACACAGCTGGTggtatccagtggccgtt---ggcagccaatgcaacaattgcaacaactgcaaca-a	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	307423.00	6008.00	19656.00	240.00	150634.00	130885.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	215665.00	119.00	133.00	12.00	103933.00	111468.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	82420.00	2831.00	13073.00	112.00	28969.00	37435.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	69142.00	61.00	31.00	3.00	39175.00	29872.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	37772.00	1580.00	3053.00	143.00	20024.00	12972.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGG..............................................	24	1	25384.00	0.00	0.00	0.00	12598.00	12786.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	20772.00	1583.00	14413.00	74.00	2012.00	2690.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGC..............................................	24	1	16257.00	1.00	2.00	1.00	6522.00	9731.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTT.............................................	25	1	9776.00	4.00	10.00	0.00	3438.00	6324.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTA.............................................	25	1	4303.00	0.00	9.00	0.00	2080.00	2214.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	3818.00	103.00	171.00	7.00	2052.00	1485.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	3771.00	1.00	1.00	0.00	2242.00	1527.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	3475.00	20.00	42.00	1.00	2050.00	1362.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	2750.00	8.00	91.00	1.00	1346.00	1304.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	2563.00	189.00	677.00	4.00	998.00	695.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGT..............................................	24	1	2383.00	0.00	0.00	0.00	1285.00	1098.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	1877.00	4.00	32.00	1.00	1076.00	764.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTC.............................................	25	1	1664.00	1.00	2.00	0.00	990.00	671.00
..........................................................................................TGAACACAGCTGGTGGTATCCG................................................	22	1	1532.00	2.00	12.00	1.00	923.00	594.00
..........................................................................................TGAACACAGCTxGTGGTATCC.................................................	20	1	1211.00	6.00	4.00	0.00	619.00	582.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1194.00	105.00	530.00	38.00	250.00	271.00
..........................................................................................TGAACACAGCTGCTGGTATCC.................................................	21	1	1151.00	7.00	40.00	0.00	571.00	533.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	1123.00	2.00	7.00	0.00	514.00	600.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1034.00	1.00	20.00	0.00	567.00	446.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	944.00	5.00	305.00	2.00	378.00	254.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	939.00	18.00	243.00	3.00	398.00	277.00
..........................................................................................TGAACACAGCTGGTGGGATCCAGT..............................................	24	1	927.00	1.00	0.00	0.00	505.00	421.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	920.00	10.00	30.00	1.00	413.00	466.00
..........................................................................................TGAACACAGCTGGGGGTATCCAG...............................................	23	1	772.00	1.00	0.00	0.00	456.00	315.00
..........................................................................................TGAACACAGCTGGTGGTATCCGG...............................................	23	1	744.00	0.00	0.00	0.00	451.00	293.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	697.00	7.00	39.00	2.00	390.00	259.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	673.00	7.00	90.00	5.00	209.00	362.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	578.00	8.00	38.00	1.00	359.00	172.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	552.00	6.00	18.00	1.00	319.00	208.00
..........................................................................................TGAACACAGCTGGTGTTATCCAGT..............................................	24	1	550.00	0.00	0.00	0.00	294.00	256.00
..........................................................................................TGAACACAGCTGGCGGTATCCAGT..............................................	24	1	518.00	0.00	0.00	0.00	276.00	242.00
..........................................................................................TGAACACAGCTGTTGGTATC..................................................	20	1	514.00	3.00	19.00	0.00	208.00	284.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	495.00	86.00	289.00	3.00	52.00	65.00
..........................................................................................TGAACACAGCTGCTGGTATC..................................................	20	1	471.00	6.00	35.00	0.00	195.00	235.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	457.00	1.00	24.00	0.00	201.00	231.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	453.00	11.00	136.00	2.00	170.00	134.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	453.00	144.00	299.00	2.00	2.00	6.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	451.00	6.00	35.00	0.00	206.00	204.00
..........................................................................................TGAACACAGCTGGTTGTATCCAGT..............................................	24	1	429.00	0.00	0.00	0.00	222.00	207.00
..........................................................................................TGAACACAGCTxxTGGTATCC.................................................	19	1	428.00	0.00	0.00	0.00	246.00	182.00
..........................................................................................TGAACACAGCTGGAGGTATCCAGT..............................................	24	1	409.00	0.00	2.00	0.00	228.00	179.00
..........................................................................................TGAACACAGCTGGTGGGATCCAG...............................................	23	1	388.00	0.00	0.00	0.00	248.00	140.00
..........................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	387.00	3.00	209.00	1.00	89.00	85.00
..........................................................................................TGAACACAGCTGGGGGTATCCA................................................	22	1	386.00	5.00	7.00	0.00	216.00	158.00
..........................................................................................TGAACACAGCTGGTxxTATCCAGT..............................................	22	1	386.00	0.00	0.00	0.00	214.00	172.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	385.00	10.00	189.00	2.00	79.00	105.00
..........................................................................................TGAACACAGCTxGTGGTATC..................................................	19	1	371.00	9.00	3.00	0.00	156.00	203.00
..........................................................................................TGAACACAGCTGGTTGTATC..................................................	20	1	352.00	7.00	21.00	0.00	173.00	151.00
..........................................................................................TGAACACATCTGGTGGTATCCAGT..............................................	24	1	324.00	1.00	0.00	0.00	167.00	156.00
..........................................................................................TGAACACAGCTGGTxGTATCC.................................................	20	1	308.00	1.00	2.00	0.00	197.00	108.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	304.00	8.00	82.00	0.00	101.00	113.00
..........................................................................................TGAGCACAGCTGGTGGTATCCAGT..............................................	24	1	297.00	0.00	5.00	0.00	147.00	145.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGG..............................................	24	1	293.00	0.00	0.00	0.00	173.00	120.00
..........................................................................................TGAACACAGCTGxxGGTATCC.................................................	19	1	285.00	0.00	0.00	0.00	174.00	111.00
..........................................................................................TGAACACAGCTGGTGGGATCCA................................................	22	1	277.00	5.00	11.00	0.00	162.00	99.00
..........................................................................................TGAACACAGCTTGTGGTATC..................................................	20	1	267.00	8.00	20.00	1.00	109.00	129.00
..........................................................................................TGAACACAGCTGTTGGTATCCAGT..............................................	24	1	264.00	0.00	0.00	0.00	182.00	82.00
..........................................................................................TGAACACATCTGGTGGTATCC.................................................	21	1	262.00	2.00	7.00	0.00	152.00	101.00
..........................................................................................TGAACACAGCxxGTGGTATCC.................................................	19	1	260.00	0.00	0.00	0.00	134.00	126.00
..........................................................................................TGAACACAGCTGTTGGTATCCA................................................	22	1	258.00	1.00	3.00	0.00	165.00	89.00
..........................................................................................TGAACACAGCTGGTGTTATCCAG...............................................	23	1	255.00	0.00	0.00	0.00	160.00	95.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTTT............................................	26	1	254.00	0.00	0.00	0.00	75.00	179.00
..........................................................................................TGAACACAGCTGGTCGTATCC.................................................	21	1	246.00	7.00	11.00	1.00	138.00	89.00
..........................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	244.00	8.00	53.00	0.00	85.00	98.00
..........................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	244.00	6.00	231.00	0.00	3.00	4.00
..........................................................................................TGAACACAGCTGTTGGTATCCAG...............................................	23	1	236.00	0.00	0.00	0.00	170.00	66.00
..........................................................................................TGAACACAGCTGxxGGTATCCAGT..............................................	22	1	233.00	0.00	0.00	0.00	114.00	119.00
..........................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	230.00	4.00	219.00	0.00	3.00	4.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	224.00	5.00	16.00	1.00	113.00	89.00
..........................................................................................TGAACACAGCTGGTGGCATCCAGT..............................................	24	1	220.00	0.00	0.00	0.00	103.00	117.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	213.00	3.00	57.00	1.00	87.00	65.00
..........................................................................................TGAACACAGCTGGTxGTATCCAGT..............................................	23	1	205.00	0.00	0.00	0.00	101.00	104.00
..........................................................................................TGAACACAGCTGGTGGTATAC.................................................	21	1	201.00	5.00	19.00	2.00	80.00	95.00
..........................................................................................TGAACACAGCTGGTGGTAC...................................................	19	1	199.00	0.00	13.00	0.00	77.00	109.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	195.00	7.00	16.00	0.00	83.00	89.00
..........................................................................................TGAACACAGCTGGTGTTATC..................................................	20	1	192.00	1.00	18.00	0.00	83.00	90.00
..........................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	189.00	13.00	90.00	2.00	44.00	40.00
..........................................................................................TGAACACAGCTGGGGGTATCCAGC..............................................	24	1	187.00	0.00	0.00	0.00	78.00	109.00
..........................................................................................TGAACACAGCTGGCGGTATCCAG...............................................	23	1	186.00	0.00	0.00	0.00	105.00	81.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	179.00	6.00	32.00	0.00	78.00	63.00
..........................................................................................TGAACACAGCTGGTxGTATC..................................................	19	1	177.00	4.00	4.00	0.00	74.00	95.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	174.00	4.00	14.00	2.00	75.00	79.00
..........................................................................................TGAACACAGCCGGTGGTATCCAGT..............................................	24	1	174.00	0.00	0.00	0.00	93.00	81.00
..........................................................................................TGAACACACCTGGTGGTATCC.................................................	21	1	171.00	2.00	18.00	0.00	84.00	67.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	171.00	17.00	110.00	5.00	22.00	17.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	171.00	1.00	38.00	0.00	73.00	59.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	170.00	2.00	24.00	0.00	70.00	74.00
..........................................................................................TGAACACAGCTGGTGCTATCCAGT..............................................	24	1	170.00	0.00	0.00	0.00	87.00	83.00
..........................................................................................TGAACGCAGCTGGTGGTATCCAGT..............................................	24	1	162.00	0.00	0.00	0.00	84.00	78.00
..........................................................................................TGAACAAAGCTGGTGGTATCC.................................................	21	1	162.00	5.00	109.00	0.00	29.00	19.00
..........................................................................................TGAACACAGCTGGTCGTATC..................................................	20	1	158.00	5.00	6.00	0.00	78.00	69.00
..........................................................................................TGAACACAGCTGGTxxTATCCAG...............................................	21	1	158.00	0.00	0.00	0.00	106.00	52.00
..........................................................................................TGAACACAGCTGGTTGTATCCAG...............................................	23	1	156.00	0.00	0.00	0.00	105.00	51.00
..........................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	155.00	11.00	84.00	0.00	21.00	39.00
..........................................................................................TGAACACAGCTCGTGGTATC..................................................	20	1	155.00	1.00	13.00	0.00	53.00	88.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGTG.............................................	25	1	152.00	1.00	2.00	0.00	49.00	100.00

droMoj3

AAGCT--------TTCTCTC-------------TGTGCAATTGCCGCTGGGATAC-ACCCTGTGCTCGCTTTGAGTT-TATGT-TGCAAGTGAACACAGCTGGTGGTATCCAGAGGCCGTT---GACAGCCAATGc---------------aacaaca-g	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	33837.00	6347.00	15275.00	11812.00	403.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	25876.00	4026.00	12128.00	9467.00	255.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	22279.00	4798.00	9731.00	7506.00	244.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	6469.00	1819.00	2453.00	1906.00	291.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1674.00	300.00	732.00	630.00	12.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	1095.00	241.00	551.00	298.00	5.00
.........................................................................................GTGAACACAGCTGGTGGTAT...................................................	20	1	1006.00	326.00	391.00	287.00	2.00
...............................................TGGGATAC-ACCCTGTGCTCGCT..........................................................................................	22	1	845.00	115.00	354.00	368.00	8.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGA..............................................	24	1	820.00	205.00	342.00	262.00	11.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	793.00	113.00	337.00	239.00	104.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	678.00	133.00	293.00	247.00	5.00
..........................................................................................TGAACACAGCTGGTGGTA....................................................	18	1	457.00	35.00	230.00	182.00	10.00
..........................................................................................TGAACACAGCTGGCGGTATCC.................................................	21	1	213.00	6.00	124.00	79.00	4.00
..........................................................................................TGAACACAGCTGGTGGTATCG.................................................	21	1	206.00	16.00	117.00	71.00	2.00
..........................................................................................TGAACACAGCTGGCGGTAT...................................................	19	1	191.00	5.00	113.00	73.00	0.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	170.00	5.00	94.00	71.00	0.00
.........................................................................................GTGAACACAGCTGGTGGTATC..................................................	21	1	168.00	58.00	62.00	48.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATCC.................................................	21	1	167.00	8.00	99.00	60.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCC................................................	22	1	162.00	39.00	35.00	84.00	4.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	158.00	59.00	47.00	52.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	157.00	33.00	55.00	38.00	31.00
..........................................................................................TGAACACAGCTGGCGGTATC..................................................	20	1	156.00	11.00	91.00	52.00	2.00
..........................................................................................TGAACACAGCTGGAGGTAT...................................................	19	1	146.00	2.00	87.00	56.00	1.00
..........................................................................................TGAACACAGCTGGTGGCATC..................................................	20	1	145.00	4.00	80.00	61.00	0.00
..........................................................................................TGAACACAGCTGGTGGCAT...................................................	19	1	144.00	4.00	70.00	69.00	1.00
......................................................................TTGAGTT-TATGT-TGCAAG......................................................................	18	1	140.00	5.00	71.00	64.00	0.00
...............................................TGGGATAC-ACCCTGTGCTCGC...........................................................................................	21	1	132.00	30.00	62.00	40.00	0.00
..........................................................................................TGAACACAGCTGGTGGTCT...................................................	19	1	122.00	0.00	27.00	95.00	0.00
..........................................................................................TGAACACAGCTGGAGGTATC..................................................	20	1	120.00	8.00	69.00	42.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATTT.................................................	21	1	90.00	38.00	31.00	20.00	1.00
..........................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	1	88.00	0.00	15.00	73.00	0.00
..........................................................................................TGAACACAGCTGGTGGTAA...................................................	19	1	86.00	16.00	42.00	25.00	3.00
..........................................................................................TGAACACAGCTGGTGGTGT...................................................	19	1	85.00	2.00	47.00	36.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGAA.............................................	25	1	83.00	17.00	27.00	39.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCTT................................................	22	1	83.00	19.00	33.00	31.00	0.00
..........................................................................................TGAACACAGCTGGGGGTATCC.................................................	21	1	82.00	2.00	49.00	29.00	2.00
..........................................................................................TGAACACAGCTGGTGGTGTCC.................................................	21	1	77.00	4.00	35.00	36.00	2.00
..........................................................................................TGAACACAGCTGGTGGGAT...................................................	19	1	74.00	5.00	29.00	40.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGAAA............................................	26	1	74.00	23.00	39.00	9.00	3.00
..........................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	74.00	1.00	56.00	15.00	2.00
..........................................................................................TGAACACAGCTGGTGGGATCC.................................................	21	1	73.00	2.00	29.00	39.00	3.00
..........................................................................................TGAACACAGCTGGTGGTCTC..................................................	20	1	73.00	0.00	16.00	56.00	1.00
..........................................................................................TGAACACAGCTGGTGGGATC..................................................	20	1	70.00	2.00	34.00	33.00	1.00
..........................................................................................TGAACACAGCTGGTGGAATCC.................................................	21	1	68.00	3.00	54.00	11.00	0.00
..........................................................................................TGAACACAGCTGGGGGTATC..................................................	20	1	67.00	3.00	34.00	29.00	1.00
..........................................................................................TGAACACAGCTGGTGGTGTC..................................................	20	1	63.00	2.00	40.00	20.00	1.00
..........................................................................................TGAACACAGCTGGGGGTAT...................................................	19	1	62.00	2.00	32.00	28.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCACT..............................................	24	1	61.00	19.00	25.00	16.00	1.00
..........................................................................................TGAGCACAGCTGGTGGTATCC.................................................	21	1	61.00	1.00	34.00	26.00	0.00
..........................................................................................TGAACACAGCTGGTGGAAT...................................................	19	1	60.00	2.00	47.00	11.00	0.00
..........................................................................................TGAACACAGCGGGTGGTATCC.................................................	21	1	58.00	1.00	44.00	12.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATCCTT...............................................	23	1	57.00	13.00	25.00	19.00	0.00
..........................................................................................TGAGCACAGCTGGTGGTAT...................................................	19	1	56.00	3.00	29.00	23.00	1.00
..........................................................................................TGAACACAGCTGGTGGTAGCC.................................................	21	1	55.00	1.00	29.00	25.00	0.00
...............................................TGGGATAC-ACCCTGTGCTCG............................................................................................	20	1	55.00	24.00	11.00	20.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATTC.................................................	21	1	51.00	10.00	17.00	24.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAC...............................................	23	1	50.00	19.00	16.00	15.00	0.00
..........................................................................................TGAACACAGCTGGTGGAATC..................................................	20	1	49.00	0.00	39.00	10.00	0.00
.........................................................................................CTGAACACAGCTGGTGGTATCC.................................................	22	1	49.00	0.00	28.00	20.00	1.00
..........................................................................................TGAAAACAGCTGGTGGTATC..................................................	20	1	48.00	1.00	32.00	15.00	0.00
...............................................TGGGATAC-ACCCTGTGCTCGCTT.........................................................................................	23	1	48.00	5.00	24.00	19.00	0.00
..........................................................................................TGAACACAGCTGGCGGCATCC.................................................	21	1	46.00	0.00	31.00	15.00	0.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	45.00	5.00	15.00	25.00	0.00
..........................................................................................TGAACACAGCTGGTGATATCC.................................................	21	1	45.00	2.00	22.00	21.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATAA.................................................	21	1	43.00	6.00	16.00	5.00	16.00
..........................................................................................CGAACACAGCTGGTGGTATCC.................................................	21	1	43.00	2.00	18.00	23.00	0.00
..........................................................................................TGAACACAGCTAGTGGTATCC.................................................	21	1	43.00	5.00	13.00	24.00	1.00
..........................................................................................TGAAAACAGCTGGTGGTAT...................................................	19	1	43.00	3.00	26.00	14.00	0.00
..........................................................................................TGAACACGGCTGGTGGTATCC.................................................	21	1	42.00	0.00	23.00	19.00	0.00
..........................................................................................TGAACGCAGCTGGTGGTATCC.................................................	21	1	41.00	2.00	24.00	15.00	0.00
..........................................................................................TGAACACAGCCGGTGGTATCC.................................................	21	1	41.00	2.00	17.00	22.00	0.00
..........................................................................................TGAACACCGCTGGTGGTAT...................................................	19	1	41.00	0.00	7.00	34.00	0.00
..........................................................................................CGAACACAGCTGGTGGTATC..................................................	20	1	41.00	3.00	24.00	14.00	0.00
..........................................................................................TGAACACAGCTGGTGGCATCCA................................................	22	1	41.00	5.00	22.00	13.00	1.00
..........................................................................................TGAACACAGCTGGTGCTATCC.................................................	21	1	41.00	3.00	25.00	13.00	0.00
..........................................................................................TGAACACAGCTGGTGTTATCC.................................................	21	1	40.00	12.00	16.00	11.00	1.00
..........................................................................................CGAACACAGCTGGTGGTAT...................................................	19	1	40.00	2.00	23.00	14.00	1.00
..........................................................................................TGAACACAGCTCGTGGTATCC.................................................	21	1	39.00	2.00	18.00	18.00	1.00
..........................................................................................TGAGCACAGCTGGTGGTATC..................................................	20	1	38.00	0.00	22.00	16.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGAG.............................................	25	1	38.00	10.00	19.00	7.00	2.00
..........................................................................................TGAACACAGCTGGTGGTAG...................................................	19	1	38.00	0.00	20.00	17.00	1.00
..........................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	38.00	2.00	21.00	15.00	0.00
..........................................................................................TGAACACAGCTGGTTGTATCC.................................................	21	1	38.00	7.00	8.00	23.00	0.00
..........................................................................................TGAACACAGCTGGCGGTATCCA................................................	22	1	38.00	3.00	21.00	13.00	1.00
..........................................................................................TGAACACAGCTGGCGGCATC..................................................	20	1	38.00	0.00	19.00	19.00	0.00
..........................................................................................TGAACACAGCTGGCGGCAT...................................................	19	1	37.00	0.00	21.00	16.00	0.00
.........................................................................................CTGAACACAGCTGGTGGTATC..................................................	21	1	37.00	5.00	16.00	15.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	37.00	3.00	20.00	14.00	0.00
..........................................................................................TAAACACAGCTGGTGGTATCC.................................................	21	1	36.00	5.00	13.00	18.00	0.00
.........................................................................................GTGAACACAGCTGGTGGTATCC.................................................	22	1	36.00	16.00	15.00	5.00	0.00
..........................................................................................TGAACGCAGCTGGTGGTAT...................................................	19	1	35.00	2.00	21.00	12.00	0.00
..........................................................................................TGAACACAGCTGGTAGTATCC.................................................	21	1	35.00	2.00	7.00	26.00	0.00
..........................................................................................TGAACACAGCTAGTGGTAT...................................................	19	1	35.00	5.00	5.00	25.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCATT..............................................	24	1	35.00	8.00	14.00	13.00	0.00
..........................................................................................TGAACACAGCTGTTGGTATCC.................................................	21	1	35.00	9.00	15.00	11.00	0.00
..........................................................................................TGAACACAGCTGGTGGTATCCAT...............................................	23	1	34.00	11.00	16.00	7.00	0.00
..........................................................................................TGAACACAGCTGGTAGTAT...................................................	19	1	34.00	1.00	7.00	25.00	1.00
..........................................................................................TGAACACGGCTGGTGGTAT...................................................	19	1	33.00	3.00	18.00	12.00	0.00
..........................................................................................TGAACACAGCGGGTGGTAT...................................................	19	1	33.00	0.00	24.00	9.00	0.00
..........................................................................................TGAACACAGCTGGTGGTACCC.................................................	21	1	32.00	1.00	20.00	10.00	1.00
..........................................................................................TGAACACAGCTGGTGGTAGC..................................................	20	1	32.00	1.00	18.00	13.00	0.00

droGri2

AAGCT---------TTTCGC-------------TGTGCAATTGCCACTGGGATATTGCCCTGTGCTCGCTTTGAATATTGTGTAAGCAAGTGAACACAGCTGGTGGTATCCAGTGGCCGTT--TGGCGCAC-ATgcaacaa---caac---aacaaga-g	Size	Hit Count	Total Norm	V109 Male body
..........................................................................................TGAACACAGCTGGTGGTATCC.................................................	21	1	76.00	76.00
..........................................................................................TGAACACAGCTGGTGGTATC..................................................	20	1	44.00	44.00
..........................................................................................TGAACACAGCTGGTGGTAT...................................................	19	1	41.00	41.00
..........................................................................................TGAACACAGCTGGTGGTATCCA................................................	22	1	8.00	8.00
......................................................................TTGAATATTGTGTAAGCAAG......................................................................	20	1	4.00	4.00
...............................................TGGGATATTGCCCTGTGCTCGCT..........................................................................................	23	1	4.00	4.00
..........................................................................................TGAACACAGCTGGTGGTATCCAGT..............................................	24	1	4.00	4.00
...............................................TGGGATATTGCCCTGTGCTCG............................................................................................	21	1	3.00	3.00
..........................................................................................TGAACACAGCTGGTGGTATCCAG...............................................	23	1	3.00	3.00
..........................................................................................TGAACACAGCTGGTGGTATT..................................................	20	1	3.00	3.00
..........................................................................................TGAACACAGCTGGTGGTATA..................................................	20	1	2.00	2.00
..........................................................................................TGAACACAGCTGGTGGTATCCT................................................	22	1	2.00	2.00
..........................................................................................TGGACACAGCTGGTGGTATCC.................................................	21	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGGCATCC.................................................	21	1	1.00	1.00
..........................................................................................TGAAAACAGCTGGTGGTATCC.................................................	21	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGGTC....................................................	18	1	1.00	1.00
..........................................................................................TGAACAAAGCTGGTGGTATC..................................................	20	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGGTCTCC.................................................	21	1	1.00	1.00
..........................................................................................TGAACACAGCTTGTGGTATCC.................................................	21	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGGTCT...................................................	19	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGCTCTCC.................................................	21	1	1.00	1.00
..........................................................................................TGAACACAGATGGTGGTATC..................................................	20	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATCT.................................................	21	1	1.00	1.00
..........................................................................................TGCACACAGCTGGTGGTATCCAGT..............................................	24	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGGTTT...................................................	19	1	1.00	1.00
..........................................................................................TGAATACAGCTGGTGGTATC..................................................	20	1	1.00	1.00
..........................................................................................TGAACCCAGCTGGTGGTATCC.................................................	21	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGCTAT...................................................	19	1	1.00	1.00
..........................................................................................TGAACACAGCTGGTGGTATCA.................................................	21	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image