dme-mir-314- 12- and 20-way alignments

dme-mir-314	chr3L:11766112-11766201 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11766181-11766201
   star strand at position 11766114-11766139
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:11766097-11766216 +	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAA-----ACTCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSim1	chr3L:11131600-11131719 +	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSec1	super_0:3951120-3951239 +	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droYak2	chr3L:11794902-11795021 +	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AACCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCAtt
droEre2	scaffold_4784:11743709-11743828 +	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAG-----AATCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droAna3	scaffold_13337:6019503-6019620 +	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATC-A--GT-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCAtt
dp4	chrXR_group8:4342117-4342235 -	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCAtt
droPer1	super_29:576219-576337 -	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCAtt
droWil1	scaffold_180949:2570151-2570270 -	TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATTCA-ATG-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droVir3	scaffold_13049:23988146-23988266 +	TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAAC----GAATTCA-ACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT
droMoj3	scaffold_6680:18619757-18619881 +	TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCA-TTG-TTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT
droGri2	scaffold_15110:9705224-9705329 -	TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------G-TTGGATTTCC------TAGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCAtt

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:11766097-11766216 +	NA	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAAAC-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSim1	chr3L:11131600-11131719 +	2	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droSec1	super_0:3951120-3951239 +	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAG-----TCCCGT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droYak2	chr3L:11794902-11795021 +	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----CCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEre2	scaffold_4784:11743709-11743828 +	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAGAA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEug1	scf7180000409711:3637506-3637625 +	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droBia1	scf7180000302334:214342-214460 +	2	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT--TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droTak1	scf7180000414445:437081-437200 -	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droEle1	scf7180000490993:2023315-2023433 -	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droRho1	scf7180000779160:76370-76488 -	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-A-----TCCCAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droFic1	scf7180000454113:2923978-2924097 -	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAGA-----TCCCAT-GTCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droKik1	scf7180000302391:1074943-1075062 -	1	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAGT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droAna3	scaffold_13337:6019503-6019620 +	2	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droBip1	scf7180000396518:82752-82869 +	2	TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----T-C-AG-TTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
dp4	chrXR_group8:4342117-4342235 -	1	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droPer1	super_29:576219-576337 -	1	TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAC-----T-CCGA-AATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCATT
droWil1	scaffold_180949:2570151-2570270 -	2	TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAAAA-----TTCAAT-GTTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT
droVir3	scaffold_13049:23988146-23988266 +	1	TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAACGA----ATTCAACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT
droMoj3	scaffold_6680:18619757-18619881 +	2	TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCATT-GTTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT
droGri2	scaffold_15110:9705224-9705329 -	2	TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------GTTGGATTTCCT------AGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCATT

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAACTTACCTAGTTGAGGAAA-----ACTCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT

Size

Hit Count

Total Norm

droSim1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1038.00	164.00	5.00	616.00	253.00
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	1003.00	553.00	4.00	301.00	145.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	555.00	189.00	1.00	279.00	86.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	368.00	10.00	5.00	200.00	153.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	348.00	17.00	2.00	85.00	244.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	250.00	85.00	2.00	90.00	73.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	177.00	1.00	0.00	140.00	36.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	162.00	21.00	2.00	135.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	75.00	1.00	0.00	65.00	9.00
..................TAACTTGTGTGGCTTCGAATGTACC....................................................................................	25	1	74.00	0.00	1.00	37.00	36.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCT........................................	24	1	58.00	0.00	0.00	25.00	33.00
...........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	52.00	0.00	0.00	36.00	16.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	38.00	6.00	1.00	17.00	14.00
...........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	37.00	0.00	1.00	18.00	18.00
...........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	36.00	0.00	0.00	14.00	22.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	31.00	2.00	0.00	27.00	2.00
...........................................................................................TATTCGACCCAATAAGTTCGGA..............	22	1	28.00	0.00	0.00	14.00	14.00
...............................................................CCC-GTG-TCGGATTTTGTTACCTCTGG....................................	26	1	24.00	0.00	0.00	3.00	21.00
...........................................................................................TATTCCAGCCAATAAGTTCGT...............	21	1	20.00	0.00	0.00	13.00	7.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	20.00	0.00	0.00	15.00	5.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	20.00	1.00	0.00	2.00	17.00
...............................................................CCC-GTG-TCGGATTTTGTTACCT........................................	22	1	19.00	0.00	0.00	5.00	14.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	16.00	0.00	0.00	15.00	1.00
....................................................................................................CAATAAGTTCGGCCACGA.........	18	1	14.00	4.00	0.00	6.00	4.00
...........................................................................................TATTCCAGCCAATAAGTTCGGA..............	22	1	14.00	0.00	0.00	4.00	10.00
...........................................................................................TATTCGAGCCAATAATTTCGT...............	21	1	14.00	0.00	0.00	1.00	13.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	14.00	1.00	0.00	7.00	6.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	14.00	13.00	0.00	1.00	0.00
...............................................................................................CGAGCCAATAAGTTCGGA..............	18	1	13.00	1.00	0.00	7.00	5.00
...........................................................................................TATTCGATCCAATAAGTTCGGC..............	22	1	13.00	0.00	0.00	5.00	8.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCTCTGGT...................................	29	1	12.00	1.00	0.00	7.00	4.00
...........................................................................................TATTCGAGCCAATAATTTCGGA..............	22	1	12.00	0.00	0.00	8.00	4.00
...............................................................CCC-GTG-TCGGATTTTGTTAC..........................................	20	1	12.00	1.00	0.00	6.00	5.00
.................................................................C-GTG-TCGGATTTTGTTACCTCTGG....................................	24	1	12.00	0.00	0.00	0.00	12.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	11.00	0.00	0.00	4.00	7.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	10.00	0.00	0.00	7.00	3.00
....................................................................TG-TCGGATTTTGTTACCTCTGG....................................	22	1	10.00	1.00	0.00	0.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	10.00	9.00	0.00	1.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGT...............	21	1	10.00	0.00	0.00	5.00	5.00
...........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	10.00	0.00	0.00	3.00	7.00
................CGTAACTTGTGTGGCTTCGAATGTACC....................................................................................	27	1	10.00	0.00	0.00	1.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	9.00	7.00	0.00	1.00	1.00
...........................................................................................TATTCGACCCAATAAGTTCGT...............	21	1	9.00	0.00	0.00	2.00	7.00
...........................................................................................TATTCxAGCCAATAAGTTCGGA..............	21	1	8.00	0.00	0.00	4.00	4.00
......................TTGTGTGGCTTCGAATGTACC....................................................................................	21	1	8.00	0.00	0.00	2.00	6.00
...........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	8.00	0.00	0.00	8.00	0.00
................................................................CC-GTG-TCGGATTTTGTTACCT........................................	21	1	8.00	0.00	0.00	1.00	7.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	8.00	2.00	0.00	5.00	1.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	7.00	7.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	7.00	1.00	0.00	6.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	7.00	0.00	0.00	6.00	1.00
...............................................................CCC-GTG-TCGGATTTTGTTACC.........................................	21	1	7.00	0.00	0.00	1.00	6.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	7.00	2.00	0.00	3.00	2.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCTCTGG....................................	28	1	7.00	1.00	0.00	2.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	6.00	1.00	0.00	2.00	3.00
...........................................................................................TATTCGAGCCAATAAGGTCGG...............	21	1	6.00	3.00	0.00	1.00	2.00
...........................................................................................TATTCxAGCCAATAAGTTCGT...............	20	1	6.00	0.00	0.00	3.00	3.00
.................GTAACTTGTGTGGCTTCGAATGTACCT...................................................................................	27	1	6.00	1.00	0.00	0.00	5.00
....................................ATGTACCTAGTTGAGGAAA-----A..................................................................	20	1	6.00	5.00	0.00	0.00	1.00
...........................................................................................TATTCGAxCCAATAAGTTCGGC..............	21	1	6.00	0.00	0.00	0.00	6.00
...........................................................................................TATTCGACCCAATAAGTTCGGG..............	22	1	6.00	0.00	0.00	3.00	3.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCTCTG.....................................	27	1	6.00	0.00	0.00	1.00	5.00
...........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	5.00	5.00	0.00	0.00	0.00
............................................................AGTCCC-GTG-TCGGATTTTGTTACCTC.......................................	26	1	5.00	0.00	0.00	0.00	5.00
...............................................................CCC-GTG-TCGGATTTTGTTACCTCTG.....................................	25	1	5.00	0.00	0.00	0.00	5.00
...........................................................................................TATTCGAGCCAATAAGTTCGAC..............	22	1	5.00	0.00	0.00	3.00	2.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCG........................................	24	1	5.00	0.00	0.00	2.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAC.............	23	1	5.00	0.00	0.00	2.00	3.00
............................................................................................ATTCGAGCCAATAAGTTCGGA..............	21	1	5.00	1.00	0.00	4.00	0.00
....................................................AAA-----AGTCCC-GTG-TCGGATT.................................................	19	1	5.00	0.00	0.00	1.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCC.............	23	1	5.00	1.00	0.00	0.00	4.00
...........................................................................................TATTCGACCCAATAAGTTCGGC..............	22	1	5.00	0.00	0.00	4.00	1.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACC.........................................	23	1	4.00	0.00	0.00	2.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	4.00	3.00	0.00	1.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGG..............	22	1	4.00	0.00	0.00	2.00	2.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCTC.......................................	25	1	4.00	0.00	0.00	2.00	2.00
...........................................................................................TATTCGAGTCAATAAGTTCGGA..............	22	1	4.00	2.00	0.00	2.00	0.00
...............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGG..............	22	1	4.00	0.00	0.00	2.00	2.00
.................TTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	4.00	0.00	0.00	1.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTC.............	23	1	4.00	0.00	0.00	4.00	0.00
...................AACTTGTGTGGCTTCGAATGTACC....................................................................................	24	1	4.00	1.00	0.00	2.00	1.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCC........................................	24	1	4.00	0.00	0.00	1.00	3.00
...........................................................................................TAxTCCAGCCAATAAGTTCGG...............	20	1	4.00	0.00	0.00	3.00	1.00
...........................................................................................TATTCGAGCCAATAACTTCGT...............	21	1	4.00	0.00	0.00	1.00	3.00
...........................................................................................TATTCGAGCCAATTAGTTCGGT..............	22	1	4.00	4.00	0.00	0.00	0.00
.................................................................C-GTG-TCGGATTTTGTTACC.........................................	19	1	4.00	0.00	0.00	0.00	4.00
..............................................TTGAGGAAA-----AGTCCC-GTG-TCGGATTTT...............................................	27	1	4.00	0.00	0.00	0.00	4.00
...............................................................CCC-GTG-TCGGATTTTGTTACCC........................................	22	1	3.00	0.00	0.00	1.00	2.00
.................................................................................................AGCCAATAAGTTCGGAAA............	18	1	3.00	0.00	0.00	0.00	3.00
.................GTAACTTGTGTGGCTTCGAATGTA......................................................................................	24	1	3.00	1.00	0.00	0.00	2.00
..................TAACTTGTGTGGCTTCGAATGTAAC....................................................................................	25	1	3.00	0.00	0.00	2.00	1.00
...........................................................................................TATTCxAGCCAATAAGTTCGGT..............	21	1	3.00	0.00	0.00	1.00	2.00
.................GTAACTTGTCTGGCTTCGAATGTACC....................................................................................	26	1	3.00	0.00	0.00	0.00	3.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	3.00	0.00	0.00	0.00	3.00
...........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	3.00	0.00	0.00	0.00	3.00
..................................GAATGTACCTAGTTGAGGAAA-----A..................................................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................CCC-GTG-TCGGATTTTGTTACCTC.......................................	23	1	3.00	0.00	0.00	0.00	3.00
................................................................CC-GTG-TCGGATTTTGTTACCTCTGG....................................	25	1	3.00	0.00	0.00	0.00	3.00
..........................................CTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATT.................................................	29	1	3.00	0.00	0.00	3.00	0.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	3.00	1.00	0.00	2.00	0.00

droSec1

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AGTCCC-GTG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	17573.00	11092.00	5410.00	1071.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	10216.00	7654.00	2025.00	537.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	4626.00	4173.00	179.00	274.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	3573.00	2124.00	1252.00	197.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	1040.00	337.00	623.00	80.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	558.00	467.00	65.00	26.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	417.00	315.00	88.00	14.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	355.00	90.00	262.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	255.00	186.00	56.00	13.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	149.00	127.00	15.00	7.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	142.00	84.00	50.00	8.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	134.00	78.00	50.00	6.00
...........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	123.00	22.00	100.00	1.00
....................................................................................................CAATAAGTTCGGCCACGA.........	18	1	118.00	1.00	116.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	109.00	70.00	39.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	94.00	92.00	1.00	1.00
....................................ATGTACCTAGTTGAGGAAA-----A..................................................................	20	1	93.00	23.00	68.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	66.00	65.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTTGGT..............	22	1	65.00	51.00	14.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	55.00	25.00	28.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTAG................	20	1	54.00	54.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	54.00	34.00	15.00	5.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	53.00	22.00	9.00	22.00
...........................................................................................TATTCGAGCCAATAAGTTGGG...............	21	1	52.00	51.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGA...........................................................................................	19	1	50.00	3.00	47.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	47.00	22.00	24.00	1.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	46.00	8.00	32.00	6.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	45.00	8.00	36.00	1.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	38.00	18.00	15.00	5.00
.................GTAACTTGTGTGGCTTCGAATG........................................................................................	22	1	37.00	25.00	9.00	3.00
......................................GTACCTAGTTGAGGAAA-----A..................................................................	18	1	37.00	0.00	37.00	0.00
...........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	35.00	5.00	28.00	2.00
...................................AATGTACCTAGTTGAGGAAA-----A..................................................................	21	1	35.00	6.00	28.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTGG................	20	1	34.00	32.00	2.00	0.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	34.00	10.00	23.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	30.00	6.00	24.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	30.00	23.00	6.00	1.00
.................GTAACTTGTGTGGCTTCGAATGT.......................................................................................	23	1	29.00	23.00	5.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	29.00	19.00	9.00	1.00
.............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	26.00	4.00	21.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTTG................	20	1	26.00	26.00	0.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	24.00	7.00	14.00	3.00
.................................................................................TTACCTCTGGTATTCGAGC...........................	19	1	23.00	0.00	23.00	0.00
...............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	23.00	4.00	18.00	1.00
.................GTAACTTGTGTGGCTTCGAA..........................................................................................	20	1	23.00	4.00	19.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	23.00	13.00	10.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA......................................................................................	24	1	22.00	12.00	8.00	2.00
...........................................................................................TATTCGAGCCxATAAGTTCGG...............	20	1	22.00	7.00	15.00	0.00
...........................................................................................TATTCGTGCCAATAAGTTCGG...............	21	1	22.00	4.00	17.00	1.00
...........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	21.00	16.00	5.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	21.00	13.00	8.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	20.00	12.00	6.00	2.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	20.00	15.00	4.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	20.00	12.00	7.00	1.00
...........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	19.00	3.00	16.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGGA..............	22	1	19.00	16.00	0.00	3.00
.............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	19.00	13.00	5.00	1.00
...........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	19.00	5.00	12.00	2.00
...........................................................................................TATTCGAGCTAATAAGTTCGG...............	21	1	19.00	9.00	10.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTGGGT..............	22	1	18.00	18.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTTGGA..............	22	1	18.00	7.00	10.00	1.00
....................................ATGTACCTAGTTGAGGAAA-----AGT................................................................	22	1	18.00	2.00	16.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	17.00	10.00	7.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	17.00	7.00	5.00	5.00
............................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	16.00	13.00	3.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	16.00	6.00	9.00	1.00
...........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	16.00	11.00	4.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	16.00	11.00	2.00	3.00
..................TAACTTGTGTGGCTTCGAATGTACC....................................................................................	25	1	16.00	12.00	3.00	1.00
...........................................................................................TATTCGAGCTAATAAGTTCGGT..............	22	1	15.00	8.00	6.00	1.00
...........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	15.00	9.00	4.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	15.00	10.00	1.00	4.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	15.00	8.00	4.00	3.00
...........................................................................................TATCCGAGCCAATAAGTTCGGT..............	22	1	15.00	12.00	2.00	1.00
...........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	14.00	5.00	7.00	2.00
...........................................................................................TATTCGAGTCAATAAGTTCGGT..............	22	1	14.00	1.00	13.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	14.00	5.00	8.00	1.00
...........................................................................................TATTCGAGCCxATAAGTTCGGT..............	21	1	13.00	5.00	8.00	0.00
..............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	13.00	1.00	12.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	13.00	10.00	3.00	0.00
...........................................................................ATTTTGTTACCTCTGGTATTCGAGC...........................	25	1	13.00	0.00	13.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	13.00	5.00	5.00	3.00
........................................ACCTAGTTGAGGAAA-----AGT................................................................	18	1	13.00	0.00	12.00	1.00
.....................................TGTACCTAGTTGAGGAAA-----A..................................................................	19	1	13.00	0.00	13.00	0.00
...........................................................................................GATTCGAGCCAATAAGTTCGG...............	21	1	13.00	2.00	11.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	12.00	10.00	2.00	0.00
.............................................................................TTTGTTACCTCTGGTATTCGAGC...........................	23	1	12.00	0.00	12.00	0.00
...........................................................................................TCTTCGAGCCAATAAGTTCGGT..............	22	1	12.00	8.00	3.00	1.00
...........................................................................................TCTTCGAGCCAATAAGTTCGG...............	21	1	12.00	6.00	5.00	1.00
...............................................................................TGTTACCTCTGGTATTCGAGCC..........................	22	1	12.00	3.00	8.00	1.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCTCTG.....................................	27	1	12.00	0.00	11.00	1.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	12.00	2.00	9.00	1.00
...........................................................................................TATTCGAACCAATAAGTTCGG...............	21	1	11.00	5.00	5.00	1.00
...................AACTTGTGTGGCTTCGAA..........................................................................................	18	1	11.00	0.00	11.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGGA..............	20	1	11.00	6.00	4.00	1.00
...........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	11.00	8.00	3.00	0.00
...........................................................................................TATTGGAGCCAATAAGTTCGG...............	21	1	11.00	10.00	1.00	0.00
.............................................................GTCCC-GTG-TCGGATTTTGTTACCT........................................	24	1	10.00	0.00	10.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	10.00	4.00	4.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTGGGA..............	22	1	10.00	10.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	10.00	8.00	2.00	0.00

droYak2

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AACCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCAtt	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	6511.00	368.00	182.00	5483.00	467.00	11.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	3328.00	150.00	80.00	2869.00	224.00	5.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2164.00	11.00	44.00	2016.00	87.00	6.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	790.00	83.00	20.00	636.00	48.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	215.00	9.00	2.00	192.00	12.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	194.00	0.00	5.00	155.00	19.00	15.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	166.00	40.00	6.00	92.00	21.00	7.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	47.00	1.00	1.00	39.00	5.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	44.00	0.00	0.00	40.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	42.00	0.00	3.00	34.00	5.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	35.00	0.00	0.00	23.00	12.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	29.00	1.00	0.00	24.00	4.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	26.00	2.00	0.00	18.00	6.00	0.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	24.00	4.00	3.00	6.00	10.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	22.00	4.00	1.00	16.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	18.00	3.00	1.00	9.00	0.00	5.00
............................................................AACCCC-ATG-TCGGATTTTGTTACCT........................................	25	1	16.00	0.00	0.00	2.00	0.00	14.00
............................................................AACCCC-ATG-TCGGATTTTGTTACCTCTG.....................................	28	1	16.00	0.00	0.00	1.00	0.00	15.00
...........................................................................................TATTCGAGCCACTAAGTTCGG...............	21	1	15.00	1.00	2.00	2.00	10.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	14.00	0.00	0.00	13.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	13.00	0.00	1.00	8.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	13.00	2.00	3.00	6.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	12.00	0.00	0.00	9.00	3.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	11.00	1.00	0.00	6.00	4.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	10.00	0.00	0.00	10.00	0.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	10.00	0.00	0.00	5.00	5.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCG................	20	1	9.00	1.00	0.00	7.00	1.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	9.00	1.00	0.00	8.00	0.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	9.00	0.00	0.00	8.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	9.00	0.00	0.00	8.00	1.00	0.00
....................................ATGTACCTAGTTGAGGAAA-----A..................................................................	20	1	9.00	2.00	0.00	7.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	9.00	1.00	0.00	8.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	8.00	0.00	1.00	4.00	3.00	0.00
....................................ATGTACCTAGTTGAGGAAA-----...................................................................	19	1	8.00	2.00	1.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	8.00	1.00	0.00	6.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGA...........................................................................................	19	1	7.00	2.00	0.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCG................	20	1	7.00	0.00	0.00	5.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	7.00	0.00	0.00	6.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	7.00	0.00	1.00	3.00	1.00	2.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	7.00	0.00	0.00	7.00	0.00	0.00
...........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	7.00	2.00	1.00	1.00	3.00	0.00
..............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	7.00	3.00	0.00	4.00	0.00	0.00
...........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	7.00	0.00	0.00	7.00	0.00	0.00
...........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	7.00	0.00	1.00	5.00	1.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	6.00	0.00	0.00	6.00	0.00	0.00
...........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	6.00	2.00	1.00	1.00	2.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	6.00	1.00	0.00	5.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	6.00	0.00	0.00	4.00	0.00	2.00
....................................................................................................CAATAAGTTCGGCCACGA.........	18	1	6.00	3.00	0.00	2.00	0.00	1.00
...........................................................................................TATTCGAGCCTATAAGTTCGG...............	21	1	6.00	2.00	0.00	3.00	1.00	0.00
...............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	6.00	4.00	0.00	2.00	0.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	6.00	0.00	1.00	4.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	6.00	1.00	0.00	5.00	0.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	6.00	1.00	0.00	4.00	1.00	0.00
.............................................................ACCCC-ATG-TCGGATTTTGTTACC.........................................	23	1	5.00	0.00	0.00	1.00	0.00	4.00
...........................................................................................TATTCGAGCCAATGAGTTCGGT..............	22	1	5.00	0.00	1.00	4.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	5.00	0.00	0.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	5.00	1.00	1.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	5.00	0.00	1.00	4.00	0.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	5.00	0.00	0.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	5.00	0.00	1.00	2.00	2.00	0.00
............................................................AACCCC-ATG-TCGGATTTTGTTACCTCTGG....................................	29	1	5.00	0.00	0.00	1.00	0.00	4.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	5.00	0.00	3.00	2.00	0.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	5.00	0.00	0.00	4.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	5.00	1.00	0.00	1.00	0.00	3.00
...........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	5.00	0.00	0.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	5.00	0.00	0.00	5.00	0.00	0.00
.................................CGAATGTACCTAGTTGAGGAAA-----...................................................................	22	1	5.00	0.00	0.00	5.00	0.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	5.00	1.00	0.00	4.00	0.00	0.00
...........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	5.00	1.00	0.00	4.00	0.00	0.00
...........................................TAGTTGAGGAAA-----AACCCC-ATG-TCGGAT..................................................	27	1	4.00	0.00	0.00	2.00	0.00	2.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	4.00	0.00	1.00	3.00	0.00	0.00
...........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	2.00	2.00	0.00
...........................................................................................TATTCGAACCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	4.00	0.00	0.00
...............................................................................TGTTACCTCTGGTATTCGAGCC..........................	22	1	4.00	1.00	0.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATGAGTTCGG...............	21	1	4.00	0.00	2.00	1.00	1.00	0.00
...................................AATGTACCTAGTTGAGGAAA-----...................................................................	20	1	4.00	3.00	0.00	1.00	0.00	0.00
...........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	4.00	1.00	1.00	0.00	2.00	0.00
................................................................CC-ATG-TCGGATTTTGTTACCT........................................	21	1	4.00	0.00	0.00	2.00	0.00	2.00
..........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	4.00	1.00	0.00	3.00	0.00	0.00
...........................................................................................TATTCGCGCCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	2.00	2.00	0.00
...........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	4.00	0.00	1.00	1.00	2.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	4.00	0.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	4.00	0.00	0.00	4.00	0.00	0.00
...........................................................................................TATTCGAACCAATAAGTTCGGT..............	22	1	4.00	0.00	0.00	3.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	4.00	1.00	0.00	3.00	0.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGGA..............	20	1	4.00	0.00	0.00	4.00	0.00	0.00
...........................................................................................TATTCGGGCCAATAAGTTCG................	20	1	4.00	0.00	0.00	4.00	0.00	0.00
...........................................................................................TCTTCGAGCCAATAAGTTCGG...............	21	1	3.00	0.00	1.00	2.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	3.00	0.00	0.00	2.00	1.00	0.00
...........................................................................................TAATCGAGCCAATAAGTTCGG...............	21	1	3.00	1.00	0.00	1.00	1.00	0.00
.................................................................................TTACCTCTGGTATTCGAGCC..........................	20	1	3.00	0.00	0.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGT...............	21	1	3.00	0.00	0.00	1.00	2.00	0.00
...........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	3.00	0.00	0.00	2.00	0.00	1.00
.................GTAACTTGTGTGGCTTCGAATGT.......................................................................................	23	1	3.00	0.00	0.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGGTCGG...............	21	1	3.00	1.00	0.00	1.00	1.00	0.00
............................................................................TTTTGTTACCTCTGGTATTCGAGC...........................	24	1	3.00	1.00	0.00	1.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	3.00	1.00	0.00	2.00	0.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCGGT..............	22	1	3.00	0.00	0.00	3.00	0.00	0.00
................................................................................GTTACCTCTGGTATTCGAGCCA.........................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
.....................CTTGTGTGGCTTCGAATGTACC....................................................................................	22	1	3.00	2.00	0.00	1.00	0.00	0.00

droEre2

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAG-----AATCCC-ATG-TCGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	2878.00	368.00	742.00	172.00	1596.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	1294.00	98.00	274.00	222.00	700.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	622.00	5.00	120.00	11.00	486.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	611.00	102.00	106.00	45.00	358.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	195.00	47.00	15.00	29.00	104.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	77.00	4.00	3.00	2.00	68.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	76.00	7.00	31.00	3.00	35.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	61.00	3.00	11.00	14.00	33.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	56.00	2.00	0.00	5.00	49.00
....................................ATGTACCTAGTTGAGGAAG-----A..................................................................	20	1	34.00	11.00	1.00	0.00	22.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	31.00	3.00	6.00	1.00	21.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	31.00	9.00	7.00	2.00	13.00
....................................................................................................CAATAAGTTCGGCCACGA.........	18	1	28.00	0.00	0.00	0.00	28.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	26.00	9.00	5.00	1.00	11.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	23.00	5.00	0.00	0.00	18.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	23.00	9.00	1.00	0.00	13.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	19.00	1.00	2.00	0.00	16.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	19.00	1.00	3.00	0.00	15.00
...........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	16.00	0.00	0.00	0.00	16.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	16.00	0.00	7.00	3.00	6.00
...........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	16.00	0.00	0.00	0.00	16.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	14.00	2.00	2.00	2.00	8.00
......................................GTACCTAGTTGAGGAAG-----A..................................................................	18	1	13.00	4.00	0.00	0.00	9.00
...........................................................................................TATTCGAGACAATAAGTTCGGT..............	22	1	13.00	0.00	1.00	1.00	11.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	12.00	0.00	0.00	0.00	12.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	12.00	2.00	8.00	0.00	2.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	12.00	1.00	2.00	1.00	8.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	11.00	1.00	0.00	1.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	11.00	7.00	1.00	1.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	10.00	0.00	1.00	4.00	5.00
...........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	10.00	1.00	0.00	0.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	10.00	0.00	2.00	0.00	8.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	9.00	3.00	3.00	1.00	2.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	8.00	1.00	1.00	6.00	0.00
...........................................................................................TATTCGAGCTAATAAGTTCGG...............	21	1	8.00	0.00	5.00	0.00	3.00
...........................................................................................TATTCGAGCCACTAAGTTCGG...............	21	1	8.00	0.00	7.00	0.00	1.00
...........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	8.00	2.00	0.00	5.00	1.00
.................GTAACTTGTGTGGCTTCGA...........................................................................................	19	1	7.00	5.00	0.00	0.00	2.00
.............................................................................TTTGTTACCTCTGGTATTCGAGC...........................	23	1	7.00	4.00	0.00	0.00	3.00
...........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	7.00	0.00	0.00	0.00	7.00
...........................................................................................TATTCGAGCCAATAAGTTCTGA..............	22	1	7.00	2.00	2.00	0.00	3.00
...........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	7.00	0.00	0.00	2.00	5.00
...........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	7.00	0.00	0.00	1.00	6.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	7.00	2.00	5.00	0.00	0.00
............................................................................TTTTGTTACCTCTGGTATTCGAGC...........................	24	1	6.00	3.00	0.00	0.00	3.00
..................................GAATGTACCTAGTTGAGGAAG-----A..................................................................	22	1	6.00	2.00	0.00	0.00	4.00
.............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	6.00	0.00	1.00	2.00	3.00
...........................................................................................TATTCGAGCAAATAAGTTCG................	20	1	6.00	0.00	0.00	0.00	6.00
.................GTAACTTGTGTGGCTTxGAATGTACC....................................................................................	25	1	6.00	0.00	0.00	6.00	0.00
..............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	6.00	4.00	0.00	0.00	2.00
...........................................................................................TAGTCGAGCCAATAAGTTCGG...............	21	1	6.00	1.00	4.00	0.00	1.00
...................AACTTGTGTGGCTTCGAA..........................................................................................	18	1	6.00	4.00	0.00	0.00	2.00
...........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	6.00	1.00	3.00	0.00	2.00
...............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	6.00	3.00	1.00	0.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	6.00	0.00	3.00	0.00	3.00
...........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	6.00	0.00	5.00	1.00	0.00
...................................AATGTACCTAGTTGAGGAAG-----A..................................................................	21	1	5.00	2.00	0.00	0.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	5.00	2.00	1.00	1.00	1.00
............................................................................TTTTGTTGCCTTTGGTATTCGAGCCA.........................	26	1	5.00	0.00	0.00	5.00	0.00
...........................................................................................TAATCGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	1.00	0.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	5.00	3.00	0.00	2.00	0.00
...........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	0.00	0.00	5.00
...........................................................................................TATTCTAGCCAATAAGTTCGGC..............	22	1	5.00	0.00	0.00	1.00	4.00
.............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	5.00	1.00	0.00	1.00	3.00
...........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	5.00	0.00	0.00	1.00	4.00
...........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	5.00	0.00	3.00	1.00	1.00
...........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	5.00	1.00	2.00	0.00	2.00
...............................................................................................CGAGCCAATAAGTTCGGA..............	18	1	5.00	0.00	0.00	1.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	5.00	1.00	0.00	1.00	3.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	2.00	0.00	3.00
................................................................................GTTACCTCTGGTATTCGAGC...........................	20	1	5.00	5.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	5.00	2.00	0.00	0.00	3.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	5.00	1.00	2.00	0.00	2.00
...........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	4.00	0.00	2.00	0.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	4.00	1.00	1.00	1.00	1.00
.................GTAACTTGTGTGGCTTxGAATGTAC.....................................................................................	24	1	4.00	0.00	0.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGGTCGG...............	21	1	4.00	2.00	0.00	2.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	4.00	0.00	0.00	0.00	4.00
...........................................................................................TATTCGAGCCAATAAGGTCGGT..............	22	1	4.00	1.00	1.00	2.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	4.00	0.00	2.00	0.00	2.00
..............................CTTCGAATGTACCTAGTTGAGGAAG-----A..................................................................	26	1	4.00	0.00	0.00	0.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	4.00	2.00	0.00	0.00	2.00
.................GTAACTTGTGTGGCTTxTAATGTAC.....................................................................................	24	1	4.00	0.00	0.00	4.00	0.00
.................GTAACTTGTGTGGCTTxTAATGTACC....................................................................................	25	1	4.00	0.00	0.00	4.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	4.00	1.00	0.00	0.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCTGC..............	22	1	4.00	2.00	0.00	1.00	1.00
..................TAACTTGTGTGGCTTCGAATGTACC....................................................................................	25	1	4.00	1.00	1.00	0.00	2.00
.............................................................ATCCC-ATG-TCGGATTTTGTTACCTCTGGT...................................	29	1	3.00	1.00	1.00	0.00	1.00
.......................TGTGTGGCTTCGAATGTACC....................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
.................GTAACTTGTGTGGCTTCG............................................................................................	18	1	3.00	1.00	0.00	0.00	2.00
...........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	3.00	0.00	2.00	0.00	1.00
.................................................................................TTACCTCTGGTATTCGAGC...........................	19	1	3.00	2.00	0.00	0.00	1.00
...........................................................................................TATTCGGGCCAATAAGTTCGGT..............	22	1	3.00	1.00	0.00	0.00	2.00
...........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	3.00	0.00	1.00	0.00	2.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	3.00	3.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAG................	20	1	3.00	0.00	0.00	0.00	3.00
.................................TGAATGTACCTGGTTGAGG...........................................................................	19	1	3.00	0.00	0.00	3.00	0.00
...........................................................................................TATTCGAGCCAATGAGTTCGG...............	21	1	3.00	1.00	1.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	3.00	0.00	0.00	0.00	3.00
........................GTGTGGCTTxGAATGTACCTGGT................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCGGA..............	22	1	3.00	1.00	1.00	0.00	1.00

droAna3

TGGCCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATC-A--GT-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCAtt	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	11841.00	10174.00	473.00	1155.00	39.00
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	8788.00	7544.00	360.00	838.00	46.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	3789.00	3338.00	233.00	212.00	6.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	2159.00	1895.00	114.00	147.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1671.00	1383.00	100.00	176.00	12.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	625.00	537.00	21.00	65.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	269.00	181.00	26.00	49.00	13.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	209.00	174.00	8.00	27.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	182.00	152.00	15.00	13.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGAT..............	22	1	157.00	149.00	7.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGCT..............	22	1	93.00	87.00	2.00	4.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	93.00	87.00	3.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	91.00	82.00	4.00	5.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	77.00	52.00	15.00	7.00	3.00
...........................................................................................TATTCGAGACAATAAGTTCGGT..............	22	1	67.00	62.00	4.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	61.00	52.00	5.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	60.00	44.00	3.00	13.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	58.00	56.00	0.00	2.00	0.00
...........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	52.00	45.00	4.00	3.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	46.00	19.00	23.00	3.00	1.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	46.00	39.00	7.00	0.00	0.00
...........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	40.00	35.00	0.00	5.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	39.00	37.00	1.00	1.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	39.00	32.00	5.00	2.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	35.00	29.00	5.00	1.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	35.00	34.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	35.00	33.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCATTAAGTTCGGT..............	22	1	33.00	31.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	32.00	32.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCGGT..............	22	1	31.00	31.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	31.00	24.00	1.00	6.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	30.00	26.00	0.00	3.00	1.00
...........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	30.00	25.00	2.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGGT..............	22	1	29.00	27.00	0.00	1.00	1.00
...........................................................................................TATTCGAGCCACTAAGTTCGG...............	21	1	29.00	27.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	29.00	14.00	1.00	14.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCG................	20	1	26.00	26.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAAGAAGTTCGGT..............	22	1	26.00	25.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	24.00	23.00	0.00	0.00	1.00
...........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	23.00	10.00	3.00	10.00	0.00
...........................................................................................TATTCGAGACAATAAGTTCG................	20	1	23.00	22.00	1.00	0.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	22.00	20.00	1.00	1.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	21.00	15.00	1.00	5.00	0.00
..........................................................................................GTATTCGAGCCAATAAGTTCGGT..............	23	1	21.00	17.00	3.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	21.00	20.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	21.00	14.00	4.00	3.00	0.00
...........................................................................................TATTCGAGCCATTAAGTTCGG...............	21	1	20.00	18.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	19.00	16.00	0.00	3.00	0.00
...........................................................................................TATACGAGCCAATAAGTTCGGT..............	22	1	18.00	17.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	18.00	13.00	2.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	17.00	11.00	0.00	4.00	2.00
...........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	17.00	11.00	1.00	5.00	0.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	16.00	8.00	2.00	3.00	3.00
.............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	16.00	13.00	1.00	1.00	1.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	16.00	13.00	0.00	3.00	0.00
...........................................................................................TATTCGAGCCAAAAAGTTCGGT..............	22	1	16.00	16.00	0.00	0.00	0.00
...........................................................................................GATTCGAGCCAATAAGTTCGG...............	21	1	16.00	9.00	2.00	5.00	0.00
...........................................................................................TATTCGAGCCAATGAGTTCGGT..............	22	1	16.00	15.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCTATAAGTTCGGT..............	22	1	15.00	12.00	0.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAAATTCGGT..............	22	1	15.00	14.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAAGAAGTTCGG...............	21	1	15.00	15.00	0.00	0.00	0.00
...........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	15.00	0.00	4.00	11.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	15.00	12.00	2.00	1.00	0.00
...........................................................................................TATTCGAGTCAATAAGTTCGGT..............	22	1	14.00	10.00	2.00	2.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	14.00	12.00	2.00	0.00	0.00
...........................................................................................TATTCGAGCCAAAAAGTTCGG...............	21	1	14.00	14.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	14.00	12.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCG................	20	1	14.00	13.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	14.00	11.00	1.00	2.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	14.00	9.00	0.00	5.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGAA..............	22	1	14.00	11.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	14.00	11.00	1.00	2.00	0.00
...........................................................................................TATACGAGCCAATAAGTTCGG...............	21	1	13.00	13.00	0.00	0.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	13.00	11.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCG................	20	1	13.00	12.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAGGTTCGGT..............	22	1	12.00	10.00	1.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGCA..............	22	1	12.00	10.00	2.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGT...............	21	1	12.00	10.00	2.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	12.00	11.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	12.00	9.00	0.00	3.00	0.00
...........................................................................................GATTCGAGCCAATAAGTTCGGT..............	22	1	12.00	10.00	0.00	2.00	0.00
...........................................................................................TCTTCGAGCCAATAAGTTCGGT..............	22	1	12.00	11.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	11.00	5.00	0.00	6.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	11.00	10.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	11.00	4.00	0.00	6.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	11.00	6.00	0.00	5.00	0.00
...........................................................................................TATTCGAGCAAATAAGTTCGGT..............	22	1	11.00	8.00	2.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCG................	20	1	11.00	11.00	0.00	0.00	0.00
..................TAACTTGTGTGGCTTCGAATGTACC....................................................................................	25	1	11.00	9.00	1.00	1.00	0.00
...........................................................................................TATTCGGGCCAATAAGTTCGGT..............	22	1	10.00	8.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	10.00	9.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	10.00	8.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	10.00	7.00	1.00	2.00	0.00
...........................................................................................TGTTCGAGCCAATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCG................	20	1	10.00	10.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	10.00	7.00	2.00	0.00	1.00
...........................................................................................TATCCGAGCCAATAAGTTCGGT..............	22	1	10.00	7.00	0.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAAGTGCGG...............	21	1	10.00	0.00	0.00	10.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCG................	20	1	9.00	9.00	0.00	0.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	9.00	8.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGGA..............	22	1	9.00	9.00	0.00	0.00	0.00

dp4

TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCAtt	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	5749.00	3951.00	565.00	1225.00	8.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	2908.00	2089.00	198.00	606.00	15.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2051.00	1798.00	17.00	234.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	600.00	377.00	79.00	135.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	234.00	97.00	89.00	41.00	7.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	154.00	132.00	4.00	14.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	114.00	70.00	5.00	32.00	7.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	65.00	53.00	2.00	9.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	34.00	22.00	3.00	9.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	31.00	19.00	5.00	7.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	28.00	5.00	18.00	3.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	19.00	8.00	1.00	9.00	1.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	19.00	7.00	12.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	12.00	5.00	3.00	4.00	0.00
..................TAACTTGTGTGGCTTCGAATGTACC....................................................................................	25	1	12.00	5.00	4.00	0.00	3.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	11.00	3.00	3.00	5.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	10.00	4.00	4.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	10.00	7.00	1.00	1.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	9.00	5.00	1.00	2.00	1.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	9.00	5.00	1.00	3.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	8.00	2.00	2.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	8.00	7.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	8.00	3.00	1.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	8.00	8.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	8.00	3.00	2.00	1.00	2.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	8.00	3.00	3.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	8.00	6.00	1.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	8.00	8.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	7.00	2.00	1.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGATCGG...............	21	1	7.00	1.00	1.00	5.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	7.00	2.00	1.00	4.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	7.00	5.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	6.00	5.00	0.00	1.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	6.00	5.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	6.00	2.00	1.00	3.00	0.00
...........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	6.00	1.00	5.00	0.00	0.00
..............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	6.00	2.00	4.00	0.00	0.00
...........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	6.00	4.00	0.00	2.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	6.00	5.00	0.00	1.00	0.00
....................................ATGTACCTAGTTGAGGAA.........................................................................	18	1	6.00	0.00	6.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	6.00	2.00	2.00	2.00	0.00
...........................................................................................TAGTCGAGCCAATAAGTTCGG...............	21	1	6.00	0.00	1.00	5.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	6.00	5.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	6.00	0.00	0.00	6.00	0.00
...........................................................................................TATTCGAGCCAATAAGGTCGG...............	21	1	6.00	0.00	3.00	3.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	6.00	3.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCA.............	23	1	5.00	1.00	3.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	5.00	4.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTTGGT..............	22	1	5.00	3.00	1.00	1.00	0.00
...............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	5.00	0.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTGCGG...............	21	1	5.00	0.00	1.00	4.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	5.00	2.00	1.00	2.00	0.00
...........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	5.00	0.00	0.00	5.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	3.00	2.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	5.00	3.00	1.00	1.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGG...............	21	1	5.00	2.00	1.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	5.00	0.00	3.00	1.00	1.00
...........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCACTAAGTTCGGT..............	22	1	5.00	0.00	3.00	2.00	0.00
...........................................................................................TAATCGAGCCAATAAGTTCGG...............	21	1	5.00	0.00	0.00	5.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA......................................................................................	24	1	4.00	3.00	1.00	0.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	4.00	3.00	0.00	1.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	4.00	3.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCTATAAGTTCGG...............	21	1	4.00	3.00	1.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCG................	20	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCxATAAGTTCGG...............	20	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	4.00	3.00	1.00	0.00	0.00
....................................ATGTACCTAGTTGAGGAAA-----ACT................................................................	22	1	4.00	1.00	3.00	0.00	0.00
...........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	4.00	1.00	0.00	3.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	4.00	2.00	1.00	1.00	0.00
...........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	4.00	1.00	3.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	4.00	1.00	3.00	0.00	0.00
...........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	4.00	3.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	4.00	1.00	1.00	2.00	0.00
.................GTAACTTGTGTGGCTTCGA...........................................................................................	19	1	3.00	0.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAG................	20	1	3.00	1.00	0.00	2.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	3.00	2.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	3.00	2.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGGA..............	22	1	3.00	0.00	1.00	2.00	0.00
....................................................................................................CAATAAGTTCGGCCACGA.........	18	1	3.00	0.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	3.00	0.00	1.00	2.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	3.00	3.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	3.00	0.00	1.00	1.00	1.00
...........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	3.00	3.00	0.00	0.00	0.00
...........................................................................................TATTCGTGCCAATAAGTTCGG...............	21	1	3.00	3.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCG................	20	1	3.00	2.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCxATAAGTTCG................	19	1	3.00	3.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	3.00	3.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCC................	20	1	3.00	1.00	0.00	2.00	0.00
...........................................................................................TATTAGAGCCAATAAGCTCGG...............	21	1	3.00	0.00	2.00	1.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCG................	19	1	3.00	3.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	3.00	2.00	0.00	0.00	1.00
...........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	3.00	2.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	3.00	1.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCG................	20	1	3.00	2.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	3.00	2.00	1.00	0.00	0.00
...........................................................................................TATCCGAGCCAATAAGTTCG................	20	1	3.00	2.00	0.00	1.00	0.00

droPer1

TGGTCCGCACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAAATCGCAtt	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	1071.00	763.00	132.00	136.00	6.00	34.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	1020.00	882.00	49.00	59.00	8.00	22.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	394.00	336.00	9.00	39.00	3.00	7.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	260.00	164.00	31.00	26.00	0.00	39.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	60.00	33.00	1.00	0.00	0.00	26.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	53.00	16.00	20.00	6.00	1.00	10.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	51.00	44.00	0.00	2.00	1.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	50.00	22.00	2.00	4.00	1.00	21.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	25.00	23.00	1.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	21.00	1.00	11.00	0.00	0.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	16.00	7.00	3.00	4.00	0.00	2.00
...............................................................C-CGA-A-ATGGATTTTGTTACCTCTGG....................................	25	1	14.00	0.00	0.00	0.00	0.00	14.00
...........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	11.00	5.00	0.00	2.00	0.00	4.00
..................TAACTTGTGTGGCTTCGAATGTACC....................................................................................	25	1	10.00	2.00	0.00	0.00	0.00	8.00
.............................................................CTC-CGA-A-ATGGATTTTGTTACCTCTG.....................................	26	1	9.00	0.00	0.00	0.00	0.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	8.00	7.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	7.00	0.00	0.00	0.00	0.00	7.00
.................GTAACTTGTGTGGCTTCGA...........................................................................................	19	1	6.00	3.00	1.00	0.00	0.00	2.00
...............................................................................................CGAGCCAATAAGTTCGGA..............	18	1	6.00	0.00	0.00	0.00	0.00	6.00
.......................................................................ATGGATTTTGTTACCTCTGGTATTCGAGC...........................	29	1	6.00	0.00	0.00	0.00	0.00	6.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	6.00	3.00	1.00	0.00	0.00	2.00
.......................................................................................CTGGTATTCGAGCCAATAAGTTCGGC..............	26	1	6.00	0.00	0.00	0.00	0.00	6.00
...............................................................C-CGA-A-ATGGATTTTGTTACCTCTGGTATT................................	29	1	5.00	0.00	0.00	0.00	0.00	5.00
.................GTAACTTGTGTGGCTTCGAATGTA......................................................................................	24	1	5.00	5.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATG........................................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGT.......................................................................................	23	1	5.00	5.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCCAGCCAATAAGTTCGT...............	21	1	5.00	0.00	0.00	0.00	0.00	5.00
...........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	5.00	1.00	0.00	0.00	0.00	4.00
...........................................................................................TATTCGAxCCAATAAGTTCGGA..............	21	1	5.00	0.00	0.00	0.00	0.00	5.00
.....................................TGTACCTAGTTGAGGAAA-----ACT................................................................	21	1	5.00	4.00	1.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	4.00	3.00	0.00	0.00	1.00	0.00
..................TAACTTGTGTGGCTTCGAATGTAC.....................................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	4.00	2.00	1.00	1.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	4.00	0.00	1.00	0.00	0.00	3.00
...........................................................................................TATTCGAGCCAATAATTTCGGA..............	22	1	4.00	1.00	0.00	0.00	0.00	3.00
...............................................................C-CGA-A-ATGGATTTTGTTACCTCTGGT...................................	26	1	4.00	0.00	1.00	0.00	0.00	3.00
..................................GAATGTACCTAGTTGAGGAA.........................................................................	20	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	4.00	0.00	4.00	0.00	0.00	0.00
......................................................A-----ACTC-CGA-A-ATGGATTTTGTTACCTCTG.....................................	28	1	4.00	0.00	0.00	0.00	0.00	4.00
...............................................................C-CGA-A-ATGGATTTTGTTACC.........................................	20	1	4.00	0.00	0.00	0.00	0.00	4.00
...........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	4.00	2.00	2.00	0.00	0.00	0.00
......................................................A-----ACTC-CGA-A-ATGGATTTTGTTACCTCTGG....................................	29	1	4.00	0.00	0.00	0.00	0.00	4.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	4.00	2.00	0.00	1.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	4.00	0.00	0.00	2.00	0.00	2.00
.............................................................CTC-CGA-A-ATGGATTTTGTTACCTCTGGT...................................	28	1	4.00	0.00	0.00	0.00	0.00	4.00
..................TAACTTGTGTGGCTTCGAATGT.......................................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
...............................................................C-CGA-A-ATGGATTTTTTTACCTC.......................................	22	1	3.00	0.00	0.00	0.00	0.00	3.00
...........................................................................................TATTCGAGCCAATAAGGTCGGT..............	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..................................................GGAAA-----ACTC-CGA-A-ATGGAT..................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
............................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	3.00	1.00	0.00	2.00	0.00	0.00
.......................................................................ATGGATTTTGTTACCTCTGGTATTCGAG............................	28	1	3.00	0.00	0.00	0.00	0.00	3.00
................................................................................GTTACCTCTGGTATTCGAGC...........................	20	1	3.00	0.00	3.00	0.00	0.00	0.00
.....................................................................................................AATAAGTTCGGCCACGAAATCGCATT	26	1	3.00	0.00	0.00	0.00	0.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCCG...............	21	1	3.00	1.00	1.00	1.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAA..........................................................................................	20	1	3.00	1.00	2.00	0.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGA..............	22	1	3.00	1.00	0.00	0.00	0.00	2.00
.....................................................................A-ATGGATTTTGTTACCTCT......................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	3.00	1.00	0.00	0.00	0.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	3.00	3.00	0.00	0.00	0.00	0.00
....................................................................................................CAATAAGTTCGGCCACGA.........	18	1	3.00	0.00	2.00	0.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	3.00	2.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGT...............	21	1	3.00	0.00	0.00	0.00	0.00	3.00
.................................................................CGA-A-ATGGATTTTGTTACCTCTGGTATT................................	28	1	3.00	0.00	0.00	0.00	0.00	3.00
...................AACTTGTGTGGCTTCGAATGTAC.....................................................................................	23	1	3.00	0.00	0.00	0.00	1.00	2.00

droWil1

TAGTTCGTACTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTAGTTGAGGAAA-----AATTCA-ATG-TTGGATTTTGTTACCTCTGGTATTCGAGCCAATAAGTTCGGCCACGAATTCGCATT	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	10030.00	5199.00	4639.00	160.00	32.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	5439.00	3794.00	1537.00	84.00	24.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	3904.00	3575.00	260.00	50.00	19.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1148.00	481.00	626.00	24.00	17.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	667.00	522.00	120.00	12.00	13.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	632.00	89.00	514.00	18.00	11.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	523.00	288.00	147.00	6.00	82.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	221.00	4.00	208.00	0.00	9.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	55.00	7.00	44.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	54.00	30.00	24.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	53.00	39.00	11.00	1.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	51.00	31.00	15.00	0.00	5.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	49.00	25.00	19.00	5.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	44.00	25.00	18.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	40.00	4.00	36.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	37.00	4.00	26.00	2.00	5.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	33.00	22.00	6.00	1.00	4.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	28.00	11.00	15.00	1.00	1.00
....................................ATGTACCTAGTTGAGGAAA-----A..................................................................	20	1	26.00	4.00	22.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	24.00	17.00	6.00	1.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	18.00	5.00	13.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCT.............	23	1	18.00	3.00	15.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	17.00	3.00	14.00	0.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	16.00	6.00	8.00	0.00	2.00
.............................................................................TTTGTTACCTCTGGTATTCGAGC...........................	23	1	15.00	1.00	14.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	15.00	2.00	12.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	14.00	10.00	3.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	14.00	3.00	10.00	1.00	0.00
...........................................................................................TATCCGAGCCAATAAGTTCGG...............	21	1	14.00	11.00	3.00	0.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	14.00	3.00	10.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGT...............	21	1	14.00	0.00	1.00	0.00	13.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	14.00	3.00	7.00	0.00	4.00
...........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	14.00	6.00	7.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGA...........................................................................................	19	1	13.00	2.00	10.00	1.00	0.00
...................................AATGTACCTAGTTGAGGAAA-----A..................................................................	21	1	13.00	3.00	10.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	13.00	8.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	13.00	10.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	13.00	6.00	7.00	0.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	12.00	12.00	0.00	0.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	12.00	4.00	8.00	0.00	0.00
....................................................................................................CAATAAGTTCGGCCACGA.........	18	1	12.00	0.00	12.00	0.00	0.00
...........................................................................................TATTCGAGCCAATGAGTTCGG...............	21	1	11.00	2.00	8.00	1.00	0.00
.............................................................ATTCA-ATG-TTGGATTTTGTTACCT........................................	24	1	11.00	1.00	0.00	0.00	10.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	11.00	6.00	3.00	0.00	2.00
...........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	11.00	6.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	11.00	3.00	8.00	0.00	0.00
......................................GTACCTAGTTGAGGAAA-----A..................................................................	18	1	11.00	0.00	11.00	0.00	0.00
...........................................................................................TATTCGAGACAATAAGTTCGG...............	21	1	10.00	3.00	7.00	0.00	0.00
...........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	10.00	2.00	7.00	1.00	0.00
..............................................................................TTGTTACCTCTGGTATTCGAGC...........................	22	1	10.00	0.00	10.00	0.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	10.00	9.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	10.00	7.00	3.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	10.00	1.00	0.00	0.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	10.00	1.00	9.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA......................................................................................	24	1	9.00	1.00	8.00	0.00	0.00
...........................................................................................TCTTCGAGCCAATAAGTTCGG...............	21	1	9.00	2.00	7.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	9.00	3.00	5.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	9.00	5.00	3.00	1.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	9.00	3.00	5.00	0.00	1.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	9.00	7.00	2.00	0.00	0.00
........................GTGTGGCTTCGAATGTAC.....................................................................................	18	1	9.00	0.00	7.00	0.00	2.00
...........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	9.00	5.00	4.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGCC.............	23	1	9.00	0.00	9.00	0.00	0.00
...........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	9.00	1.00	7.00	1.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	9.00	0.00	9.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	8.00	3.00	4.00	1.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	8.00	1.00	7.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	8.00	3.00	3.00	0.00	2.00
.................................................................A-ATG-TTGGATTTTGTTACCT........................................	20	1	8.00	0.00	6.00	0.00	2.00
...........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	8.00	7.00	1.00	0.00	0.00
..................TAACTTGTGTGGCTTCGAATGTACC....................................................................................	25	1	8.00	3.00	2.00	0.00	3.00
...........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	8.00	3.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	7.00	5.00	2.00	0.00	0.00
.................GTAACTTGTGTGGCTTCG............................................................................................	18	1	7.00	0.00	7.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	7.00	1.00	4.00	0.00	2.00
.................GTAACTTGTGTGGCTTCGAATGT.......................................................................................	23	1	7.00	3.00	4.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTACCT...................................................................................	27	1	7.00	0.00	6.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	7.00	1.00	5.00	1.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	7.00	5.00	2.00	0.00	0.00
...............................................................................TGTTACCTCTGGTATTCGAGC...........................	21	1	7.00	0.00	7.00	0.00	0.00
....................................ATGTACCTAGTTGAGGAAA-----AA.................................................................	21	1	7.00	1.00	6.00	0.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGT...............	21	1	7.00	2.00	1.00	0.00	4.00
........................GTGTGGCTTCGAATGTACCTAGTT...............................................................................	24	1	6.00	0.00	6.00	0.00	0.00
...........................................................................................TATTCGAACCAATAAGTTCGG...............	21	1	6.00	3.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	6.00	5.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCG................	20	1	6.00	6.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCG................	20	1	6.00	5.00	1.00	0.00	0.00
...................................AATGTACCTAGTTGAGGA..........................................................................	18	1	6.00	0.00	6.00	0.00	0.00
.....................................TGTACCTAGTTGAGGAAA-----AA.................................................................	20	1	6.00	2.00	4.00	0.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCGGT..............	22	1	6.00	3.00	3.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAA..........................................................................................	20	1	6.00	1.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	6.00	3.00	3.00	0.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCG................	20	1	6.00	6.00	0.00	0.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	6.00	5.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTA...............	21	1	6.00	4.00	2.00	0.00	0.00
.....................CTTGTGTGGCTTCGAATGTACCT...................................................................................	23	1	5.00	0.00	4.00	0.00	1.00
...........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	5.00	2.00	2.00	1.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCG................	20	1	5.00	5.00	0.00	0.00	0.00
.......................TGTGTGGCTTCGAATGTACC....................................................................................	20	1	5.00	2.00	3.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	5.00	3.00	2.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATG........................................................................................	22	1	5.00	3.00	1.00	1.00	0.00

droVir3

TGGTTCGTGCTCTTATCGTAACTTGTGTGGCTT-GAATGTACCTGGTTGAGGAAC----GAATTCA-ACGTTTGGATTTTGTTGCCTTTGGTATTCGAGCCAATAAGTTCGGCCACCGGTTCACATT	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	10718.00	10133.00	68.00	222.00	294.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	9482.00	9113.00	64.00	172.00	132.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2627.00	2566.00	19.00	11.00	30.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1159.00	986.00	8.00	45.00	118.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	1033.00	949.00	4.00	14.00	65.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	799.00	423.00	1.00	2.00	369.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	476.00	272.00	3.00	3.00	195.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	339.00	236.00	3.00	29.00	69.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	213.00	194.00	2.00	3.00	14.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTC.............	23	1	162.00	23.00	0.00	0.00	137.00	2.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	108.00	103.00	2.00	0.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	82.00	81.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	80.00	30.00	1.00	1.00	47.00	1.00
.................GTAACTTGTGTGGCTT-GAATGTACC....................................................................................	25	1	34.00	27.00	0.00	6.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	30.00	28.00	0.00	1.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	26.00	23.00	0.00	2.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	23.00	17.00	0.00	6.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	22.00	22.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	22.00	17.00	0.00	0.00	5.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	21.00	12.00	1.00	0.00	8.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGT...............	21	1	21.00	0.00	0.00	0.00	20.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	20.00	18.00	0.00	0.00	2.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	19.00	2.00	0.00	0.00	17.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	19.00	12.00	0.00	0.00	7.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	19.00	8.00	0.00	1.00	9.00	1.00
...........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	19.00	19.00	0.00	0.00	0.00	0.00
...................................AATGTACCTGGTTGAGGAAC----GA..................................................................	22	1	18.00	16.00	0.00	2.00	0.00	0.00
..............................CTT-GAATGTACCTGGTTGAGGAAC----GA..................................................................	26	1	17.00	15.00	0.00	2.00	0.00	0.00
...........................................................................................TATTCGAGCCAAAAAGTTCGG...............	21	1	17.00	17.00	0.00	0.00	0.00	0.00
..........................................................................................GTATTCGAGCCAATAAGTTCG................	21	1	17.00	17.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	17.00	8.00	0.00	5.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	16.00	13.00	0.00	2.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGT...............	21	1	16.00	2.00	0.00	0.00	14.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	16.00	11.00	0.00	0.00	5.00	0.00
.................GTAACTTGTGTGGCTT-GAATGTAC.....................................................................................	24	1	15.00	11.00	0.00	4.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	15.00	7.00	0.00	1.00	7.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAG...............	21	1	15.00	14.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTACGG...............	21	1	15.00	14.00	0.00	1.00	0.00	0.00
..........................................CTGGTTGAGGAAC----GAATTC..............................................................	19	1	15.00	6.00	0.00	9.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGATCGG...............	21	1	15.00	14.00	1.00	0.00	0.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	14.00	13.00	0.00	0.00	1.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	14.00	14.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTACGGT..............	22	1	14.00	14.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	14.00	11.00	0.00	0.00	3.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGG...............	22	1	14.00	14.00	0.00	0.00	0.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGGT..............	22	1	13.00	11.00	0.00	2.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	13.00	13.00	0.00	0.00	0.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	12.00	10.00	0.00	2.00	0.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	12.00	12.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCCATAAGTTCGGT..............	22	1	12.00	6.00	1.00	5.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	11.00	11.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	10.00	9.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	10.00	10.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCCGGT..............	22	1	10.00	9.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAATTCGG...............	21	1	10.00	10.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	10.00	9.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAAAAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	10.00	10.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTTGGT..............	22	1	10.00	9.00	0.00	1.00	0.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCGG...............	21	1	9.00	8.00	1.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGAC..............	22	1	9.00	1.00	0.00	0.00	8.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	9.00	9.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTCT.............	23	1	9.00	8.00	0.00	0.00	1.00	0.00
...................................AATGTACCTGGTTGAGGAAC----....................................................................	20	1	8.00	7.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGGTCGGT..............	22	1	8.00	5.00	0.00	2.00	1.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGG...............	19	1	8.00	7.00	0.00	1.00	0.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGG...............	20	1	8.00	8.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	8.00	6.00	0.00	0.00	2.00	0.00
...........................................................................................CATTCGAGCCAATAAGTTCGGT..............	22	1	8.00	6.00	0.00	2.00	0.00	0.00
...........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	7.00	5.00	0.00	0.00	2.00	0.00
........................................ACCTGGTTGAGGAAC----GAATTC..............................................................	21	1	7.00	3.00	0.00	4.00	0.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	7.00	7.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	7.00	2.00	0.00	1.00	4.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	7.00	7.00	0.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTT-TAATGTACC....................................................................................	25	1	7.00	0.00	0.00	4.00	3.00	0.00
..................TAACTTGTGTGGCTT-GAATGTAC.....................................................................................	23	1	7.00	6.00	0.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	7.00	6.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGATCG................	20	1	7.00	5.00	2.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTT-GAATGT.......................................................................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTACG................	20	1	7.00	7.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	7.00	4.00	0.00	2.00	1.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	6.00	6.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	6.00	5.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGT...............	21	1	6.00	0.00	0.00	0.00	5.00	1.00
..................TAACTTGTGTGGCTT-GAATGTACC....................................................................................	24	1	6.00	4.00	0.00	0.00	1.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	6.00	2.00	0.00	4.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGT...............	21	1	6.00	0.00	0.00	0.00	6.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	6.00	5.00	0.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	6.00	4.00	0.00	2.00	0.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGT...............	21	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................GTATTCGAGCCAATAAGTTCGG...............	22	1	6.00	6.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAACCAATAAGTTCGGT..............	22	1	6.00	4.00	0.00	1.00	1.00	0.00
...........................................................................................TATTCGAGCCxATAAGTTCGG...............	20	1	6.00	6.00	0.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCG................	20	1	6.00	5.00	0.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTG.............	23	1	6.00	2.00	0.00	1.00	3.00	0.00
...........................................................................................TATTCCAGCCAATAAGTTCGGT..............	22	1	6.00	4.00	0.00	0.00	2.00	0.00
.............................................................ATTCA-ACGTTTGGATTTTGTTGCCT........................................	25	1	6.00	0.00	0.00	2.00	4.00	0.00
...........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	6.00	4.00	1.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATGAGTTCGGT..............	22	1	6.00	6.00	0.00	0.00	0.00	0.00

droMoj3

TAGGTCGGGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTCGTCGAGCGAAAAGCGAATTCA-TTG-TTGGATTTTGTTGCTCTTGGTATTCGAGCCAATAAGTTCGGCAACCAGTTCGCATT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	10047.00	9628.00	210.00	130.00	79.00
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	6866.00	6486.00	186.00	120.00	74.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	2492.00	2385.00	67.00	40.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	1562.00	1513.00	28.00	11.00	10.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	1368.00	1304.00	28.00	17.00	19.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	353.00	332.00	13.00	7.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCGTC..............	22	1	346.00	335.00	8.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	166.00	161.00	2.00	3.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	163.00	136.00	13.00	5.00	9.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	142.00	122.00	0.00	0.00	20.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTA.............	23	1	106.00	102.00	4.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	95.00	84.00	10.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	50.00	41.00	4.00	4.00	1.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	37.00	24.00	8.00	4.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	28.00	28.00	0.00	0.00	0.00
......................................GTACCTCGTCGAGCGAAAAGCGA..................................................................	23	1	27.00	27.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTAC.....................................................................................	25	1	25.00	21.00	1.00	0.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCGTA..............	22	1	24.00	22.00	0.00	0.00	2.00
.................GTAACTTGTGTGGCTTCGAAT.........................................................................................	21	1	24.00	24.00	0.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGGT..............	22	1	18.00	18.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGG...............	21	1	17.00	17.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGA...........................................................................................	19	1	15.00	15.00	0.00	0.00	0.00
.............................................................ATTCA-TTG-TTGGATTTTGTTGCTCTTG.....................................	27	1	15.00	15.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	15.00	15.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAA.............	23	1	15.00	14.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCGGT..............	22	1	14.00	14.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGCTCGGT..............	22	1	14.00	9.00	2.00	2.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	13.00	13.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGT..............	22	1	11.00	11.00	0.00	0.00	0.00
...........................................................................................TATTCAAGCCAATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAATGTA......................................................................................	24	1	10.00	10.00	0.00	0.00	0.00
...........................................................................................TATTTGAGCCAATAAGTTCGGT..............	22	1	10.00	10.00	0.00	0.00	0.00
........................GTGTGGCTTCGAATGTACCTCGTCGA.............................................................................	26	1	10.00	9.00	0.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGCTCGG...............	21	1	10.00	7.00	2.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGATCGGT..............	22	1	10.00	7.00	1.00	1.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	10.00	8.00	2.00	0.00	0.00
....................................ATGTACCTCGTCGAGCGAAAAGCGA..................................................................	25	1	9.00	9.00	0.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCGG...............	21	1	9.00	9.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTCGG................	20	1	9.00	9.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCAGT..............	22	1	9.00	9.00	0.00	0.00	0.00
.................GTAACTTGTGTGGCTTCGAA..........................................................................................	20	1	9.00	8.00	0.00	0.00	1.00
...........................................................................................TATTCGAGCCAATAAGTTTGG...............	21	1	9.00	9.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTC.............	23	1	9.00	9.00	0.00	0.00	0.00
...................................AATGTACCTCGTCGAGCGAAAAGCGA..................................................................	26	1	8.00	8.00	0.00	0.00	0.00
...........................................................................................TATTAGAGCCAATAAGTTCGGT..............	22	1	8.00	7.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGTCT.............	23	1	8.00	8.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCTGT..............	22	1	8.00	6.00	0.00	2.00	0.00
............................................................................................ATTCGAGCCAATAAGTTCGGT..............	21	1	8.00	8.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCGATAAGTTCGGT..............	22	1	8.00	6.00	1.00	0.00	1.00
...........................................................................................TATTCGAGCCCATAAGTTCGG...............	21	1	8.00	3.00	0.00	4.00	1.00
...........................................................................................TATTCGAGCCAATCAGTTCGGT..............	22	1	7.00	1.00	0.00	4.00	2.00
...........................................................................................TATTCGAGCCAATAGGTTCGGT..............	22	1	7.00	6.00	1.00	0.00	0.00
...........................................................................................TATTCGGGCCAATAAGTTCGGT..............	22	1	7.00	6.00	1.00	0.00	0.00
..........................................................................................GTATTCGAGCCAATAAGTTCG................	21	1	7.00	7.00	0.00	0.00	0.00
...........................................................................................TATTCxAGCCAATAAGTTCGG...............	20	1	7.00	7.00	0.00	0.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGG...............	21	1	7.00	7.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCAAATAAGTTCGGT..............	22	1	7.00	6.00	1.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAATTTCG................	20	1	7.00	6.00	0.00	1.00	0.00
...........................................................................................GATTCGAGCCAATAAGTTCGGT..............	22	1	7.00	7.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGG..............	22	1	7.00	6.00	0.00	0.00	1.00
.................GTAACTTGTGTGGCTTCGAATGT.......................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
.............................................................ATTCA-TTG-TTGGATTTTGTTGCT.........................................	23	1	6.00	5.00	0.00	1.00	0.00
.............................................................................................TTCGAGCCAATAAGTTCGGT..............	20	1	6.00	6.00	0.00	0.00	0.00
...........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	6.00	5.00	0.00	1.00	0.00
...........................................................................................TATCCGAGCCAATAAGTTCGGT..............	22	1	6.00	6.00	0.00	0.00	0.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	6.00	5.00	1.00	0.00	0.00
.................................................................A-TTG-TTGGATTTTGTTGCTCTTG.....................................	23	1	6.00	5.00	0.00	1.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	6.00	6.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCAAATAAGTTCGG...............	21	1	6.00	6.00	0.00	0.00	0.00
...................................................CGAAAAGCGAATTCA-TTG-TTGGA...................................................	23	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGCGCCAATAAGTTCGGT..............	22	1	5.00	2.00	0.00	3.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCG................	20	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGATCCAATAAGTTCG................	20	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCxATAAGTTCGGT..............	21	1	5.00	5.00	0.00	0.00	0.00
........................GTGTGGCTTCGAATGTACCTCGTCG..............................................................................	25	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGGAT.............	23	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAACCAATAAGTTCGGT..............	22	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAGTAAGTTCGGT..............	22	1	5.00	3.00	1.00	1.00	0.00
.........................................CCTCGTCGAGCGAAAAGCGA..................................................................	20	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGGT..............	22	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTAGG...............	21	1	5.00	5.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAGGTTCGG...............	21	1	5.00	3.00	0.00	2.00	0.00
...........................................................................................TATTAGAGCCAATAAGTTCGG...............	21	1	4.00	2.00	0.00	0.00	2.00
...........................................................................................TATTCGAGCCAATACGTTCGGT..............	22	1	4.00	1.00	2.00	1.00	0.00
.................GTAACTTGTGTGGCTTCGAATG........................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCTAATAAGTTCGGT..............	22	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TAGTCGAGCCAATAAGTTCGGT..............	22	1	4.00	0.00	1.00	3.00	0.00
...........................................................................................TATTCGAGCCAATACGTTCGG...............	21	1	4.00	0.00	0.00	3.00	1.00
...........................................................................................TATTCGAGCCAATCAGTTCGG...............	21	1	4.00	0.00	1.00	2.00	1.00
...........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGTC..............	22	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAACAAGTTCGG...............	21	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCTAGCCAATAAGTTCGGA..............	22	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGACCCAATAAGTTCGGT..............	22	1	4.00	3.00	0.00	1.00	0.00
....................................ATGTACCTCGTCGAGCGAAAAGCGAATT...............................................................	28	1	4.00	4.00	0.00	0.00	0.00
.....................................TGTACCTCGTCGAGCGAAAAGCGA..................................................................	24	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................CTATTCGAGCCAATAAGTTCGGT..............	23	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................GTATTCGAGCCAATAAGTT..................	19	1	4.00	4.00	0.00	0.00	0.00
...........................................................................................TATTCGAGCCAATAACTTCGG...............	21	1	4.00	3.00	1.00	0.00	0.00
........................................ACCTCGTCGAGCGAAAAGCGA..................................................................	21	1	4.00	3.00	0.00	1.00	0.00

droGri2

TATTTCCAGCTCTTATCGTAACTTGTGTGGCTTCGAATGTACCTGGCTAAGGAAA--------------G-TTGGATTTCC------TAGGTATTCGAGCCAATAAGTTCGGCAGCGGGTTCGCAtt	Size	Hit Count	Total Norm	V109 Male body
...........................................................................................TATTCGAGCCAATAAGTTCGG...............	21	1	1242.00	1242.00
...........................................................................................TATTCGAGCCAATAAGTTCGGT..............	22	1	409.00	409.00
...........................................................................................TATTCGAGCCAATAAGTTCG................	20	1	252.00	252.00
...........................................................................................TATTCGAGCCAATAAGTTCGGA..............	22	1	156.00	156.00
...........................................................................................TATTCGAGCCAATAAGTTCGTT..............	22	1	50.00	50.00
...........................................................................................TATTCGAGCCAATAAGTTCGT...............	21	1	32.00	32.00
.................GTAACTTGTGTGGCTTCGAATGTACC....................................................................................	26	1	23.00	23.00
...........................................................................................TATTCGAGCCAATAAGTTCGA...............	21	1	21.00	21.00
...........................................................................................TATTCGAGCCAATAAGTCCGG...............	21	1	19.00	19.00
..........................................................................................GTATTCGAGCCAATAAGTTCG................	21	1	19.00	19.00
...........................................................................................TATTCGAGCCAATAAGTTCGGC..............	22	1	19.00	19.00
...........................................TGGCTAAGGAAA--------------G-TTGGATTTCC------TAGG....................................	27	1	14.00	14.00
...........................................................................................TATTCGAGCCAATAAGTTC.................	19	1	12.00	12.00
...........................................................................................TATTCGAGCCAATAAGTGCGG...............	21	1	9.00	9.00
...........................................................................................TATTCGAGCCAATAAGTTCGGTT.............	23	1	7.00	7.00
...........................................................................................TATTCGAGCCAATAAGTACGG...............	21	1	7.00	7.00
...........................................................................................TATTCGAGCCAATAAGTACG................	20	1	6.00	6.00
...........................................................................................TACTCGAGCCAATAAGTTCGG...............	21	1	6.00	6.00
...........................................................................................TATTCCAGCCAATAAGTTCGG...............	21	1	6.00	6.00
...........................................................................................TATTCGAGCCAATAAGTCCGGT..............	22	1	6.00	6.00
...........................................................................................TATTCGCGCCAATAAGTTCGG...............	21	1	5.00	5.00
...........................................................................................TATTCAAGCCAATAAGTTCGG...............	21	1	5.00	5.00
...........................................................................................TATTCGAGCCAATAAGTTCTT...............	21	1	5.00	5.00
...........................................................................................TATTCGAGCCAATAAGTTCGC...............	21	1	4.00	4.00
...........................................................................................TATTCTAGCCAATAAGTTCGG...............	21	1	4.00	4.00
...........................................................................................TATTCGAGCCAATAAGTT..................	18	1	4.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCT................	20	1	4.00	4.00
...........................................................................................TATTCGAGCCAATAAGTTCTG...............	21	1	3.00	3.00
...........................................................................................TATTCGTGCCAATAAGTTCGG...............	21	1	3.00	3.00
...........................................................................................GATTCGAGCCAATAAGTTCGG...............	21	1	3.00	3.00
...........................................................................................TATTCGCGCCAATAAGTTCGGA..............	22	1	3.00	3.00
...........................................................................................TATTCGGGCCAATAAGTTCGG...............	21	1	3.00	3.00
...........................................................................................TATTCGAGTCAATAAGTTCGG...............	21	1	3.00	3.00
...........................................................................................TATTCGAGCCAATAAGTTCA................	20	1	3.00	3.00
...........................................................................................TATTTGAGCCAATAAGTTCGG...............	21	1	3.00	3.00
...........................................................................................TATTCGAGCCGATAAGTTCGG...............	21	1	3.00	3.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image