dme-mir-314- Best orthologs

dme-mir-314	chr3L:11766112-11766201 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11766181-11766201
   star strand at position 11766114-11766139
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:11766097-11766216 +		1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAAAC-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSim1	chr3L:11131600-11131719 +	LASTZ	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSec1	super_0:3951120-3951239 +	LASTZ	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droYak2	chr3L:11794902-11795021 +	LASTZ	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----CCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEre2	scaffold_4784:11743709-11743828 +	LASTZ	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAGAA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEug1	scf7180000409711:3637506-3637625 +	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droBia1	scf7180000302334:214342-214460 +	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT--TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droTak1	scf7180000414445:437081-437200 -	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEle1	scf7180000490993:2023315-2023433 -	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droRho1	scf7180000779160:76370-76488 -	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droFic1	scf7180000454113:2923978-2924097 -	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droKik1	scf7180000302391:1074943-1075062 -	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droAna3	scaffold_13337:6019503-6019620 +	LASTZ	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droBip1	scf7180000396518:82752-82869 +	LASTZ	4	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
dp4	chrXR_group8:4342117-4342235 -	LASTZ	1	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droPer1	super_29:576219-576337 -	LASTZ	1	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droWil1	scaffold_180949:2570151-2570270 -	LASTZ	1	TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droVir3	scaffold_13049:23988146-23988266 +	LASTZ	1	TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAACGA----ATTCAACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT
droMoj3	scaffold_6680:18619757-18619881 +	LASTZ	1	TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCATT-GTTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT
droGri2	scaffold_15110:9705224-9705329 -	LASTZ	1	TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------GTTGGATTTCCT------AGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCATT

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAAAC-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSim1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSec1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droYak2	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----CCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEre2	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAGAA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEug1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droBia1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT--TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droTak1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEle1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droRho1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droFic1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droKik1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droAna3	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droBip1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
dp4	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droPer1	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droWil1	TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droVir3	TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAACGA----ATTCAACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT
droMoj3	TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCATT-GTTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT
droGri2	TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------GTTGGATTTCCT------AGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCATT

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1038.00	164.00	5.00	616.00	253.00
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	1003.00	553.00	4.00	301.00	145.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	555.00	189.00	1.00	279.00	86.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	368.00	10.00	5.00	200.00	153.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	348.00	17.00	2.00	85.00	244.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	250.00	85.00	2.00	90.00	73.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	177.00	1.00	0.00	140.00	36.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	162.00	21.00	2.00	135.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	75.00	1.00	0.00	65.00	9.00
..................TAACTTGTGTGGCTTCGAATGTACC...................................................................................	25	1	74.00	0.00	1.00	37.00	36.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCT........................................	24	1	58.00	0.00	0.00	25.00	33.00
..........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	52.00	0.00	0.00	36.00	16.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	38.00	6.00	1.00	17.00	14.00
..........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	37.00	0.00	1.00	18.00	18.00
..........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	36.00	0.00	0.00	14.00	22.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	31.00	2.00	0.00	27.00	2.00
..........................................................................................TATTCGACCCAATAAGTTCGGA..............	22	1	28.00	0.00	0.00	14.00	14.00
...............................................................CCCGT-GTCGGATTTTGTTACCTCTGG....................................	26	1	24.00	0.00	0.00	3.00	21.00
..........................................................................................TATTCCAGCCAATAAGTTCGT...............	21	1	20.00	0.00	0.00	13.00	7.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	20.00	0.00	0.00	15.00	5.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	20.00	1.00	0.00	2.00	17.00
...............................................................CCCGT-GTCGGATTTTGTTACCT........................................	22	1	19.00	0.00	0.00	5.00	14.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	16.00	0.00	0.00	15.00	1.00
...................................................................................................CAATAAGTTCGGCCACGA.........	18	1	14.00	4.00	0.00	6.00	4.00
..........................................................................................TATTCCAGCCAATAAGTTCGGA..............	22	1	14.00	0.00	0.00	4.00	10.00
..........................................................................................TATTCGAGCCAATAATTTCGT...............	21	1	14.00	0.00	0.00	1.00	13.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	14.00	1.00	0.00	7.00	6.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	14.00	13.00	0.00	1.00	0.00
..............................................................................................CGAGCCAATAAGTTCGGA..............	18	1	13.00	1.00	0.00	7.00	5.00
..........................................................................................TATTCGATCCAATAAGTTCGGC..............	22	1	13.00	0.00	0.00	5.00	8.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCTCTGGT...................................	29	1	12.00	1.00	0.00	7.00	4.00
..........................................................................................TATTCGAGCCAATAATTTCGGA..............	22	1	12.00	0.00	0.00	8.00	4.00
...............................................................CCCGT-GTCGGATTTTGTTAC..........................................	20	1	12.00	1.00	0.00	6.00	5.00
.................................................................CGT-GTCGGATTTTGTTACCTCTGG....................................	24	1	12.00	0.00	0.00	0.00	12.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	11.00	0.00	0.00	4.00	7.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	10.00	0.00	0.00	7.00	3.00
...................................................................T-GTCGGATTTTGTTACCTCTGG....................................	22	1	10.00	1.00	0.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	10.00	9.00	0.00	1.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGT...............	21	1	10.00	0.00	0.00	5.00	5.00
..........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	10.00	0.00	0.00	3.00	7.00
................CGTAACTTGTGTGGCTTCGAATGTACC...................................................................................	27	1	10.00	0.00	0.00	1.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	9.00	7.00	0.00	1.00	1.00
..........................................................................................TATTCGACCCAATAAGTTCGT...............	21	1	9.00	0.00	0.00	2.00	7.00
..........................................................................................TATTCxAGCCAATAAGTTCGGA..............	21	1	8.00	0.00	0.00	4.00	4.00
......................TTGTGTGGCTTCGAATGTACC...................................................................................	21	1	8.00	0.00	0.00	2.00	6.00
..........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	8.00	0.00	0.00	8.00	0.00
................................................................CCGT-GTCGGATTTTGTTACCT........................................	21	1	8.00	0.00	0.00	1.00	7.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	8.00	2.00	0.00	5.00	1.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	7.00	7.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	7.00	1.00	0.00	6.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	7.00	0.00	0.00	6.00	1.00
...............................................................CCCGT-GTCGGATTTTGTTACC.........................................	21	1	7.00	0.00	0.00	1.00	6.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	7.00	2.00	0.00	3.00	2.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCTCTGG....................................	28	1	7.00	1.00	0.00	2.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	6.00	1.00	0.00	2.00	3.00
..........................................................................................TATTCGAGCCAATAAGGTCGG...............	21	1	6.00	3.00	0.00	1.00	2.00
..........................................................................................TATTCxAGCCAATAAGTTCGT...............	20	1	6.00	0.00	0.00	3.00	3.00
.................GTAACTTGTGTGGCTTCGAATGTACCT..................................................................................	27	1	6.00	1.00	0.00	0.00	5.00
....................................ATGTACCTAGTTGAGGAAAA......................................................................	20	1	6.00	5.00	0.00	0.00	1.00
..........................................................................................TATTCGAxCCAATAAGTTCGGC..............	21	1	6.00	0.00	0.00	0.00	6.00
..........................................................................................TATTCGACCCAATAAGTTCGGG..............	22	1	6.00	0.00	0.00	3.00	3.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCTCTG.....................................	27	1	6.00	0.00	0.00	1.00	5.00
..........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	5.00	5.00	0.00	0.00	0.00
.......................................................AG-----TCCCGT-GTCGGATTTTGTTACCTC.......................................	26	1	5.00	0.00	0.00	0.00	5.00
...............................................................CCCGT-GTCGGATTTTGTTACCTCTG.....................................	25	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................TATTCGAGCCAATAAGTTCGAC..............	22	1	5.00	0.00	0.00	3.00	2.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCG........................................	24	1	5.00	0.00	0.00	2.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAC.............	23	1	5.00	0.00	0.00	2.00	3.00
...........................................................................................ATTCGAGCCAATAAGTTCGGA..............	21	1	5.00	1.00	0.00	4.00	0.00
....................................................AAAAG-----TCCCGT-GTCGGATT.................................................	19	1	5.00	0.00	0.00	1.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCC.............	23	1	5.00	1.00	0.00	0.00	4.00
..........................................................................................TATTCGACCCAATAAGTTCGGC..............	22	1	5.00	0.00	0.00	4.00	1.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACC.........................................	23	1	4.00	0.00	0.00	2.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	4.00	3.00	0.00	1.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGG..............	22	1	4.00	0.00	0.00	2.00	2.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCTC.......................................	25	1	4.00	0.00	0.00	2.00	2.00
..........................................................................................TATTCGAGTCAATAAGTTCGGA..............	22	1	4.00	2.00	0.00	2.00	0.00
..............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGG..............	22	1	4.00	0.00	0.00	2.00	2.00
.................TTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	4.00	0.00	0.00	1.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTC.............	23	1	4.00	0.00	0.00	4.00	0.00
...................AACTTGTGTGGCTTCGAATGTACC...................................................................................	24	1	4.00	1.00	0.00	2.00	1.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCC........................................	24	1	4.00	0.00	0.00	1.00	3.00
..........................................................................................TAxTCCAGCCAATAAGTTCGG...............	20	1	4.00	0.00	0.00	3.00	1.00
..........................................................................................TATTCGAGCCAATAACTTCGT...............	21	1	4.00	0.00	0.00	1.00	3.00
..........................................................................................TATTCGAGCCAATTAGTTCGGT..............	22	1	4.00	4.00	0.00	0.00	0.00
.................................................................CGT-GTCGGATTTTGTTACC.........................................	19	1	4.00	0.00	0.00	0.00	4.00
..............................................TTGAGGAAAAG-----TCCCGT-GTCGGATTTT...............................................	27	1	4.00	0.00	0.00	0.00	4.00
...............................................................CCCGT-GTCGGATTTTGTTACCC........................................	22	1	3.00	0.00	0.00	1.00	2.00
................................................................................................AGCCAATAAGTTCGGAAA............	18	1	3.00	0.00	0.00	0.00	3.00
.................GTAACTTGTGTGGCTTCGAATGTA.....................................................................................	24	1	3.00	1.00	0.00	0.00	2.00
..................TAACTTGTGTGGCTTCGAATGTAAC...................................................................................	25	1	3.00	0.00	0.00	2.00	1.00
..........................................................................................TATTCxAGCCAATAAGTTCGGT..............	21	1	3.00	0.00	0.00	1.00	2.00
.................GTAACTTGTCTGGCTTCGAATGTACC...................................................................................	26	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	3.00	0.00	0.00	0.00	3.00
..................................GAATGTACCTAGTTGAGGAAAA......................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................CCCGT-GTCGGATTTTGTTACCTC.......................................	23	1	3.00	0.00	0.00	0.00	3.00
................................................................CCGT-GTCGGATTTTGTTACCTCTGG....................................	25	1	3.00	0.00	0.00	0.00	3.00
..........................................CTAGTTGAGGAAAAG-----TCCCGT-GTCGGATT.................................................	29	1	3.00	0.00	0.00	3.00	0.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	3.00	1.00	0.00	2.00	0.00

droSec1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	17573.00	11092.00	5410.00	1071.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	10216.00	7654.00	2025.00	537.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	4626.00	4173.00	179.00	274.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	3573.00	2124.00	1252.00	197.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	1040.00	337.00	623.00	80.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	558.00	467.00	65.00	26.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	417.00	315.00	88.00	14.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	355.00	90.00	262.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	255.00	186.00	56.00	13.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	149.00	127.00	15.00	7.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	142.00	84.00	50.00	8.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	134.00	78.00	50.00	6.00
..........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	123.00	22.00	100.00	1.00
...................................................................................................CAATAAGTTCGGCCACGA.........	18	1	118.00	1.00	116.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	109.00	70.00	39.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	94.00	92.00	1.00	1.00
....................................ATGTACCTAGTTGAGGAAAA......................................................................	20	1	93.00	23.00	68.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	66.00	65.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTTGGT..............	22	1	65.00	51.00	14.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	55.00	25.00	28.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTAG................	20	1	54.00	54.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	54.00	34.00	15.00	5.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	53.00	22.00	9.00	22.00
..........................................................................................TATTCGAGCCAATAAGTTGGG...............	21	1	52.00	51.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGA..........................................................................................	19	1	50.00	3.00	47.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	47.00	22.00	24.00	1.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	46.00	8.00	32.00	6.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	45.00	8.00	36.00	1.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	38.00	18.00	15.00	5.00
.................GTAACTTGTGTGGCTTCGAATG.......................................................................................	22	1	37.00	25.00	9.00	3.00
......................................GTACCTAGTTGAGGAAAA......................................................................	18	1	37.00	0.00	37.00	0.00
..........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	35.00	5.00	28.00	2.00
...................................AATGTACCTAGTTGAGGAAAA......................................................................	21	1	35.00	6.00	28.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTGG................	20	1	34.00	32.00	2.00	0.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	34.00	10.00	23.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	30.00	6.00	24.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	30.00	23.00	6.00	1.00
.................GTAACTTGTGTGGCTTCGAATGT......................................................................................	23	1	29.00	23.00	5.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	29.00	19.00	9.00	1.00
............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	26.00	4.00	21.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTTG................	20	1	26.00	26.00	0.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	24.00	7.00	14.00	3.00
................................................................................TTACCTCTGGTATTCGAGC...........................	19	1	23.00	0.00	23.00	0.00
..............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	23.00	4.00	18.00	1.00
.................GTAACTTGTGTGGCTTCGAA.........................................................................................	20	1	23.00	4.00	19.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	23.00	13.00	10.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA.....................................................................................	24	1	22.00	12.00	8.00	2.00
..........................................................................................TATTCGAGCCxATAAGTTCGG...............	20	1	22.00	7.00	15.00	0.00
..........................................................................................TATTCGTGCCAATAAGTTCGG...............	21	1	22.00	4.00	17.00	1.00
..........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	21.00	16.00	5.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	21.00	13.00	8.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	20.00	12.00	6.00	2.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	20.00	15.00	4.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	20.00	12.00	7.00	1.00
..........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	19.00	3.00	16.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGGA..............	22	1	19.00	16.00	0.00	3.00
............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	19.00	13.00	5.00	1.00
..........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	19.00	5.00	12.00	2.00
..........................................................................................TATTCGAGCTAATAAGTTCGG...............	21	1	19.00	9.00	10.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTGGGT..............	22	1	18.00	18.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTTGGA..............	22	1	18.00	7.00	10.00	1.00
....................................ATGTACCTAGTTGAGGAAAAG-----T...............................................................	22	1	18.00	2.00	16.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	17.00	10.00	7.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	17.00	7.00	5.00	5.00
...........................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	16.00	13.00	3.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	16.00	6.00	9.00	1.00
..........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	16.00	11.00	4.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	16.00	11.00	2.00	3.00
..................TAACTTGTGTGGCTTCGAATGTACC...................................................................................	25	1	16.00	12.00	3.00	1.00
..........................................................................................TATTCGAGCTAATAAGTTCGGT..............	22	1	15.00	8.00	6.00	1.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	15.00	9.00	4.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	15.00	10.00	1.00	4.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	15.00	8.00	4.00	3.00
..........................................................................................TATCCGAGCCAATAAGTTCGGT..............	22	1	15.00	12.00	2.00	1.00
..........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	14.00	5.00	7.00	2.00
..........................................................................................TATTCGAGTCAATAAGTTCGGT..............	22	1	14.00	1.00	13.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	14.00	5.00	8.00	1.00
..........................................................................................TATTCGAGCCxATAAGTTCGGT..............	21	1	13.00	5.00	8.00	0.00
.............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	13.00	1.00	12.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	13.00	10.00	3.00	0.00
..........................................................................ATTTTGTTACCTCTGGTATTCGAGC...........................	25	1	13.00	0.00	13.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	13.00	5.00	5.00	3.00
........................................ACCTAGTTGAGGAAAAG-----T...............................................................	18	1	13.00	0.00	12.00	1.00
.....................................TGTACCTAGTTGAGGAAAA......................................................................	19	1	13.00	0.00	13.00	0.00
..........................................................................................GATTCGAGCCAATAAGTTCGG...............	21	1	13.00	2.00	11.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	12.00	10.00	2.00	0.00
............................................................................TTTGTTACCTCTGGTATTCGAGC...........................	23	1	12.00	0.00	12.00	0.00
..........................................................................................TCTTCGAGCCAATAAGTTCGGT..............	22	1	12.00	8.00	3.00	1.00
..........................................................................................TCTTCGAGCCAATAAGTTCGG...............	21	1	12.00	6.00	5.00	1.00
..............................................................................TGTTACCTCTGGTATTCGAGCC..........................	22	1	12.00	3.00	8.00	1.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCTCTG.....................................	27	1	12.00	0.00	11.00	1.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	12.00	2.00	9.00	1.00
..........................................................................................TATTCGAACCAATAAGTTCGG...............	21	1	11.00	5.00	5.00	1.00
...................AACTTGTGTGGCTTCGAA.........................................................................................	18	1	11.00	0.00	11.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGGA..............	20	1	11.00	6.00	4.00	1.00
..........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	11.00	8.00	3.00	0.00
..........................................................................................TATTGGAGCCAATAAGTTCGG...............	21	1	11.00	10.00	1.00	0.00
........................................................G-----TCCCGT-GTCGGATTTTGTTACCT........................................	24	1	10.00	0.00	10.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	10.00	4.00	4.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTGGGA..............	22	1	10.00	10.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	10.00	8.00	2.00	0.00

droYak2

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----CCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	6511.00	368.00	182.00	5483.00	467.00	11.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	3328.00	150.00	80.00	2869.00	224.00	5.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2164.00	11.00	44.00	2016.00	87.00	6.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	790.00	83.00	20.00	636.00	48.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	215.00	9.00	2.00	192.00	12.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	194.00	0.00	5.00	155.00	19.00	15.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	166.00	40.00	6.00	92.00	21.00	7.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	47.00	1.00	1.00	39.00	5.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	44.00	0.00	0.00	40.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	42.00	0.00	3.00	34.00	5.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	35.00	0.00	0.00	23.00	12.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	29.00	1.00	0.00	24.00	4.00	0.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	26.00	2.00	0.00	18.00	6.00	0.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	24.00	4.00	3.00	6.00	10.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	22.00	4.00	1.00	16.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	18.00	3.00	1.00	9.00	0.00	5.00
.......................................................AA-----CCCCAT-GTCGGATTTTGTTACCT........................................	25	1	16.00	0.00	0.00	2.00	0.00	14.00
.......................................................AA-----CCCCAT-GTCGGATTTTGTTACCTCTG.....................................	28	1	16.00	0.00	0.00	1.00	0.00	15.00
..........................................................................................TATTCGAGCCACTAAGTTCGG...............	21	1	15.00	1.00	2.00	2.00	10.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	14.00	0.00	0.00	13.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	13.00	0.00	1.00	8.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	13.00	2.00	3.00	6.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	12.00	0.00	0.00	9.00	3.00	0.00
..........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	11.00	1.00	0.00	6.00	4.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	10.00	0.00	0.00	10.00	0.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	10.00	0.00	0.00	5.00	5.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCG................	20	1	9.00	1.00	0.00	7.00	1.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	9.00	1.00	0.00	8.00	0.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	9.00	0.00	0.00	8.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	9.00	0.00	0.00	8.00	1.00	0.00
....................................ATGTACCTAGTTGAGGAAAA......................................................................	20	1	9.00	2.00	0.00	7.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	9.00	1.00	0.00	8.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	8.00	0.00	1.00	4.00	3.00	0.00
....................................ATGTACCTAGTTGAGGAAA.......................................................................	19	1	8.00	2.00	1.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	8.00	1.00	0.00	6.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGA..........................................................................................	19	1	7.00	2.00	0.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCCATAAGTTCG................	20	1	7.00	0.00	0.00	5.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	7.00	0.00	0.00	6.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	7.00	0.00	1.00	3.00	1.00	2.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	7.00	0.00	0.00	7.00	0.00	0.00
..........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	7.00	2.00	1.00	1.00	3.00	0.00
.............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	7.00	3.00	0.00	4.00	0.00	0.00
..........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	7.00	0.00	0.00	7.00	0.00	0.00
..........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	7.00	0.00	1.00	5.00	1.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	6.00	0.00	0.00	6.00	0.00	0.00
..........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	6.00	2.00	1.00	1.00	2.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	6.00	1.00	0.00	5.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	6.00	0.00	0.00	4.00	0.00	2.00
...................................................................................................CAATAAGTTCGGCCACGA.........	18	1	6.00	3.00	0.00	2.00	0.00	1.00
..........................................................................................TATTCGAGCCTATAAGTTCGG...............	21	1	6.00	2.00	0.00	3.00	1.00	0.00
..............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	6.00	4.00	0.00	2.00	0.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	6.00	0.00	1.00	4.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	6.00	1.00	0.00	5.00	0.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	6.00	1.00	0.00	4.00	1.00	0.00
........................................................A-----CCCCAT-GTCGGATTTTGTTACC.........................................	23	1	5.00	0.00	0.00	1.00	0.00	4.00
..........................................................................................TATTCGAGCCAATGAGTTCGGT..............	22	1	5.00	0.00	1.00	4.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	5.00	1.00	1.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	5.00	0.00	1.00	4.00	0.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	5.00	0.00	1.00	2.00	2.00	0.00
.......................................................AA-----CCCCAT-GTCGGATTTTGTTACCTCTGG....................................	29	1	5.00	0.00	0.00	1.00	0.00	4.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	5.00	0.00	3.00	2.00	0.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	5.00	0.00	0.00	4.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	5.00	1.00	0.00	1.00	0.00	3.00
..........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	5.00	0.00	0.00	5.00	0.00	0.00
.................................CGAATGTACCTAGTTGAGGAAA.......................................................................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	5.00	1.00	0.00	4.00	0.00	0.00
..........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	5.00	1.00	0.00	4.00	0.00	0.00
...........................................TAGTTGAGGAAAAA-----CCCCAT-GTCGGAT..................................................	27	1	4.00	0.00	0.00	2.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	4.00	0.00	1.00	3.00	0.00	0.00
..........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	2.00	2.00	0.00
..........................................................................................TATTCGAACCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	4.00	0.00	0.00
..............................................................................TGTTACCTCTGGTATTCGAGCC..........................	22	1	4.00	1.00	0.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATGAGTTCGG...............	21	1	4.00	0.00	2.00	1.00	1.00	0.00
...................................AATGTACCTAGTTGAGGAAA.......................................................................	20	1	4.00	3.00	0.00	1.00	0.00	0.00
..........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	4.00	1.00	1.00	0.00	2.00	0.00
................................................................CCAT-GTCGGATTTTGTTACCT........................................	21	1	4.00	0.00	0.00	2.00	0.00	2.00
.........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	4.00	1.00	0.00	3.00	0.00	0.00
..........................................................................................TATTCGCGCCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	2.00	2.00	0.00
..........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	4.00	0.00	1.00	1.00	2.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	4.00	0.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	4.00	0.00	0.00
..........................................................................................TATTCGAACCAATAAGTTCGGT..............	22	1	4.00	0.00	0.00	3.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	4.00	1.00	0.00	3.00	0.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGGA..............	20	1	4.00	0.00	0.00	4.00	0.00	0.00
..........................................................................................TATTCGGGCCAATAAGTTCG................	20	1	4.00	0.00	0.00	4.00	0.00	0.00
..........................................................................................TCTTCGAGCCAATAAGTTCGG...............	21	1	3.00	0.00	1.00	2.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	3.00	0.00	0.00	2.00	1.00	0.00
..........................................................................................TAATCGAGCCAATAAGTTCGG...............	21	1	3.00	1.00	0.00	1.00	1.00	0.00
................................................................................TTACCTCTGGTATTCGAGCC..........................	20	1	3.00	0.00	0.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGT...............	21	1	3.00	0.00	0.00	1.00	2.00	0.00
..........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	3.00	0.00	0.00	2.00	0.00	1.00
.................GTAACTTGTGTGGCTTCGAATGT......................................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGGTCGG...............	21	1	3.00	1.00	0.00	1.00	1.00	0.00
...........................................................................TTTTGTTACCTCTGGTATTCGAGC...........................	24	1	3.00	1.00	0.00	1.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	3.00	1.00	0.00	2.00	0.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGGT..............	22	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................................................GTTACCTCTGGTATTCGAGCCA.........................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
.....................CTTGTGTGGCTTCGAATGTACC...................................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00

droEre2

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAGAA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	2706.00	368.00	742.00	0.00	1596.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	1072.00	98.00	274.00	0.00	700.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	611.00	5.00	120.00	0.00	486.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	566.00	102.00	106.00	0.00	358.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	166.00	47.00	15.00	0.00	104.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	75.00	4.00	3.00	0.00	68.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	73.00	7.00	31.00	0.00	35.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	51.00	2.00	0.00	0.00	49.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	47.00	3.00	11.00	0.00	33.00
....................................ATGTACCTAGTTGAGGAAGA......................................................................	20	1	34.00	11.00	1.00	0.00	22.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	30.00	3.00	6.00	0.00	21.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	29.00	9.00	7.00	0.00	13.00
...................................................................................................CAATAAGTTCGGCCACGA.........	18	1	28.00	0.00	0.00	0.00	28.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	25.00	9.00	5.00	0.00	11.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	23.00	5.00	0.00	0.00	18.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	23.00	9.00	1.00	0.00	13.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	19.00	1.00	2.00	0.00	16.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	19.00	1.00	3.00	0.00	15.00
..........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	16.00	0.00	0.00	0.00	16.00
..........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	16.00	0.00	0.00	0.00	16.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	13.00	0.00	7.00	0.00	6.00
......................................GTACCTAGTTGAGGAAGA......................................................................	18	1	13.00	4.00	0.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	12.00	0.00	0.00	0.00	12.00
..........................................................................................TATTCGAGACAATAAGTTCGGT..............	22	1	12.00	0.00	1.00	0.00	11.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	12.00	2.00	2.00	0.00	8.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	12.00	2.00	8.00	0.00	2.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	11.00	1.00	2.00	0.00	8.00
..........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	10.00	1.00	0.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	10.00	0.00	2.00	0.00	8.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	10.00	1.00	0.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	10.00	7.00	1.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	8.00	3.00	3.00	0.00	2.00
..........................................................................................TATTCGAGCTAATAAGTTCGG...............	21	1	8.00	0.00	5.00	0.00	3.00
..........................................................................................TATTCGAGCCACTAAGTTCGG...............	21	1	8.00	0.00	7.00	0.00	1.00
.................GTAACTTGTGTGGCTTCGA..........................................................................................	19	1	7.00	5.00	0.00	0.00	2.00
............................................................................TTTGTTACCTCTGGTATTCGAGC...........................	23	1	7.00	4.00	0.00	0.00	3.00
..........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................TATTCGAGCCAATAAGTTCTGA..............	22	1	7.00	2.00	2.00	0.00	3.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	7.00	2.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	6.00	0.00	1.00	0.00	5.00
...........................................................................TTTTGTTACCTCTGGTATTCGAGC...........................	24	1	6.00	3.00	0.00	0.00	3.00
..................................GAATGTACCTAGTTGAGGAAGA......................................................................	22	1	6.00	2.00	0.00	0.00	4.00
..........................................................................................TATTCGAGCAAATAAGTTCG................	20	1	6.00	0.00	0.00	0.00	6.00
.............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	6.00	4.00	0.00	0.00	2.00
..........................................................................................TAGTCGAGCCAATAAGTTCGG...............	21	1	6.00	1.00	4.00	0.00	1.00
..........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	6.00	0.00	0.00	0.00	6.00
...................AACTTGTGTGGCTTCGAA.........................................................................................	18	1	6.00	4.00	0.00	0.00	2.00
..........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	6.00	1.00	3.00	0.00	2.00
..............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	6.00	3.00	1.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	6.00	0.00	3.00	0.00	3.00
...................................AATGTACCTAGTTGAGGAAGA......................................................................	21	1	5.00	2.00	0.00	0.00	3.00
..........................................................................................TAATCGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	1.00	0.00	4.00
..........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	5.00	1.00	2.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	2.00	0.00	3.00
...............................................................................GTTACCTCTGGTATTCGAGC...........................	20	1	5.00	5.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	5.00	2.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	5.00	0.00	5.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	5.00	1.00	2.00	0.00	2.00
..........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	4.00	0.00	2.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	4.00	2.00	1.00	0.00	1.00
...........................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................TATTCTAGCCAATAAGTTCGGC..............	22	1	4.00	0.00	0.00	0.00	4.00
...........................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	4.00	0.00	2.00	0.00	2.00
............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	4.00	0.00	1.00	0.00	3.00
............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	4.00	1.00	0.00	0.00	3.00
..............................CTTCGAATGTACCTAGTTGAGGAAGA......................................................................	26	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	4.00	2.00	0.00	0.00	2.00
..........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	4.00	0.00	3.00	0.00	1.00
..............................................................................................CGAGCCAATAAGTTCGGA..............	18	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	4.00	1.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	4.00	1.00	0.00	0.00	3.00
..................TAACTTGTGTGGCTTCGAATGTACC...................................................................................	25	1	4.00	1.00	1.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	3.00	1.00	1.00	0.00	1.00
........................................................A-----TCCCAT-GTCGGATTTTGTTACCTCTGGT...................................	29	1	3.00	1.00	1.00	0.00	1.00
.......................TGTGTGGCTTCGAATGTACC...................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
.................GTAACTTGTGTGGCTTCG...........................................................................................	18	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	3.00	0.00	2.00	0.00	1.00
................................................................................TTACCTCTGGTATTCGAGC...........................	19	1	3.00	2.00	0.00	0.00	1.00
..........................................................................................TATTCGGGCCAATAAGTTCGGT..............	22	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	3.00	0.00	1.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAG................	20	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCCATAAGTTCGGA..............	22	1	3.00	1.00	1.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGCTCG................	20	1	3.00	0.00	1.00	0.00	2.00
..........................................................................................TATTCGATCCAATAAGTTCG................	20	1	3.00	0.00	0.00	0.00	3.00
.....................................TGTACCTAGTTGAGGAAGA......................................................................	19	1	3.00	2.00	0.00	0.00	1.00
.........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	3.00	0.00	1.00	0.00	2.00
..........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	3.00	1.00	1.00	0.00	1.00
..........................................................................................TATTCGACCCAATAAGTTCGGA..............	22	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	3.00	0.00	1.00	0.00	2.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	3.00	0.00	0.00	0.00	3.00
....................................ATGTACCTAGTTGAGGAA........................................................................	18	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCTGC..............	22	1	3.00	2.00	0.00	0.00	1.00
...........................................................................................ATTCGAGCCAATAAGTTCG................	19	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	3.00	0.00	0.00	0.00	3.00
......................TTGTGTGGCTTCGAATGTACCTAGTT..............................................................................	26	1	3.00	1.00	0.00	0.00	2.00

droEug1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droBia1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT--TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droTak1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droEle1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droRho1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droFic1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droKik1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droAna3

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	11841.00	10174.00	473.00	1155.00	39.00
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	8788.00	7544.00	360.00	838.00	46.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	3789.00	3338.00	233.00	212.00	6.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	2159.00	1895.00	114.00	147.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1671.00	1383.00	100.00	176.00	12.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	625.00	537.00	21.00	65.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	269.00	181.00	26.00	49.00	13.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	209.00	174.00	8.00	27.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	182.00	152.00	15.00	13.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGAT..............	22	1	157.00	149.00	7.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGCT..............	22	1	93.00	87.00	2.00	4.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	93.00	87.00	3.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	91.00	82.00	4.00	5.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	77.00	52.00	15.00	7.00	3.00
..........................................................................................TATTCGAGACAATAAGTTCGGT..............	22	1	67.00	62.00	4.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	61.00	52.00	5.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	60.00	44.00	3.00	13.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	58.00	56.00	0.00	2.00	0.00
..........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	52.00	45.00	4.00	3.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	46.00	19.00	23.00	3.00	1.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	46.00	39.00	7.00	0.00	0.00
..........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	40.00	35.00	0.00	5.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	39.00	37.00	1.00	1.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	39.00	32.00	5.00	2.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	35.00	29.00	5.00	1.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	35.00	34.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	35.00	33.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCATTAAGTTCGGT..............	22	1	33.00	31.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	32.00	32.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGGT..............	22	1	31.00	31.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	31.00	24.00	1.00	6.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	30.00	26.00	0.00	3.00	1.00
..........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	30.00	25.00	2.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCGGT..............	22	1	29.00	27.00	0.00	1.00	1.00
..........................................................................................TATTCGAGCCACTAAGTTCGG...............	21	1	29.00	27.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	29.00	14.00	1.00	14.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCG................	20	1	26.00	26.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAAGAAGTTCGGT..............	22	1	26.00	25.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	24.00	23.00	0.00	0.00	1.00
..........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	23.00	10.00	3.00	10.00	0.00
..........................................................................................TATTCGAGACAATAAGTTCG................	20	1	23.00	22.00	1.00	0.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	22.00	20.00	1.00	1.00	0.00
..........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	21.00	15.00	1.00	5.00	0.00
.........................................................................................GTATTCGAGCCAATAAGTTCGGT..............	23	1	21.00	17.00	3.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	21.00	20.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	21.00	14.00	4.00	3.00	0.00
..........................................................................................TATTCGAGCCATTAAGTTCGG...............	21	1	20.00	18.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	19.00	16.00	0.00	3.00	0.00
..........................................................................................TATACGAGCCAATAAGTTCGGT..............	22	1	18.00	17.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	18.00	13.00	2.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	17.00	11.00	0.00	4.00	2.00
..........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	17.00	11.00	1.00	5.00	0.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	16.00	8.00	2.00	3.00	3.00
............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	16.00	13.00	1.00	1.00	1.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	16.00	13.00	0.00	3.00	0.00
..........................................................................................TATTCGAGCCAAAAAGTTCGGT..............	22	1	16.00	16.00	0.00	0.00	0.00
..........................................................................................GATTCGAGCCAATAAGTTCGG...............	21	1	16.00	9.00	2.00	5.00	0.00
..........................................................................................TATTCGAGCCAATGAGTTCGGT..............	22	1	16.00	15.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCTATAAGTTCGGT..............	22	1	15.00	12.00	0.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAAATTCGGT..............	22	1	15.00	14.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAAGAAGTTCGG...............	21	1	15.00	15.00	0.00	0.00	0.00
..........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	15.00	0.00	4.00	11.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	15.00	12.00	2.00	1.00	0.00
..........................................................................................TATTCGAGTCAATAAGTTCGGT..............	22	1	14.00	10.00	2.00	2.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	14.00	12.00	2.00	0.00	0.00
..........................................................................................TATTCGAGCCAAAAAGTTCGG...............	21	1	14.00	14.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	14.00	12.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCG................	20	1	14.00	13.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	14.00	11.00	1.00	2.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	14.00	9.00	0.00	5.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGAA..............	22	1	14.00	11.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	14.00	11.00	1.00	2.00	0.00
..........................................................................................TATACGAGCCAATAAGTTCGG...............	21	1	13.00	13.00	0.00	0.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	13.00	11.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCG................	20	1	13.00	12.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAGGTTCGGT..............	22	1	12.00	10.00	1.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGCA..............	22	1	12.00	10.00	2.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGT...............	21	1	12.00	10.00	2.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	12.00	11.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	12.00	9.00	0.00	3.00	0.00
..........................................................................................GATTCGAGCCAATAAGTTCGGT..............	22	1	12.00	10.00	0.00	2.00	0.00
..........................................................................................TCTTCGAGCCAATAAGTTCGGT..............	22	1	12.00	11.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	11.00	5.00	0.00	6.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	11.00	10.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	11.00	4.00	0.00	6.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	11.00	6.00	0.00	5.00	0.00
..........................................................................................TATTCGAGCAAATAAGTTCGGT..............	22	1	11.00	8.00	2.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCG................	20	1	11.00	11.00	0.00	0.00	0.00
..................TAACTTGTGTGGCTTCGAATGTACC...................................................................................	25	1	11.00	9.00	1.00	1.00	0.00
..........................................................................................TATTCGGGCCAATAAGTTCGGT..............	22	1	10.00	8.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	10.00	9.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	10.00	8.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	10.00	7.00	1.00	2.00	0.00
..........................................................................................TGTTCGAGCCAATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCG................	20	1	10.00	10.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	10.00	7.00	2.00	0.00	1.00
..........................................................................................TATCCGAGCCAATAAGTTCGGT..............	22	1	10.00	7.00	0.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAAGTGCGG...............	21	1	10.00	0.00	0.00	10.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCG................	20	1	9.00	9.00	0.00	0.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	9.00	8.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGGA..............	22	1	9.00	9.00	0.00	0.00	0.00

droBip1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

dp4

TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	5749.00	3951.00	565.00	1225.00	8.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	2908.00	2089.00	198.00	606.00	15.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2051.00	1798.00	17.00	234.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	600.00	377.00	79.00	135.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	234.00	97.00	89.00	41.00	7.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	154.00	132.00	4.00	14.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	114.00	70.00	5.00	32.00	7.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	65.00	53.00	2.00	9.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	34.00	22.00	3.00	9.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	31.00	19.00	5.00	7.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	28.00	5.00	18.00	3.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	19.00	8.00	1.00	9.00	1.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	19.00	7.00	12.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	12.00	5.00	3.00	4.00	0.00
..................TAACTTGTGTGGCTTCGAATGTACC...................................................................................	25	1	12.00	5.00	4.00	0.00	3.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	11.00	3.00	3.00	5.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	10.00	4.00	4.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	10.00	7.00	1.00	1.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	9.00	5.00	1.00	2.00	1.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	9.00	5.00	1.00	3.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	8.00	2.00	2.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	8.00	7.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	8.00	3.00	1.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	8.00	3.00	2.00	1.00	2.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	8.00	3.00	3.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	8.00	6.00	1.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	7.00	2.00	1.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGATCGG...............	21	1	7.00	1.00	1.00	5.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	7.00	2.00	1.00	4.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	7.00	5.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	6.00	5.00	0.00	1.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	6.00	5.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	6.00	2.00	1.00	3.00	0.00
..........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	6.00	1.00	5.00	0.00	0.00
.............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	6.00	2.00	4.00	0.00	0.00
..........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	6.00	4.00	0.00	2.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	6.00	5.00	0.00	1.00	0.00
....................................ATGTACCTAGTTGAGGAA........................................................................	18	1	6.00	0.00	6.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	6.00	2.00	2.00	2.00	0.00
..........................................................................................TAGTCGAGCCAATAAGTTCGG...............	21	1	6.00	0.00	1.00	5.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	6.00	5.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	6.00	0.00	0.00	6.00	0.00
..........................................................................................TATTCGAGCCAATAAGGTCGG...............	21	1	6.00	0.00	3.00	3.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	6.00	3.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	5.00	1.00	3.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	5.00	4.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTTGGT..............	22	1	5.00	3.00	1.00	1.00	0.00
..............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	5.00	0.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTGCGG...............	21	1	5.00	0.00	1.00	4.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	5.00	2.00	1.00	2.00	0.00
..........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	5.00	0.00	0.00	5.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	3.00	2.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	5.00	3.00	1.00	1.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	5.00	2.00	1.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	5.00	0.00	3.00	1.00	1.00
..........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	5.00	0.00	3.00	2.00	0.00
..........................................................................................TAATCGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	0.00	5.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA.....................................................................................	24	1	4.00	3.00	1.00	0.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	4.00	3.00	0.00	1.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	4.00	3.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCTATAAGTTCGG...............	21	1	4.00	3.00	1.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCG................	20	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCxATAAGTTCGG...............	20	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	4.00	3.00	1.00	0.00	0.00
....................................ATGTACCTAGTTGAGGAAAAC-----T-..............................................................	22	1	4.00	1.00	3.00	0.00	0.00
..........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	4.00	1.00	0.00	3.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	4.00	2.00	1.00	1.00	0.00
..........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	4.00	1.00	3.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	4.00	1.00	3.00	0.00	0.00
..........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	4.00	3.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	4.00	1.00	1.00	2.00	0.00
.................GTAACTTGTGTGGCTTCGA..........................................................................................	19	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAG................	20	1	3.00	1.00	0.00	2.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	3.00	2.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	3.00	2.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGGA..............	22	1	3.00	0.00	1.00	2.00	0.00
...................................................................................................CAATAAGTTCGGCCACGA.........	18	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	3.00	0.00	1.00	2.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	3.00	0.00	1.00	1.00	1.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCGTGCCAATAAGTTCGG...............	21	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCG................	20	1	3.00	2.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCxATAAGTTCG................	19	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCC................	20	1	3.00	1.00	0.00	2.00	0.00
..........................................................................................TATTAGAGCCAATAAGCTCGG...............	21	1	3.00	0.00	2.00	1.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCG................	19	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	3.00	2.00	0.00	0.00	1.00
..........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	3.00	2.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	3.00	1.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCG................	20	1	3.00	2.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	3.00	2.00	1.00	0.00	0.00
..........................................................................................TATCCGAGCCAATAAGTTCG................	20	1	3.00	2.00	0.00	1.00	0.00

droPer1

TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	1071.00	763.00	132.00	136.00	6.00	34.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	1020.00	882.00	49.00	59.00	8.00	22.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	394.00	336.00	9.00	39.00	3.00	7.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	260.00	164.00	31.00	26.00	0.00	39.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	60.00	33.00	1.00	0.00	0.00	26.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	53.00	16.00	20.00	6.00	1.00	10.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	51.00	44.00	0.00	2.00	1.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	50.00	22.00	2.00	4.00	1.00	21.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	25.00	23.00	1.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	21.00	1.00	11.00	0.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	16.00	7.00	3.00	4.00	0.00	2.00
................................................................CCGA-AATGGATTTTGTTACCTCTGG....................................	25	1	14.00	0.00	0.00	0.00	0.00	14.00
..........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	11.00	5.00	0.00	2.00	0.00	4.00
..................TAACTTGTGTGGCTTCGAATGTACC...................................................................................	25	1	10.00	2.00	0.00	0.00	0.00	8.00
........................................................C-----T-CCGA-AATGGATTTTGTTACCTCTG.....................................	26	1	9.00	0.00	0.00	0.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	8.00	7.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	7.00	0.00	0.00	0.00	0.00	7.00
.................GTAACTTGTGTGGCTTCGA..........................................................................................	19	1	6.00	3.00	1.00	0.00	0.00	2.00
..............................................................................................CGAGCCAATAAGTTCGGA..............	18	1	6.00	0.00	0.00	0.00	0.00	6.00
......................................................................ATGGATTTTGTTACCTCTGGTATTCGAGC...........................	29	1	6.00	0.00	0.00	0.00	0.00	6.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	6.00	3.00	1.00	0.00	0.00	2.00
......................................................................................CTGGTATTCGAGCCAATAAGTTCGGC..............	26	1	6.00	0.00	0.00	0.00	0.00	6.00
................................................................CCGA-AATGGATTTTGTTACCTCTGGTATT................................	29	1	5.00	0.00	0.00	0.00	0.00	5.00
.................GTAACTTGTGTGGCTTCGAATGTA.....................................................................................	24	1	5.00	5.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATG.......................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGT......................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCCAGCCAATAAGTTCGT...............	21	1	5.00	0.00	0.00	0.00	0.00	5.00
..........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	5.00	1.00	0.00	0.00	0.00	4.00
..........................................................................................TATTCGAxCCAATAAGTTCGGA..............	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.....................................TGTACCTAGTTGAGGAAAAC-----T-..............................................................	21	1	5.00	4.00	1.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	4.00	3.00	0.00	0.00	1.00	0.00
..................TAACTTGTGTGGCTTCGAATGTAC....................................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	4.00	2.00	1.00	1.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	4.00	0.00	1.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCAATAATTTCGGA..............	22	1	4.00	1.00	0.00	0.00	0.00	3.00
................................................................CCGA-AATGGATTTTGTTACCTCTGGT...................................	26	1	4.00	0.00	1.00	0.00	0.00	3.00
..................................GAATGTACCTAGTTGAGGAA........................................................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
..............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	4.00	0.00	4.00	0.00	0.00	0.00
......................................................AAC-----T-CCGA-AATGGATTTTGTTACCTCTG.....................................	28	1	4.00	0.00	0.00	0.00	0.00	4.00
................................................................CCGA-AATGGATTTTGTTACC.........................................	20	1	4.00	0.00	0.00	0.00	0.00	4.00
..........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	4.00	2.00	2.00	0.00	0.00	0.00
......................................................AAC-----T-CCGA-AATGGATTTTGTTACCTCTGG....................................	29	1	4.00	0.00	0.00	0.00	0.00	4.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	4.00	2.00	0.00	1.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	4.00	0.00	0.00	2.00	0.00	2.00
........................................................C-----T-CCGA-AATGGATTTTGTTACCTCTGGT...................................	28	1	4.00	0.00	0.00	0.00	0.00	4.00
..................TAACTTGTGTGGCTTCGAATGT......................................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
................................................................CCGA-AATGGATTTTTTTACCTC.......................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCAATAAGGTCGGT..............	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................GGAAAAC-----T-CCGA-AATGGAT..................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
...........................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	3.00	1.00	0.00	2.00	0.00	0.00
......................................................................ATGGATTTTGTTACCTCTGGTATTCGAG............................	28	1	3.00	0.00	0.00	0.00	0.00	3.00
...............................................................................GTTACCTCTGGTATTCGAGC...........................	20	1	3.00	0.00	3.00	0.00	0.00	0.00
....................................................................................................AATAAGTTCGGCCACGAAATCGCATT	26	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	3.00	1.00	1.00	1.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAA.........................................................................................	20	1	3.00	1.00	2.00	0.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	3.00	1.00	0.00	0.00	0.00	2.00
.....................................................................AATGGATTTTGTTACCTCT......................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	3.00	1.00	0.00	0.00	0.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	3.00	3.00	0.00	0.00	0.00	0.00
...................................................................................................CAATAAGTTCGGCCACGA.........	18	1	3.00	0.00	2.00	0.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	3.00	2.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGT...............	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.................................................................CGA-AATGGATTTTGTTACCTCTGGTATT................................	28	1	3.00	0.00	0.00	0.00	0.00	3.00
...................AACTTGTGTGGCTTCGAATGTAC....................................................................................	23	1	3.00	0.00	0.00	0.00	1.00	2.00

droWil1

TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	10030.00	5199.00	4639.00	160.00	32.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	5439.00	3794.00	1537.00	84.00	24.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	3904.00	3575.00	260.00	50.00	19.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1148.00	481.00	626.00	24.00	17.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	667.00	522.00	120.00	12.00	13.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	632.00	89.00	514.00	18.00	11.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	523.00	288.00	147.00	6.00	82.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	221.00	4.00	208.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	55.00	7.00	44.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	54.00	30.00	24.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	53.00	39.00	11.00	1.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	51.00	31.00	15.00	0.00	5.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	49.00	25.00	19.00	5.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	44.00	25.00	18.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	40.00	4.00	36.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	37.00	4.00	26.00	2.00	5.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	33.00	22.00	6.00	1.00	4.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	28.00	11.00	15.00	1.00	1.00
....................................ATGTACCTAGTTGAGGAAAA......................................................................	20	1	26.00	4.00	22.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	24.00	17.00	6.00	1.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	18.00	5.00	13.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	18.00	3.00	15.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	17.00	3.00	14.00	0.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	16.00	6.00	8.00	0.00	2.00
............................................................................TTTGTTACCTCTGGTATTCGAGC...........................	23	1	15.00	1.00	14.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	15.00	2.00	12.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	14.00	10.00	3.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	14.00	3.00	10.00	1.00	0.00
..........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	14.00	11.00	3.00	0.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	14.00	3.00	10.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGT...............	21	1	14.00	0.00	1.00	0.00	13.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	14.00	3.00	7.00	0.00	4.00
..........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	14.00	6.00	7.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGA..........................................................................................	19	1	13.00	2.00	10.00	1.00	0.00
...................................AATGTACCTAGTTGAGGAAAA......................................................................	21	1	13.00	3.00	10.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	13.00	8.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	13.00	10.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	13.00	6.00	7.00	0.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	12.00	12.00	0.00	0.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	12.00	4.00	8.00	0.00	0.00
...................................................................................................CAATAAGTTCGGCCACGA.........	18	1	12.00	0.00	12.00	0.00	0.00
..........................................................................................TATTCGAGCCAATGAGTTCGG...............	21	1	11.00	2.00	8.00	1.00	0.00
........................................................A-----TTCAAT-GTTGGATTTTGTTACCT........................................	24	1	11.00	1.00	0.00	0.00	10.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	11.00	6.00	3.00	0.00	2.00
..........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	11.00	6.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	11.00	3.00	8.00	0.00	0.00
......................................GTACCTAGTTGAGGAAAA......................................................................	18	1	11.00	0.00	11.00	0.00	0.00
..........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	10.00	3.00	7.00	0.00	0.00
..........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	10.00	2.00	7.00	1.00	0.00
.............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	10.00	0.00	10.00	0.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	10.00	9.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	10.00	7.00	3.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	10.00	1.00	0.00	0.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	10.00	1.00	9.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA.....................................................................................	24	1	9.00	1.00	8.00	0.00	0.00
..........................................................................................TCTTCGAGCCAATAAGTTCGG...............	21	1	9.00	2.00	7.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	9.00	3.00	5.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	9.00	5.00	3.00	1.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	9.00	3.00	5.00	0.00	1.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	9.00	7.00	2.00	0.00	0.00
........................GTGTGGCTTCGAATGTAC....................................................................................	18	1	9.00	0.00	7.00	0.00	2.00
..........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	9.00	5.00	4.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGCC.............	23	1	9.00	0.00	9.00	0.00	0.00
..........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	9.00	1.00	7.00	1.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	9.00	0.00	9.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	8.00	3.00	4.00	1.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	8.00	1.00	7.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	8.00	3.00	3.00	0.00	2.00
.................................................................AAT-GTTGGATTTTGTTACCT........................................	20	1	8.00	0.00	6.00	0.00	2.00
..........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	8.00	7.00	1.00	0.00	0.00
..................TAACTTGTGTGGCTTCGAATGTACC...................................................................................	25	1	8.00	3.00	2.00	0.00	3.00
..........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	8.00	3.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	7.00	5.00	2.00	0.00	0.00
.................GTAACTTGTGTGGCTTCG...........................................................................................	18	1	7.00	0.00	7.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	7.00	1.00	4.00	0.00	2.00
.................GTAACTTGTGTGGCTTCGAATGT......................................................................................	23	1	7.00	3.00	4.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACCT..................................................................................	27	1	7.00	0.00	6.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	7.00	1.00	5.00	1.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	7.00	5.00	2.00	0.00	0.00
..............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	7.00	0.00	7.00	0.00	0.00
....................................ATGTACCTAGTTGAGGAAAAA-----................................................................	21	1	7.00	1.00	6.00	0.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGT...............	21	1	7.00	2.00	1.00	0.00	4.00
........................GTGTGGCTTCGAATGTACCTAGTT..............................................................................	24	1	6.00	0.00	6.00	0.00	0.00
..........................................................................................TATTCGAACCAATAAGTTCGG...............	21	1	6.00	3.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	6.00	5.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCG................	20	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCG................	20	1	6.00	5.00	1.00	0.00	0.00
...................................AATGTACCTAGTTGAGGA.........................................................................	18	1	6.00	0.00	6.00	0.00	0.00
.....................................TGTACCTAGTTGAGGAAAAA-----................................................................	20	1	6.00	2.00	4.00	0.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCGGT..............	22	1	6.00	3.00	3.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAA.........................................................................................	20	1	6.00	1.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	6.00	3.00	3.00	0.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCG................	20	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	6.00	5.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTA...............	21	1	6.00	4.00	2.00	0.00	0.00
.....................CTTGTGTGGCTTCGAATGTACCT..................................................................................	23	1	5.00	0.00	4.00	0.00	1.00
..........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	5.00	2.00	2.00	1.00	0.00
..........................................................................................TATTCGAGCCCATAAGTTCG................	20	1	5.00	5.00	0.00	0.00	0.00
.......................TGTGTGGCTTCGAATGTACC...................................................................................	20	1	5.00	2.00	3.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	5.00	3.00	2.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATG.......................................................................................	22	1	5.00	3.00	1.00	1.00	0.00

droVir3

TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAACGA----ATTCAACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	10718.00	10133.00	68.00	222.00	294.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	9482.00	9113.00	64.00	172.00	132.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2627.00	2566.00	19.00	11.00	30.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1159.00	986.00	8.00	45.00	118.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	1033.00	949.00	4.00	14.00	65.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	799.00	423.00	1.00	2.00	369.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	476.00	272.00	3.00	3.00	195.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	339.00	236.00	3.00	29.00	69.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	213.00	194.00	2.00	3.00	14.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTC.............	23	1	162.00	23.00	0.00	0.00	137.00	2.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	108.00	103.00	2.00	0.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	82.00	81.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	80.00	30.00	1.00	1.00	47.00	1.00
.................GTAACTTGTGTGGCTT-GAATGTACC...................................................................................	25	1	34.00	27.00	0.00	6.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	30.00	28.00	0.00	1.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	26.00	23.00	0.00	2.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	23.00	17.00	0.00	6.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	22.00	22.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	22.00	17.00	0.00	0.00	5.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	21.00	12.00	1.00	0.00	8.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	21.00	0.00	0.00	0.00	20.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	20.00	18.00	0.00	0.00	2.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	19.00	2.00	0.00	0.00	17.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	19.00	12.00	0.00	0.00	7.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	19.00	8.00	0.00	1.00	9.00	1.00
..........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	19.00	19.00	0.00	0.00	0.00	0.00
...................................AATGTACCTGGTTGAGGAACGA----.................................................................	22	1	18.00	16.00	0.00	2.00	0.00	0.00
..............................CTT-GAATGTACCTGGTTGAGGAACGA----.................................................................	26	1	17.00	15.00	0.00	2.00	0.00	0.00
..........................................................................................TATTCGAGCCAAAAAGTTCGG...............	21	1	17.00	17.00	0.00	0.00	0.00	0.00
.........................................................................................GTATTCGAGCCAATAAGTTCG................	21	1	17.00	17.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	17.00	8.00	0.00	5.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	16.00	13.00	0.00	2.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGT...............	21	1	16.00	2.00	0.00	0.00	14.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	16.00	11.00	0.00	0.00	5.00	0.00
.................GTAACTTGTGTGGCTT-GAATGTAC....................................................................................	24	1	15.00	11.00	0.00	4.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	15.00	7.00	0.00	1.00	7.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	15.00	14.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTACGG...............	21	1	15.00	14.00	0.00	1.00	0.00	0.00
..........................................CTGGTTGAGGAACGA----ATTC.............................................................	19	1	15.00	6.00	0.00	9.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGATCGG...............	21	1	15.00	14.00	1.00	0.00	0.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	14.00	13.00	0.00	0.00	1.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	14.00	14.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTACGGT..............	22	1	14.00	14.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	14.00	11.00	0.00	0.00	3.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	14.00	14.00	0.00	0.00	0.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	13.00	11.00	0.00	2.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	13.00	13.00	0.00	0.00	0.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	12.00	10.00	0.00	2.00	0.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	12.00	12.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	12.00	6.00	1.00	5.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	11.00	11.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	10.00	9.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCCGGT..............	22	1	10.00	9.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	10.00	9.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAAAAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	10.00	10.00	0.00	0.00	0.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTTGGT..............	22	1	10.00	9.00	0.00	1.00	0.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	9.00	8.00	1.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGAC..............	22	1	9.00	1.00	0.00	0.00	8.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	9.00	9.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTCT.............	23	1	9.00	8.00	0.00	0.00	1.00	0.00
...................................AATGTACCTGGTTGAGGAAC.......................................................................	20	1	8.00	7.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGGTCGGT..............	22	1	8.00	5.00	0.00	2.00	1.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	8.00	7.00	0.00	1.00	0.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	8.00	8.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	8.00	6.00	0.00	0.00	2.00	0.00
..........................................................................................CATTCGAGCCAATAAGTTCGGT..............	22	1	8.00	6.00	0.00	2.00	0.00	0.00
..........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	7.00	5.00	0.00	0.00	2.00	0.00
........................................ACCTGGTTGAGGAACGA----ATTC.............................................................	21	1	7.00	3.00	0.00	4.00	0.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	7.00	7.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	7.00	2.00	0.00	1.00	4.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	7.00	7.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTT-TAATGTACC...................................................................................	25	1	7.00	0.00	0.00	4.00	3.00	0.00
..................TAACTTGTGTGGCTT-GAATGTAC....................................................................................	23	1	7.00	6.00	0.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	7.00	6.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGATCG................	20	1	7.00	5.00	2.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTT-GAATGT......................................................................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTACG................	20	1	7.00	7.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	7.00	4.00	0.00	2.00	1.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	6.00	5.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGT...............	21	1	6.00	0.00	0.00	0.00	5.00	1.00
..................TAACTTGTGTGGCTT-GAATGTACC...................................................................................	24	1	6.00	4.00	0.00	0.00	1.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	6.00	2.00	0.00	4.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCGT...............	21	1	6.00	0.00	0.00	0.00	6.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	6.00	5.00	0.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	6.00	4.00	0.00	2.00	0.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGT...............	21	1	6.00	6.00	0.00	0.00	0.00	0.00
.........................................................................................GTATTCGAGCCAATAAGTTCGG...............	22	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAACCAATAAGTTCGGT..............	22	1	6.00	4.00	0.00	1.00	1.00	0.00
..........................................................................................TATTCGAGCCxATAAGTTCGG...............	20	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCG................	20	1	6.00	5.00	0.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTG.............	23	1	6.00	2.00	0.00	1.00	3.00	0.00
..........................................................................................TATTCCAGCCAATAAGTTCGGT..............	22	1	6.00	4.00	0.00	0.00	2.00	0.00
.............................................................ATTCAACGTTTGGATTTTGTTGCCT........................................	25	1	6.00	0.00	0.00	2.00	4.00	0.00
..........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	6.00	4.00	1.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATGAGTTCGGT..............	22	1	6.00	6.00	0.00	0.00	0.00	0.00

droMoj3

TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCATT-GTTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	10047.00	9628.00	210.00	130.00	79.00
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	6866.00	6486.00	186.00	120.00	74.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2492.00	2385.00	67.00	40.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	1562.00	1513.00	28.00	11.00	10.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1368.00	1304.00	28.00	17.00	19.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	353.00	332.00	13.00	7.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	346.00	335.00	8.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	166.00	161.00	2.00	3.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	163.00	136.00	13.00	5.00	9.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	142.00	122.00	0.00	0.00	20.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	106.00	102.00	4.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	95.00	84.00	10.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	50.00	41.00	4.00	4.00	1.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	37.00	24.00	8.00	4.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	28.00	28.00	0.00	0.00	0.00
......................................GTACCTCGTCGAGCGAAAAGCGA.................................................................	23	1	27.00	27.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC....................................................................................	25	1	25.00	21.00	1.00	0.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	24.00	22.00	0.00	0.00	2.00
.................GTAACTTGTGTGGCTTCGAAT........................................................................................	21	1	24.00	24.00	0.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	18.00	18.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	17.00	17.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGA..........................................................................................	19	1	15.00	15.00	0.00	0.00	0.00
.............................................................ATTCATT-GTTGGATTTTGTTGCTCTTG.....................................	27	1	15.00	15.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	15.00	15.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	15.00	14.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	14.00	14.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	14.00	9.00	2.00	2.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	13.00	13.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	11.00	11.00	0.00	0.00	0.00
..........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA.....................................................................................	24	1	10.00	10.00	0.00	0.00	0.00
..........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00
........................GTGTGGCTTCGAATGTACCTCGTCGA............................................................................	26	1	10.00	9.00	0.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	10.00	7.00	2.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	10.00	7.00	1.00	1.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	10.00	8.00	2.00	0.00	0.00
....................................ATGTACCTCGTCGAGCGAAAAGCGA.................................................................	25	1	9.00	9.00	0.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	9.00	9.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	9.00	9.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	9.00	9.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAA.........................................................................................	20	1	9.00	8.00	0.00	0.00	1.00
..........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	9.00	9.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTC.............	23	1	9.00	9.00	0.00	0.00	0.00
...................................AATGTACCTCGTCGAGCGAAAAGCGA.................................................................	26	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	8.00	7.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGTCT.............	23	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	8.00	6.00	0.00	2.00	0.00
...........................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	8.00	6.00	1.00	0.00	1.00
..........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	8.00	3.00	0.00	4.00	1.00
..........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	7.00	1.00	0.00	4.00	2.00
..........................................................................................TATTCGAGCCAATAGGTTCGGT..............	22	1	7.00	6.00	1.00	0.00	0.00
..........................................................................................TATTCGGGCCAATAAGTTCGGT..............	22	1	7.00	6.00	1.00	0.00	0.00
.........................................................................................GTATTCGAGCCAATAAGTTCG................	21	1	7.00	7.00	0.00	0.00	0.00
..........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	7.00	7.00	0.00	0.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	7.00	7.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCAAATAAGTTCGGT..............	22	1	7.00	6.00	1.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAATTTCG................	20	1	7.00	6.00	0.00	1.00	0.00
..........................................................................................GATTCGAGCCAATAAGTTCGGT..............	22	1	7.00	7.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	7.00	6.00	0.00	0.00	1.00
.................GTAACTTGTGTGGCTTCGAATGT......................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
.............................................................ATTCATT-GTTGGATTTTGTTGCT.........................................	23	1	6.00	5.00	0.00	1.00	0.00
............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	6.00	5.00	0.00	1.00	0.00
..........................................................................................TATCCGAGCCAATAAGTTCGGT..............	22	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	6.00	5.00	1.00	0.00	0.00
.................................................................ATT-GTTGGATTTTGTTGCTCTTG.....................................	23	1	6.00	5.00	0.00	1.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	6.00	6.00	0.00	0.00	0.00
...................................................CGAAAAGCGAATTCATT-GTTGGA...................................................	23	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGCGCCAATAAGTTCGGT..............	22	1	5.00	2.00	0.00	3.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGATCCAATAAGTTCG................	20	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCxATAAGTTCGGT..............	21	1	5.00	5.00	0.00	0.00	0.00
........................GTGTGGCTTCGAATGTACCTCGTCG.............................................................................	25	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAACCAATAAGTTCGGT..............	22	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	5.00	3.00	1.00	1.00	0.00
.........................................CCTCGTCGAGCGAAAAGCGA.................................................................	20	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	5.00	3.00	0.00	2.00	0.00
..........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	4.00	2.00	0.00	0.00	2.00
..........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	4.00	1.00	2.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATG.......................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCTAATAAGTTCGGT..............	22	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	4.00	0.00	1.00	3.00	0.00
..........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	4.00	0.00	0.00	3.00	1.00
..........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	4.00	0.00	1.00	2.00	1.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGTC..............	22	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	4.00	3.00	0.00	1.00	0.00
....................................ATGTACCTCGTCGAGCGAAAAGCGAATT..............................................................	28	1	4.00	4.00	0.00	0.00	0.00
.....................................TGTACCTCGTCGAGCGAAAAGCGA.................................................................	24	1	4.00	4.00	0.00	0.00	0.00
.........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	4.00	4.00	0.00	0.00	0.00
.........................................................................................GTATTCGAGCCAATAAGTT..................	19	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	4.00	3.00	1.00	0.00	0.00
........................................ACCTCGTCGAGCGAAAAGCGA.................................................................	21	1	4.00	3.00	0.00	1.00	0.00

droGri2

TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------GTTGGATTTCCT------AGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCATT	Size	Hit Count	Total Norm	V109 Male body
..........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	1242.00	1242.00
..........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	409.00	409.00
..........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	252.00	252.00
..........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	156.00	156.00
..........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	50.00	50.00
..........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	32.00	32.00
.................GTAACTTGTGTGGCTTCGAATGTACC...................................................................................	26	1	23.00	23.00
..........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	21.00	21.00
..........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	19.00	19.00
.........................................................................................GTATTCGAGCCAATAAGTTCG................	21	1	19.00	19.00
..........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	19.00	19.00
...........................................TGGCTAAGGAAA--------------GTTGGATTTCCT------AGG....................................	27	1	14.00	14.00
..........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	12.00	12.00
..........................................................................................TATTCGAGCCAATAAGTGCGG...............	21	1	9.00	9.00
..........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	7.00	7.00
..........................................................................................TATTCGAGCCAATAAGTACGG...............	21	1	7.00	7.00
..........................................................................................TATTCGAGCCAATAAGTACG................	20	1	6.00	6.00
..........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	6.00	6.00
..........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	6.00	6.00
..........................................................................................TATTCGAGCCAATAAGTCCGGT..............	22	1	6.00	6.00
..........................................................................................TATTCGCGCCAATAAGTTCGG...............	21	1	5.00	5.00
..........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	5.00	5.00
..........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	5.00	5.00
..........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	4.00	4.00
..........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	4.00	4.00
..........................................................................................TATTCGAGCCAATAAGTT..................	18	1	4.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	4.00	4.00
..........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	3.00	3.00
..........................................................................................TATTCGTGCCAATAAGTTCGG...............	21	1	3.00	3.00
..........................................................................................GATTCGAGCCAATAAGTTCGG...............	21	1	3.00	3.00
..........................................................................................TATTCGCGCCAATAAGTTCGGA..............	22	1	3.00	3.00
..........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	3.00	3.00
..........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	3.00	3.00
..........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	3.00	3.00
..........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	3.00	3.00
..........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	3.00	3.00

Generated: 04/20/2012 at 05:21:32 EDT

dme-mir-314

chr3L:11766112-11766201 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup