dme-mir-311- Best orthologs

dme-mir-311	chr2R:16471382-16471465 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 16471393-16471414
   star strand at position 16471429-16471451
   mutations
   read mismatches

Notes: The Wiliistoni and Grimshawi orthologs do look suspicious.

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:16471367-16471480 -		1	TGAAAAATC----GA----------------------------------------------AATTT--CTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCAT---TT------------GTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-ACATC-G-------------------------------A------AAAG
droSim1	chr2R:15132667-15132782 -	LASTZ	1	TGAAAAATC----GA----------------------------------------------AATTT--CTAGATCATTTTTCGGACGGTATATGAGTCAATATTTTTTTT-TT------------TTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-GCATC-G-------------------------------A------AAAA
droSec1	super_1:14025591-14025696 -	LASTZ	1	GAA-----------------------------------------------------------ATTT--CTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCT---TT------------TTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-GCATC-G-------------------------------A------AAAA
droYak2	chr2R:12724807-12724923 +	LASTZ	1	TTTAAAAATATC-TC----------------------------------------------ACTTT--CTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCT---TG------------TTAGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GACTT-GCATC-G-------------------------------A------AAAG
droEre2	scaffold_4845:10616532-10616644 -	LASTZ	1	TTGAAACCC----CT-----------------------------------------------AACC--CTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCT---TG------------TTAGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GACTT-ACATC-A-------------------------------A------AAAG
droEug1	scf7180000409474:1490230-1490341 +	LASTZ	4	AACAGAGTT----GA----------------------------------------------AATTC--CTAAAT-ATTTTTAGGCCTGTGTCTGT-TCAATATAATTA---TT------------TAAAAATATATTGCACACTCACCGGCCTGAAAAGAT-TAGG--GATAT-TCTTT-A-------------------------------A------AAAG
droBia1	scf7180000302291:2816436-2816549 +	LASTZ	4	GTAAAAATC----GG-----TTTAAAT----------------------------------GGTTC--CGAGATAGTTTTTCGGACGGTGTTTGTGACAATATTTTAG---G-------------TTTAAAAATATTGCACATTCACCGGCCTCTAAACAT-CAAG--GGCAT-TCCTC--------------------------------------------
droTak1	scf7180000415401:99738-99848 -	LASTZ	4	AATAATTCA----AA-------------------------------------TTAATTCCA---------AGATAGTTTTTCGGACGGTGTCTGCGTCAATATTTCAG---TT------------TTAAAACATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GGTGT-TCCTC--------------------------------------------
droEle1	scf7180000491201:735981-736107 -	LASTZ	4	CAAAAAAAAAAGA--AGGGTTTGA---------------------------TCTAAGACCT---------AGATTCTTTTTCGGACGGTATCTGCGACAATATGCGAA---C-------------TTTTAACATATTGCACATTTACCGGCCTGAAATTAT-CATG--GATAT-TCATC-A-------------------------------A------GATA
droRho1	scf7180000780104:82075-82185 -	LASTZ	4	TTCAAACTA-----------------------------------------------------AGTC--CTAGGTTGTTTTTCGGACGGTATTTGTGACAATATGCTTA---AT------------TTTAGACATATTGCACATTTACCGGCCTGAAATTAA-CATG--GATAT-TCTTC-G-------------------------------A------TATT
droFic1	scf7180000454039:1776033-1776176 -	LASTZ	4	CGTAGAACGACGA--A--------AAGAGTGTTTTTTTATTTTTTTTTATT----------TGTTT--CCGGACAGTTGTTTGGACGGAAGATGCGCCAGTATGCGGA---TT------------TTTAAGCATATTGCACATTTACCGGCCTAGTAATGC-ACTG--GCTAT-TCATC-A-------------------------------A------TTAT
droKik1	scf7180000302471:941554-941677 -	LASTZ	4	GCTAAAAGT----GTA-ATTTTAG---------------------------ACTATTTTCT---------GGACCATGATTCGGACGGGATCTGTGTCAATACTTGCT---T-------------TTTATTCGTATTGCACACATACCGGCCTTATAATAT-TCAG--ACTGA-TCAAC-A-------------------------------G------AATT
droAna3	scaffold_13266:4132915-4133034 +	LASTZ	1	AGAGAAATA----TT----------------------------------------------TGTTG--CCAGATTATCTTCAGGACGGTATTTGTGTCAATATGGATA---T-------------TTCAAACATATTGCACTTATACCGGCCTGATGATCT-CCGG--CGCTCGTCATC-T-------------------------------GTGACTAAAAG
droBip1	scf7180000396427:2575634-2575744 +	LASTZ	4	TGAAATATT----------------------------------------------------TGTGG--CCAGATACCCTTTAGGTCGGTATTTGTGACAATATGATA-----T------------TTCAATCATATTGCACTTGTACCGGCCTGATAATAT-CTGG--CATTCGTCATC-T-------------------------------G------TGAG
dp4	chr3:8679876-8679985 +	LASTZ	1	CATCGAGCT----GC--------------------------------------------------------TTTGATTTGTAGGCCGTGGTTCTTGCAAATACGGA------T------------TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACA-ATAG--CAACG-CCGGC-A-------------------------------ACAGCAAAGTA
droPer1	super_4:2566469-2566567 +	LASTZ	1	ACC---------------------------------------------------------------------------TTCAAGCTGGGGGATGG-GCAATACTGTGTTGTAT------------TTGAACAGTATTGCACACCCACTGGCCTGAAAGTGC-CTAC--TGCTG-GGTTC-A-------------------------------ACAACTTAATC
droWil1	scaffold_180700:3453290-3453392 +	MAF	1	TAATTTATA----------------------------------------------------GGCTT--CGGG------------------GTTGTTGCAAAATGGTTT---ATTCTAA-----TAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTGAACA--TCCCG-G-------------------------------G------TGGG
droVir3	scaffold_12875:13668876-13669002 -	LASTZ	1	GAAAAACTA----GT----------------------------------------------GCGTCCGCATGACCATTTTAAGGACGGTATTTGTGACAATATGTGCA---GT-TAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGA-ACCG--TGCTC-TCTTC-G-------------------------------A------TATA
droMoj3	scaffold_6496:9090405-9090568 -	MAF	1	AAACGAAAAATGT--C--------AA-----------------------------------ATTTT--CAGCTGCGTTTGCAGGACGGTATTTGTGACAATATGAATT---ATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACA-GTTG--TGAGC-CCGTCGATTTAAATGATTTGTGTATTTAAAATAAATTTTC-----ACCA
droGri2	scaffold_15245:17564385-17564474 +	LASTZ	4	AAATTTGCA----GT----------------------------------------------------------TCGTGTTTA-----------------GTGTTTTTTCC-CG------------CTTAAGCATCTTGCAATTTATATGGCTTGCAGTTAT-CTGC--ATTAA-CCATT-T-------------------------------T------CAGG

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TGAAAAATC----GA----------------------------------------------AATTT--CTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCAT---TT------------GTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-ACATC-G-------------------------------A------AAAG
droSim1	TGAAAAATC----GA----------------------------------------------AATTT--CTAGATCATTTTTCGGACGGTATATGAGTCAATATTTTTTTT-TT------------TTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-GCATC-G-------------------------------A------AAAA
droSec1	GAA-----------------------------------------------------------ATTT--CTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCT---TT------------TTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-GCATC-G-------------------------------A------AAAA
droYak2	TTTAAAAATATC-TC----------------------------------------------ACTTT--CTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCT---TG------------TTAGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GACTT-GCATC-G-------------------------------A------AAAG
droEre2	TTGAAACCC----CT-----------------------------------------------AACC--CTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCT---TG------------TTAGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GACTT-ACATC-A-------------------------------A------AAAG
droEug1	AACAGAGTT----GA----------------------------------------------AATTC--CTAAAT-ATTTTTAGGCCTGTGTCTGT-TCAATATAATTA---TT------------TAAAAATATATTGCACACTCACCGGCCTGAAAAGAT-TAGG--GATAT-TCTTT-A-------------------------------A------AAAG
droBia1	GTAAAAATC----GG-----TTTAAAT----------------------------------GGTTC--CGAGATAGTTTTTCGGACGGTGTTTGTGACAATATTTTAG---G-------------TTTAAAAATATTGCACATTCACCGGCCTCTAAACAT-CAAG--GGCAT-TCCTC--------------------------------------------
droTak1	AATAATTCA----AA-------------------------------------TTAATTCCA---------AGATAGTTTTTCGGACGGTGTCTGCGTCAATATTTCAG---TT------------TTAAAACATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GGTGT-TCCTC--------------------------------------------
droEle1	CAAAAAAAAAAGA--AGGGTTTGA---------------------------TCTAAGACCT---------AGATTCTTTTTCGGACGGTATCTGCGACAATATGCGAA---C-------------TTTTAACATATTGCACATTTACCGGCCTGAAATTAT-CATG--GATAT-TCATC-A-------------------------------A------GATA
droRho1	TTCAAACTA-----------------------------------------------------AGTC--CTAGGTTGTTTTTCGGACGGTATTTGTGACAATATGCTTA---AT------------TTTAGACATATTGCACATTTACCGGCCTGAAATTAA-CATG--GATAT-TCTTC-G-------------------------------A------TATT
droFic1	CGTAGAACGACGA--A--------AAGAGTGTTTTTTTATTTTTTTTTATT----------TGTTT--CCGGACAGTTGTTTGGACGGAAGATGCGCCAGTATGCGGA---TT------------TTTAAGCATATTGCACATTTACCGGCCTAGTAATGC-ACTG--GCTAT-TCATC-A-------------------------------A------TTAT
droKik1	GCTAAAAGT----GTA-ATTTTAG---------------------------ACTATTTTCT---------GGACCATGATTCGGACGGGATCTGTGTCAATACTTGCT---T-------------TTTATTCGTATTGCACACATACCGGCCTTATAATAT-TCAG--ACTGA-TCAAC-A-------------------------------G------AATT
droAna3	AGAGAAATA----TT----------------------------------------------TGTTG--CCAGATTATCTTCAGGACGGTATTTGTGTCAATATGGATA---T-------------TTCAAACATATTGCACTTATACCGGCCTGATGATCT-CCGG--CGCTCGTCATC-T-------------------------------GTGACTAAAAG
droBip1	TGAAATATT----------------------------------------------------TGTGG--CCAGATACCCTTTAGGTCGGTATTTGTGACAATATGATA-----T------------TTCAATCATATTGCACTTGTACCGGCCTGATAATAT-CTGG--CATTCGTCATC-T-------------------------------G------TGAG
dp4	CATCGAGCT----GC--------------------------------------------------------TTTGATTTGTAGGCCGTGGTTCTTGCAAATACGGA------T------------TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACA-ATAG--CAACG-CCGGC-A-------------------------------ACAGCAAAGTA
droPer1	ACC---------------------------------------------------------------------------TTCAAGCTGGGGGATGG-GCAATACTGTGTTGTAT------------TTGAACAGTATTGCACACCCACTGGCCTGAAAGTGC-CTAC--TGCTG-GGTTC-A-------------------------------ACAACTTAATC
droWil1	TAATTTATA----------------------------------------------------GGCTT--CGGG------------------GTTGTTGCAAAATGGTTT---ATTCTAA-----TAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTGAACA--TCCCG-G-------------------------------G------TGGG
droVir3	GAAAAACTA----GT----------------------------------------------GCGTCCGCATGACCATTTTAAGGACGGTATTTGTGACAATATGTGCA---GT-TAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGA-ACCG--TGCTC-TCTTC-G-------------------------------A------TATA
droMoj3	AAACGAAAAATGT--C--------AA-----------------------------------ATTTT--CAGCTGCGTTTGCAGGACGGTATTTGTGACAATATGAATT---ATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACA-GTTG--TGAGC-CCGTCGATTTAAATGATTTGTGTATTTAAAATAAATTTTC-----ACCA
droGri2	AAATTTGCA----GT----------------------------------------------------------TCGTGTTTA-----------------GTGTTTTTTCC-CG------------CTTAAGCATCTTGCAATTTATATGGCTTGCAGTTAT-CTGC--ATTAA-CCATT-T-------------------------------T------CAGG

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TGAAAAATC----GA----------------------------------------------AATTT--CTAGATCATTTTTCGGACGGTATATGAGTCAATATTTTTTTT-TT------------TTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-GCATC-G-------------------------------A------AAAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.....................................................................................................................................TATTGCACATTCACCGGCCTGA....................................................................	22	1	35021.00	5438.00	118.00	1798.00	27667.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGG....................................................................	22	1	7314.00	19.00	25.00	451.00	6819.00
.....................................................................................................................................TATTGCACATTCACCGGCCTG.....................................................................	21	1	4493.00	644.00	17.00	764.00	3068.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAA...................................................................	23	1	2828.00	321.00	4.00	231.00	2272.00
.....................................................................................................................................TATTGCACATTCACCGGCC.......................................................................	19	1	1860.00	0.00	7.00	151.00	1702.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAA..................................................................	24	1	1662.00	69.00	1.00	64.00	1528.00
.................................................................................CGGACGGTATATGAGTCAATATT.......................................................................................................................	23	1	446.00	81.00	0.00	47.00	318.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAT...................................................................	23	1	391.00	15.00	4.00	87.00	285.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGT....................................................................	22	1	259.00	42.00	1.00	141.00	75.00
......................................................................................................................................ATTGCACATTCACCGGCCTGA....................................................................	21	1	234.00	73.00	1.00	12.00	148.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAC...................................................................	23	1	166.00	4.00	0.00	31.00	131.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAC..................................................................	24	1	147.00	1.00	0.00	4.00	142.00
.................................................................................CGGACGGTATATGAGTCAATAT........................................................................................................................	22	1	132.00	23.00	0.00	14.00	95.00
.....................................................................................................................................TATTGCACATTCACCGGCCGG.....................................................................	21	1	114.00	1.00	0.00	27.00	86.00
.....................................................................................................................................TATTGCACATTCACCGGC........................................................................	18	1	104.00	1.00	1.00	6.00	96.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAAA.................................................................	25	1	87.00	7.00	0.00	3.00	77.00
.....................................................................................................................................TATTTCACATTCACCGGCCTGA....................................................................	22	1	86.00	0.00	0.00	2.00	84.00
......................................................................................................................................ATTGCACATTCACCGGCCTGAA...................................................................	22	1	83.00	6.00	0.00	7.00	70.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGC....................................................................	22	1	69.00	27.00	1.00	15.00	26.00
.....................................................................................................................................TATTGCACATTCACCGGCCT......................................................................	20	1	58.00	18.00	0.00	16.00	24.00
......................................................................................................................................ATTGCACATTCACCGGCCTG.....................................................................	20	1	53.00	11.00	1.00	11.00	30.00
.....................................................................................................................................TATTGCACATTCACCGGCCTT.....................................................................	21	1	48.00	1.00	0.00	3.00	44.00
.....................................................................................................................................TATTGCACATTCACCGGAC.......................................................................	19	1	47.00	0.00	0.00	6.00	41.00
.....................................................................................................................................TATTCCACATTCACCGGCCTGA....................................................................	22	1	47.00	3.00	0.00	0.00	44.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTA...................................................................	23	1	45.00	8.00	0.00	32.00	5.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAG...................................................................	23	1	43.00	5.00	0.00	4.00	34.00
......................................................................................................................................ATTGCACATTCACCGGCCTGAAA..................................................................	23	1	42.00	0.00	0.00	2.00	40.00
.....................................................................................................................................TATTGCGCATTCACCGGCCTGA....................................................................	22	1	41.00	14.00	0.00	1.00	26.00
......................................................................................................................................ATTGCACATTCACCGGCCTGG....................................................................	21	1	38.00	2.00	0.00	3.00	33.00
.........................................................................................................................................GCACATTCACCGGCCTGA....................................................................	18	1	38.00	3.00	0.00	1.00	34.00
.....................................................................................................................................TATTGCACATTCACCGGCCCGA....................................................................	22	1	38.00	6.00	0.00	1.00	31.00
.....................................................................................................................................TATTxCACATTCACCGGCCTGA....................................................................	21	1	32.00	0.00	0.00	0.00	32.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTT...................................................................	23	1	31.00	0.00	0.00	31.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTTA....................................................................	22	1	30.00	13.00	0.00	0.00	17.00
.................................................................................CGGACGGTATATGATTCAATATT.......................................................................................................................	23	1	29.00	0.00	0.00	0.00	29.00
.....................................................................................................................................TATTGCACATTCACCGGACTGA....................................................................	22	1	28.00	23.00	0.00	2.00	3.00
.....................................................................................................................................TATTGCACATTCGCCGGCCTGA....................................................................	22	1	27.00	8.00	0.00	1.00	18.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAG..................................................................	24	1	27.00	3.00	0.00	1.00	23.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAT..................................................................	24	1	26.00	10.00	0.00	3.00	13.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGATA..................................................................	24	1	25.00	3.00	0.00	3.00	19.00
.....................................................................................................................................TATTGCACATTCAACGGCCTGA....................................................................	22	1	24.00	19.00	0.00	2.00	3.00
.....................................................................................................................................TATTGCACATTCACCGACCTGA....................................................................	22	1	23.00	9.00	0.00	0.00	14.00
.....................................................................................................................................TATTGCACACTCACCGGCCTGA....................................................................	22	1	22.00	11.00	0.00	1.00	10.00
.................................................................................CGGACGGTATATGAGTCAATATTA......................................................................................................................	24	1	21.00	11.00	0.00	0.00	10.00
.....................................................................................................................................TATTTCACATTCACCGGCCTGG....................................................................	22	1	21.00	0.00	0.00	1.00	20.00
.....................................................................................................................................TATTGCACATTCACTGGCCTGA....................................................................	22	1	21.00	9.00	0.00	2.00	10.00
.....................................................................................................................................TATTGCACATTCACAGGCCTGA....................................................................	22	1	20.00	7.00	0.00	2.00	11.00
.....................................................................................................................................TATTGCACATTCACCGGTCTGA....................................................................	22	1	20.00	8.00	1.00	0.00	11.00
.....................................................................................................................................TATTGCACGTTCACCGGCCTGA....................................................................	22	1	19.00	7.00	0.00	1.00	11.00
.....................................................................................................................................TATTGCACATTCACCAGCCTGA....................................................................	22	1	19.00	9.00	0.00	0.00	10.00
.....................................................................................................................................TATTGCACATTCACCGGCCCG.....................................................................	21	1	18.00	2.00	0.00	0.00	16.00
.....................................................................................................................................TATTGCACATTCACCTGCCTGA....................................................................	22	1	18.00	11.00	0.00	1.00	6.00
.....................................................................................................................................TATTGCATATTCACCGGCCTGA....................................................................	22	1	18.00	6.00	0.00	0.00	12.00
.....................................................................................................................................TATTTCACATTCACCGGCCTGAA...................................................................	23	1	17.00	0.00	0.00	0.00	17.00
......................................................................................................................................ATTGCACATTCACCGGCCTGAT...................................................................	22	1	17.00	1.00	0.00	3.00	13.00
.....................................................................................................................................TATTGCACCTTCACCGGCCTGA....................................................................	22	1	17.00	6.00	0.00	1.00	10.00
.....................................................................................................................................TATTCCACATTCACCGGCCTGG....................................................................	22	1	17.00	0.00	0.00	0.00	17.00
.................................................................................CGGACGGTATATGACTCAATATT.......................................................................................................................	23	1	17.00	0.00	0.00	1.00	16.00
.....................................................................................................................................TATTGCACATTCACCGGCCTTG....................................................................	22	1	16.00	1.00	0.00	0.00	15.00
.....................................................................................................................................TATTGCACATTCACCGGCCTCA....................................................................	22	1	15.00	8.00	0.00	1.00	6.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTAA..................................................................	24	1	15.00	0.00	0.00	10.00	5.00
.....................................................................................................................................TATTACACATTCACCGGCCTGA....................................................................	22	1	15.00	2.00	0.00	1.00	12.00
.....................................................................................................................................TATTGCAAATTCACCGGCCTGA....................................................................	22	1	15.00	12.00	0.00	1.00	2.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGACA..................................................................	24	1	15.00	1.00	0.00	2.00	12.00
....................................................................................................................................CTATTGCACATTCACCGGCCTGA....................................................................	23	1	14.00	11.00	0.00	0.00	3.00
.....................................................................................................................................TACTGCACATTCACCGGCCTGA....................................................................	22	1	14.00	5.00	0.00	0.00	9.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAAC.................................................................	25	1	14.00	0.00	0.00	0.00	14.00
.....................................................................................................................................TATTGCACATTCACCGTCCTG.....................................................................	21	1	13.00	3.00	0.00	1.00	9.00
......................................................................................................................................ATTGCACATTCACCGGCC.......................................................................	18	1	13.00	0.00	0.00	2.00	11.00
.....................................................................................................................................CATTGCACATTCACCGGCCTGA....................................................................	22	1	13.00	6.00	1.00	0.00	6.00
.....................................................................................................................................TATTGCACATCCACCGGCCTGA....................................................................	22	1	13.00	6.00	0.00	0.00	7.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGATT..................................................................	24	1	13.00	1.00	0.00	5.00	7.00
.....................................................................................................................................TATTGCACATTCATCGGCCTGA....................................................................	22	1	12.00	3.00	0.00	1.00	8.00
.................................................................................CGGACGGTATATGAGTCAAT..........................................................................................................................	20	1	12.00	0.00	0.00	2.00	10.00
.....................................................................................................................................TGTTGCACATTCACCGGCCTGA....................................................................	22	1	12.00	5.00	0.00	0.00	7.00
.....................................................................................................................................TATTxCACATTCACCGGCCTGAA...................................................................	22	1	12.00	0.00	0.00	2.00	10.00
.....................................................................................................................................TATTGTACATTCACCGGCCTGA....................................................................	22	1	12.00	5.00	0.00	0.00	7.00
.....................................................................................................................................TATTGCACATTCACCGTCCTGA....................................................................	22	1	12.00	9.00	0.00	0.00	3.00
.....................................................................................................................................TATCGCACATTCACCGGCCTGA....................................................................	22	1	12.00	5.00	0.00	1.00	6.00
.....................................................................................................................................TATTGCACATTTACCGGCCTGA....................................................................	22	1	11.00	5.00	0.00	1.00	5.00
.................................................................................CGGACGGTATATGAGTCAATATTAA.....................................................................................................................	25	1	11.00	6.00	0.00	0.00	5.00
.................................................................................CGGACGGTATATGATTCAATAT........................................................................................................................	22	1	11.00	0.00	0.00	1.00	10.00
.....................................................................................................................................TATTGCACATTCACCCGCCTGA....................................................................	22	1	11.00	11.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCCCCGGCCTGA....................................................................	22	1	10.00	10.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTAA....................................................................	22	1	10.00	4.00	0.00	1.00	5.00
.....................................................................................................................................TATTGCACATTCACCTGCCTG.....................................................................	21	1	10.00	1.00	0.00	3.00	6.00
.................................................................................CGGACGGTATATGAGTCAATA.........................................................................................................................	21	1	10.00	3.00	0.00	1.00	6.00
.....................................................................................................................................TATTGCCCATTCACCGGCCTGA....................................................................	22	1	9.00	2.00	0.00	1.00	6.00
.....................................................................................................................................TATTGGACATTCACCGGCCTGA....................................................................	22	1	9.00	2.00	1.00	1.00	5.00
.....................................................................................................................................TATTTCACATTCACCGGCC.......................................................................	19	1	9.00	0.00	0.00	1.00	8.00
.....................................................................................................................................TATTCCACATTCACCGGCCTGAA...................................................................	23	1	9.00	0.00	0.00	1.00	8.00
.................................................................................CGGACGGTATATGACTCAATAT........................................................................................................................	22	1	9.00	0.00	0.00	1.00	8.00
...................................................................................................................................TATATTGCACATTCACCGGCCTGA....................................................................	24	1	8.00	2.00	0.00	1.00	5.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGCA...................................................................	23	1	8.00	7.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCCGG....................................................................	22	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................................................TATTTCACATTCACCGGCCTG.....................................................................	21	1	8.00	0.00	0.00	3.00	5.00
.....................................................................................................................................TATTGCACATTCACCGCCCTGA....................................................................	22	1	8.00	3.00	0.00	0.00	5.00
.....................................................................................................................................TCTTGCACATTCACCGGCCTGA....................................................................	22	1	8.00	8.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGGCTGA....................................................................	22	1	8.00	5.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATTCACCCGCCTG.....................................................................	21	1	8.00	4.00	0.00	1.00	3.00
.....................................................................................................................................TATTxCACATTCACCGGCCTGG....................................................................	21	1	8.00	0.00	0.00	0.00	8.00

droSec1

GAA-----------------------------------------------------------ATTT--CTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCT---TT------------TTCGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--AATTA-GCATC-G-------------------------------A------AAAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.....................................................................................................................................TATTGCACATTCACCGGCCTGA....................................................................	22	3	1024.00	15.00	899.67	109.33
.....................................................................................................................................TATTGCACATTCACCGGCCTG.....................................................................	21	3	99.67	2.00	88.67	9.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAA...................................................................	23	3	68.33	0.67	61.67	6.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAA..................................................................	24	3	43.33	0.00	41.00	2.33
......................................................................................................................................ATTGCACATTCACCGGCCTGA....................................................................	21	3	17.00	0.00	16.00	1.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAT...................................................................	23	3	13.33	0.33	11.33	1.67
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAT..................................................................	24	3	12.00	1.33	10.33	0.33
.....................................................................................................................................TATTGCACATTCACCGGCCT......................................................................	20	3	9.33	0.33	8.33	0.67
.....................................................................................................................................TATTGCACATTCACCGGCCTGT....................................................................	22	3	8.67	2.33	5.00	1.33
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAAA.................................................................	25	3	7.00	0.33	6.33	0.33
.....................................................................................................................................TATTGCACATTCACCGGTCTGA....................................................................	22	3	4.00	0.00	3.33	0.67
.....................................................................................................................................TATTGCACATTCACCGGC........................................................................	18	3	3.67	0.33	3.33	0.00
.....................................................................................................................................TATTGCACATTCACCGGCTTGA....................................................................	22	3	3.67	0.33	3.33	0.00
.....................................................................................................................................TATTCCACATTCACCGGCCTGA....................................................................	22	3	3.00	0.00	3.00	0.00
.................................................................................CGGACGGTATATGAGTCAATGTT.......................................................................................................................	23	3	2.67	0.33	1.67	0.67
.....................................................................................................................................TATTGCACATTCATCGGCCTGA....................................................................	22	3	2.67	0.00	2.67	0.00
.....................................................................................................................................TATTGCATATTCACCGGCCTGA....................................................................	22	3	2.67	0.00	2.67	0.00
.......................................................................................................................................TTGCACATTCACCGGCCTGA....................................................................	20	3	2.33	0.00	2.33	0.00
.....................................................................................................................................TATTGxxCATTCACCGGCCTGA....................................................................	20	3	2.33	0.00	2.33	0.00
.....................................................................................................................................TATTGCACATTCACCGACCTGA....................................................................	22	3	2.33	0.00	2.33	0.00
.....................................................................................................................................TATTGCGCATTCACCGGCCTGA....................................................................	22	3	2.33	0.00	2.33	0.00
.....................................................................................................................................TATTGCACATTCACCGCCCTGA....................................................................	22	3	2.00	0.00	1.67	0.33
.....................................................................................................................................TATTGCACATTCACCGGCCTGTAT..................................................................	24	3	2.00	2.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGACA..................................................................	24	3	1.67	0.00	1.67	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAG...................................................................	23	3	1.67	0.00	1.67	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAC..................................................................	24	3	1.67	0.33	1.33	0.00
.....................................................................................................................................TATTGCACATTCATCGGCCTGAA...................................................................	23	3	1.67	0.00	1.67	0.00
......................................................................................................................................ATTGCACATTCACCGGCCTG.....................................................................	20	3	1.67	0.00	1.67	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAAT.................................................................	25	3	1.67	0.33	1.33	0.00
.....................................................................................................................................TATTGCACGTTCACCGGCCTGA....................................................................	22	3	1.67	0.00	1.33	0.33
.....................................................................................................................................TATTGCACATTCACCGGCCTGG....................................................................	22	3	1.67	0.00	1.67	0.00
.....................................................................................................................................TATTGCACATTCACCGTCCTGA....................................................................	22	3	1.33	0.00	0.33	1.00
.....................................................................................................................................TATTGCACACTCACCGGCCTGA....................................................................	22	3	1.33	0.00	1.33	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAAAA................................................................	26	3	1.33	0.00	1.33	0.00
.....................................................................................................................................TATTGCACATACACCGGCCTGA....................................................................	22	3	1.33	0.00	1.33	0.00
.....................................................................................................................................TATTGCCCATTCACCGGCCTGA....................................................................	22	3	1.33	0.00	1.33	0.00
.....................................................................................................................................TACTGCACATTCACCGGCCTGA....................................................................	22	3	1.33	0.00	1.33	0.00
.....................................................................................................................................TATTGCACATTCACCTGCCTGA....................................................................	22	3	1.33	0.00	0.67	0.67
.....................................................................................................................................TATTGCACATTCACCGGCCTGAC...................................................................	23	3	1.33	0.00	1.33	0.00
.....................................................................................................................................TATTTCACATTCACCGGCCTGA....................................................................	22	3	1.33	0.00	1.00	0.33
.....................................................................................................................................TATTGCACATTCACCGGCCTGATA..................................................................	24	3	1.33	0.33	0.67	0.33
.....................................................................................................................................TATTGCACATCCACCGGCCTGA....................................................................	22	3	1.00	0.00	1.00	0.00
....................................................................................................................................CTATTGCACATTCACCGGCCTGA....................................................................	23	3	1.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCCGA....................................................................	22	3	1.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCATATTCACCGGCCTG.....................................................................	21	3	1.00	0.00	1.00	0.00
......................................................................................................................................ATTGCACATTCACCGGCCTGAA...................................................................	22	3	1.00	0.33	0.67	0.00
.....................................................................................................................................TATTGTACATTCACCGGCCTGA....................................................................	22	3	1.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGC....................................................................	22	3	1.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACATTCATCGGCCTGAAA..................................................................	24	3	1.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACATTCACTGGCCTGA....................................................................	22	3	1.00	0.00	1.00	0.00
.....................................................................................................................................AATTGCACATTCACCGGCCTGA....................................................................	22	3	1.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACATTAACCGGCCTGA....................................................................	22	3	1.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGTCTGAA...................................................................	23	3	1.00	0.00	1.00	0.00

droYak2

TTTAAAAATATC-TC----------------------------------------------ACTTT--CTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCT---TG------------TTAGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GACTT-GCATC-G-------------------------------A------AAAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.....................................................................................................................................TATTGCACATTCACCGGCCTGA....................................................................	22	1	6252.00	5878.00	14.00	42.00	11.00	307.00
.....................................................................................................................................TATTGCACATTCACCGGCCTG.....................................................................	21	1	653.00	545.00	1.00	13.00	1.00	93.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAA...................................................................	23	1	221.00	199.00	0.00	1.00	0.00	21.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGG....................................................................	22	1	82.00	18.00	0.00	0.00	0.00	64.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGT....................................................................	22	1	77.00	25.00	0.00	22.00	2.00	28.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAA..................................................................	24	1	70.00	56.00	1.00	4.00	0.00	9.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAT...................................................................	23	1	57.00	21.00	0.00	3.00	1.00	32.00
.....................................................................................................................................TATTGCACATTCCCCCGCCTGA....................................................................	22	2	24.50	24.00	0.00	0.00	0.50	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGC....................................................................	22	1	41.00	38.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATTCACCGGCC.......................................................................	19	1	40.00	2.00	0.00	0.00	0.00	38.00
.....................................................................................................................................TATTGCACATTCACCAGCCTGA....................................................................	22	2	12.00	12.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCT......................................................................	20	1	20.00	16.00	0.00	3.00	0.00	1.00
.....................................................................................................................................TATTGCACCTTCACCGGCCTGA....................................................................	22	1	18.00	11.00	0.00	0.00	0.00	7.00
......................................................................................................................................ATTGCACATTCACCGGCCTGA....................................................................	21	1	17.00	17.00	0.00	0.00	0.00	0.00
.................................................................................CGGACGGTATCTGCGTCAATATT.......................................................................................................................	23	1	16.00	14.00	0.00	2.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCAACGGCCTGA....................................................................	22	1	15.00	15.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGACTGA....................................................................	22	1	14.00	14.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCGCATTCACCGGCCTGA....................................................................	22	1	14.00	14.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACTCACCGGCCTGA....................................................................	22	1	13.00	12.00	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAT..................................................................	24	1	13.00	10.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATTCACCGGCCCGA....................................................................	22	1	12.00	12.00	0.00	0.00	0.00	0.00
....................................................................................................................................CTATTGCACATTCACCGGCCTGA....................................................................	23	1	12.00	11.00	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGATT..................................................................	24	1	11.00	5.00	0.00	0.00	0.00	6.00
.....................................................................................................................................TATTGCACATTCCCCGGCCTGA....................................................................	22	2	5.50	5.00	0.00	0.50	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCTGCCTGA....................................................................	22	2	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCATGA....................................................................	22	1	10.00	10.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCCCCCGCCTG.....................................................................	21	2	4.50	4.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTAT..................................................................	24	1	9.00	0.00	0.00	0.00	0.00	9.00
.....................................................................................................................................TATTGCACGTTCACCGGCCTGA....................................................................	22	1	9.00	9.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTT...................................................................	23	1	9.00	0.00	0.00	0.00	0.00	9.00
.....................................................................................................................................TACTGCACATTCACCGGCCTGA....................................................................	22	1	8.00	8.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCCGCCTGA....................................................................	22	2	4.00	3.50	0.00	0.00	0.50	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGCA...................................................................	23	1	8.00	8.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAAA.................................................................	25	1	8.00	7.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCGCCGGCCTGA....................................................................	22	2	3.50	3.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATCGCACATTCACCGGCCTGA....................................................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTTA....................................................................	22	1	7.00	6.00	0.00	0.00	0.00	1.00
.....................................................................................................................................TGTTGCACATTCACCGGCCTGA....................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACTGGCCTGA....................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
.................................................................................CGGACGGTATCTGCGTCAATAT........................................................................................................................	22	1	6.00	5.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCATATTCACCGGCCTGA....................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGTCTGA....................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGATA..................................................................	24	1	6.00	6.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCCCCAGCCTGAAAA.................................................................	25	2	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAC...................................................................	23	1	6.00	2.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTAA..................................................................	24	1	5.00	0.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TAGTGCACATTCACCGGCCTGA....................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTA...................................................................	23	1	5.00	0.00	0.00	0.00	0.00	5.00
.....................................................................................................................................CATTGCACATTCACCGGCCTGA....................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCAAATTCACCGGCCTGA....................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACAGGCCTGA....................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGTCCTGA....................................................................	22	1	5.00	2.00	0.00	1.00	0.00	2.00
.........................................................................................................................................GCACATTCACCGGCCTGA....................................................................	18	1	5.00	4.00	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTGCACATTAACCGGCCTGA....................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGACCTGA....................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATACACCGGCCTGA....................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGGCTGA....................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCCCCCGCCTGAA...................................................................	23	2	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCCG.....................................................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGAACATTCACCGGCCTGA....................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGCAA..................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAG..................................................................	24	1	4.00	3.00	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTGCACATTCxCCAGCCTGA....................................................................	21	2	1.50	1.00	0.00	0.50	0.00	0.00
.................................................................................CGGACGGTATCTGCGTCAATA.........................................................................................................................	21	1	3.00	1.00	1.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGC........................................................................	18	1	3.00	2.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCTCCAGCCTGA....................................................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGTACATTCACCGGCCTGA....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCCCCGGCCTG.....................................................................	21	2	1.50	1.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCCCATTCACCGGCCTGA....................................................................	22	1	3.00	2.00	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTACACATTCACCGGCCTGA....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAG...................................................................	23	1	3.00	2.00	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTGCACATTCATCGGCCTGA....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGAACATTCACCGGCCTGT....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGACCTG.....................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TCTTGCACATTCACCGGCCTGA....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGACT..................................................................	24	1	3.00	0.00	0.00	1.00	0.00	2.00
.....................................................................................................................................TATTGCACATTCACCGGAC.......................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCCCATTCACCGGCCTGC....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCTCATTCACCGGCCTGA....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCATCGGCCTGT....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................AATTGCACATTCACCGGCCTGA....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTCA....................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00

droEre2

TTGAAACCC----CT-----------------------------------------------AACC--CTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCT---TG------------TTAGAATATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GACTT-ACATC-A-------------------------------A------AAAG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.....................................................................................................................................TATTGCACATTCACCGGCCTGA....................................................................	22	2	459.50	429.50	0.50	0.00	29.50
.....................................................................................................................................TATTGCACATTCACCAGCCTGA....................................................................	22	4	31.75	7.00	0.50	0.00	24.25
.....................................................................................................................................TATTGCACATTCACCGGCCTG.....................................................................	21	2	52.00	36.00	0.00	0.00	16.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAA...................................................................	23	2	20.00	17.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATTCACCGGCCTTA....................................................................	22	2	14.00	14.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGT....................................................................	22	2	8.00	1.50	1.00	0.00	5.50
.....................................................................................................................................TATTGCACATTCACCAGCCTG.....................................................................	21	4	3.75	0.00	1.00	0.00	2.75
.....................................................................................................................................TATTGCACATTCACCTGCCTGA....................................................................	22	4	3.25	3.00	0.00	0.00	0.25
.....................................................................................................................................TATTGCACATTCCCCCGCCTGA....................................................................	22	4	3.25	3.25	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAT...................................................................	23	2	6.00	1.50	0.00	0.00	4.50
.....................................................................................................................................TATTGCACATTCACCCGCCTGA....................................................................	22	4	2.50	2.50	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAA..................................................................	24	2	4.00	4.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCT......................................................................	20	2	4.00	1.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGC....................................................................	22	2	3.50	3.50	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGAAT..................................................................	24	2	3.00	1.50	0.00	0.00	1.50
.....................................................................................................................................TATTACACATTCACCGGCCTGA....................................................................	22	2	3.00	2.50	0.00	0.00	0.50
.....................................................................................................................................TATTTCACATTCACCGGCCTGA....................................................................	22	2	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGTCCTGA....................................................................	22	2	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCAGCCTGT....................................................................	22	4	1.25	0.00	0.00	0.00	1.25
.....................................................................................................................................TATTGCACATTCACCAGCCTGAA...................................................................	23	4	1.25	0.00	0.25	0.00	1.00
.....................................................................................................................................TATTGCACATTCACCGGCCTCA....................................................................	22	2	2.50	2.50	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGCCCTGA....................................................................	22	2	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTCACCGGCCTGA....................................................................	22	2	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGCCCTTA....................................................................	22	1	4.00	4.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCTCCAGCCTGA....................................................................	22	4	1.00	0.75	0.00	0.00	0.25
.................................................................................CGGACGGTATCTGCGTCAATATT.......................................................................................................................	23	2	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGG....................................................................	22	2	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCGGCCTGTT...................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATTCACCTGCCTTA....................................................................	22	2	1.50	1.50	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCCCCAGCCTGAAAA.................................................................	25	4	0.75	0.50	0.00	0.00	0.25
.....................................................................................................................................TATTCCACATTCACCGGCCTGA....................................................................	22	2	1.50	1.50	0.00	0.00	0.00
.....................................................................................................................................TATTTCACATTCACCTGCCTGA....................................................................	22	2	1.50	1.50	0.00	0.00	0.00
.....................................................................................................................................TATTGCACATTCACCCGCCTG.....................................................................	21	4	0.75	0.50	0.00	0.00	0.25
.....................................................................................................................................TATTGCACATTCACCGGCCCGA....................................................................	22	2	1.50	1.00	0.00	0.00	0.50
.....................................................................................................................................TATTGCACATTCACCATCCTGA....................................................................	22	4	0.75	0.25	0.00	0.00	0.50

droEug1

AACAGAGTT----GA----------------------------------------------AATTC--CTAAAT-ATTTTTAGGCCTGTGTCTGT-TCAATATAATTA---TT------------TAAAAATATATTGCACACTCACCGGCCTGAAAAGAT-TAGG--GATAT-TCTTT-A-------------------------------A------AAAG

Size

Hit Count

Total Norm

droBia1

GTAAAAATC----GG-----TTTAAAT----------------------------------GGTTC--CGAGATAGTTTTTCGGACGGTGTTTGTGACAATATTTTAG---G-------------TTTAAAAATATTGCACATTCACCGGCCTCTAAACAT-CAAG--GGCAT-TCCTC--------------------------------------------

Size

Hit Count

Total Norm

droTak1

AATAATTCA----AA-------------------------------------TTAATTCCA---------AGATAGTTTTTCGGACGGTGTCTGCGTCAATATTTCAG---TT------------TTAAAACATATTGCACATTCACCGGCCTGAAAATAT-CAAG--GGTGT-TCCTC--------------------------------------------

Size

Hit Count

Total Norm

droEle1

CAAAAAAAAAAGA--AGGGTTTGA---------------------------TCTAAGACCT---------AGATTCTTTTTCGGACGGTATCTGCGACAATATGCGAA---C-------------TTTTAACATATTGCACATTTACCGGCCTGAAATTAT-CATG--GATAT-TCATC-A-------------------------------A------GATA

Size

Hit Count

Total Norm

droRho1

TTCAAACTA-----------------------------------------------------AGTC--CTAGGTTGTTTTTCGGACGGTATTTGTGACAATATGCTTA---AT------------TTTAGACATATTGCACATTTACCGGCCTGAAATTAA-CATG--GATAT-TCTTC-G-------------------------------A------TATT

Size

Hit Count

Total Norm

droFic1

CGTAGAACGACGA--A--------AAGAGTGTTTTTTTATTTTTTTTTATT----------TGTTT--CCGGACAGTTGTTTGGACGGAAGATGCGCCAGTATGCGGA---TT------------TTTAAGCATATTGCACATTTACCGGCCTAGTAATGC-ACTG--GCTAT-TCATC-A-------------------------------A------TTAT

Size

Hit Count

Total Norm

droKik1

GCTAAAAGT----GTA-ATTTTAG---------------------------ACTATTTTCT---------GGACCATGATTCGGACGGGATCTGTGTCAATACTTGCT---T-------------TTTATTCGTATTGCACACATACCGGCCTTATAATAT-TCAG--ACTGA-TCAAC-A-------------------------------G------AATT

Size

Hit Count

Total Norm

droAna3

AGAGAAATA----TT----------------------------------------------TGTTG--CCAGATTATCTTCAGGACGGTATTTGTGTCAATATGGATA---T-------------TTCAAACATATTGCACTTATACCGGCCTGATGATCT-CCGG--CGCTCGTCATC-T-------------------------------GTGACTAAAAG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.....................................................................................................................................TATTGCACTTATACCGGCCTGA....................................................................	22	1	3148.00	31.00	19.00	29.00	3069.00
.....................................................................................................................................TATTGCACTTATACCGGCCTG.....................................................................	21	1	299.00	8.00	6.00	5.00	280.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGAA...................................................................	23	1	235.00	0.00	2.00	1.00	232.00
.....................................................................................................................................TATTGCACTTATACCGGCCTTA....................................................................	22	1	158.00	0.00	0.00	1.00	157.00
.................................................................................AGGACGGTATTTGTGTCAATATG.......................................................................................................................	23	1	91.00	31.00	6.00	2.00	52.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGAAA..................................................................	24	1	87.00	0.00	0.00	0.00	87.00
.....................................................................................................................................TATTGCACTTATACCTGCCTGA....................................................................	22	1	66.00	2.00	0.00	0.00	64.00
.....................................................................................................................................TATTGCACTTATACCGTCCTGA....................................................................	22	1	60.00	0.00	1.00	2.00	57.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGC....................................................................	22	1	39.00	0.00	0.00	0.00	39.00
.....................................................................................................................................TATTGCACTTATACCGGCCT......................................................................	20	1	38.00	0.00	1.00	0.00	37.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGT....................................................................	22	1	34.00	2.00	0.00	2.00	30.00
.....................................................................................................................................TATTGCACTTATACCCGCCTGA....................................................................	22	1	29.00	0.00	0.00	1.00	28.00
.....................................................................................................................................TATTGCACTTATACCTGCCTTA....................................................................	22	1	18.00	0.00	0.00	0.00	18.00
.....................................................................................................................................TATTGCACTTATACCAGCCTGA....................................................................	22	1	16.00	1.00	0.00	0.00	15.00
.....................................................................................................................................TATTGCACTTATACCGCCCTGA....................................................................	22	1	16.00	0.00	0.00	0.00	16.00
.................................................................................AGGACGGTATTTGTGTCAATAT........................................................................................................................	22	1	15.00	3.00	0.00	0.00	12.00
.....................................................................................................................................TATTGCACTTATACCGGCCTCA....................................................................	22	1	14.00	0.00	0.00	0.00	14.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGAAAA.................................................................	25	1	14.00	0.00	0.00	1.00	13.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGAT...................................................................	23	1	13.00	5.00	1.00	0.00	7.00
.....................................................................................................................................TATTGCACTTATACCGGCCTTAA...................................................................	23	1	12.00	0.00	0.00	0.00	12.00
.....................................................................................................................................TATTTCACTTATACCGGCCTGA....................................................................	22	1	12.00	0.00	0.00	0.00	12.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGCA...................................................................	23	1	12.00	0.00	0.00	0.00	12.00
.................................................................................AGGACGGTATTTGTGTCAATATT.......................................................................................................................	23	1	12.00	0.00	0.00	0.00	12.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGTA...................................................................	23	1	11.00	0.00	0.00	0.00	11.00
.....................................................................................................................................TATTGCACTTATACCGTCCTTA....................................................................	22	1	11.00	0.00	0.00	0.00	11.00
.....................................................................................................................................TATTGCACTTATACCGGCC.......................................................................	19	1	9.00	0.00	0.00	0.00	9.00
.....................................................................................................................................TATTGCACTTATACCCGCCTCA....................................................................	22	1	9.00	0.00	0.00	0.00	9.00
.....................................................................................................................................TATTGCACTTATACCGGCCCGA....................................................................	22	1	9.00	0.00	0.00	0.00	9.00
.................................................................................AGGACGGTATTTGTGTCAATA.........................................................................................................................	21	1	8.00	1.00	2.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCGACCTGA....................................................................	22	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................................................TATTGCGCTTATACCGGCCTGA....................................................................	22	1	8.00	0.00	0.00	0.00	8.00
.....................................................................................................................................TATTCCACTTATACCGGCCTGA....................................................................	22	1	7.00	0.00	0.00	0.00	7.00
.....................................................................................................................................TATTGCACTTATACCGGC........................................................................	18	1	7.00	1.00	0.00	2.00	4.00
.....................................................................................................................................TATGGCACTTATACCGGCCTGA....................................................................	22	1	7.00	0.00	1.00	0.00	6.00
.....................................................................................................................................TATTGCACTTATACCCGCCTTA....................................................................	22	1	7.00	0.00	0.00	0.00	7.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGG....................................................................	22	1	7.00	0.00	0.00	0.00	7.00
.....................................................................................................................................TATTGCACTTATACCGTCCTG.....................................................................	21	1	7.00	0.00	0.00	0.00	7.00
.....................................................................................................................................CATTGCACTTATACCGGCCTGA....................................................................	22	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................................TATTGCACTTATACCTTCCTGA....................................................................	22	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................................TATTGCACTTATACCGGCCA......................................................................	20	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................................TATTGCACTTATACCGGTCTGA....................................................................	22	1	6.00	0.00	0.00	1.00	5.00
.....................................................................................................................................TATTGCACTTATATCGGCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TAGTGCACTTATACCGGCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
......................................................................................................................................ATTGCACTTATACCGGCCTGA....................................................................	21	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCCGCCTG.....................................................................	21	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATAACGGCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.................................................................................AGGACGGTATTTGTGTCAATATA.......................................................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TACTGCACTTATACCGGCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCATCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTCTACCGGCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATCGCACTTATACCGGCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGAG...................................................................	23	1	5.00	1.00	1.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCTGCCTCA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................GATTGCACTTATACCGGCCTGA....................................................................	22	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGAAC..................................................................	24	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCGTCCTGAA...................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCTGCCTG.....................................................................	21	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTATACCGGCCTT.....................................................................	21	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACTTACACCGGCCTGA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGTACTTATACCGGCCTGA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCACTTATACCGGCCCTA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCACTTATACCGGCCCG.....................................................................	21	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCACTTATACCGGACTGA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCCCTTATACCGGCCTGA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCACTTATACCGGCCTAA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCACCTATACCGGCCTGA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTACACTTATACCGGCCTGA....................................................................	22	1	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTACACTTATACCGTCCTGA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCGTCCTGT....................................................................	22	1	3.00	1.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACTTATACCGCCCTCA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGACA..................................................................	24	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCTGCCTGAA...................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.............TT----------------------------------------------TGTTG--CCAGATTATCTTC..............................................................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTAGACCGGCCTGA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTTCACTTATACCTGCCTGA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACTGGCCTGA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCGGCATGA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGATA..................................................................	24	1	3.00	0.00	0.00	2.00	1.00
.....................................................................................................................................TATTGCACTTATATCGGCCTTA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCAATTATACCGGCCTGA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTCCACTTATACCGGCCTG.....................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCGGCCTGAAG..................................................................	24	1	3.00	0.00	1.00	0.00	2.00
.....................................................................................................................................TATTGCACTTATACCGGCCTTT....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCGTCCTT.....................................................................	21	1	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................CTATTGCACTTATACCGGCCTGA....................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACTTATACCGTCCTGC....................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATAGCACTTATACCGGCCTGA....................................................................	22	1	3.00	0.00	0.00	1.00	2.00
.....................................................................................................................................TATTGCACTTATACCCGCCTGAA...................................................................	23	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................AATTGCACTTATACCGGCCTGA....................................................................	22	1	3.00	0.00	0.00	0.00	3.00

droBip1

TGAAATATT----------------------------------------------------TGTGG--CCAGATACCCTTTAGGTCGGTATTTGTGACAATATGATA-----T------------TTCAATCATATTGCACTTGTACCGGCCTGATAATAT-CTGG--CATTCGTCATC-T-------------------------------G------TGAG

Size

Hit Count

Total Norm

dp4

CATCGAGCT----GC--------------------------------------------------------TTTGATTTGTAGGCCGTGGTTCTTGCAAATACGGA------T------------TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACA-ATAG--CAACG-CCGGC-A-------------------------------ACAGCAAAGTA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.....................................................................................................................................TATTGCACTAGCCCCGGTCCA.....................................................................	21	1	219.00	70.00	109.00	40.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCAA....................................................................	22	1	65.00	19.00	36.00	10.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCC......................................................................	20	1	58.00	15.00	34.00	9.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTC.......................................................................	19	1	47.00	27.00	2.00	18.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCC.....................................................................	21	1	32.00	21.00	4.00	7.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCG......................................................................	20	1	28.00	22.00	0.00	6.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCT......................................................................	20	1	26.00	21.00	1.00	4.00	0.00
.................................................................................AGGCCGTGGTTCTTGCAAATA.........................................................................................................................	21	1	16.00	15.00	0.00	1.00	0.00
.................................................................................AGGCCGTGGTTCTTGCAAATACG.......................................................................................................................	23	1	14.00	10.00	0.00	4.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCAAA...................................................................	23	1	9.00	2.00	7.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCCC....................................................................	22	1	7.00	5.00	0.00	2.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCA......................................................................	20	1	7.00	6.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCAAAA..................................................................	24	1	5.00	1.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTTT......................................................................	20	1	5.00	2.00	0.00	3.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCT.....................................................................	21	1	4.00	4.00	0.00	0.00	0.00
.................................................................................AGGCCGTGGTTCTTGCAAAT..........................................................................................................................	20	1	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTTCG.....................................................................	21	1	3.00	1.00	0.00	2.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGGCCA.....................................................................	21	1	3.00	1.00	2.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGTTCC......................................................................	20	1	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCCA....................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGCCCA.....................................................................	21	1	2.00	1.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGT........................................................................	18	1	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCG.....................................................................	21	1	2.00	0.00	1.00	1.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCAT....................................................................	22	1	2.00	0.00	2.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTTA......................................................................	20	1	2.00	2.00	0.00	0.00	0.00
.................................................................................AGGCCGTGGTTCTTGCAAATAC........................................................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGTTCT......................................................................	20	1	2.00	2.00	0.00	0.00	0.00
.....................................................................................................................................AATTGCACTAGCCCCGGCC.......................................................................	19	2	0.50	0.00	0.50	0.00	0.00
.....................................................................................................................................TATTGCATTAGCCCCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGCC.......................................................................	19	2	0.50	0.00	0.00	0.50	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCTT.....................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCAG....................................................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................................................................................ATTGCACTAGCCCCGGTCCAA....................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTGGCCCCGGTCG......................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCTC.....................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................AATTGCACTAGCCCCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................AATTGCACTAGCCCCGGTCG......................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTGCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCAATAGCCCCGGTCCAC....................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCTCA....................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTCGCCCCGGTCCAA....................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCGCTAGCCCCGGTCCC.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACCAGCCCCGGTCCC.....................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACTAGTCCCGGCC.......................................................................	19	4	0.25	0.00	0.25	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGCCC......................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCATT...................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTA.......................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCAAA....................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTTCA.....................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGAACTAGCCCCGGTCCTA....................................................................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................................................................................ATTGCACTAGCCCCGGTCCA.....................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCTT....................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTGGCCCCGGTCC......................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGxxCTAGCCCCGGTCCAA....................................................................	20	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGGACGAGCCCCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCAC....................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCTGGTCC......................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGTTA.......................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACTAGTCCCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
....................................................................................................................................CTATTGCACTAGCCCCGGTCCAA....................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGTTCCT.....................................................................	21	1	1.00	1.00	0.00	0.00	0.00
.....................................................................................................................................TAGTGAACTAGCCCCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGACA......................................................................	20	1	1.00	0.00	0.00	1.00	0.00
....................................................................................................................................GTATTGCACTAGCGTCGG.........................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TAGTGCACTAGCCCCGGTCT......................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAACCCCGGTCCAA....................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................AATTGCACTAGTCCCGGTC.......................................................................	19	2	0.50	0.00	0.50	0.00	0.00
.....................................................................................................................................TATTGCCCTAGCCCCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTACCCCCGGCCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGGC.......................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCTGTC.......................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGGCCCGGTCCAC....................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGCCT......................................................................	20	2	0.50	0.00	0.50	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTCCCAG...................................................................	23	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCACCGATCCA.....................................................................	21	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................TATTGCACTAGCCTCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCTGTCC......................................................................	20	1	1.00	0.00	1.00	0.00	0.00
.................................................................................AGGCCGTGGTTCTTGCAAATACC.......................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................................TAGTGCACTAGCCCCGGTCCA.....................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.....................................................................................................................................TATTGCACTAGCCCCGGTTAA.....................................................................	21	1	1.00	1.00	0.00	0.00	0.00

droPer1

ACC---------------------------------------------------------------------------TTCAAGCTGGGGGATGG-GCAATACTGTGTTGTAT------------TTGAACAGTATTGCACACCCACTGGCCTGAAAGTGC-CTAC--TGCTG-GGTTC-A-------------------------------ACAACTTAATC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.....................................................................................................................................TATTGCACACCCACTGGCCTG.....................................................................	21	2	806.50	13.50	25.00	3.00	0.00	765.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGA....................................................................	22	2	240.50	17.00	141.50	2.00	1.00	79.00
.................................................................................AAGCTGGGGGATGG-GCAATACT.......................................................................................................................	22	2	132.50	130.50	1.50	0.50	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACTCC.....................................................................................................................	24	2	47.00	47.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATC.........................................................................................................................	20	2	38.50	38.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATAC........................................................................................................................	21	2	30.00	28.50	1.00	0.50	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCC.......................................................................	19	2	27.00	0.00	0.50	0.50	0.00	26.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGT....................................................................	22	2	27.00	14.00	2.00	1.50	0.00	9.50
.................................................................................AAGCTGGGGGATGG-GCAATACC.......................................................................................................................	22	2	25.50	25.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCGG.....................................................................	21	2	25.00	0.00	0.00	0.00	0.00	25.00
.................................................................................AAGCTGGGGGATGG-GCAATA.........................................................................................................................	20	2	21.50	21.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATCC........................................................................................................................	21	2	21.00	21.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGG....................................................................	22	2	18.50	0.00	0.50	0.00	0.00	18.00
.................................................................................AAGCTGGGGGATGG-GCAATACTC......................................................................................................................	23	2	16.50	16.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATT.........................................................................................................................	20	2	14.50	14.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATTC........................................................................................................................	21	2	13.00	13.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACCC......................................................................................................................	23	2	13.00	13.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAA...........................................................................................................................	18	2	12.50	12.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAAT..........................................................................................................................	19	2	12.50	11.50	1.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATCCT.......................................................................................................................	22	2	11.50	11.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGAAA..................................................................	24	2	11.00	0.00	3.50	0.00	0.00	7.50
.....................................................................................................................................TATTGCACACCCACTGGCCTGAA...................................................................	23	2	11.00	0.50	7.50	0.00	0.00	3.00
.................................................................................AAGCTGGGGGATGG-GCAATTCT.......................................................................................................................	22	2	10.00	10.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACTCT.....................................................................................................................	24	2	10.00	10.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACCCT.....................................................................................................................	24	2	9.50	9.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATTCC.......................................................................................................................	22	2	9.00	9.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATTT........................................................................................................................	21	2	8.50	8.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCT......................................................................	20	2	8.00	3.50	3.50	0.00	0.00	1.00
.................................................................................AAGCTGGGGGATGG-GCAATACTG......................................................................................................................	23	2	7.50	7.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACCT......................................................................................................................	23	2	7.50	7.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATTTT.......................................................................................................................	22	2	6.50	6.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATCT........................................................................................................................	21	2	6.50	6.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGAAC..................................................................	24	2	5.50	0.00	0.00	0.00	0.00	5.50
.................................................................................AAGCTGGGGGATGG-GCAT...........................................................................................................................	18	2	5.00	5.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATAA........................................................................................................................	21	2	5.00	4.50	0.50	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCTT.....................................................................	21	2	4.50	0.50	0.00	0.00	0.00	4.00
.................................................................................AAGCTGGGGGATGG-GCTT...........................................................................................................................	18	3	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACA.......................................................................................................................	22	2	4.00	2.50	1.00	0.00	0.50	0.00
.................................................................................AAGCTGGGGGATGG-GCAATAAA.......................................................................................................................	22	2	3.50	2.00	1.50	0.00	0.00	0.00
..................................................................................AGCTGGGGGATGG-GCAATACTG......................................................................................................................	22	2	3.50	3.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCATT..........................................................................................................................	19	2	3.00	3.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAAA..........................................................................................................................	19	2	3.00	2.00	0.00	0.00	0.00	1.00
.................................................................................AAGCTGGGGGATGG-GCAATCCTT......................................................................................................................	23	2	3.00	3.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCCG.....................................................................	21	2	2.50	0.00	0.50	0.00	0.00	2.00
.................................................................................AAGCTGGGGGATGG-GCAATACTCTC....................................................................................................................	25	2	2.50	2.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCATTC.........................................................................................................................	20	2	2.50	2.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACTT......................................................................................................................	23	2	2.50	2.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATCTT.......................................................................................................................	22	2	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGTAAA.................................................................	25	2	2.00	0.00	0.00	0.00	0.00	2.00
.................................................................................AAGCTGGGGGATGG-GCAATTCTT......................................................................................................................	23	2	2.00	2.00	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCGCTGGCCTG.....................................................................	21	2	2.00	0.00	0.00	0.00	0.00	2.00
.................................................................................AAGCTGGGGGATGG-GCATTT.........................................................................................................................	20	2	2.00	2.00	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCTA...........................................................................................................................	18	2	1.50	1.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCATTCCT.......................................................................................................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
..................................................................................AGCTGGGGGATGG-GCAATACTC......................................................................................................................	22	2	1.50	0.50	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTGCACACCCACTCGCCTG.....................................................................	21	2	1.50	0.00	0.00	0.00	0.00	1.50
.................................................................................AAGCTGGGGGATTG-GCAATACT.......................................................................................................................	22	2	1.50	0.50	0.00	0.00	0.00	1.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGAT...................................................................	23	2	1.50	0.00	0.50	0.00	0.00	1.00
.................................................................................AAGCTGGGGGATGG-GCAATCG........................................................................................................................	21	2	1.50	1.00	0.50	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAAAA.........................................................................................................................	20	2	1.50	1.00	0.50	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GCAATACTTTC....................................................................................................................	25	2	1.50	1.50	0.00	0.00	0.00	0.00
.................................................................................AAGCTGGGGGATGG-GTAATCC........................................................................................................................	21	2	1.50	1.50	0.00	0.00	0.00	0.00
.....................................................................................................................................TATTGCACACCCACTGGCCTGAC...................................................................	23	2	1.50	0.00	0.00	0.00	0.00	1.50
..................................................................................AGCTGGGGGATGG-GCAATACTCC.....................................................................................................................	23	2	1.50	1.50	0.00	0.00	0.00	0.00

droWil1

TAATTTATA----------------------------------------------------GGCTT--CGGG------------------GTTGTTGCAAAATGGTTT---ATTCTAA-----TAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTGAACA--TCCCG-G-------------------------------G------TGGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCT....................................................................	22	1	2632.00	17.00	2585.00	13.00	17.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTC.....................................................................	21	1	744.00	11.00	716.00	4.00	13.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCT......................................................................	20	1	679.00	11.00	649.00	6.00	13.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCTA...................................................................	23	1	55.00	0.00	53.00	1.00	1.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCA....................................................................	22	1	15.00	0.00	15.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCTT...................................................................	23	1	12.00	1.00	11.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCTGCCTCT....................................................................	22	1	11.00	0.00	11.00	0.00	0.00
....................................................................................................................................ATATTGCACCTTTTCCGGCCTC.....................................................................	22	1	11.00	0.00	11.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTA.....................................................................	21	1	11.00	0.00	11.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCC.......................................................................	19	1	11.00	0.00	8.00	0.00	3.00
.....................................................................................................................................TATTGCACCTTTTCCGTCCTCT....................................................................	22	1	11.00	0.00	11.00	0.00	0.00
........A----------------------------------------------------GGCTT--CGGG------------------GTTGTTGCAAAATG.......................................................................................................................	24	1	9.00	0.00	5.00	1.00	3.00
....................................................................................................................................ATATTGCACCTTTTCCGGCCT......................................................................	21	1	8.00	0.00	8.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCATCT....................................................................	22	1	7.00	0.00	7.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCTAAA.................................................................	25	1	7.00	0.00	6.00	0.00	1.00
.....................................................................................................................................TATTGCACCTTTTCAGGCCTCT....................................................................	22	1	7.00	0.00	7.00	0.00	0.00
....................................................................................................................................CTATTGCACCTTTTCCGGCCTCT....................................................................	23	1	7.00	0.00	7.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGCCCTCT....................................................................	22	1	6.00	0.00	6.00	0.00	0.00
......................................................................................................................................ATTGCACCTTTTCCGGCCTCT....................................................................	21	1	5.00	0.00	5.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTT.....................................................................	21	1	5.00	0.00	5.00	0.00	0.00
.....................................................................................................................................TATTGCACCCTTTCCGGCCTC.....................................................................	21	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCCTTTCCGGCCTCT....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTAT....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCTGGCCTCT....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCC....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCxTTTCCGGCCTCT....................................................................	21	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCAGCCTCT....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTCCCGGCCTCT....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACATTTTCCGGCCTCT....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCTGCCTC.....................................................................	21	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACCTCTTCCGGCCTCT....................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCGCCTTTTCCGGCCTCT....................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCATC.....................................................................	21	1	3.00	1.00	2.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGACTCT....................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTGCACTTTTTCCGGCCTCT....................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTCCCGGCCTC.....................................................................	21	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTTCACCTTTTCCGGCCTCT....................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTGAACCTTTTCCGGCCTCT....................................................................	22	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCTC...................................................................	23	1	3.00	0.00	3.00	0.00	0.00
.....................................................................................................................................TATTGCACCTTTTCCGGCCTCG....................................................................	22	1	3.00	3.00	0.00	0.00	0.00
.....................................................................................................................................TACTGCACCTTTTCCGGCCTCT....................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droVir3

GAAAAACTA----GT----------------------------------------------GCGTCCGCATGACCATTTTAAGGACGGTATTTGTGACAATATGTGCA---GT-TAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGA-ACCG--TGCTC-TCTTC-G-------------------------------A------TATA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.....................................................................................................................................TATTGCACATCTCCCGGCCTA.....................................................................	21	2	756.00	15.50	4.50	545.00	185.50	5.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTAT....................................................................	22	2	630.50	5.00	3.00	575.50	44.50	2.50
.....................................................................................................................................TATTGCACATCTCCCGGCCT......................................................................	20	2	465.00	10.00	2.50	374.50	74.50	3.50
.................................................................................AGGACGGTATTTGTGACAATATG.......................................................................................................................	23	1	746.00	14.00	1.00	163.00	560.00	8.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAA....................................................................	22	2	285.00	14.00	4.00	231.50	35.00	0.50
.................................................................................AGGACGGTATTTGTGACAATAT........................................................................................................................	22	1	508.00	3.00	0.00	27.00	465.00	13.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAA...................................................................	23	2	123.50	2.00	0.50	99.00	20.00	2.00
.................................................................................AGGACGGTATTTGTGACAATA.........................................................................................................................	21	1	113.00	0.00	0.00	0.00	113.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATA...................................................................	23	2	50.50	0.00	0.00	40.50	9.00	1.00
.....................................................................................................................................TATTGCACATCTCCCGGCC.......................................................................	19	2	35.50	0.00	0.50	3.50	31.00	0.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAAA..................................................................	24	2	26.50	0.00	0.00	23.00	3.00	0.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAA..................................................................	24	2	20.00	0.00	0.50	18.00	1.00	0.50
.....................................................................................................................................TATTGCACATCTCCCCGCCTA.....................................................................	21	2	19.50	0.00	0.00	19.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAAA.................................................................	25	2	19.50	0.00	0.00	18.50	1.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATC...................................................................	23	2	19.00	2.00	0.00	3.50	13.50	0.00
.................................................................................AGGACGGTATTTGTGACAATC.........................................................................................................................	21	1	31.00	0.00	0.00	0.00	31.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTC.....................................................................	21	2	15.00	3.00	0.00	5.50	6.00	0.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTCT....................................................................	22	2	15.00	0.00	0.00	14.50	0.50	0.00
.................................................................................AGGACGGTATTTGTGACAATATA.......................................................................................................................	23	1	29.00	0.00	0.00	1.00	27.00	1.00
.................................................................................AGGACGGTATTTGTGACAATATCC......................................................................................................................	24	1	28.00	0.00	0.00	0.00	28.00	0.00
.....................................................................................................................................TATTGCACATCTCCCCGCCTAT....................................................................	22	2	13.00	0.00	0.00	13.00	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATGT......................................................................................................................	24	1	25.00	0.00	0.00	10.00	15.00	0.00
.....................................................................................................................................TATTGCACATCTCCCTGCCTA.....................................................................	21	2	12.50	0.00	0.00	12.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAAAA.................................................................	25	1	24.00	0.00	0.00	21.00	2.00	1.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATT...................................................................	23	2	11.00	0.50	0.00	9.50	1.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGTCCTAT....................................................................	22	2	10.50	0.00	0.00	10.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTT.....................................................................	21	2	10.50	0.00	0.00	2.50	8.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTCA....................................................................	22	2	10.00	0.00	0.00	10.00	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATT.......................................................................................................................	23	1	20.00	0.00	0.00	14.00	6.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATC.......................................................................................................................	23	1	19.00	0.00	0.00	0.00	19.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCC......................................................................	20	2	9.50	0.00	0.00	3.00	6.50	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAC....................................................................	22	2	9.00	0.00	0.00	5.00	4.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTG.....................................................................	21	2	8.50	0.00	0.00	3.50	5.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGTCCTA.....................................................................	21	2	8.50	0.00	0.00	8.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGC........................................................................	18	2	7.50	0.00	0.00	0.50	7.00	0.00
.....................................................................................................................................TATTGCACATCTCCCCGCCT......................................................................	20	2	7.00	0.50	0.00	6.50	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATGA......................................................................................................................	24	1	13.00	0.00	0.00	5.00	8.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATGCCC....................................................................................................................	26	1	13.00	0.00	0.00	0.00	13.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCG......................................................................	20	2	6.00	0.50	0.00	0.50	5.00	0.00
.....................................................................................................................................TATTGCACATCTCCCTGCCTAT....................................................................	22	2	6.00	0.00	0.00	6.00	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATG...................................................................	23	2	6.00	0.00	0.00	1.50	4.50	0.00
.....................................................................................................................................TATTGCACATCTCCCCGCCTAA....................................................................	22	2	5.50	0.00	0.00	5.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGTCCT......................................................................	20	2	5.50	0.00	0.00	5.50	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAAT..........................................................................................................................	20	1	11.00	0.00	0.00	0.00	10.00	1.00
.....................................................................................................................................TATTGCACATCTCCCAGCCTA.....................................................................	21	2	5.00	0.00	0.00	5.00	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGCCCTA.....................................................................	21	2	5.00	0.50	0.50	4.00	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAA...........................................................................................................................	19	1	10.00	0.00	0.00	0.00	10.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATGCC.....................................................................................................................	25	1	10.00	0.00	0.00	0.00	10.00	0.00
.................................................................................AGGACGGTATTTGTGACA............................................................................................................................	18	1	10.00	0.00	0.00	0.00	10.00	0.00
.....................................................................................................................................TATTGCACATCTCCCTGCCT......................................................................	20	2	5.00	0.00	0.00	5.00	0.00	0.00
.................................................................................AGGACGGTATTTTTGACAATATG.......................................................................................................................	23	1	9.00	0.00	0.00	5.00	4.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAG....................................................................	22	2	4.50	0.00	0.00	1.00	3.50	0.00
.....................................................................................................................................TATTTCACATCTCCCGGCCTAT....................................................................	22	2	4.50	0.00	0.00	4.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAG...................................................................	23	2	4.50	0.00	0.00	3.00	1.50	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAAAA................................................................	26	2	4.50	0.00	0.00	4.50	0.00	0.00
.....................................................................................................................................TATTGCACGTCTCCCGGCCTAT....................................................................	22	2	4.50	0.00	0.00	4.50	0.00	0.00
.................................................................................AGGACGGTATTTTTGACAATA.........................................................................................................................	21	1	8.00	0.00	0.00	0.00	8.00	0.00
.................................................................................AGGACGGTATTTTTGACAATAT........................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAT...................................................................	23	2	4.00	0.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTACA...................................................................	23	2	3.50	0.00	0.00	3.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCA......................................................................	20	2	3.50	0.00	0.50	3.00	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCAGCCTAT....................................................................	22	2	3.50	0.00	0.00	3.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTCAA...................................................................	23	2	3.50	0.00	0.00	3.50	0.00	0.00
.....................................................................................................................................TATTTCACATCTCCCGGCCTA.....................................................................	21	2	3.00	0.00	0.00	3.00	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATGTG.....................................................................................................................	25	1	6.00	4.00	0.00	2.00	0.00	0.00
.................................................................................AGGACGGTCTTTGTGACAATATG.......................................................................................................................	23	1	6.00	0.00	0.00	1.00	5.00	0.00
.................................................................................AGGACGGTATTTGTGACAATAAA.......................................................................................................................	23	1	6.00	0.00	0.00	1.00	5.00	0.00
.................................................................................AGGACGGTATTTGTGACAATCC........................................................................................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGTCCTAA....................................................................	22	2	2.50	0.00	0.00	2.50	0.00	0.00
.....................................................................................................................................TATTGCGCATCTCCCGGCCT......................................................................	20	2	2.50	0.00	0.00	2.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCTGCCTAA....................................................................	22	2	2.50	0.00	0.00	2.50	0.00	0.00
.....................................................................................................................................TATTGCACCTCTCCCGGCCTA.....................................................................	21	2	2.50	0.00	0.00	0.50	2.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAAC..................................................................	24	2	2.50	0.00	0.00	1.50	1.00	0.00
....................................................................................................................................CTATTGCACATCTCCCGGCCTAT....................................................................	23	2	2.50	0.00	0.00	2.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGACCT......................................................................	20	2	2.50	1.00	0.00	1.50	0.00	0.00
.................................................................................AGGACGGTATTTGTTACAATATG.......................................................................................................................	23	1	5.00	0.00	0.00	5.00	0.00	0.00
.....................................................................................................................................TATTGCACCTCTCCCGGCCTAT....................................................................	22	2	2.50	0.00	0.00	2.00	0.50	0.00
.....................................................................................................................................TATTGCACATCTCCCGCCCT......................................................................	20	2	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................AGGGCGGTATTTGTGACAATATG.......................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTCTA...................................................................	23	2	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATGAA.....................................................................................................................	25	1	4.00	0.00	0.00	2.00	2.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAAAAA................................................................	26	1	4.00	0.00	0.00	4.00	0.00	0.00
.....................................................................................................................................TATTGCGCATCTCCCGGCCTA.....................................................................	21	2	2.00	0.00	0.00	1.50	0.50	0.00
.................................................................................AGGACTGTATTTGTGACAATATG.......................................................................................................................	23	1	4.00	0.00	0.00	1.00	3.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATCA..................................................................	24	2	2.00	0.50	0.00	1.50	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGCCCTAT....................................................................	22	2	2.00	0.00	0.00	2.00	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCCAT....................................................................	22	2	2.00	0.00	0.00	1.50	0.50	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAATC..................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
.................................................................................AGGACGTTATTTGTGACAATATG.......................................................................................................................	23	1	4.00	0.00	0.00	3.00	1.00	0.00
.....................................................................................................................................TCTTGCACATCTCCCGGCCTAT....................................................................	22	2	2.00	0.00	0.00	2.00	0.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCGA.....................................................................	21	2	2.00	0.00	0.00	2.00	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAATATGC......................................................................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCCA.....................................................................	21	2	1.50	0.00	0.00	1.50	0.00	0.00
.................................................................................AGGACGGTATTTGTGACAATAA........................................................................................................................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
.................................................................................AGGACGGTATTTGTCACAATATG.......................................................................................................................	23	1	3.00	0.00	0.00	2.00	1.00	0.00
......................................................................................................................................ATTGCACATCTCCCGGCCTA.....................................................................	20	2	1.50	0.00	0.00	1.00	0.50	0.00
.................................................................................AGGACGGTATTTGTGACAATATTC......................................................................................................................	24	1	3.00	0.00	0.00	0.00	3.00	0.00
.................................................................................AGGACGGTATTTGTGACCC...........................................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00	0.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAAC.................................................................	25	2	1.50	0.00	0.00	1.50	0.00	0.00
.................................................................................AGGACGGGATTTGTGACAATAT........................................................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.................................................................................AGGACGGTATTTGTGACC............................................................................................................................	18	1	3.00	0.00	0.00	0.00	3.00	0.00

droMoj3

AAACGAAAAATGT--C--------AA-----------------------------------ATTTT--CAGCTGCGTTTGCAGGACGGTATTTGTGACAATATGAATT---ATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACA-GTTG--TGAGC-CCGTCGATTTAAATGATTTGTGTATTTAAAATAAATTTTC-----ACCA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.....................................................................................................................................TATTGCACATCTCCCGGCCTAT....................................................................	22	2	1307.00	28.50	8.00	5.00	1265.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTA.....................................................................	21	2	1111.00	54.00	8.50	10.50	1038.00
.....................................................................................................................................TATTGCACATCTCCCGGCCT......................................................................	20	2	599.00	94.00	22.00	14.00	469.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAC....................................................................	22	2	347.50	9.00	1.50	2.00	335.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATA...................................................................	23	2	137.00	1.50	0.00	0.00	135.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTACA...................................................................	23	2	111.00	1.00	1.50	1.00	107.50
.................................................................................AGGACGGTATTTGTGACAATATG.......................................................................................................................	23	1	174.00	19.00	2.00	0.00	153.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAAA.................................................................	25	1	97.00	19.00	3.00	0.00	75.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAA..................................................................	24	2	45.00	0.50	0.50	0.50	43.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTAA....................................................................	22	2	40.50	1.00	0.50	0.50	38.50
.................................................................................AGGACGGTATTTGTGACAATAT........................................................................................................................	22	1	78.00	1.00	0.00	1.00	76.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTCT....................................................................	22	2	25.00	0.00	0.00	0.00	25.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAA...................................................................	23	2	12.50	2.00	0.00	0.50	10.00
.....................................................................................................................................TATTGCACACCTCCCGGCCTA.....................................................................	21	2	11.50	0.00	0.00	0.00	11.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAAAA................................................................	26	1	20.00	6.00	0.00	0.00	14.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTC.....................................................................	21	2	10.00	3.00	0.50	0.00	6.50
.....................................................................................................................................TATTGCACACCTCCCGGCCTAT....................................................................	22	2	9.50	0.50	0.00	0.00	9.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATT...................................................................	23	2	9.50	0.50	0.50	0.00	8.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTT.....................................................................	21	2	8.00	2.50	0.50	0.00	5.00
.....................................................................................................................................TATTGCACATCTCCCCGCCTA.....................................................................	21	2	7.50	0.00	0.00	0.00	7.50
.....................................................................................................................................TATTGCACATCTCCCGGCC.......................................................................	19	2	7.50	1.00	0.50	0.00	6.00
.....................................................................................................................................TATTGCACATCTCCCTGCCTA.....................................................................	21	2	6.50	0.00	0.50	0.00	6.00
.....................................................................................................................................TATTGCACATCTCCCAGCCTAT....................................................................	22	2	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTACAA..................................................................	24	2	5.00	0.50	0.00	0.00	4.50
.....................................................................................................................................TATTGCACATCTCCCCGCCTAT....................................................................	22	2	4.50	0.00	0.00	0.00	4.50
......................................................................................................................................ATTGCACATCTCCCGGCCTA.....................................................................	20	2	4.50	2.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCACATCGCCCGGCCTAT....................................................................	22	2	4.50	0.00	0.00	0.00	4.50
....................................................................................................................................CTATTGCACATCTCCCGGCCTAT....................................................................	23	2	4.50	0.00	0.00	0.00	4.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTTT....................................................................	22	2	4.50	1.00	0.00	0.00	3.50
.....................................................................................................................................TATTGCACATCTCCCTGCCTAT....................................................................	22	2	4.00	0.00	0.00	0.00	4.00
.....................................................................................................................................TATTGCACATCTCCCAGCCTA.....................................................................	21	2	4.00	0.50	0.00	0.00	3.50
.....................................................................................................................................TAGTGCACATCTCCCGGCCTA.....................................................................	21	2	3.50	0.00	0.50	0.00	3.00
.....................................................................................................................................TATTGCACATCTCCCGGACTA.....................................................................	21	2	3.50	0.00	0.00	0.00	3.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTACAAAA................................................................	26	2	3.50	2.00	0.50	0.50	0.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTAG....................................................................	22	2	3.50	1.50	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATC...................................................................	23	2	3.50	2.50	0.00	0.00	1.00
.....................................................................................................................................TATTGCGCATCTCCCGGCCTAT....................................................................	22	2	3.50	0.00	0.00	0.00	3.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAAA..................................................................	24	2	3.50	0.00	0.00	0.00	3.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTCC....................................................................	22	2	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATATCCCGGCCTAT....................................................................	22	2	3.00	0.00	0.00	0.00	3.00
....................................................................................................................................ATATTGCACATCTCCCGGCCT......................................................................	21	2	3.00	0.00	0.50	0.00	2.50
.....................................................................................................................................TATTGCACATCTCCCGGCATAT....................................................................	22	2	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATCTCCAGGCCTA.....................................................................	21	2	3.00	0.00	0.50	0.00	2.50
.................................................................................AGGACGGTATTTGTGACAATATGAA.....................................................................................................................	25	1	6.00	0.00	0.00	0.00	6.00
.....................................................................................................................................TATTGCACACCTCCCGGCCTATA...................................................................	23	2	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACGTCTCCCGGCCTAT....................................................................	22	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCACATCTCCCGGACTAT....................................................................	22	2	2.50	0.00	0.50	0.00	2.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATG...................................................................	23	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCACATCTCCCTGCCT......................................................................	20	2	2.50	0.50	0.00	0.50	1.50
.....................................................................................................................................TATTGCACATCTCTCGGCCT......................................................................	20	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCACCTCTCCCGGCCTAT....................................................................	22	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCAAATCTCCCGGCCTA.....................................................................	21	2	2.50	0.00	0.00	0.00	2.50
.................................................................................AGGACGGTATTTGTGACAATATGA......................................................................................................................	24	1	5.00	0.00	0.00	0.00	5.00
.................................................................................AGGACGGTATTTGTGACAATATA.......................................................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
.....................................................................................................................................TATTGCACATCTCCCAGCCT......................................................................	20	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TGTTGCACATCTCCCGGCCTAT....................................................................	22	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCACATCTACCGGCCTAT....................................................................	22	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCACATCTCCCCGCCTAC....................................................................	22	2	2.50	0.00	0.00	0.00	2.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTAAAAA.................................................................	25	2	2.50	0.50	0.50	0.00	1.50
......................................................................................................................................ATTGCACATCTCCCGGCCTAC....................................................................	21	2	2.50	1.50	0.00	0.00	1.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTACAAA.................................................................	25	2	2.00	1.00	0.50	0.00	0.50
.....................................................................................................................................TATTGCGCATCTCCCGGCCTA.....................................................................	21	2	2.00	0.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTCCCGGTCTAT....................................................................	22	2	2.00	0.50	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGC........................................................................	18	2	2.00	0.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTTCCGGCCT......................................................................	20	2	2.00	0.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTCCCGGCCA......................................................................	20	2	2.00	0.00	0.50	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGCCCA.....................................................................	21	2	2.00	0.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTCTCGGCCTAT....................................................................	22	2	2.00	0.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTCCCGGCTTAT....................................................................	22	2	2.00	0.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTCCTGGCCTA.....................................................................	21	2	2.00	0.00	0.00	0.00	2.00
.................................................................................AGGACGGTATTTGTGACAATATGC......................................................................................................................	24	1	3.00	0.00	0.00	0.00	3.00
.................................................................................AGGACGGTATTTGTGACAATA.........................................................................................................................	21	1	3.00	1.00	0.00	0.00	2.00
.....................................................................................................................................TATTGCACATCTCCCGGCCGA.....................................................................	21	2	1.50	0.00	0.00	0.00	1.50
.................................................................................AGGACGGTATTTGTGACAATATAAA.....................................................................................................................	25	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTATTAA.................................................................	25	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACGTCTCCCGGCCTA.....................................................................	21	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGTCCTA.....................................................................	21	2	1.50	0.50	0.00	0.00	1.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTACT...................................................................	23	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCACGGCCTA.....................................................................	21	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTACG...................................................................	23	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATCGCACATCTCCCGGCCT......................................................................	20	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTGT....................................................................	22	2	1.50	0.50	0.00	0.00	1.00
.....................................................................................................................................TATTGCATATCTCCCGGCCTAT....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCAAATCTCCCGGCCTAT....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATATCCCGGCCTA.....................................................................	21	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTATCA..................................................................	24	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTACC...................................................................	23	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCCGCCTC.....................................................................	21	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACACCTCCCGGCCTATAA..................................................................	24	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACACCTCCCGGCCT......................................................................	20	2	1.50	0.00	0.00	0.00	1.50
.................................................................................AGGACGGCATTTGTGACAATAT........................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATCTCCCAGCCTAC....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTACACATCTCCCGGCCTAT....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACCTCTCCCGGCCTAC....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.................................................................................AGGACGGTATTTGTGACAATATGAAA....................................................................................................................	26	1	3.00	0.00	0.00	0.00	3.00
.....................................................................................................................................TATTGCACATCTCCCGGCCTTC....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTCTAA..................................................................	24	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGGCCTATAG..................................................................	24	2	1.50	0.50	0.00	0.00	1.00
.....................................................................................................................................TACTGCACATCTCCCGGCCTAT....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGACCTAT....................................................................	22	2	1.50	0.00	0.00	0.00	1.50
.....................................................................................................................................TATTGCACATCTCCCGTCCTAC....................................................................	22	2	1.50	0.00	0.00	0.00	1.50

droGri2

AAATTTGCA----GT----------------------------------------------------------TCGTGTTTA-----------------GTGTTTTTTCC-CG------------CTTAAGCATCTTGCAATTTATATGGCTTGCAGTTAT-CTGC--ATTAA-CCATT-T-------------------------------T------CAGG

Size

Hit Count

Total Norm

V109
Male body

Generated: 04/20/2012 at 05:21:19 EDT

dme-mir-311

chr2R:16471382-16471465 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup