Possible Orthologs for dme-mir-311

droSim1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:15132667-15132782 -	89.06	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCA--TTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGAGTCAATATTTTTTTTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAAAAA Size Hit Count Total Norm V044 Embryo M023 Head M024 Male body M025 Embryo ....................................................................TATTGCACATTCACCGGCCTGA.......................... 22 1 35021.00 5438.00 118.00 1798.00 27667.00 ....................................................................TATTGCACATTCACCGGCCTGG.......................... 22 1 7314.00 19.00 25.00 451.00 6819.00 ....................................................................TATTGCACATTCACCGGCCTG........................... 21 1 4493.00 644.00 17.00 764.00 3068.00 ....................................................................TATTGCACATTCACCGGCCTGAA......................... 23 1 2828.00 321.00 4.00 231.00 2272.00 ....................................................................TATTGCACATTCACCGGCC............................. 19 1 1860.00 0.00 7.00 151.00 1702.00 ....................................................................TATTGCACATTCACCGGCCTGAAA........................ 24 1 1662.00 69.00 1.00 64.00 1528.00 .............................CGGACGGTATATGAGTCAATATT................................................................ 23 1 446.00 81.00 0.00 47.00 318.00 ....................................................................TATTGCACATTCACCGGCCTGAT......................... 23 1 391.00 15.00 4.00 87.00 285.00 ....................................................................TATTGCACATTCACCGGCCTGT.......................... 22 1 259.00 42.00 1.00 141.00 75.00 .....................................................................ATTGCACATTCACCGGCCTGA.......................... 21 1 234.00 73.00 1.00 12.00 148.00 ....................................................................TATTGCACATTCACCGGCCTGAC......................... 23 1 166.00 4.00 0.00 31.00 131.00 ....................................................................TATTGCACATTCACCGGCCTGAAC........................ 24 1 147.00 1.00 0.00 4.00 142.00 .............................CGGACGGTATATGAGTCAATAT................................................................. 22 1 132.00 23.00 0.00 14.00 95.00 ....................................................................TATTGCACATTCACCGGCCGG........................... 21 1 114.00 1.00 0.00 27.00 86.00 ....................................................................TATTGCACATTCACCGGC.............................. 18 1 104.00 1.00 1.00 6.00 96.00 ....................................................................TATTGCACATTCACCGGCCTGAAAA....................... 25 1 87.00 7.00 0.00 3.00 77.00 ....................................................................TATTTCACATTCACCGGCCTGA.......................... 22 1 86.00 0.00 0.00 2.00 84.00 .....................................................................ATTGCACATTCACCGGCCTGAA......................... 22 1 83.00 6.00 0.00 7.00 70.00 ....................................................................TATTGCACATTCACCGGCCTGC.......................... 22 1 69.00 27.00 1.00 15.00 26.00 ....................................................................TATTGCACATTCACCGGCCT............................ 20 1 58.00 18.00 0.00 16.00 24.00 .....................................................................ATTGCACATTCACCGGCCTG........................... 20 1 53.00 11.00 1.00 11.00 30.00 ....................................................................TATTGCACATTCACCGGCCTT........................... 21 1 48.00 1.00 0.00 3.00 44.00 ....................................................................TATTGCACATTCACCGGAC............................. 19 1 47.00 0.00 0.00 6.00 41.00 ....................................................................TATTCCACATTCACCGGCCTGA.......................... 22 1 47.00 3.00 0.00 0.00 44.00 ....................................................................TATTGCACATTCACCGGCCTGTA......................... 23 1 45.00 8.00 0.00 32.00 5.00 ....................................................................TATTGCACATTCACCGGCCTGAG......................... 23 1 43.00 5.00 0.00 4.00 34.00 .....................................................................ATTGCACATTCACCGGCCTGAAA........................ 23 1 42.00 0.00 0.00 2.00 40.00 ....................................................................TATTGCGCATTCACCGGCCTGA.......................... 22 1 41.00 14.00 0.00 1.00 26.00 .....................................................................ATTGCACATTCACCGGCCTGG.......................... 21 1 38.00 2.00 0.00 3.00 33.00 ........................................................................GCACATTCACCGGCCTGA.......................... 18 1 38.00 3.00 0.00 1.00 34.00 ....................................................................TATTGCACATTCACCGGCCCGA.......................... 22 1 38.00 6.00 0.00 1.00 31.00 ....................................................................TATTxCACATTCACCGGCCTGA.......................... 21 1 32.00 0.00 0.00 0.00 32.00 ....................................................................TATTGCACATTCACCGGCCTGTT......................... 23 1 31.00 0.00 0.00 31.00 0.00 ....................................................................TATTGCACATTCACCGGCCTTA.......................... 22 1 30.00 13.00 0.00 0.00 17.00 .............................CGGACGGTATATGATTCAATATT................................................................ 23 1 29.00 0.00 0.00 0.00 29.00 ....................................................................TATTGCACATTCACCGGACTGA.......................... 22 1 28.00 23.00 0.00 2.00 3.00 ....................................................................TATTGCACATTCGCCGGCCTGA.......................... 22 1 27.00 8.00 0.00 1.00 18.00 ....................................................................TATTGCACATTCACCGGCCTGAAG........................ 24 1 27.00 3.00 0.00 1.00 23.00 ....................................................................TATTGCACATTCACCGGCCTGAAT........................ 24 1 26.00 10.00 0.00 3.00 13.00 ....................................................................TATTGCACATTCACCGGCCTGATA........................ 24 1 25.00 3.00 0.00 3.00 19.00 ....................................................................TATTGCACATTCAACGGCCTGA.......................... 22 1 24.00 19.00 0.00 2.00 3.00 ....................................................................TATTGCACATTCACCGACCTGA.......................... 22 1 23.00 9.00 0.00 0.00 14.00 ....................................................................TATTGCACACTCACCGGCCTGA.......................... 22 1 22.00 11.00 0.00 1.00 10.00 .............................CGGACGGTATATGAGTCAATATTA............................................................... 24 1 21.00 11.00 0.00 0.00 10.00 ....................................................................TATTTCACATTCACCGGCCTGG.......................... 22 1 21.00 0.00 0.00 1.00 20.00 ....................................................................TATTGCACATTCACTGGCCTGA.......................... 22 1 21.00 9.00 0.00 2.00 10.00 ....................................................................TATTGCACATTCACAGGCCTGA.......................... 22 1 20.00 7.00 0.00 2.00 11.00 ....................................................................TATTGCACATTCACCGGTCTGA.......................... 22 1 20.00 8.00 1.00 0.00 11.00 ....................................................................TATTGCACGTTCACCGGCCTGA.......................... 22 1 19.00 7.00 0.00 1.00 11.00 ....................................................................TATTGCACATTCACCAGCCTGA.......................... 22 1 19.00 9.00 0.00 0.00 10.00 ....................................................................TATTGCACATTCACCGGCCCG........................... 21 1 18.00 2.00 0.00 0.00 16.00 ....................................................................TATTGCACATTCACCTGCCTGA.......................... 22 1 18.00 11.00 0.00 1.00 6.00 ....................................................................TATTGCATATTCACCGGCCTGA.......................... 22 1 18.00 6.00 0.00 0.00 12.00 ....................................................................TATTTCACATTCACCGGCCTGAA......................... 23 1 17.00 0.00 0.00 0.00 17.00 .....................................................................ATTGCACATTCACCGGCCTGAT......................... 22 1 17.00 1.00 0.00 3.00 13.00 ....................................................................TATTGCACCTTCACCGGCCTGA.......................... 22 1 17.00 6.00 0.00 1.00 10.00 ....................................................................TATTCCACATTCACCGGCCTGG.......................... 22 1 17.00 0.00 0.00 0.00 17.00 .............................CGGACGGTATATGACTCAATATT................................................................ 23 1 17.00 0.00 0.00 1.00 16.00 ....................................................................TATTGCACATTCACCGGCCTTG.......................... 22 1 16.00 1.00 0.00 0.00 15.00 ....................................................................TATTGCACATTCACCGGCCTCA.......................... 22 1 15.00 8.00 0.00 1.00 6.00 ....................................................................TATTGCACATTCACCGGCCTGTAA........................ 24 1 15.00 0.00 0.00 10.00 5.00 ....................................................................TATTACACATTCACCGGCCTGA.......................... 22 1 15.00 2.00 0.00 1.00 12.00 ....................................................................TATTGCAAATTCACCGGCCTGA.......................... 22 1 15.00 12.00 0.00 1.00 2.00 ....................................................................TATTGCACATTCACCGGCCTGACA........................ 24 1 15.00 1.00 0.00 2.00 12.00 ...................................................................CTATTGCACATTCACCGGCCTGA.......................... 23 1 14.00 11.00 0.00 0.00 3.00 ....................................................................TACTGCACATTCACCGGCCTGA.......................... 22 1 14.00 5.00 0.00 0.00 9.00 ....................................................................TATTGCACATTCACCGGCCTGAAAC....................... 25 1 14.00 0.00 0.00 0.00 14.00 ....................................................................TATTGCACATTCACCGTCCTG........................... 21 1 13.00 3.00 0.00 1.00 9.00 .....................................................................ATTGCACATTCACCGGCC............................. 18 1 13.00 0.00 0.00 2.00 11.00 ....................................................................CATTGCACATTCACCGGCCTGA.......................... 22 1 13.00 6.00 1.00 0.00 6.00 ....................................................................TATTGCACATCCACCGGCCTGA.......................... 22 1 13.00 6.00 0.00 0.00 7.00 ....................................................................TATTGCACATTCACCGGCCTGATT........................ 24 1 13.00 1.00 0.00 5.00 7.00 ....................................................................TATTGCACATTCATCGGCCTGA.......................... 22 1 12.00 3.00 0.00 1.00 8.00 .............................CGGACGGTATATGAGTCAAT................................................................... 20 1 12.00 0.00 0.00 2.00 10.00 ....................................................................TGTTGCACATTCACCGGCCTGA.......................... 22 1 12.00 5.00 0.00 0.00 7.00 ....................................................................TATTxCACATTCACCGGCCTGAA......................... 22 1 12.00 0.00 0.00 2.00 10.00 ....................................................................TATTGTACATTCACCGGCCTGA.......................... 22 1 12.00 5.00 0.00 0.00 7.00 ....................................................................TATTGCACATTCACCGTCCTGA.......................... 22 1 12.00 9.00 0.00 0.00 3.00 ....................................................................TATCGCACATTCACCGGCCTGA.......................... 22 1 12.00 5.00 0.00 1.00 6.00 ....................................................................TATTGCACATTTACCGGCCTGA.......................... 22 1 11.00 5.00 0.00 1.00 5.00 .............................CGGACGGTATATGAGTCAATATTAA.............................................................. 25 1 11.00 6.00 0.00 0.00 5.00 .............................CGGACGGTATATGATTCAATAT................................................................. 22 1 11.00 0.00 0.00 1.00 10.00 ....................................................................TATTGCACATTCACCCGCCTGA.......................... 22 1 11.00 11.00 0.00 0.00 0.00 ....................................................................TATTGCACATTCCCCGGCCTGA.......................... 22 1 10.00 10.00 0.00 0.00 0.00 ....................................................................TATTGCACATTCACCGGCCTAA.......................... 22 1 10.00 4.00 0.00 1.00 5.00 ....................................................................TATTGCACATTCACCTGCCTG........................... 21 1 10.00 1.00 0.00 3.00 6.00 .............................CGGACGGTATATGAGTCAATA.................................................................. 21 1 10.00 3.00 0.00 1.00 6.00 ....................................................................TATTGCCCATTCACCGGCCTGA.......................... 22 1 9.00 2.00 0.00 1.00 6.00 ....................................................................TATTGGACATTCACCGGCCTGA.......................... 22 1 9.00 2.00 1.00 1.00 5.00 ....................................................................TATTTCACATTCACCGGCC............................. 19 1 9.00 0.00 0.00 1.00 8.00 ....................................................................TATTCCACATTCACCGGCCTGAA......................... 23 1 9.00 0.00 0.00 1.00 8.00 .............................CGGACGGTATATGACTCAATAT................................................................. 22 1 9.00 0.00 0.00 1.00 8.00 ..................................................................TATATTGCACATTCACCGGCCTGA.......................... 24 1 8.00 2.00 0.00 1.00 5.00 ....................................................................TATTGCACATTCACCGGCCTGCA......................... 23 1 8.00 7.00 0.00 1.00 0.00 ....................................................................TATTGCACATTCACCGGCCCGG.......................... 22 1 8.00 0.00 0.00 0.00 8.00 ....................................................................TATTTCACATTCACCGGCCTG........................... 21 1 8.00 0.00 0.00 3.00 5.00 ....................................................................TATTGCACATTCACCGCCCTGA.......................... 22 1 8.00 3.00 0.00 0.00 5.00 ....................................................................TCTTGCACATTCACCGGCCTGA.......................... 22 1 8.00 8.00 0.00 0.00 0.00 ....................................................................TATTGCACATTCACCGGGCTGA.......................... 22 1 8.00 5.00 0.00 0.00 3.00 ....................................................................TATTGCACATTCACCCGCCTG........................... 21 1 8.00 4.00 0.00 1.00 3.00 ....................................................................TATTxCACATTCACCGGCCTGG.......................... 21 1 8.00 0.00 0.00 0.00 8.00

droSec1 - 3 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	super_1:14025591-14025696 -	78.95	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG ---------GAAATTTCTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAGCATCGAAAAA Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ..................................................................TATTGCACATTCACCGGCCTGA.......................... 22 3 1024.00 15.00 899.67 109.33 ..................................................................TATTGCACATTCACCGGCCTG........................... 21 3 99.67 2.00 88.67 9.00 ..................................................................TATTGCACATTCACCGGCCTGAA......................... 23 3 68.33 0.67 61.67 6.00 ..................................................................TATTGCACATTCACCGGCCTGAAA........................ 24 3 43.33 0.00 41.00 2.33 ...................................................................ATTGCACATTCACCGGCCTGA.......................... 21 3 17.00 0.00 16.00 1.00 ..................................................................TATTGCACATTCACCGGCCTGAT......................... 23 3 13.33 0.33 11.33 1.67 ..................................................................TATTGCACATTCACCGGCCTGAAT........................ 24 3 12.00 1.33 10.33 0.33 ..................................................................TATTGCACATTCACCGGCCT............................ 20 3 9.33 0.33 8.33 0.67 ..................................................................TATTGCACATTCACCGGCCTGT.......................... 22 3 8.67 2.33 5.00 1.33 ..................................................................TATTGCACATTCACCGGCCTGAAAA....................... 25 3 7.00 0.33 6.33 0.33 ..................................................................TATTGCACATTCACCGGTCTGA.......................... 22 3 4.00 0.00 3.33 0.67 ..................................................................TATTGCACATTCACCGGC.............................. 18 3 3.67 0.33 3.33 0.00 ..................................................................TATTGCACATTCACCGGCTTGA.......................... 22 3 3.67 0.33 3.33 0.00 ..................................................................TATTCCACATTCACCGGCCTGA.......................... 22 3 3.00 0.00 3.00 0.00 .............................CGGACGGTATATGAGTCAATGTT.............................................................. 23 3 2.67 0.33 1.67 0.67 ..................................................................TATTGCACATTCATCGGCCTGA.......................... 22 3 2.67 0.00 2.67 0.00 ..................................................................TATTGCATATTCACCGGCCTGA.......................... 22 3 2.67 0.00 2.67 0.00 ....................................................................TTGCACATTCACCGGCCTGA.......................... 20 3 2.33 0.00 2.33 0.00 ..................................................................TATTGxxCATTCACCGGCCTGA.......................... 20 3 2.33 0.00 2.33 0.00 ..................................................................TATTGCACATTCACCGACCTGA.......................... 22 3 2.33 0.00 2.33 0.00 ..................................................................TATTGCGCATTCACCGGCCTGA.......................... 22 3 2.33 0.00 2.33 0.00 ..................................................................TATTGCACATTCACCGCCCTGA.......................... 22 3 2.00 0.00 1.67 0.33 ..................................................................TATTGCACATTCACCGGCCTGTAT........................ 24 3 2.00 2.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGACA........................ 24 3 1.67 0.00 1.67 0.00 ..................................................................TATTGCACATTCACCGGCCTGAG......................... 23 3 1.67 0.00 1.67 0.00 ..................................................................TATTGCACATTCACCGGCCTGAAC........................ 24 3 1.67 0.33 1.33 0.00 ..................................................................TATTGCACATTCATCGGCCTGAA......................... 23 3 1.67 0.00 1.67 0.00 ...................................................................ATTGCACATTCACCGGCCTG........................... 20 3 1.67 0.00 1.67 0.00 ..................................................................TATTGCACATTCACCGGCCTGAAAT....................... 25 3 1.67 0.33 1.33 0.00 ..................................................................TATTGCACGTTCACCGGCCTGA.......................... 22 3 1.67 0.00 1.33 0.33 ..................................................................TATTGCACATTCACCGGCCTGG.......................... 22 3 1.67 0.00 1.67 0.00 ..................................................................TATTGCACATTCACCGTCCTGA.......................... 22 3 1.33 0.00 0.33 1.00 ..................................................................TATTGCACACTCACCGGCCTGA.......................... 22 3 1.33 0.00 1.33 0.00 ..................................................................TATTGCACATTCACCGGCCTGAAAAA...................... 26 3 1.33 0.00 1.33 0.00 ..................................................................TATTGCACATACACCGGCCTGA.......................... 22 3 1.33 0.00 1.33 0.00 ..................................................................TATTGCCCATTCACCGGCCTGA.......................... 22 3 1.33 0.00 1.33 0.00 ..................................................................TACTGCACATTCACCGGCCTGA.......................... 22 3 1.33 0.00 1.33 0.00 ..................................................................TATTGCACATTCACCTGCCTGA.......................... 22 3 1.33 0.00 0.67 0.67 ..................................................................TATTGCACATTCACCGGCCTGAC......................... 23 3 1.33 0.00 1.33 0.00 ..................................................................TATTTCACATTCACCGGCCTGA.......................... 22 3 1.33 0.00 1.00 0.33 ..................................................................TATTGCACATTCACCGGCCTGATA........................ 24 3 1.33 0.33 0.67 0.33 ..................................................................TATTGCACATCCACCGGCCTGA.......................... 22 3 1.00 0.00 1.00 0.00 .................................................................CTATTGCACATTCACCGGCCTGA.......................... 23 3 1.00 0.00 1.00 0.00 ..................................................................TATTGCACATTCACCGGCCCGA.......................... 22 3 1.00 0.00 1.00 0.00 ..................................................................TATTGCATATTCACCGGCCTG........................... 21 3 1.00 0.00 1.00 0.00 ...................................................................ATTGCACATTCACCGGCCTGAA......................... 22 3 1.00 0.33 0.67 0.00 ..................................................................TATTGTACATTCACCGGCCTGA.......................... 22 3 1.00 0.00 1.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGC.......................... 22 3 1.00 0.00 1.00 0.00 ..................................................................TATTGCACATTCATCGGCCTGAAA........................ 24 3 1.00 0.00 1.00 0.00 ..................................................................TATTGCACATTCACTGGCCTGA.......................... 22 3 1.00 0.00 1.00 0.00 ..................................................................AATTGCACATTCACCGGCCTGA.......................... 22 3 1.00 0.00 1.00 0.00 ..................................................................TATTGCACATTAACCGGCCTGA.......................... 22 3 1.00 0.00 1.00 0.00 ..................................................................TATTGCACATTCACCGGTCTGAA......................... 23 3 1.00 0.00 1.00 0.00
3	super_1:14025739-14025854 -	54.0	TGAAAAATCGAAATT---TCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGA-ATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG TAAATAATGGGAATTAAGTTTAAAGCGTT-TTGGTTCGTCACAAGG-GCAATTCTGCATTTTTAAACTTGTATTGCACTTGAGACGGCCGAATTACTTTAAAAAGAATCATCATTGAG Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ......................................................................TATTGCACTTGAGACGGCCGA........................... 21 4 622.00 80.25 490.75 51.00 ......................................................................TATTGCACTTGAGACGGCCGAA.......................... 22 4 326.75 50.00 240.00 36.75 ......................................................................TATTGCACTTGAGACGGCCGAAA......................... 23 4 295.75 17.25 251.50 27.00 ......................................................................TATTGCACTTGAGACGGCCGAAAA........................ 24 4 93.25 5.50 80.25 7.50 ......................................................................TATTGCACTTGAGACGGCCG............................ 20 4 70.50 11.00 54.75 4.75 ...............................TGGTTCGTCACAAGG-GCAATT................................................................. 21 4 49.00 12.75 32.25 4.00 ...............................TGGTTCGTCACAAGG-GCAATTCT............................................................... 23 4 48.50 12.50 28.50 7.50 ...............................TGGTTCGTCACAAGG-GCAATTC................................................................ 22 4 47.25 12.00 30.50 4.75 ......................................................................TATTGCACTTGAGACGGCCGAAT......................... 23 4 41.75 20.50 20.25 1.00 ......................................................................TATTGCACTTGAGACGGCCGAT.......................... 22 4 38.25 17.00 18.50 2.75 ......................................................................TATTGCACTTGAGACGGCCGAAAAA....................... 25 4 19.50 1.00 16.50 2.00 ...............................TGGTTCGTCACAAGG-GCAAT.................................................................. 20 4 19.25 6.25 12.50 0.50 ......................................................................TATTGCACTTGAGACGGCCGATA......................... 23 4 15.50 8.50 5.50 1.50 ......................................................................TATTGCACTTGAGACGGCCGATT......................... 23 4 8.75 7.75 0.75 0.25 ......................................................................TATTGCACTTGAGACGGCCGAAAT........................ 24 4 8.25 5.00 2.75 0.50 ......................................................................TATTGCACTTGAGACGGCCGT........................... 21 4 8.25 3.50 4.00 0.75 ...............................TGGTTCGTCACAAGG-GCAATTCTGCA............................................................ 26 4 5.50 2.25 2.00 1.25 ...............................TGGTTCGTCACAAGG-GCAA................................................................... 19 4 5.00 2.50 2.25 0.25 ......................................................................TATTGCACTTGAGACGGC.............................. 18 4 5.00 0.00 4.00 1.00 ......................................................................TATTGCACTTGAGACGGCCGAAG......................... 23 4 4.50 0.50 4.00 0.00 ...............................TGGTTCGTCACAAGG-GCAATTT................................................................ 22 4 4.50 3.50 1.00 0.00 ......................................................................TATTGCACTTGAGACGGCCGATAT........................ 24 4 4.25 3.75 0.25 0.25 ......................................................................TATTGCACTTGAGACGGCC............................. 19 4 4.25 0.75 2.75 0.75 ......................................................................TATTGCACTTGAGACGGCCGAAC......................... 23 4 3.75 1.00 2.25 0.50 ...............................TGGTTCGTCACAAGG-GCAATTCA............................................................... 23 4 3.50 0.25 2.75 0.50 .......................................................................ATTGCACTTGAGACGGCCGA........................... 20 4 3.25 0.50 2.25 0.50 .......................................................................ATTGCACTTGAGACGGCCGAAA......................... 22 4 3.00 0.25 2.00 0.75 ......................................................................TATTGCACTTGAGACGGCCGATTT........................ 24 4 2.75 2.50 0.25 0.00 ......................................................................TATTGCACTTGAGATGGCCGA........................... 21 4 2.75 0.25 2.50 0.00 ......................................................................TATTGCACTTGAGACGGCCGTT.......................... 22 4 2.75 1.00 1.25 0.50 ......................................................................TATTGCACTTGAGACGGCCGAC.......................... 22 4 2.75 0.50 2.25 0.00 ......................................................................TATTGCACTTGAGACGGCCGTTT......................... 23 4 2.50 2.25 0.00 0.25 .......................................................................ATTGCACTTGAGACGGCCGAA.......................... 21 4 2.50 0.50 2.00 0.00 ......................................................................TATTGCACTTGAGACGGCCGAATT........................ 24 4 2.50 2.25 0.00 0.25 ......................................................................TATTGCACTTGAGATGGCCGAA.......................... 22 4 2.25 0.00 2.00 0.25 ......................................................................TATTGTACTTGAGACGGCCGA........................... 21 4 2.25 0.00 2.25 0.00 ......................................................................TATTGCATTTGAGACGGCCGAA.......................... 22 4 2.00 0.25 1.75 0.00 ......................................................................TATTGCACTTGAGACGGCCGAG.......................... 22 4 2.00 0.50 1.25 0.25 .......................................................................ATTGCACTTGAGACGGCCGAAT......................... 22 4 2.00 1.00 0.75 0.25 ......................................................................TATTGCACTTGAGGCGGCCGA........................... 21 4 2.00 0.25 1.75 0.00 ........................................................................TTGCACTTGAGACGGCCGA........................... 19 4 2.00 0.00 2.00 0.00 ......................................................................TATTGCACTTGAGACGGCCGACA......................... 23 4 1.75 0.00 1.50 0.25 ......................................................................TATTGCACTTGAGACGGCCGTA.......................... 22 4 1.75 1.25 0.50 0.00 ......................................................................TATTGCACTTGAGACGGCTGA........................... 21 4 1.75 1.00 0.75 0.00 ......................................................................TATTGCACTTGAGACGGCCTGA.......................... 22 4 1.75 0.00 1.75 0.00 ......................................................................TATTGCACTTGAGCCGGCCGA........................... 21 4 1.75 0.75 1.00 0.00 ......................................................................TATTGCACTTGAGAAGGCCGA........................... 21 4 1.50 0.00 1.25 0.25 ......................................................................TATTGCACTTGAGACAGCCGAA.......................... 22 4 1.50 0.00 1.25 0.25 ...............................TGGTTCGTCACAAGG-GCAATTA................................................................ 22 4 1.50 0.75 0.75 0.00 ......................................................................TATTGCACCTGAGACGGCCGA........................... 21 4 1.50 0.00 1.50 0.00 ......................................................................TATTGCATTTGAGACGGCCGA........................... 21 4 1.50 0.00 1.50 0.00 ......................................................................TATTGCACTTGAGAAGGCCGAAA......................... 23 4 1.50 0.25 1.25 0.00 ......................................................................TCTTGCACTTGAGACGGCCGA........................... 21 4 1.25 0.00 1.00 0.25 ......................................................................TATTGCACTTGAGACGACCGA........................... 21 4 1.25 0.00 1.00 0.25 ......................................................................TATTGCACTTGAGACGGTA............................. 19 4 1.25 1.25 0.00 0.00 ......................................................................TATTGCATTTGAGACGGCCGAAA......................... 23 4 1.25 0.00 1.25 0.00 ......................................................................TATTGCACTTGAGACGGTCGA........................... 21 4 1.25 0.25 1.00 0.00 ......................................................................TATTGCACTTGAGACGGCCGAATTT....................... 25 4 1.25 1.25 0.00 0.00 ......................................................................TATTGCACTTGAGACGGTT............................. 19 4 1.25 1.25 0.00 0.00 ...............................TGGTTCGTCACAAGG-GCAATTCTG.............................................................. 24 4 1.25 0.50 0.75 0.00 ......................................................................TATTGCACTTGAGACGGCCTAAA......................... 23 4 1.25 0.00 0.75 0.50 ...............................TGGTTTGTCACAAGG-GCAATT................................................................. 21 4 1.25 0.00 1.25 0.00 ......................................................................TATTGCACTTGAGATGGCCGAAA......................... 23 4 1.00 0.00 0.50 0.50 ......................................................................TATTGCACTTGAGACTGCCGA........................... 21 4 1.00 0.25 0.50 0.25 ......................................................................TATTGCGCTTGAGACGGCCGAAA......................... 23 4 1.00 0.00 1.00 0.00 ......................................................................TATTGCACTTGAGACGGCTGAAA......................... 23 4 1.00 0.75 0.25 0.00 ......................................................................TATTGCACTTGAGACGGCCGC........................... 21 4 1.00 0.25 0.75 0.00 ......................................................................TATTGCACTTGAGACGGCAGA........................... 21 4 1.00 0.75 0.25 0.00 ...............................TGGTTCGTCACAAGG-GCACTT................................................................. 21 4 1.00 0.75 0.25 0.00 ......................................................................TATTCCACTTGAGACGGCCGAA.......................... 22 4 1.00 0.25 0.50 0.25 ......................................................................TATTGCACTTGAGACGGCCGAACT........................ 24 4 1.00 0.75 0.25 0.00 ...............................TGGTTCGTCACAAGG-GCAATTAA............................................................... 23 4 1.00 0.00 1.00 0.00 ......................................................................TATTGCACTTGAGACAGCCGA........................... 21 4 1.00 0.00 1.00 0.00 ......................................................................TATTGCACTTGGGACGGCCGA........................... 21 4 1.00 0.00 0.75 0.25 ...............................TGGTTCGTCACAAGG-GCAATTCC............................................................... 23 4 1.00 0.25 0.75 0.00 ...............................TGGTTCGTCACAAGG-GCAATTCTGC............................................................. 25 4 1.00 0.00 1.00 0.00 ......................................................................TATTGCACTTGAGACGGCGGA........................... 21 4 1.00 1.00 0.00 0.00 ......................................................................TATTGCACTTGAGACGGCCAAAA......................... 23 4 1.00 0.00 0.75 0.25 ......................................................................TATTGCACTTGAGACGGCCGAATA........................ 24 4 0.75 0.75 0.00 0.00 ...............................TGGTTCGTCACAAGG-GCAATTTT............................................................... 23 4 0.75 0.75 0.00 0.00 ......................................................................TATTGCACTTGAGACGGCCGTAT......................... 23 4 0.75 0.75 0.00 0.00 ......................................................................TATTGCACTTGAGACGGCCGATTTAT...................... 26 4 0.75 0.75 0.00 0.00 ......................................................................TATTGCACTTGAGACGCCCGAA.......................... 22 4 0.75 0.50 0.25 0.00 ........................................................................TTGCACTTGAGACGGCCG............................ 18 4 0.75 0.00 0.75 0.00 ........................................................................TTGCACTTGAGACGGCCGAAA......................... 21 4 0.75 0.00 0.75 0.00 ......................................................................TATTTCACTTGAGACGGCCGAAA......................... 23 4 0.75 0.00 0.75 0.00 ...............................TGGTTCGTCACAAGG-GCA.................................................................... 18 4 0.75 0.25 0.50 0.00 ......................................................................TATTGCACTAGAGACGGCCGA........................... 21 4 0.75 0.00 0.75 0.00 ......................................................................TATTGCACTTGAGACGGCCGG........................... 21 4 0.75 0.00 0.75 0.00 ......................................................................TATTGCACTTGAGACGGCAGAA.......................... 22 4 0.75 0.50 0.00 0.25 ......................................................................TATTGCACTTGAGACGGCCGATTA........................ 24 4 0.75 0.75 0.00 0.00 ......................................................................TATTGCACTTGAGTCGGCCGA........................... 21 4 0.75 0.00 0.75 0.00 ......................................................................TATTGCACTTGAGACCGCCGA........................... 21 4 0.75 0.00 0.50 0.25 ......................................................................TATTGCACTTAAGACGGCCGAA.......................... 22 4 0.75 0.00 0.25 0.50 ......................................................................TATTGCACTTGAGACGGCCGATATA....................... 25 4 0.75 0.75 0.00 0.00 ......................................................................TATTGCACTTGAGCCGGCCGAA.......................... 22 4 0.75 0.00 0.50 0.25 ......................................................................TATTGCACTTGAGACGGCCGAACA........................ 24 4 0.75 0.25 0.50 0.00 ...............................TGGTTCGTCACAAGG-GCAATA................................................................. 21 4 0.75 0.50 0.00 0.25 ......................................................................TATTGCACTTGAGACGGCCAAA.......................... 22 4 0.75 0.00 0.50 0.25 ......................................................................TATTGCACTTGAGACGGTCGAAA......................... 23 4 0.75 0.00 0.75 0.00 ......................................................................TATTGCACTTGAGACGGCCGAATAA....................... 25 4 0.75 0.00 0.75 0.00
2	super_1:14025472-14025570 -	47.12	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATAT-TTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG AAACAT-------------AAACATTTGCAGGACGGGTCGTGTGTCAGTGTATTTACTTCTTAACTATATTGCACACTTCCCGGCCTTTAAATGTCCAATGTT----TCAACTTT Size Hit Count Total Norm V113 Male body V114 Embryo V115 Head ...................................................................TATTGCACACTTCCCGGCCTTT.......................... 22 2 207.50 5.00 174.50 28.00 ...................................................................TATTGCACACTTCCCGGCCTT........................... 21 2 107.50 2.50 93.00 12.00 ...................................................................TATTGCACACTTCCCGGCCT............................ 20 2 37.50 3.50 32.50 1.50 ...................................................................TATTGCACACTTCCCGGCCTTTAA........................ 24 2 14.00 0.00 13.00 1.00 ...................................................................TATTGCACACTTCCCGGCCTTTA......................... 23 2 12.50 1.00 10.00 1.50 ...................................................................TATTGCACACTTCCCGGCCTTA.......................... 22 2 6.00 0.00 3.50 2.50 .............................AGGACGGGTCGTGTGTCAGTGTA............................................................... 23 2 5.50 2.50 1.00 2.00 ...................................................................TATTGCACACTTCTCGGCCTTT.......................... 22 2 5.00 0.00 5.00 0.00 ...................................................................TATTGCACACTTCCCGGCCTTTAAA....................... 25 2 3.50 0.00 3.50 0.00 ...................................................................TATTGCACACTTCCCGGTCTTT.......................... 22 2 3.00 0.00 3.00 0.00 ...................................................................TATTGCACACTTCCCGGCCTTTT......................... 23 2 3.00 1.00 2.00 0.00 ...................................................................TATTGCACACTTCCCGGCTTTT.......................... 22 2 2.00 0.00 2.00 0.00 ...................................................................TATTGCACACTTCCCGGCCTTAA......................... 23 2 2.00 0.00 2.00 0.00 .............................AGGACGGGTCGTGTGTCAGTGT................................................................ 22 2 1.50 0.50 0.50 0.50 ...................................................................TATTGCACACTTCCCGGCCTA........................... 21 2 1.50 0.00 1.50 0.00 ...................................................................TATTGCACACTTCCCGGCTTT........................... 21 2 1.50 0.00 1.50 0.00 .....................................................................TTGCACACTTCCCGGCCTTT.......................... 20 2 1.00 0.00 1.00 0.00 ...................................................................TATTGCACACTTCCCGGCCTTTAAAAA..................... 27 2 1.00 0.00 1.00 0.00 ...................................................................TATTGCACACTTCCCGGCC............................. 19 2 1.00 0.00 1.00 0.00 ...................................................................TATTGCACACTTCCCAGCCTTT.......................... 22 2 1.00 0.00 0.50 0.50 ...................................................................TATTGCACACTTCCTGGCCTTT.......................... 22 2 1.00 0.00 0.50 0.50 ...................................................................TATTGCACACTTCCCGCCCTTT.......................... 22 2 1.00 0.00 1.00 0.00 ...................................................................TATTGxxCACTTCCCGGCCTTT.......................... 20 2 1.00 0.00 1.00 0.00 ...................................................................TATTGCACACTTCTCGGCCTT........................... 21 2 1.00 0.00 1.00 0.00 ...................................................................TATTGCATACTTCCCGGCCT............................ 20 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGACCTTT.......................... 22 2 0.50 0.00 0.00 0.50 ...................................................................TCTTGCACACTTCCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCCGCCTT........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCCTTT......................... 23 2 0.50 0.00 0.50 0.00 .............................AGGACGTGTCGTGTGTCAGTG................................................................. 21 2 0.50 0.50 0.00 0.00 ...................................................................TATTGCACACTTCCCGGCCTTTAGA....................... 25 2 0.50 0.50 0.00 0.00 ...................................................................TATTGCACACTTCCCGGCCTTC.......................... 22 2 0.50 0.00 0.00 0.50 ...................................................................TATTGCACACTTCCCGCCCTTTG......................... 23 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCTTTAG........................ 24 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACGCTTCCCGGCCTTTA......................... 23 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCGCACTTCCCGGCCTTTA......................... 23 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCCGCCTTTAA........................ 24 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCCTTA......................... 23 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACATTTCCCGGCCTTTAAA....................... 25 2 0.50 0.00 0.00 0.50 ...................................................................TATTCCACACTTCCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACGCTTCCCGGCCTT........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGGCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ....................................................................ATTGCACACTTCCCGGCCTT........................... 20 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACATTTCCCGGCCTTTAA........................ 24 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACATTTCCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGxxCACTTCCCGGCCTTTAAA....................... 23 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCAGCCTT........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCGCACTTCCCGTCCT............................ 20 2 0.50 0.00 0.50 0.00 .....................................................................TTGCACACTTCCCGGCCTT........................... 19 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGTCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGTCCTTTA......................... 23 2 0.50 0.00 0.50 0.00 ...................................................................TCTTGCGCACTTCCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTACACACTTCCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACTCTTCCCGGCCT............................ 20 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCCCACCTCCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGTCT............................ 20 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCCGCCTC........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCGCACTTCCCGGCCTT........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCTCT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCTCGGCCTTA.......................... 22 2 0.50 0.00 0.50 0.00 .....................................................................TTGCACACTTCCCGGCCTTTA......................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGGACACTTCCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................GATTGCACACTTCCCGGCCTT........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCA............................ 20 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTCCCCGGCCT............................ 20 5 0.20 0.20 0.00 0.00 ...................................................................TATTGCACACTTCCCGGTT............................. 19 2 0.50 0.00 0.00 0.50 ...................................................................TATTGCACACTTCCCGGTCTT........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCTTTAAAA...................... 26 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCTCGGCCTTTAAAA...................... 26 2 0.50 0.00 0.50 0.00 ...........................GCAGGACGGGTCGTGTGTCAG................................................................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCC............................ 20 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCTG........................... 21 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCTGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACACTTCCCGGCCTTTATA....................... 25 2 0.50 0.50 0.00 0.00 .............................AGGACGGGTCGTGTGTCAGTG................................................................. 21 2 0.50 0.00 0.00 0.50 ....................................................................ATTGCACACTTCCCGGCCTTTAA........................ 23 2 0.50 0.00 0.50 0.00 .............................AGGACGGGTCGTGTGTCAGTGTT............................................................... 23 2 0.50 0.00 0.50 0.00 ...................................................................TATTGCACATTTACCGGCCT............................ 20 5 0.20 0.00 0.20 0.00 ...................................................................TATTGCACACTTTCCGGCCTTT.......................... 22 2 0.50 0.00 0.50 0.00

droYak2 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	chr2R:12724807-12724923 +	77.73	TGAAAA---ATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG TTTAAAAATATCTCACTTTCTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACTTGCATCGAAAAG Size Hit Count Total Norm V046 Embryo V052 Head V120 Male body V058 Head M026 Head .....................................................................TATTGCACATTCACCGGCCTGA.......................... 22 1 6252.00 5878.00 14.00 42.00 11.00 307.00 .....................................................................TATTGCACATTCACCGGCCTG........................... 21 1 653.00 545.00 1.00 13.00 1.00 93.00 .....................................................................TATTGCACATTCACCGGCCTGAA......................... 23 1 221.00 199.00 0.00 1.00 0.00 21.00 .....................................................................TATTGCACATTCACCGGCCTGG.......................... 22 1 82.00 18.00 0.00 0.00 0.00 64.00 .....................................................................TATTGCACATTCACCGGCCTGT.......................... 22 1 77.00 25.00 0.00 22.00 2.00 28.00 .....................................................................TATTGCACATTCACCGGCCTGAAA........................ 24 1 70.00 56.00 1.00 4.00 0.00 9.00 .....................................................................TATTGCACATTCACCGGCCTGAT......................... 23 1 57.00 21.00 0.00 3.00 1.00 32.00 .....................................................................TATTGCACATTCCCCCGCCTGA.......................... 22 2 24.50 24.00 0.00 0.00 0.50 0.00 .....................................................................TATTGCACATTCACCGGCCTGC.......................... 22 1 41.00 38.00 0.00 0.00 0.00 3.00 .....................................................................TATTGCACATTCACCGGCC............................. 19 1 40.00 2.00 0.00 0.00 0.00 38.00 .....................................................................TATTGCACATTCACCAGCCTGA.......................... 22 2 12.00 12.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCT............................ 20 1 20.00 16.00 0.00 3.00 0.00 1.00 .....................................................................TATTGCACCTTCACCGGCCTGA.......................... 22 1 18.00 11.00 0.00 0.00 0.00 7.00 ......................................................................ATTGCACATTCACCGGCCTGA.......................... 21 1 17.00 17.00 0.00 0.00 0.00 0.00 ................................CGGACGGTATCTGCGTCAATATT.............................................................. 23 1 16.00 14.00 0.00 2.00 0.00 0.00 .....................................................................TATTGCACATTCAACGGCCTGA.......................... 22 1 15.00 15.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGACTGA.......................... 22 1 14.00 14.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCGCATTCACCGGCCTGA.......................... 22 1 14.00 14.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACACTCACCGGCCTGA.......................... 22 1 13.00 12.00 0.00 0.00 0.00 1.00 .....................................................................TATTGCACATTCACCGGCCTGAAT........................ 24 1 13.00 10.00 0.00 0.00 0.00 3.00 .....................................................................TATTGCACATTCACCGGCCCGA.......................... 22 1 12.00 12.00 0.00 0.00 0.00 0.00 ....................................................................CTATTGCACATTCACCGGCCTGA.......................... 23 1 12.00 11.00 0.00 0.00 0.00 1.00 .....................................................................TATTGCACATTCACCGGCCTGATT........................ 24 1 11.00 5.00 0.00 0.00 0.00 6.00 .....................................................................TATTGCACATTCCCCGGCCTGA.......................... 22 2 5.50 5.00 0.00 0.50 0.00 0.00 .....................................................................TATTGCACATTCACCTGCCTGA.......................... 22 2 5.00 5.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCATGA.......................... 22 1 10.00 10.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCCCCCGCCTG........................... 21 2 4.50 4.50 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGTAT........................ 24 1 9.00 0.00 0.00 0.00 0.00 9.00 .....................................................................TATTGCACGTTCACCGGCCTGA.......................... 22 1 9.00 9.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGTT......................... 23 1 9.00 0.00 0.00 0.00 0.00 9.00 .....................................................................TACTGCACATTCACCGGCCTGA.......................... 22 1 8.00 8.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCCGCCTGA.......................... 22 2 4.00 3.50 0.00 0.00 0.50 0.00 .....................................................................TATTGCACATTCACCGGCCTGCA......................... 23 1 8.00 8.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGAAAA....................... 25 1 8.00 7.00 0.00 1.00 0.00 0.00 .....................................................................TATTGCACATTCGCCGGCCTGA.......................... 22 2 3.50 3.50 0.00 0.00 0.00 0.00 .....................................................................TATCGCACATTCACCGGCCTGA.......................... 22 1 7.00 7.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTTA.......................... 22 1 7.00 6.00 0.00 0.00 0.00 1.00 .....................................................................TGTTGCACATTCACCGGCCTGA.......................... 22 1 6.00 6.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACTGGCCTGA.......................... 22 1 6.00 6.00 0.00 0.00 0.00 0.00 ................................CGGACGGTATCTGCGTCAATAT............................................................... 22 1 6.00 5.00 0.00 1.00 0.00 0.00 .....................................................................TATTGCATATTCACCGGCCTGA.......................... 22 1 6.00 6.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGTCTGA.......................... 22 1 6.00 6.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGATA........................ 24 1 6.00 6.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCCCCAGCCTGAAAA....................... 25 2 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGAC......................... 23 1 6.00 2.00 0.00 0.00 0.00 4.00 .....................................................................TATTGCACATTCACCGGCCTGTAA........................ 24 1 5.00 0.00 0.00 0.00 0.00 5.00 .....................................................................TAGTGCACATTCACCGGCCTGA.......................... 22 1 5.00 5.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGTA......................... 23 1 5.00 0.00 0.00 0.00 0.00 5.00 .....................................................................CATTGCACATTCACCGGCCTGA.......................... 22 1 5.00 5.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCAAATTCACCGGCCTGA.......................... 22 1 5.00 5.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACAGGCCTGA.......................... 22 1 5.00 5.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGTCCTGA.......................... 22 1 5.00 2.00 0.00 1.00 0.00 2.00 .........................................................................GCACATTCACCGGCCTGA.......................... 18 1 5.00 4.00 0.00 0.00 0.00 1.00 .....................................................................TATTGCACATTAACCGGCCTGA.......................... 22 1 5.00 5.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGACCTGA.......................... 22 1 5.00 5.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATACACCGGCCTGA.......................... 22 1 4.00 4.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGGCTGA.......................... 22 1 4.00 4.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCCCCCGCCTGAA......................... 23 2 2.00 2.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCCG........................... 21 1 4.00 4.00 0.00 0.00 0.00 0.00 .....................................................................TATTGAACATTCACCGGCCTGA.......................... 22 1 4.00 4.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGCAA........................ 24 1 4.00 4.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGAAG........................ 24 1 4.00 3.00 0.00 0.00 0.00 1.00 .....................................................................TATTGCACATTCxCCAGCCTGA.......................... 21 2 1.50 1.00 0.00 0.50 0.00 0.00 ................................CGGACGGTATCTGCGTCAATA................................................................ 21 1 3.00 1.00 1.00 1.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGC.............................. 18 1 3.00 2.00 0.00 1.00 0.00 0.00 .....................................................................TATTGCACATTCTCCAGCCTGA.......................... 22 2 1.50 1.50 0.00 0.00 0.00 0.00 .....................................................................TATTGTACATTCACCGGCCTGA.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCCCCGGCCTG........................... 21 2 1.50 1.50 0.00 0.00 0.00 0.00 .....................................................................TATTGCCCATTCACCGGCCTGA.......................... 22 1 3.00 2.00 0.00 0.00 0.00 1.00 .....................................................................TATTACACATTCACCGGCCTGA.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGAG......................... 23 1 3.00 2.00 0.00 0.00 0.00 1.00 .....................................................................TATTGCACATTCATCGGCCTGA.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGAACATTCACCGGCCTGT.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGACCTG........................... 21 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TCTTGCACATTCACCGGCCTGA.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTGACT........................ 24 1 3.00 0.00 0.00 1.00 0.00 2.00 .....................................................................TATTGCACATTCACCGGAC............................. 19 1 3.00 0.00 0.00 0.00 0.00 3.00 .....................................................................TATTGCCCATTCACCGGCCTGC.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCTCATTCACCGGCCTGA.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCATCGGCCTGT.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................AATTGCACATTCACCGGCCTGA.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00 .....................................................................TATTGCACATTCACCGGCCTCA.......................... 22 1 3.00 3.00 0.00 0.00 0.00 0.00

droEre2 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_4845:10616532-10616644 -	79.99	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG TTGAAACCCCTAAC-CCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACTTACATCAAAAAG Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..................................................................TATTGCACATTCACCGGCCTGA.......................... 22 2 459.50 429.50 0.50 0.00 29.50 ..................................................................TATTGCACATTCACCAGCCTGA.......................... 22 4 31.75 7.00 0.50 0.00 24.25 ..................................................................TATTGCACATTCACCGGCCTG........................... 21 2 52.00 36.00 0.00 0.00 16.00 ..................................................................TATTGCACATTCACCGGCCTGAA......................... 23 2 20.00 17.00 0.00 0.00 3.00 ..................................................................TATTGCACATTCACCGGCCTTA.......................... 22 2 14.00 14.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGT.......................... 22 2 8.00 1.50 1.00 0.00 5.50 ..................................................................TATTGCACATTCACCAGCCTG........................... 21 4 3.75 0.00 1.00 0.00 2.75 ..................................................................TATTGCACATTCACCTGCCTGA.......................... 22 4 3.25 3.00 0.00 0.00 0.25 ..................................................................TATTGCACATTCCCCCGCCTGA.......................... 22 4 3.25 3.25 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGAT......................... 23 2 6.00 1.50 0.00 0.00 4.50 ..................................................................TATTGCACATTCACCCGCCTGA.......................... 22 4 2.50 2.50 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGAAA........................ 24 2 4.00 4.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCT............................ 20 2 4.00 1.00 0.00 0.00 3.00 ..................................................................TATTGCACATTCACCGGCCTGC.......................... 22 2 3.50 3.50 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGAAT........................ 24 2 3.00 1.50 0.00 0.00 1.50 ..................................................................TATTACACATTCACCGGCCTGA.......................... 22 2 3.00 2.50 0.00 0.00 0.50 ..................................................................TATTTCACATTCACCGGCCTGA.......................... 22 2 3.00 3.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGTCCTGA.......................... 22 2 3.00 3.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCAGCCTGT.......................... 22 4 1.25 0.00 0.00 0.00 1.25 ..................................................................TATTGCACATTCACCAGCCTGAA......................... 23 4 1.25 0.00 0.25 0.00 1.00 ..................................................................TATTGCACATTCACCGGCCTCA.......................... 22 2 2.50 2.50 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGCCCTGA.......................... 22 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTGCACCTTCACCGGCCTGA.......................... 22 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGCCCTTA.......................... 22 1 4.00 4.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCTCCAGCCTGA.......................... 22 4 1.00 0.75 0.00 0.00 0.25 .............................CGGACGGTATCTGCGTCAATATT.............................................................. 23 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGG.......................... 22 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGTT......................... 23 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACATTCACCTGCCTTA.......................... 22 2 1.50 1.50 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGAAAA....................... 25 4 0.75 0.50 0.00 0.00 0.25 ..................................................................TATTCCACATTCACCGGCCTGA.......................... 22 2 1.50 1.50 0.00 0.00 0.00 ..................................................................TATTTCACATTCACCTGCCTGA.......................... 22 2 1.50 1.50 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCCGCCTG........................... 21 4 0.75 0.50 0.00 0.00 0.25 ..................................................................TATTGCACATTCACCGGCCCGA.......................... 22 2 1.50 1.00 0.00 0.00 0.50 ..................................................................TATTGCACATTCACCATCCTGA.......................... 22 4 0.75 0.25 0.00 0.00 0.50
2	scaffold_4845:10617997-10618104 -	71.05	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG GTTGAAACCCCTACCCCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCTTGTTAGAATATATTGCACATTCACCAGCCTGAAAATATCAAGGACTTACATC------ Size Hit Count Total Norm V040 Embryo V060 Head V047 Embryo V108 Head ..................................................................TATTGCACATTCCCCAGCCTGA.......................... 22 3 487.67 397.33 10.33 0.00 80.00 ..................................................................TATTGCACATTCACCGGCCTGA.......................... 22 2 459.50 429.50 0.50 0.00 29.50 ..................................................................TATTGCACATTCCCCAGCCTG........................... 21 3 61.33 35.67 2.33 0.00 23.33 ..................................................................TATTGCACATTCACCAGCCTGA.......................... 22 4 31.75 7.00 0.50 0.00 24.25 ..................................................................TATTGCACATTCCCCAGCCT............................ 20 3 35.00 3.33 1.67 0.00 30.00 ..................................................................TATTGCACATTCACCGGCCTG........................... 21 2 52.00 36.00 0.00 0.00 16.00 ..................................................................TATTGCACATTCCCCAGCCTGAA......................... 23 3 31.00 25.33 0.00 0.00 5.67 ..................................................................TATTGCACATTCCCCAGCCTGT.......................... 22 3 17.00 2.67 2.67 0.00 11.67 ..................................................................TATTGCACATTCACCGGCCTGAA......................... 23 2 20.00 17.00 0.00 0.00 3.00 ..................................................................TATTGCACATTCCCCAGCCTGAAA........................ 24 3 10.67 9.67 0.00 0.00 1.00 ..................................................................TATTGCACATTCACCGGCCTTA.......................... 22 2 14.00 14.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGAT......................... 23 3 6.67 3.00 0.33 0.00 3.33 ..................................................................TATTGCACATTCCCCAGCCTTA.......................... 22 3 6.67 6.00 0.00 0.00 0.67 ..................................................................TATTGCACATTCACCGGCCTGT.......................... 22 2 8.00 1.50 1.00 0.00 5.50 ..................................................................TATTGCACATTCACCAGCCTG........................... 21 4 3.75 0.00 1.00 0.00 2.75 ..................................................................TATTGCACATTCCCCAGCCTGC.......................... 22 3 4.33 4.00 0.33 0.00 0.00 ..................................................................TATTGCACATTCCCCCGCCTGA.......................... 22 4 3.25 3.25 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCTGCCTGA.......................... 22 4 3.25 3.00 0.00 0.00 0.25 ..................................................................TATTGCACATTCCCCAGCCTCA.......................... 22 3 4.33 4.00 0.00 0.00 0.33 ..................................................................TATTGCACATTCACCGGCCTGAT......................... 23 2 6.00 1.50 0.00 0.00 4.50 ..................................................................TATTGCACATTCCCCACCCTGA.......................... 22 3 4.00 4.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGC.............................. 18 3 3.67 0.00 0.00 0.00 3.67 ..................................................................TATTTCACATTCCCCAGCCTGA.......................... 22 3 3.67 3.00 0.00 0.00 0.67 ..................................................................TATTGCACATTCACCCGCCTGA.......................... 22 4 2.50 2.50 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGG.......................... 22 3 3.33 3.00 0.00 0.00 0.33 ..................................................................TATTGCACATTCCCCATCCTGA.......................... 22 3 3.00 2.33 0.00 0.00 0.67 ..................................................................TATTGCACATTCACCGGCCT............................ 20 2 4.00 1.00 0.00 0.00 3.00 ..................................................................TATTGCACATTCACCGGCCTGAAA........................ 24 2 4.00 4.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGGCCTGC.......................... 22 2 3.50 3.50 0.00 0.00 0.00 ..................................................................TATTGCACCTTCCCCAGCCTGA.......................... 22 3 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTACACATTCACCGGCCTGA.......................... 22 2 3.00 2.50 0.00 0.00 0.50 ..................................................................TATTGCACATTCACCGGCCTGAAT........................ 24 2 3.00 1.50 0.00 0.00 1.50 ..................................................................TATTGCACATTCCCAAGCCTGA.......................... 22 3 2.00 0.33 0.00 0.00 1.67 ..................................................................TATTGCACATTCACCGTCCTGA.......................... 22 2 3.00 3.00 0.00 0.00 0.00 ..................................................................TATTTCACATTCACCGGCCTGA.......................... 22 2 3.00 3.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCAGCCTGAA......................... 23 4 1.25 0.00 0.25 0.00 1.00 ..................................................................TATTGCACATTCACCGGCCTCA.......................... 22 2 2.50 2.50 0.00 0.00 0.00 ..................................................................TATCGCACATTCCCCAGCCTGA.......................... 22 3 1.67 1.67 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCAGCCTGT.......................... 22 4 1.25 0.00 0.00 0.00 1.25 ..................................................................TATTCCACATTCCCCAGCCTGA.......................... 22 3 1.67 1.33 0.00 0.00 0.33 ..................................................................TATTGCACATTCACCGGCCTGG.......................... 22 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTAA.......................... 22 3 1.33 1.33 0.00 0.00 0.00 ..................................................................TATTGCACATTCACCGCCCTGA.......................... 22 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGCA......................... 23 3 1.33 1.00 0.00 0.00 0.33 ..................................................................TATTGCACCTTCACCGGCCTGA.......................... 22 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCTCCAGCCTGA.......................... 22 4 1.00 0.75 0.00 0.00 0.25 ..................................................................TATTGCACATTCCCCAGCATGA.......................... 22 3 1.33 0.33 0.33 0.00 0.67 ..................................................................TATTGCACATTCCCCAGACTGA.......................... 22 3 1.33 0.67 0.00 0.00 0.67 .............................CGGACGGTATCTGCGTCAATATT.............................................................. 23 2 2.00 2.00 0.00 0.00 0.00 ..................................................................TAGTGCACATTCCCCAGCCTGA.......................... 22 3 1.33 1.33 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGAC......................... 23 3 1.33 1.33 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGAAT........................ 24 3 1.33 0.67 0.00 0.00 0.67 ..................................................................TATTGCACACTCCCCAGCCTGA.......................... 22 3 1.33 1.00 0.00 0.00 0.33 ..................................................................TATTGCACATTCCCCAGCCTT........................... 21 3 1.00 0.33 0.00 0.00 0.67 ..................................................................TATTGCACATTCCCCAACCTGA.......................... 22 3 1.00 1.00 0.00 0.00 0.00 ..................................................................CATTGCACATTCCCCAGCCTGA.......................... 22 3 1.00 1.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCCACAGCCTGA.......................... 22 3 1.00 0.00 0.00 0.00 1.00 ..................................................................TATTGCACATTCACCATCCTGA.......................... 22 4 0.75 0.25 0.00 0.00 0.50 ..................................................................TATTACACATTCCCCAGCCTGA.......................... 22 3 1.00 0.67 0.33 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGAAAA....................... 25 4 0.75 0.50 0.00 0.00 0.25 ..................................................................TATTGCACATTCACCCGCCTG........................... 21 4 0.75 0.50 0.00 0.00 0.25 ..................................................................TATTGCACATTCACCGGCCCGA.......................... 22 2 1.50 1.00 0.00 0.00 0.50 ..................................................................TATTGCACATTCACCTGCCTTA.......................... 22 2 1.50 1.50 0.00 0.00 0.00 ..................................................................TATGGCACATTCCCCAGCCTGA.......................... 22 3 1.00 1.00 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCCGA.......................... 22 3 1.00 0.67 0.00 0.00 0.33 ..................................................................TATTTCACATTCACCTGCCTGA.......................... 22 2 1.50 1.50 0.00 0.00 0.00 ..................................................................TATTGCACATTCCCCAGCCTGAAC........................ 24 3 1.00 1.00 0.00 0.00 0.00 ..................................................................TATTCCACATTCACCGGCCTGA.......................... 22 2 1.50 1.50 0.00 0.00 0.00 ..................................................................TACTGCACATTCCCCAGCCTGA.......................... 22 3 1.00 0.67 0.00 0.00 0.33 ..................................................................TATTGCACATTCCCCATCCTG........................... 21 3 1.00 0.67 0.00 0.00 0.33

droFic1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000454039:1776033-1776176 -	37.27	TGAAAAATCGAAA------------------------------TTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG CGTAGAACGACGAAAAGAGTGTTTTTTTATTTTTTTTTATTTGTTTCCGGACAGTTGTTTGGACGGAAGATGCGCCAGTATGCGGATTTTTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGCTATTCATCAATTAT Size Hit Count Total Norm

droEug1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000409474:1490230-1490341 +	67.54	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG AACAGAGTTGAAATTCCTAAAT-ATTTTTAGGCCTGTGTCTG-TTCAATATAATTATTTAAAAATATATTGCACACTCACCGGCCTGAAAAGATTAGGGATATTCTTTAAAAAG Size Hit Count Total Norm

droBia1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000302291:2816436-2816549 +	62.52	TGAAAAATCGA-------AATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG GTAAAAATCGGTTTAAATGGTTCCGAGATAGTTTTTCGGACGGTGTTTGTGACAATATTTTAGGTTTA-AAAATATTGCACATTCACCGGCCTCTAAACATCAAGGGCATTCCTC------ Size Hit Count Total Norm

droTak1 - 2 hits found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000415401:99738-99848 -	70.51	TGAAAAATCGA---AATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG A-ATAATTCAAATTAATTCCAAGATAGTTTTTCGGACGGTGTCTGCGTCAATATTTCAGTTTTAAAACATATTGCACATTCACCGGCCTGAAAATATCAAGGGTGTTCCTC------ Size Hit Count Total Norm
2	scf7180000415401:99620-99754 -	43.63	TGAAAAATCGAAATTTCTAGA-------------------------TCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG TATCAAG--GGTGTTCCTCAAAAAGTTCCTGCAAATACACACACACACATTTGCAGGCTGGGTTGTGTGTTAATATATTGATTTTAAGCTATATTGCACACTTCCCGGCCTATAAATGCCAAGTGTTTCGACCAAAA-- Size Hit Count Total Norm

droEle1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000491201:735981-736107 -	55.12	TGAAAAA---------------TCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG CAAAAAAAAAAGAAGGGTTTGATCT-AAGACCTAGATTCTTTTTCGGACGGTATCTGCGACAATATGCGAACTT-TTAACATATTGCACATTTACCGGCCTGAAATTATCATGGATATTCATCAAGATA Size Hit Count Total Norm

droRho1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000780104:82075-82185 -	66.07	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG TTCAAACT---AAGTCCTAGGTTGTTTTTCGGACGGTATTTGTGACAATATGCTTAATTTTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGATATTCTTCGATATT Size Hit Count Total Norm

droKik1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
3	scf7180000302471:941554-941677 -	54.19	TGAAAAATCGAAAT-----------TTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATTAACATCGAAAAG GCTAAAAGTGTAATTTTAGACTATTTTCTGGACCATGATTCGGACGGGATCTGTGTCAATACTTGCTT-TTTATTCGTATTGCACACATACCGGCCTTATAATATTCAGACTGATCAACAGAATT Size Hit Count Total Norm

droAna3 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scaffold_13266:4132915-4133034 +	57.85	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAAT-------TAACATCGAAAAG AGAGAAATATTTGTTGCCAGATTATCTTCAGGACGGTATTTGTGTCAATATGG-ATATTTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGCTCGTCATCTGTGACTAAAAG Size Hit Count Total Norm V105 Male body V106 Head V055 Unknown V039 Embryo ..................................................................TATTGCACTTATACCGGCCTGA................................. 22 1 3148.00 31.00 19.00 29.00 3069.00 ..................................................................TATTGCACTTATACCGGCCTG.................................. 21 1 299.00 8.00 6.00 5.00 280.00 ..................................................................TATTGCACTTATACCGGCCTGAA................................ 23 1 235.00 0.00 2.00 1.00 232.00 ..................................................................TATTGCACTTATACCGGCCTTA................................. 22 1 158.00 0.00 0.00 1.00 157.00 .............................AGGACGGTATTTGTGTCAATATG..................................................................... 23 1 91.00 31.00 6.00 2.00 52.00 ..................................................................TATTGCACTTATACCGGCCTGAAA............................... 24 1 87.00 0.00 0.00 0.00 87.00 ..................................................................TATTGCACTTATACCTGCCTGA................................. 22 1 66.00 2.00 0.00 0.00 64.00 ..................................................................TATTGCACTTATACCGTCCTGA................................. 22 1 60.00 0.00 1.00 2.00 57.00 ..................................................................TATTGCACTTATACCGGCCTGC................................. 22 1 39.00 0.00 0.00 0.00 39.00 ..................................................................TATTGCACTTATACCGGCCT................................... 20 1 38.00 0.00 1.00 0.00 37.00 ..................................................................TATTGCACTTATACCGGCCTGT................................. 22 1 34.00 2.00 0.00 2.00 30.00 ..................................................................TATTGCACTTATACCCGCCTGA................................. 22 1 29.00 0.00 0.00 1.00 28.00 ..................................................................TATTGCACTTATACCTGCCTTA................................. 22 1 18.00 0.00 0.00 0.00 18.00 ..................................................................TATTGCACTTATACCAGCCTGA................................. 22 1 16.00 1.00 0.00 0.00 15.00 ..................................................................TATTGCACTTATACCGCCCTGA................................. 22 1 16.00 0.00 0.00 0.00 16.00 .............................AGGACGGTATTTGTGTCAATAT...................................................................... 22 1 15.00 3.00 0.00 0.00 12.00 ..................................................................TATTGCACTTATACCGGCCTCA................................. 22 1 14.00 0.00 0.00 0.00 14.00 ..................................................................TATTGCACTTATACCGGCCTGAAAA.............................. 25 1 14.00 0.00 0.00 1.00 13.00 ..................................................................TATTGCACTTATACCGGCCTGAT................................ 23 1 13.00 5.00 1.00 0.00 7.00 ..................................................................TATTGCACTTATACCGGCCTTAA................................ 23 1 12.00 0.00 0.00 0.00 12.00 ..................................................................TATTTCACTTATACCGGCCTGA................................. 22 1 12.00 0.00 0.00 0.00 12.00 ..................................................................TATTGCACTTATACCGGCCTGCA................................ 23 1 12.00 0.00 0.00 0.00 12.00 .............................AGGACGGTATTTGTGTCAATATT..................................................................... 23 1 12.00 0.00 0.00 0.00 12.00 ..................................................................TATTGCACTTATACCGGCCTGTA................................ 23 1 11.00 0.00 0.00 0.00 11.00 ..................................................................TATTGCACTTATACCGTCCTTA................................. 22 1 11.00 0.00 0.00 0.00 11.00 ..................................................................TATTGCACTTATACCGGCC.................................... 19 1 9.00 0.00 0.00 0.00 9.00 ..................................................................TATTGCACTTATACCCGCCTCA................................. 22 1 9.00 0.00 0.00 0.00 9.00 ..................................................................TATTGCACTTATACCGGCCCGA................................. 22 1 9.00 0.00 0.00 0.00 9.00 .............................AGGACGGTATTTGTGTCAATA....................................................................... 21 1 8.00 1.00 2.00 0.00 5.00 ..................................................................TATTGCACTTATACCGACCTGA................................. 22 1 8.00 0.00 0.00 0.00 8.00 ..................................................................TATTGCGCTTATACCGGCCTGA................................. 22 1 8.00 0.00 0.00 0.00 8.00 ..................................................................TATTCCACTTATACCGGCCTGA................................. 22 1 7.00 0.00 0.00 0.00 7.00 ..................................................................TATTGCACTTATACCGGC..................................... 18 1 7.00 1.00 0.00 2.00 4.00 ..................................................................TATGGCACTTATACCGGCCTGA................................. 22 1 7.00 0.00 1.00 0.00 6.00 ..................................................................TATTGCACTTATACCCGCCTTA................................. 22 1 7.00 0.00 0.00 0.00 7.00 ..................................................................TATTGCACTTATACCGGCCTGG................................. 22 1 7.00 0.00 0.00 0.00 7.00 ..................................................................TATTGCACTTATACCGTCCTG.................................. 21 1 7.00 0.00 0.00 0.00 7.00 ..................................................................CATTGCACTTATACCGGCCTGA................................. 22 1 6.00 0.00 0.00 0.00 6.00 ..................................................................TATTGCACTTATACCTTCCTGA................................. 22 1 6.00 0.00 0.00 0.00 6.00 ..................................................................TATTGCACTTATACCGGCCA................................... 20 1 6.00 0.00 0.00 0.00 6.00 ..................................................................TATTGCACTTATACCGGTCTGA................................. 22 1 6.00 0.00 0.00 1.00 5.00 ..................................................................TATTGCACTTATATCGGCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TAGTGCACTTATACCGGCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ...................................................................ATTGCACTTATACCGGCCTGA................................. 21 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATACCCGCCTG.................................. 21 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATAACGGCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 .............................AGGACGGTATTTGTGTCAATATA..................................................................... 23 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TACTGCACTTATACCGGCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATACCATCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTCTACCGGCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATCGCACTTATACCGGCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATACCGGCCTGAG................................ 23 1 5.00 1.00 1.00 0.00 3.00 ..................................................................TATTGCACTTATACCTGCCTCA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................GATTGCACTTATACCGGCCTGA................................. 22 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATACCGGCCTGAAC............................... 24 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATACCGTCCTGAA................................ 23 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATACCTGCCTG.................................. 21 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTATACCGGCCTT.................................. 21 1 5.00 0.00 0.00 0.00 5.00 ..................................................................TATTGCACTTACACCGGCCTGA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTGTACTTATACCGGCCTGA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTGCACTTATACCGGCCCTA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTGCACTTATACCGGCCCG.................................. 21 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTGCACTTATACCGGACTGA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTGCCCTTATACCGGCCTGA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTGCACTTATACCGGCCTAA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTGCACCTATACCGGCCTGA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTACACTTATACCGGCCTGA................................. 22 1 4.00 0.00 0.00 0.00 4.00 ..................................................................TATTACACTTATACCGTCCTGA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCGTCCTGT................................. 22 1 3.00 1.00 0.00 0.00 2.00 ..................................................................TATTGCACTTATACCGCCCTCA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCGGCCTGACA............................... 24 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCTGCCTGAA................................ 23 1 3.00 0.00 0.00 0.00 3.00 .........TTTGTTGCCAGATTATCTTC............................................................................................ 20 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTAGACCGGCCTGA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTTCACTTATACCTGCCTGA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACTGGCCTGA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCGGCATGA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCGGCCTGATA............................... 24 1 3.00 0.00 0.00 2.00 1.00 ..................................................................TATTGCACTTATATCGGCCTTA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCAATTATACCGGCCTGA................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTCCACTTATACCGGCCTG.................................. 21 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCGGCCTGAAG............................... 24 1 3.00 0.00 1.00 0.00 2.00 ..................................................................TATTGCACTTATACCGGCCTTT................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCGTCCTT.................................. 21 1 3.00 0.00 0.00 0.00 3.00 .................................................................CTATTGCACTTATACCGGCCTGA................................. 23 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATTGCACTTATACCGTCCTGC................................. 22 1 3.00 0.00 0.00 0.00 3.00 ..................................................................TATAGCACTTATACCGGCCTGA................................. 22 1 3.00 0.00 0.00 1.00 2.00 ..................................................................TATTGCACTTATACCCGCCTGAA................................ 23 1 3.00 0.00 0.00 0.00 3.00 ..................................................................AATTGCACTTATACCGGCCTGA................................. 22 1 3.00 0.00 0.00 0.00 3.00

droBip1 - 1 hit found

Lastz ID	Coordinate	Normalized Identity %	Sequence	RNAfold	UNAfold
1	scf7180000396427:2575634-2575744 +	63.77	TGAAAAATCGAAATTTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAAT-TAACATCGAAAAG TGAAATAT--TTGTGGCCAGATACCCTTTAGGTCGGTATTTGTGACAATATGATAT--TTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCATTCGTCATCTGTGAG Size Hit Count Total Norm

dp4 - 2 hits found