dme-mir-311- 12- and 20-way alignments

dme-mir-311	chr2R:16471382-16471465 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 16471393-16471414
   star strand at position 16471429-16471451
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:16471367-16471480 -	TGAAA----------------AA--------TCGAAATT-TCTAGATCATTTTTCGGACGGTATAT-GGGTTAATATTT--C------------ATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATT---AACAT----------------------------------------------CGAAAAG
droSim1	chr2R:15132667-15132782 -	TGAAA----------------AA--------TCGAAATT-TCTAGATCATTTTTCGGACGGTATAT-GAGTCAATATTTTTT------------TTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATT---AGCAT----------------------------------------------CGAAAAA
droSec1	super_1:14025591-14025695 -	GAA---------------------------------ATT-TCTAGATAATTTTTCGGACGGTATAT-GAGTCAATGTTT--T------------CTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATT---AGCAT----------------------------------------------CGAAAAA
droYak2	chr2R:12724807-12724918 +	TTTAA----------------AAATA-----TCTCACTT-TCTAGATAGTTTTGCGGACGGTATCT-GCGTCAATATTT--C------------CTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACT---TGCAT----------------------------------------------CG-----
droEre2	scaffold_4845:10616537-10616644 -	TTGAAACC-----------------------CCTA-A-C-CCTAGATAGTTTTTCGGACGGTATCT-GCGTCAATATTT--C------------CTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACT---TACAT----------------------------------------------CA-----
droAna3	scaffold_13266:4132899-4133028 +	CAGCGATCGCTATCTGAGAGAAA--------TATTTGTT-GCCAGATTATCTTCAGGACGGTATTT-GTGTCAATATGG--AT-------------ATTTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGCT--CGTCAT----------------------------------------------CTGTGAC
dp4	chr3:8679877-8679982 +	CATCG----------------AGCTG-----CTTTGATT-TGTAGG-----------CCGTGGTTC-TTGCAAATACGG--AT---------------TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAACGCCGGCAA----------------------------------------------CAGCAAA
droPer1	Unknown	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180700:3453290-3453392 +	TAATT----------------TA----------TAGGCT-TCGGG------------------GTT-GTTGCAAAATGG--TTTATT-----CTAATAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAAC--TTTT---G-----------AACAT---CCC----------------------------GGGTGGG
droVir3	scaffold_12875:13668855-13669008 -	AAGCT----------------GGAAAAACTAGTGCGTCC-GCATGACCATTTTAAGGACGGTATTT-GTGACAATATGT--GC-AGTTAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTGCTCTCTTCGATATATGGAACATTAAAAC----------------------------AATTTGG
droMoj3	scaffold_6496:9090405-9090568 -	AAACG----------------AAAAATG---TCAA-ATTTTCAGCTGCGTTTGCAGGACGGTATTT-GTGACAATATGA--ATTATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATTT-----------AAATGATTTGTGTATTTAAAATAAATTTTCACCA-----
droGri2	scaffold_15245:17564372-17564470 +	TTAAT----------------AAAAGTG----TTAAATT-TGCAGT------------TCGTGTTTAG------TGTTTTTT------------CCCGCTTAAGCATCTTGCAATTTATATGGCTTGCAGTTATCTGCATTA---ACCAT----------------------------------------------TT----T

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:16471367-16471480 -	NA	TGAAAAATC-G--AAA----------------------------------------T--TTCTAGATCATTTTTCGGACGGTATATGGGTTAATATTTCAT---TTG------------TCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAA------TTAACATCGA------AAAG
droSim1	chr2R:15132667-15132782 -	1	TGAAAAATC-G--AAA----------------------------------------T--TTCTAGATCATTTTTCGGACGGTATATGAGTCAATATTTTTTTT-TTT------------TCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAA------TTAGCATCGA------AAAA
droSec1	super_1:14025591-14025696 -	1	GAA------------A----------------------------------------T--TTCTAGATAATTTTTCGGACGGTATATGAGTCAATGTTTTCT---TTT------------TCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAA------TTAGCATCGA------AAAA
droYak2	chr2R:12724807-12724923 +	1	TTTAAAAATATCTCAC----------------------------------------T--TTCTAGATAGTTTTGCGGACGGTATCTGCGTCAATATTTCCT---TGT------------TAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGA------CTTGCATCGA------AAAG
droEre2	scaffold_4845:10616532-10616644 -	1	TTGAAACCC-C--TAA-------------------------------------------CCCTAGATAGTTTTTCGGACGGTATCTGCGTCAATATTTCCT---TGT------------TAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGA------CTTACATCAA------AAAG
droEug1	scf7180000409474:1490230-1490341 +	1	AACAGAGTT-G--AAA----------------------------------------T--TCCTAAAT-ATTTTTAGGCCTGTGTCTGT-TCAATATAATTA---TTT------------AAAAATATATTGCACACTCACCGGCCTGAAAAGATTAGGGA------TATTCTTTAA------AAAG
droBia1	scf7180000302291:2816436-2816549 +	1	GTAAAAATC-G--G-------TTTA----------------AATGG----------T--TCCGAGATAGTTTTTCGGACGGTGTTTGTGACAATATTTTAG---G-T------------TTAAAAATATTGCACATTCACCGGCCTCTAAACATCAAGGG------CATTCCTC------------
droTak1	scf7180000415401:99738-99848 -	1	AATAATTCA---------------A---------------------ATTAATTCCA-------AGATAGTTTTTCGGACGGTGTCTGCGTCAATATTTCAG---TTT------------TAAAACATATTGCACATTCACCGGCCTGAAAATATCAAGGG------TGTTCCTC------------
droEle1	scf7180000491201:735981-736107 -	1	CAAAAAAAAAAG---AAGGGTTTGA---------------------TCTAAGACCT-------AGATTCTTTTTCGGACGGTATCTGCGACAATATGCGAA---C-T------------TTTAACATATTGCACATTTACCGGCCTGAAATTATCATGGA------TATTCATCAA------GATA
droRho1	scf7180000780104:82075-82185 -	1	TTCAAACTA------A----------------------------------------G--TCCTAGGTTGTTTTTCGGACGGTATTTGTGACAATATGCTTA---ATT------------TTAGACATATTGCACATTTACCGGCCTGAAATTAACATGGA------TATTCTTCGA------TATT
droFic1	scf7180000454039:1776033-1776176 -	1	CGTAGAACGACG---AAAAGAGTGTTTTTTTATTTTTTTTTATTTG----------T--TTCCGGACAGTTGTTTGGACGGAAGATGCGCCAGTATGCGGA---TTT------------TTAAGCATATTGCACATTTACCGGCCTAGTAATGCACTGGC------TATTCATCAA------TTAT
droKik1	scf7180000302471:941554-941677 -	3	GCTAAAAGT-G--TAA---TTTTAG---------------------ACTATTTTCT-------GGACCATGATTCGGACGGGATCTGTGTCAATACTTGCT---T-T------------TTATTCGTATTGCACACATACCGGCCTTATAATATTCAGAC------TGATCAACAG------AATT
droAna3	scaffold_13266:4132915-4133034 +	1	AGAGAAATA-T--TTG----------------------------------------T--TGCCAGATTATCTTCAGGACGGTATTTGTGTCAATATGGATA---T-T------------TCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGC-----TCGTCATCTGTGACTAAAAG
droBip1	scf7180000396427:2575634-2575744 +	1	TGAAATATT-----TG----------------------------------------T--GGCCAGATACCCTTTAGGTCGGTATTTGTGACAATATGATA-----TT------------TCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCAT-----TCGTCATCTG------TGAG
dp4	chr3:8679876-8679985 +	2	CATCGAGCTGCTTTG-----------------------------------------------------ATTTGTAGGCCGTGGTTCTTGCAAATACG--GA---T-T------------CATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAACGCCGGCAACAGCAA------AGTA
droPer1	super_4:2566469-2566567 +	2	ACC--------------------------------------------------------------------TTCAAGCTGGGGGATGG-GCAATACTGTGTTGTATT------------TGAACAGTATTGCACACCCACTGGCCTGAAAGTGCCTACTG------CTGGGTTCAACAACTTAATC
droWil1	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12875:13668876-13669002 -	4	GAAAAACTA-G--TGC----------------------------------------GTCCGCATGACCATTTTAAGGACGGTATTTGTGACAATATGTGCA---G-TTAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTG------CTCTCTTCGA------TATA
droMoj3	Unknown	NA	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15245:17564385-17564474 +	1	AAATTTGCA-------------------------------------------------------GTTCGTGTTTA-----------------GTGTTTTTTCC-CGC------------TTAAGCATCTTGCAATTTATATGGCTTGCAGTTATCTGCAT------TAACCATTTT------CAGG

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TGAAA----------------AA--------TCGAAATT-TCTAGATCATTTTTCGGACGGTATAT-GGGTTAATATTT--C------------ATTTGTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATT---AACAT----------------------------------------------CGAAAAG

Size

Hit Count

Total Norm

droSim1

TGAAA----------------AA--------TCGAAATT-TCTAGATCATTTTTCGGACGGTATAT-GAGTCAATATTTTTT------------TTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATT---AGCAT----------------------------------------------CGAAAAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................................................................................................TATTGCACATTCACCGGCCTGA...........................................................................	22	1	35021.00	5438.00	118.00	1798.00	27667.00
..........................................................................................................TATTGCACATTCACCGGCCTGG...........................................................................	22	1	7314.00	19.00	25.00	451.00	6819.00
..........................................................................................................TATTGCACATTCACCGGCCTG............................................................................	21	1	4493.00	644.00	17.00	764.00	3068.00
..........................................................................................................TATTGCACATTCACCGGCCTGAA..........................................................................	23	1	2828.00	321.00	4.00	231.00	2272.00
..........................................................................................................TATTGCACATTCACCGGCC..............................................................................	19	1	1860.00	0.00	7.00	151.00	1702.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAA.........................................................................	24	1	1662.00	69.00	1.00	64.00	1528.00
......................................................CGGACGGTATAT-GAGTCAATATT.............................................................................................................................	23	1	446.00	81.00	0.00	47.00	318.00
..........................................................................................................TATTGCACATTCACCGGCCTGAT..........................................................................	23	1	391.00	15.00	4.00	87.00	285.00
..........................................................................................................TATTGCACATTCACCGGCCTGT...........................................................................	22	1	259.00	42.00	1.00	141.00	75.00
...........................................................................................................ATTGCACATTCACCGGCCTGA...........................................................................	21	1	234.00	73.00	1.00	12.00	148.00
..........................................................................................................TATTGCACATTCACCGGCCTGAC..........................................................................	23	1	166.00	4.00	0.00	31.00	131.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAC.........................................................................	24	1	147.00	1.00	0.00	4.00	142.00
......................................................CGGACGGTATAT-GAGTCAATAT..............................................................................................................................	22	1	132.00	23.00	0.00	14.00	95.00
..........................................................................................................TATTGCACATTCACCGGCCGG............................................................................	21	1	114.00	1.00	0.00	27.00	86.00
..........................................................................................................TATTGCACATTCACCGGC...............................................................................	18	1	104.00	1.00	1.00	6.00	96.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAAA........................................................................	25	1	87.00	7.00	0.00	3.00	77.00
..........................................................................................................TATTTCACATTCACCGGCCTGA...........................................................................	22	1	86.00	0.00	0.00	2.00	84.00
...........................................................................................................ATTGCACATTCACCGGCCTGAA..........................................................................	22	1	83.00	6.00	0.00	7.00	70.00
..........................................................................................................TATTGCACATTCACCGGCCTGC...........................................................................	22	1	69.00	27.00	1.00	15.00	26.00
..........................................................................................................TATTGCACATTCACCGGCCT.............................................................................	20	1	58.00	18.00	0.00	16.00	24.00
...........................................................................................................ATTGCACATTCACCGGCCTG............................................................................	20	1	53.00	11.00	1.00	11.00	30.00
..........................................................................................................TATTGCACATTCACCGGCCTT............................................................................	21	1	48.00	1.00	0.00	3.00	44.00
..........................................................................................................TATTGCACATTCACCGGAC..............................................................................	19	1	47.00	0.00	0.00	6.00	41.00
..........................................................................................................TATTCCACATTCACCGGCCTGA...........................................................................	22	1	47.00	3.00	0.00	0.00	44.00
..........................................................................................................TATTGCACATTCACCGGCCTGTA..........................................................................	23	1	45.00	8.00	0.00	32.00	5.00
..........................................................................................................TATTGCACATTCACCGGCCTGAG..........................................................................	23	1	43.00	5.00	0.00	4.00	34.00
...........................................................................................................ATTGCACATTCACCGGCCTGAAA.........................................................................	23	1	42.00	0.00	0.00	2.00	40.00
..........................................................................................................TATTGCGCATTCACCGGCCTGA...........................................................................	22	1	41.00	14.00	0.00	1.00	26.00
...........................................................................................................ATTGCACATTCACCGGCCTGG...........................................................................	21	1	38.00	2.00	0.00	3.00	33.00
..............................................................................................................GCACATTCACCGGCCTGA...........................................................................	18	1	38.00	3.00	0.00	1.00	34.00
..........................................................................................................TATTGCACATTCACCGGCCCGA...........................................................................	22	1	38.00	6.00	0.00	1.00	31.00
..........................................................................................................TATTxCACATTCACCGGCCTGA...........................................................................	21	1	32.00	0.00	0.00	0.00	32.00
..........................................................................................................TATTGCACATTCACCGGCCTGTT..........................................................................	23	1	31.00	0.00	0.00	31.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTTA...........................................................................	22	1	30.00	13.00	0.00	0.00	17.00
......................................................CGGACGGTATAT-GATTCAATATT.............................................................................................................................	23	1	29.00	0.00	0.00	0.00	29.00
..........................................................................................................TATTGCACATTCACCGGACTGA...........................................................................	22	1	28.00	23.00	0.00	2.00	3.00
..........................................................................................................TATTGCACATTCGCCGGCCTGA...........................................................................	22	1	27.00	8.00	0.00	1.00	18.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAG.........................................................................	24	1	27.00	3.00	0.00	1.00	23.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAT.........................................................................	24	1	26.00	10.00	0.00	3.00	13.00
..........................................................................................................TATTGCACATTCACCGGCCTGATA.........................................................................	24	1	25.00	3.00	0.00	3.00	19.00
..........................................................................................................TATTGCACATTCAACGGCCTGA...........................................................................	22	1	24.00	19.00	0.00	2.00	3.00
..........................................................................................................TATTGCACATTCACCGACCTGA...........................................................................	22	1	23.00	9.00	0.00	0.00	14.00
..........................................................................................................TATTGCACACTCACCGGCCTGA...........................................................................	22	1	22.00	11.00	0.00	1.00	10.00
......................................................CGGACGGTATAT-GAGTCAATATTA............................................................................................................................	24	1	21.00	11.00	0.00	0.00	10.00
..........................................................................................................TATTTCACATTCACCGGCCTGG...........................................................................	22	1	21.00	0.00	0.00	1.00	20.00
..........................................................................................................TATTGCACATTCACTGGCCTGA...........................................................................	22	1	21.00	9.00	0.00	2.00	10.00
..........................................................................................................TATTGCACATTCACAGGCCTGA...........................................................................	22	1	20.00	7.00	0.00	2.00	11.00
..........................................................................................................TATTGCACATTCACCGGTCTGA...........................................................................	22	1	20.00	8.00	1.00	0.00	11.00
..........................................................................................................TATTGCACGTTCACCGGCCTGA...........................................................................	22	1	19.00	7.00	0.00	1.00	11.00
..........................................................................................................TATTGCACATTCACCAGCCTGA...........................................................................	22	1	19.00	9.00	0.00	0.00	10.00
..........................................................................................................TATTGCACATTCACCGGCCCG............................................................................	21	1	18.00	2.00	0.00	0.00	16.00
..........................................................................................................TATTGCACATTCACCTGCCTGA...........................................................................	22	1	18.00	11.00	0.00	1.00	6.00
..........................................................................................................TATTGCATATTCACCGGCCTGA...........................................................................	22	1	18.00	6.00	0.00	0.00	12.00
..........................................................................................................TATTTCACATTCACCGGCCTGAA..........................................................................	23	1	17.00	0.00	0.00	0.00	17.00
...........................................................................................................ATTGCACATTCACCGGCCTGAT..........................................................................	22	1	17.00	1.00	0.00	3.00	13.00
..........................................................................................................TATTGCACCTTCACCGGCCTGA...........................................................................	22	1	17.00	6.00	0.00	1.00	10.00
..........................................................................................................TATTCCACATTCACCGGCCTGG...........................................................................	22	1	17.00	0.00	0.00	0.00	17.00
......................................................CGGACGGTATAT-GACTCAATATT.............................................................................................................................	23	1	17.00	0.00	0.00	1.00	16.00
..........................................................................................................TATTGCACATTCACCGGCCTTG...........................................................................	22	1	16.00	1.00	0.00	0.00	15.00
..........................................................................................................TATTGCACATTCACCGGCCTCA...........................................................................	22	1	15.00	8.00	0.00	1.00	6.00
..........................................................................................................TATTGCACATTCACCGGCCTGTAA.........................................................................	24	1	15.00	0.00	0.00	10.00	5.00
..........................................................................................................TATTACACATTCACCGGCCTGA...........................................................................	22	1	15.00	2.00	0.00	1.00	12.00
..........................................................................................................TATTGCAAATTCACCGGCCTGA...........................................................................	22	1	15.00	12.00	0.00	1.00	2.00
..........................................................................................................TATTGCACATTCACCGGCCTGACA.........................................................................	24	1	15.00	1.00	0.00	2.00	12.00
.........................................................................................................CTATTGCACATTCACCGGCCTGA...........................................................................	23	1	14.00	11.00	0.00	0.00	3.00
..........................................................................................................TACTGCACATTCACCGGCCTGA...........................................................................	22	1	14.00	5.00	0.00	0.00	9.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAAC........................................................................	25	1	14.00	0.00	0.00	0.00	14.00
..........................................................................................................TATTGCACATTCACCGTCCTG............................................................................	21	1	13.00	3.00	0.00	1.00	9.00
...........................................................................................................ATTGCACATTCACCGGCC..............................................................................	18	1	13.00	0.00	0.00	2.00	11.00
..........................................................................................................CATTGCACATTCACCGGCCTGA...........................................................................	22	1	13.00	6.00	1.00	0.00	6.00
..........................................................................................................TATTGCACATCCACCGGCCTGA...........................................................................	22	1	13.00	6.00	0.00	0.00	7.00
..........................................................................................................TATTGCACATTCACCGGCCTGATT.........................................................................	24	1	13.00	1.00	0.00	5.00	7.00
..........................................................................................................TATTGCACATTCATCGGCCTGA...........................................................................	22	1	12.00	3.00	0.00	1.00	8.00
......................................................CGGACGGTATAT-GAGTCAAT................................................................................................................................	20	1	12.00	0.00	0.00	2.00	10.00
..........................................................................................................TGTTGCACATTCACCGGCCTGA...........................................................................	22	1	12.00	5.00	0.00	0.00	7.00
..........................................................................................................TATTxCACATTCACCGGCCTGAA..........................................................................	22	1	12.00	0.00	0.00	2.00	10.00
..........................................................................................................TATTGTACATTCACCGGCCTGA...........................................................................	22	1	12.00	5.00	0.00	0.00	7.00
..........................................................................................................TATTGCACATTCACCGTCCTGA...........................................................................	22	1	12.00	9.00	0.00	0.00	3.00
..........................................................................................................TATCGCACATTCACCGGCCTGA...........................................................................	22	1	12.00	5.00	0.00	1.00	6.00
..........................................................................................................TATTGCACATTTACCGGCCTGA...........................................................................	22	1	11.00	5.00	0.00	1.00	5.00
......................................................CGGACGGTATAT-GAGTCAATATTAA...........................................................................................................................	25	1	11.00	6.00	0.00	0.00	5.00
......................................................CGGACGGTATAT-GATTCAATAT..............................................................................................................................	22	1	11.00	0.00	0.00	1.00	10.00
..........................................................................................................TATTGCACATTCACCCGCCTGA...........................................................................	22	1	11.00	11.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCCCCGGCCTGA...........................................................................	22	1	10.00	10.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTAA...........................................................................	22	1	10.00	4.00	0.00	1.00	5.00
..........................................................................................................TATTGCACATTCACCTGCCTG............................................................................	21	1	10.00	1.00	0.00	3.00	6.00
......................................................CGGACGGTATAT-GAGTCAATA...............................................................................................................................	21	1	10.00	3.00	0.00	1.00	6.00
..........................................................................................................TATTGCCCATTCACCGGCCTGA...........................................................................	22	1	9.00	2.00	0.00	1.00	6.00
..........................................................................................................TATTGGACATTCACCGGCCTGA...........................................................................	22	1	9.00	2.00	1.00	1.00	5.00
..........................................................................................................TATTTCACATTCACCGGCC..............................................................................	19	1	9.00	0.00	0.00	1.00	8.00
..........................................................................................................TATTCCACATTCACCGGCCTGAA..........................................................................	23	1	9.00	0.00	0.00	1.00	8.00
......................................................CGGACGGTATAT-GACTCAATAT..............................................................................................................................	22	1	9.00	0.00	0.00	1.00	8.00
........................................................................................................TATATTGCACATTCACCGGCCTGA...........................................................................	24	1	8.00	2.00	0.00	1.00	5.00
..........................................................................................................TATTGCACATTCACCGGCCTGCA..........................................................................	23	1	8.00	7.00	0.00	1.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCCGG...........................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..........................................................................................................TATTTCACATTCACCGGCCTG............................................................................	21	1	8.00	0.00	0.00	3.00	5.00
..........................................................................................................TATTGCACATTCACCGCCCTGA...........................................................................	22	1	8.00	3.00	0.00	0.00	5.00
..........................................................................................................TCTTGCACATTCACCGGCCTGA...........................................................................	22	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGGCTGA...........................................................................	22	1	8.00	5.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATTCACCCGCCTG............................................................................	21	1	8.00	4.00	0.00	1.00	3.00
..........................................................................................................TATTxCACATTCACCGGCCTGG...........................................................................	21	1	8.00	0.00	0.00	0.00	8.00

droSec1

GAA---------------------------------ATT-TCTAGATAATTTTTCGGACGGTATAT-GAGTCAATGTTT--T------------CTTTTTCGAATATATTGCACATTCACCGGCCTGAAAATATCAAGAATT---AGCAT----------------------------------------------CGAAAAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..........................................................................................................TATTGCACATTCACCGGCCTGA...........................................................................	22	1	3072.00	45.00	2699.00	328.00
..........................................................................................................TATTGCACATTCACCGGCCTG............................................................................	21	1	299.00	6.00	266.00	27.00
..........................................................................................................TATTGCACATTCACCGGCCTGAA..........................................................................	23	1	205.00	2.00	185.00	18.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAA.........................................................................	24	1	130.00	0.00	123.00	7.00
...........................................................................................................ATTGCACATTCACCGGCCTGA...........................................................................	21	1	51.00	0.00	48.00	3.00
..........................................................................................................TATTGCACATTCACCGGCCTGAT..........................................................................	23	1	40.00	1.00	34.00	5.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAT.........................................................................	24	1	36.00	4.00	31.00	1.00
..........................................................................................................TATTGCACATTCACCGGCCT.............................................................................	20	1	28.00	1.00	25.00	2.00
..........................................................................................................TATTGCACATTCACCGGCCTGT...........................................................................	22	1	26.00	7.00	15.00	4.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAAA........................................................................	25	1	21.00	1.00	19.00	1.00
..........................................................................................................TATTGCACATTCACCGGTCTGA...........................................................................	22	1	12.00	0.00	10.00	2.00
..........................................................................................................TATTGCACATTCACCGGC...............................................................................	18	1	11.00	1.00	10.00	0.00
..........................................................................................................TATTGCACATTCACCGGCTTGA...........................................................................	22	1	11.00	1.00	10.00	0.00
..........................................................................................................TATTCCACATTCACCGGCCTGA...........................................................................	22	1	9.00	0.00	9.00	0.00
......................................................CGGACGGTATAT-GAGTCAATGTT.............................................................................................................................	23	1	8.00	1.00	5.00	2.00
..........................................................................................................TATTGCACATTCATCGGCCTGA...........................................................................	22	1	8.00	0.00	8.00	0.00
..........................................................................................................TATTGCATATTCACCGGCCTGA...........................................................................	22	1	8.00	0.00	8.00	0.00
............................................................................................................TTGCACATTCACCGGCCTGA...........................................................................	20	1	7.00	0.00	7.00	0.00
..........................................................................................................TATTGxxCATTCACCGGCCTGA...........................................................................	20	1	7.00	0.00	7.00	0.00
..........................................................................................................TATTGCACATTCACCGACCTGA...........................................................................	22	1	7.00	0.00	7.00	0.00
..........................................................................................................TATTGCGCATTCACCGGCCTGA...........................................................................	22	1	7.00	0.00	7.00	0.00
..........................................................................................................TATTGCACATTCACCGCCCTGA...........................................................................	22	1	6.00	0.00	5.00	1.00
..........................................................................................................TATTGCACATTCACCGGCCTGTAT.........................................................................	24	1	6.00	6.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGACA.........................................................................	24	1	5.00	0.00	5.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAG..........................................................................	23	1	5.00	0.00	5.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAC.........................................................................	24	1	5.00	1.00	4.00	0.00
..........................................................................................................TATTGCACATTCATCGGCCTGAA..........................................................................	23	1	5.00	0.00	5.00	0.00
...........................................................................................................ATTGCACATTCACCGGCCTG............................................................................	20	1	5.00	0.00	5.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAAT........................................................................	25	1	5.00	1.00	4.00	0.00
..........................................................................................................TATTGCACGTTCACCGGCCTGA...........................................................................	22	1	5.00	0.00	4.00	1.00
..........................................................................................................TATTGCACATTCACCGGCCTGG...........................................................................	22	1	5.00	0.00	5.00	0.00
..........................................................................................................TATTGCACATTCACCGTCCTGA...........................................................................	22	1	4.00	0.00	1.00	3.00
..........................................................................................................TATTGCACACTCACCGGCCTGA...........................................................................	22	1	4.00	0.00	4.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAAAA.......................................................................	26	1	4.00	0.00	4.00	0.00
..........................................................................................................TATTGCACATACACCGGCCTGA...........................................................................	22	1	4.00	0.00	4.00	0.00
..........................................................................................................TATTGCCCATTCACCGGCCTGA...........................................................................	22	1	4.00	0.00	4.00	0.00
..........................................................................................................TACTGCACATTCACCGGCCTGA...........................................................................	22	1	4.00	0.00	4.00	0.00
..........................................................................................................TATTGCACATTCACCTGCCTGA...........................................................................	22	1	4.00	0.00	2.00	2.00
..........................................................................................................TATTGCACATTCACCGGCCTGAC..........................................................................	23	1	4.00	0.00	4.00	0.00
..........................................................................................................TATTTCACATTCACCGGCCTGA...........................................................................	22	1	4.00	0.00	3.00	1.00
..........................................................................................................TATTGCACATTCACCGGCCTGATA.........................................................................	24	1	4.00	1.00	2.00	1.00
..........................................................................................................TATTGCACATCCACCGGCCTGA...........................................................................	22	1	3.00	0.00	3.00	0.00
.........................................................................................................CTATTGCACATTCACCGGCCTGA...........................................................................	23	1	3.00	0.00	3.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCCGA...........................................................................	22	1	3.00	0.00	3.00	0.00
..........................................................................................................TATTGCATATTCACCGGCCTG............................................................................	21	1	3.00	0.00	3.00	0.00
...........................................................................................................ATTGCACATTCACCGGCCTGAA..........................................................................	22	1	3.00	1.00	2.00	0.00
..........................................................................................................TATTGTACATTCACCGGCCTGA...........................................................................	22	1	3.00	0.00	3.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGC...........................................................................	22	1	3.00	0.00	3.00	0.00
..........................................................................................................TATTGCACATTCATCGGCCTGAAA.........................................................................	24	1	3.00	0.00	3.00	0.00
..........................................................................................................TATTGCACATTCACTGGCCTGA...........................................................................	22	1	3.00	0.00	3.00	0.00
..........................................................................................................AATTGCACATTCACCGGCCTGA...........................................................................	22	1	3.00	0.00	3.00	0.00
..........................................................................................................TATTGCACATTAACCGGCCTGA...........................................................................	22	1	3.00	0.00	3.00	0.00
..........................................................................................................TATTGCACATTCACCGGTCTGAA..........................................................................	23	1	3.00	0.00	3.00	0.00

droYak2

TTTAA----------------AAATA-----TCTCACTT-TCTAGATAGTTTTGCGGACGGTATCT-GCGTCAATATTT--C------------CTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACT---TGCAT----------------------------------------------CG-----	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..........................................................................................................TATTGCACATTCACCGGCCTGA...........................................................................	22	1	6252.00	5878.00	14.00	42.00	11.00	307.00
..........................................................................................................TATTGCACATTCACCGGCCTG............................................................................	21	1	653.00	545.00	1.00	13.00	1.00	93.00
..........................................................................................................TATTGCACATTCACCGGCCTGAA..........................................................................	23	1	221.00	199.00	0.00	1.00	0.00	21.00
..........................................................................................................TATTGCACATTCACCGGCCTGG...........................................................................	22	1	82.00	18.00	0.00	0.00	0.00	64.00
..........................................................................................................TATTGCACATTCACCGGCCTGT...........................................................................	22	1	77.00	25.00	0.00	22.00	2.00	28.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAA.........................................................................	24	1	70.00	56.00	1.00	4.00	0.00	9.00
..........................................................................................................TATTGCACATTCACCGGCCTGAT..........................................................................	23	1	57.00	21.00	0.00	3.00	1.00	32.00
..........................................................................................................TATTGCACATTCCCCCGCCTGA...........................................................................	22	2	24.50	24.00	0.00	0.00	0.50	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGC...........................................................................	22	1	41.00	38.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATTCACCGGCC..............................................................................	19	1	40.00	2.00	0.00	0.00	0.00	38.00
..........................................................................................................TATTGCACATTCACCAGCCTGA...........................................................................	22	2	12.00	12.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCT.............................................................................	20	1	20.00	16.00	0.00	3.00	0.00	1.00
..........................................................................................................TATTGCACCTTCACCGGCCTGA...........................................................................	22	1	18.00	11.00	0.00	0.00	0.00	7.00
...........................................................................................................ATTGCACATTCACCGGCCTGA...........................................................................	21	1	17.00	17.00	0.00	0.00	0.00	0.00
......................................................CGGACGGTATCT-GCGTCAATATT.............................................................................................................................	23	1	16.00	14.00	0.00	2.00	0.00	0.00
..........................................................................................................TATTGCACATTCAACGGCCTGA...........................................................................	22	1	15.00	15.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGACTGA...........................................................................	22	1	14.00	14.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCGCATTCACCGGCCTGA...........................................................................	22	1	14.00	14.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACACTCACCGGCCTGA...........................................................................	22	1	13.00	12.00	0.00	0.00	0.00	1.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAT.........................................................................	24	1	13.00	10.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATTCACCGGCCCGA...........................................................................	22	1	12.00	12.00	0.00	0.00	0.00	0.00
.........................................................................................................CTATTGCACATTCACCGGCCTGA...........................................................................	23	1	12.00	11.00	0.00	0.00	0.00	1.00
..........................................................................................................TATTGCACATTCACCGGCCTGATT.........................................................................	24	1	11.00	5.00	0.00	0.00	0.00	6.00
..........................................................................................................TATTGCACATTCCCCGGCCTGA...........................................................................	22	2	5.50	5.00	0.00	0.50	0.00	0.00
..........................................................................................................TATTGCACATTCACCTGCCTGA...........................................................................	22	2	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCATGA...........................................................................	22	1	10.00	10.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCCCCCGCCTG............................................................................	21	2	4.50	4.50	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGTAT.........................................................................	24	1	9.00	0.00	0.00	0.00	0.00	9.00
..........................................................................................................TATTGCACGTTCACCGGCCTGA...........................................................................	22	1	9.00	9.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGTT..........................................................................	23	1	9.00	0.00	0.00	0.00	0.00	9.00
..........................................................................................................TACTGCACATTCACCGGCCTGA...........................................................................	22	1	8.00	8.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCCGCCTGA...........................................................................	22	2	4.00	3.50	0.00	0.00	0.50	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGCA..........................................................................	23	1	8.00	8.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAAA........................................................................	25	1	8.00	7.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACATTCGCCGGCCTGA...........................................................................	22	2	3.50	3.50	0.00	0.00	0.00	0.00
..........................................................................................................TATCGCACATTCACCGGCCTGA...........................................................................	22	1	7.00	7.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTTA...........................................................................	22	1	7.00	6.00	0.00	0.00	0.00	1.00
..........................................................................................................TGTTGCACATTCACCGGCCTGA...........................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACTGGCCTGA...........................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
......................................................CGGACGGTATCT-GCGTCAATAT..............................................................................................................................	22	1	6.00	5.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCATATTCACCGGCCTGA...........................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGTCTGA...........................................................................	22	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGATA.........................................................................	24	1	6.00	6.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCCCCAGCCTGAAAA........................................................................	25	2	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAC..........................................................................	23	1	6.00	2.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACATTCACCGGCCTGTAA.........................................................................	24	1	5.00	0.00	0.00	0.00	0.00	5.00
..........................................................................................................TAGTGCACATTCACCGGCCTGA...........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGTA..........................................................................	23	1	5.00	0.00	0.00	0.00	0.00	5.00
..........................................................................................................CATTGCACATTCACCGGCCTGA...........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCAAATTCACCGGCCTGA...........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACAGGCCTGA...........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGTCCTGA...........................................................................	22	1	5.00	2.00	0.00	1.00	0.00	2.00
..............................................................................................................GCACATTCACCGGCCTGA...........................................................................	18	1	5.00	4.00	0.00	0.00	0.00	1.00
..........................................................................................................TATTGCACATTAACCGGCCTGA...........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGACCTGA...........................................................................	22	1	5.00	5.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATACACCGGCCTGA...........................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGGCTGA...........................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCCCCCGCCTGAA..........................................................................	23	2	2.00	2.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCCG............................................................................	21	1	4.00	4.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGAACATTCACCGGCCTGA...........................................................................	22	1	4.00	4.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGCAA.........................................................................	24	1	4.00	4.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAG.........................................................................	24	1	4.00	3.00	0.00	0.00	0.00	1.00
..........................................................................................................TATTGCACATTCxCCAGCCTGA...........................................................................	21	2	1.50	1.00	0.00	0.50	0.00	0.00
......................................................CGGACGGTATCT-GCGTCAATA...............................................................................................................................	21	1	3.00	1.00	1.00	1.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGC...............................................................................	18	1	3.00	2.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACATTCTCCAGCCTGA...........................................................................	22	2	1.50	1.50	0.00	0.00	0.00	0.00
..........................................................................................................TATTGTACATTCACCGGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCCCCGGCCTG............................................................................	21	2	1.50	1.50	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCCCATTCACCGGCCTGA...........................................................................	22	1	3.00	2.00	0.00	0.00	0.00	1.00
..........................................................................................................TATTACACATTCACCGGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAG..........................................................................	23	1	3.00	2.00	0.00	0.00	0.00	1.00
..........................................................................................................TATTGCACATTCATCGGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGAACATTCACCGGCCTGT...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGACCTG............................................................................	21	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TCTTGCACATTCACCGGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGACT.........................................................................	24	1	3.00	0.00	0.00	1.00	0.00	2.00
..........................................................................................................TATTGCACATTCACCGGAC..............................................................................	19	1	3.00	0.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCCCATTCACCGGCCTGC...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCTCATTCACCGGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCATCGGCCTGT...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................AATTGCACATTCACCGGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTCA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00	0.00

droEre2

TTGAAACC-----------------------CCTA-A-C-CCTAGATAGTTTTTCGGACGGTATCT-GCGTCAATATTT--C------------CTTGTTAGAATATATTGCACATTCACCGGCCTGAAAATATCAAGGACT---TACAT----------------------------------------------CA-----	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..........................................................................................................TATTGCACATTCACCGGCCTGA...........................................................................	22	1	921.00	859.00	1.00	2.00	59.00
..........................................................................................................TATTGCACATTCACCAGCCTGA...........................................................................	22	2	63.50	14.00	1.00	0.00	48.50
..........................................................................................................TATTGCACATTCACCGGCCTG............................................................................	21	1	105.00	72.00	0.00	1.00	32.00
..........................................................................................................TATTGCACATTCACCGGCCTGAA..........................................................................	23	1	40.00	34.00	0.00	0.00	6.00
..........................................................................................................TATTGCACATTCACCGGCCTTA...........................................................................	22	1	28.00	28.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGT...........................................................................	22	1	16.00	3.00	2.00	0.00	11.00
..........................................................................................................TATTGCACATTCACCAGCCTG............................................................................	21	2	7.50	0.00	2.00	0.00	5.50
..........................................................................................................TATTGCACATTCACCTGCCTGA...........................................................................	22	2	6.50	6.00	0.00	0.00	0.50
..........................................................................................................TATTGCACATTCCCCCGCCTGA...........................................................................	22	2	6.50	6.50	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAT..........................................................................	23	1	12.00	3.00	0.00	0.00	9.00
..........................................................................................................TATTGCACATTCACCCGCCTGA...........................................................................	22	2	5.00	5.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAA.........................................................................	24	1	8.00	8.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCT.............................................................................	20	1	8.00	2.00	0.00	0.00	6.00
..........................................................................................................TATTGCACATTCACCGGCCTGC...........................................................................	22	1	7.00	7.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGAAT.........................................................................	24	1	6.00	3.00	0.00	0.00	3.00
..........................................................................................................TATTACACATTCACCGGCCTGA...........................................................................	22	1	6.00	5.00	0.00	0.00	1.00
..........................................................................................................TATTTCACATTCACCGGCCTGA...........................................................................	22	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGTCCTGA...........................................................................	22	1	6.00	6.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCAGCCTGT...........................................................................	22	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCACATTCTCCAGCCTGA...........................................................................	22	2	2.50	1.50	0.00	0.50	0.50
..........................................................................................................TATTGCACATTCACCAGCCTGAA..........................................................................	23	2	2.50	0.00	0.50	0.00	2.00
..........................................................................................................TATTGCACATTCACCGGCCTCA...........................................................................	22	1	5.00	5.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGCCCTGA...........................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................................TATTGCACCTTCACCGGCCTGA...........................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGCCCTTA...........................................................................	22	1	4.00	4.00	0.00	0.00	0.00
......................................................CGGACGGTATCT-GCGTCAATATT.............................................................................................................................	23	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGG...........................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCGGCCTGTT..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATTCACCTGCCTTA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCCCCAGCCTGAAAA........................................................................	25	2	1.50	1.00	0.00	0.00	0.50
..........................................................................................................TATTCCACATTCACCGGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATCCCCCGGCCT.............................................................................	20	2	1.50	0.00	0.00	1.50	0.00
..........................................................................................................TATTTCACATTCACCTGCCTGA...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................................TATTGCACATTCACCCGCCTG............................................................................	21	2	1.50	1.00	0.00	0.00	0.50
..........................................................................................................TATTGCACATTCACCGGCCCGA...........................................................................	22	1	3.00	2.00	0.00	0.00	1.00
..........................................................................................................TATTGCACATTCACCATCCTGA...........................................................................	22	2	1.50	0.50	0.00	0.00	1.00

droAna3

CAGCGATCGCTATCTGAGAGAAA--------TATTTGTT-GCCAGATTATCTTCAGGACGGTATTT-GTGTCAATATGG--AT-------------ATTTCAAACATATTGCACTTATACCGGCCTGATGATCTCCGGCGCT--CGTCAT----------------------------------------------CTGTGAC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..........................................................................................................TATTGCACTTATACCGGCCTGA...........................................................................	22	1	3148.00	31.00	19.00	29.00	3069.00
..........................................................................................................TATTGCACTTATACCGGCCTG............................................................................	21	1	299.00	8.00	6.00	5.00	280.00
..........................................................................................................TATTGCACTTATACCGGCCTGAA..........................................................................	23	1	235.00	0.00	2.00	1.00	232.00
..........................................................................................................TATTGCACTTATACCGGCCTTA...........................................................................	22	1	158.00	0.00	0.00	1.00	157.00
......................................................AGGACGGTATTT-GTGTCAATATG.............................................................................................................................	23	1	91.00	31.00	6.00	2.00	52.00
..........................................................................................................TATTGCACTTATACCGGCCTGAAA.........................................................................	24	1	87.00	0.00	0.00	0.00	87.00
..........................................................................................................TATTGCACTTATACCTGCCTGA...........................................................................	22	1	66.00	2.00	0.00	0.00	64.00
..........................................................................................................TATTGCACTTATACCGTCCTGA...........................................................................	22	1	60.00	0.00	1.00	2.00	57.00
..........................................................................................................TATTGCACTTATACCGGCCTGC...........................................................................	22	1	39.00	0.00	0.00	0.00	39.00
..........................................................................................................TATTGCACTTATACCGGCCT.............................................................................	20	1	38.00	0.00	1.00	0.00	37.00
..........................................................................................................TATTGCACTTATACCGGCCTGT...........................................................................	22	1	34.00	2.00	0.00	2.00	30.00
..........................................................................................................TATTGCACTTATACCCGCCTGA...........................................................................	22	1	29.00	0.00	0.00	1.00	28.00
..........................................................................................................TATTGCACTTATACCTGCCTTA...........................................................................	22	1	18.00	0.00	0.00	0.00	18.00
..........................................................................................................TATTGCACTTATACCAGCCTGA...........................................................................	22	1	16.00	1.00	0.00	0.00	15.00
..........................................................................................................TATTGCACTTATACCGCCCTGA...........................................................................	22	1	16.00	0.00	0.00	0.00	16.00
......................................................AGGACGGTATTT-GTGTCAATAT..............................................................................................................................	22	1	15.00	3.00	0.00	0.00	12.00
..........................................................................................................TATTGCACTTATACCGGCCTCA...........................................................................	22	1	14.00	0.00	0.00	0.00	14.00
..........................................................................................................TATTGCACTTATACCGGCCTGAAAA........................................................................	25	1	14.00	0.00	0.00	1.00	13.00
..........................................................................................................TATTGCACTTATACCGGCCTGAT..........................................................................	23	1	13.00	5.00	1.00	0.00	7.00
..........................................................................................................TATTTCACTTATACCGGCCTGA...........................................................................	22	1	12.00	0.00	0.00	0.00	12.00
..........................................................................................................TATTGCACTTATACCGGCCTGCA..........................................................................	23	1	12.00	0.00	0.00	0.00	12.00
......................................................AGGACGGTATTT-GTGTCAATATT.............................................................................................................................	23	1	12.00	0.00	0.00	0.00	12.00
..........................................................................................................TATTGCACTTATACCGGCCTTAA..........................................................................	23	1	12.00	0.00	0.00	0.00	12.00
..........................................................................................................TATTGCACTTATACCGGCCTGTA..........................................................................	23	1	11.00	0.00	0.00	0.00	11.00
..........................................................................................................TATTGCACTTATACCGTCCTTA...........................................................................	22	1	11.00	0.00	0.00	0.00	11.00
..........................................................................................................TATTGCACTTATACCCGCCTCA...........................................................................	22	1	9.00	0.00	0.00	0.00	9.00
..........................................................................................................TATTGCACTTATACCGGCC..............................................................................	19	1	9.00	0.00	0.00	0.00	9.00
..........................................................................................................TATTGCACTTATACCGGCCCGA...........................................................................	22	1	9.00	0.00	0.00	0.00	9.00
......................................................AGGACGGTATTT-GTGTCAATA...............................................................................................................................	21	1	8.00	1.00	2.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCGACCTGA...........................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..........................................................................................................TATTGCGCTTATACCGGCCTGA...........................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..........................................................................................................TATTGCACTTATACCCGCCTTA...........................................................................	22	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................................TATTGCACTTATACCGGC...............................................................................	18	1	7.00	1.00	0.00	2.00	4.00
..........................................................................................................TATTGCACTTATACCGTCCTG............................................................................	21	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................................TATGGCACTTATACCGGCCTGA...........................................................................	22	1	7.00	0.00	1.00	0.00	6.00
..........................................................................................................TATTGCACTTATACCGGCCTGG...........................................................................	22	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................................TATTCCACTTATACCGGCCTGA...........................................................................	22	1	7.00	0.00	0.00	0.00	7.00
..........................................................................................................TATTGCACTTATACCGGCCA.............................................................................	20	1	6.00	0.00	0.00	0.00	6.00
..........................................................................................................TATTGCACTTATACCGGTCTGA...........................................................................	22	1	6.00	0.00	0.00	1.00	5.00
..........................................................................................................CATTGCACTTATACCGGCCTGA...........................................................................	22	1	6.00	0.00	0.00	0.00	6.00
..........................................................................................................TATTGCACTTATACCTTCCTGA...........................................................................	22	1	6.00	0.00	0.00	0.00	6.00
......................................................AGGACGGTATTT-GTGTCAATATA.............................................................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................GATTGCACTTATACCGGCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCTGCCTG............................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTCTACCGGCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TACTGCACTTATACCGGCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TAGTGCACTTATACCGGCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCGGCCTGAG..........................................................................	23	1	5.00	1.00	1.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCATCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCGGCCTGAAC.........................................................................	24	1	5.00	0.00	0.00	0.00	5.00
...........................................................................................................ATTGCACTTATACCGGCCTGA...........................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATAACGGCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCGTCCTGAA..........................................................................	23	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATATCGGCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCCGCCTG............................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCGGCCTT............................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCTGCCTCA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATCGCACTTATACCGGCCTGA...........................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACTTATACCGGCCTAA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCCCTTATACCGGCCTGA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACTTACACCGGCCTGA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACTTATACCGGCCCG............................................................................	21	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACTTATACCGGACTGA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTACACTTATACCGGCCTGA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACTTATACCGGCCCTA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGTACTTATACCGGCCTGA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACCTATACCGGCCTGA...........................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACTTATACCGGCCTTT...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTACACTTATACCGTCCTGA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.........................................................................................................CTATTGCACTTATACCGGCCTGA...........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCGTCCTGC...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCGGCCTGAAG.........................................................................	24	1	3.00	0.00	1.00	0.00	2.00
..........................................................................................................TATTGCACTTATACCGGCCTGATA.........................................................................	24	1	3.00	0.00	0.00	2.00	1.00
..........................................................................................................TATTGCACTTATACCGTCCTT............................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACTGGCCTGA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................AATTGCACTTATACCGGCCTGA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCGCCCTCA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCGGCATGA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCGTCCTGT...........................................................................	22	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................................TATTGCAATTATACCGGCCTGA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTAGACCGGCCTGA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTTCACTTATACCTGCCTGA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
.................................TTTGTT-GCCAGATTATCTTC.....................................................................................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATATCGGCCTTA...........................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCCGCCTGAA..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATAGCACTTATACCGGCCTGA...........................................................................	22	1	3.00	0.00	0.00	1.00	2.00
..........................................................................................................TATTGCACTTATACCTGCCTGAA..........................................................................	23	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACTTATACCGGCCTGACA.........................................................................	24	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTCCACTTATACCGGCCTG............................................................................	21	1	3.00	0.00	0.00	0.00	3.00

dp4

CATCG----------------AGCTG-----CTTTGATT-TGTAGG-----------CCGTGGTTC-TTGCAAATACGG--AT---------------TCATAACGTATTGCACTAGCCCCGGTCCAAAAAACAATAGCAACGCCGGCAA----------------------------------------------CAGCAAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..........................................................................................................TATTGCACTAGCCCCGGTCCA............................................................................	21	1	219.00	70.00	109.00	40.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCAA...........................................................................	22	1	65.00	19.00	36.00	10.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCC.............................................................................	20	1	58.00	15.00	34.00	9.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTC..............................................................................	19	1	47.00	27.00	2.00	18.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCC............................................................................	21	1	32.00	21.00	4.00	7.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCG.............................................................................	20	1	28.00	22.00	0.00	6.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCT.............................................................................	20	1	26.00	21.00	1.00	4.00	0.00
...........................................AGG-----------CCGTGGTTC-TTGCAAATA...............................................................................................................................	21	1	16.00	15.00	0.00	1.00	0.00
...........................................AGG-----------CCGTGGTTC-TTGCAAATACG.............................................................................................................................	23	1	14.00	10.00	0.00	4.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCAAA..........................................................................	23	1	9.00	2.00	7.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCCC...........................................................................	22	1	7.00	5.00	0.00	2.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCA.............................................................................	20	1	7.00	6.00	0.00	1.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCAAAA.........................................................................	24	1	5.00	1.00	4.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTTT.............................................................................	20	1	5.00	2.00	0.00	3.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCT............................................................................	21	1	4.00	4.00	0.00	0.00	0.00
...........................................AGG-----------CCGTGGTTC-TTGCAAAT................................................................................................................................	20	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTTCG............................................................................	21	1	3.00	1.00	0.00	2.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGGCCA............................................................................	21	1	3.00	1.00	2.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGTTCC.............................................................................	20	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCCA...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGCCCA............................................................................	21	1	2.00	1.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGT...............................................................................	18	1	2.00	2.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCG............................................................................	21	1	2.00	0.00	1.00	1.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCAT...........................................................................	22	1	2.00	0.00	2.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTTA.............................................................................	20	1	2.00	2.00	0.00	0.00	0.00
...........................................AGG-----------CCGTGGTTC-TTGCAAATAC..............................................................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGTTCT.............................................................................	20	1	2.00	2.00	0.00	0.00	0.00
..........................................................................................................AATTGCACTAGCCCCGGCC..............................................................................	19	2	0.50	0.00	0.50	0.00	0.00
..........................................................................................................TATTGCATTAGCCCCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGCC..............................................................................	19	2	0.50	0.00	0.00	0.50	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCTT............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCAG...........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
...........................................................................................................ATTGCACTAGCCCCGGTCCAA...........................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTGGCCCCGGTCG.............................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCTC............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................AATTGCACTAGCCCCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................AATTGCACTAGCCCCGGTCG.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTGCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCAATAGCCCCGGTCCAC...........................................................................	22	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCTCA...........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTCGCCCCGGTCCAA...........................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCGCTAGCCCCGGTCCC............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACCAGCCCCGGTCCC............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................TATTGCACTAGTCCCGGCC..............................................................................	19	4	0.25	0.00	0.25	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGCCC.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCATT..........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTA..............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCAAA...........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTTCA............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGAACTAGCCCCGGTCCTA...........................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................ATTGCACTAGCCCCGGTCCA............................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCTT...........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTGGCCCCGGTCC.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGxxCTAGCCCCGGTCCAA...........................................................................	20	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGGACGAGCCCCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCAC...........................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCTGGTCC.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGTTA..............................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................TATTGCACTAGTCCCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
.........................................................................................................CTATTGCACTAGCCCCGGTCCAA...........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGTTCCT............................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..........................................................................................................TAGTGAACTAGCCCCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGACA.............................................................................	20	1	1.00	0.00	0.00	1.00	0.00
.........................................................................................................GTATTGCACTAGCGTCGG................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TAGTGCACTAGCCCCGGTCT.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAACCCCGGTCCAA...........................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................AATTGCACTAGTCCCGGTC..............................................................................	19	2	0.50	0.00	0.50	0.00	0.00
..........................................................................................................TATTGCCCTAGCCCCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTACCCCCGGCCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGGC..............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCTGTC..............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGGCCCGGTCCAC...........................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGCCT.............................................................................	20	2	0.50	0.00	0.50	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTCCCAG..........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCACCGATCCA............................................................................	21	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................TATTGCACTAGCCTCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCTGTCC.............................................................................	20	1	1.00	0.00	1.00	0.00	0.00
...........................................AGG-----------CCGTGGTTC-TTGCAAATACC.............................................................................................................................	23	1	1.00	0.00	0.00	1.00	0.00
..........................................................................................................TAGTGCACTAGCCCCGGTCCA............................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..........................................................................................................TATTGCACTAGCCCCGGTTAA............................................................................	21	1	1.00	1.00	0.00	0.00	0.00

droPer1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

TAATT----------------TA----------TAGGCT-TCGGG------------------GTT-GTTGCAAAATGG--TTTATT-----CTAATAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAAC--TTTT---G-----------AACAT---CCC----------------------------GGGTGGG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..........................................................................................................TATTGCACCTTTTCCGGCCTCT...........................................................................	22	1	2632.00	17.00	2585.00	13.00	17.00
..........................................................................................................TATTGCACCTTTTCCGGCCTC............................................................................	21	1	744.00	11.00	716.00	4.00	13.00
..........................................................................................................TATTGCACCTTTTCCGGCCT.............................................................................	20	1	679.00	11.00	649.00	6.00	13.00
..........................................................................................................TATTGCACCTTTTCCGGCCTCTA..........................................................................	23	1	55.00	0.00	53.00	1.00	1.00
..........................................................................................................TATTGCACCTTTTCCGGCCTCA...........................................................................	22	1	15.00	0.00	15.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTCTT..........................................................................	23	1	12.00	1.00	11.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCTGCCTCT...........................................................................	22	1	11.00	0.00	11.00	0.00	0.00
.........................................................................................................ATATTGCACCTTTTCCGGCCTC............................................................................	22	1	11.00	0.00	11.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTA............................................................................	21	1	11.00	0.00	11.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCC..............................................................................	19	1	11.00	0.00	8.00	0.00	3.00
..........................................................................................................TATTGCACCTTTTCCGTCCTCT...........................................................................	22	1	11.00	0.00	11.00	0.00	0.00
..................................AGGCT-TCGGG------------------GTT-GTTGCAAAATG.............................................................................................................................	24	1	9.00	0.00	5.00	1.00	3.00
.........................................................................................................ATATTGCACCTTTTCCGGCCT.............................................................................	21	1	8.00	0.00	8.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCATCT...........................................................................	22	1	7.00	0.00	7.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTCTAAA........................................................................	25	1	7.00	0.00	6.00	0.00	1.00
..........................................................................................................TATTGCACCTTTTCAGGCCTCT...........................................................................	22	1	7.00	0.00	7.00	0.00	0.00
.........................................................................................................CTATTGCACCTTTTCCGGCCTCT...........................................................................	23	1	7.00	0.00	7.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGCCCTCT...........................................................................	22	1	6.00	0.00	6.00	0.00	0.00
...........................................................................................................ATTGCACCTTTTCCGGCCTCT...........................................................................	21	1	5.00	0.00	5.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTT............................................................................	21	1	5.00	0.00	5.00	0.00	0.00
..........................................................................................................TATTGCACCCTTTCCGGCCTC............................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCCTTTCCGGCCTCT...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTAT...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCTGGCCTCT...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTCC...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCxTTTCCGGCCTCT...........................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCAGCCTCT...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCTTTCCCGGCCTCT...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACATTTTCCGGCCTCT...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCTGCCTC............................................................................	21	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCACCTCTTCCGGCCTCT...........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..........................................................................................................TATTGCGCCTTTTCCGGCCTCT...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCATC............................................................................	21	1	3.00	1.00	2.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGACTCT...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGCACTTTTTCCGGCCTCT...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGCACCTTTCCCGGCCTC............................................................................	21	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTTCACCTTTTCCGGCCTCT...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGAACCTTTTCCGGCCTCT...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTCTC..........................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGCACCTTTTCCGGCCTCG...........................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..........................................................................................................TACTGCACCTTTTCCGGCCTCT...........................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droVir3

AAGCT----------------GGAAAAACTAGTGCGTCC-GCATGACCATTTTAAGGACGGTATTT-GTGACAATATGT--GC-AGTTAAATCAATTTGTTTAGCATATTGCACATCTCCCGGCCTAAAAATGAACCGTGCTCTCTTCGATATATGGAACATTAAAAC----------------------------AATTTGG	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..........................................................................................................TATTGCACATCTCCCGGCCTA............................................................................	21	2	756.00	15.50	4.50	545.00	185.50	5.50
..........................................................................................................TATTGCACATCTCCCGGCCTAT...........................................................................	22	2	630.50	5.00	3.00	575.50	44.50	2.50
..........................................................................................................TATTGCACATCTCCCGGCCT.............................................................................	20	2	465.00	10.00	2.50	374.50	74.50	3.50
......................................................AGGACGGTATTT-GTGACAATATG.............................................................................................................................	23	1	746.00	14.00	1.00	163.00	560.00	8.00
..........................................................................................................TATTGCACATCTCCCGGCCTAA...........................................................................	22	2	285.00	14.00	4.00	231.50	35.00	0.50
......................................................AGGACGGTATTT-GTGACAATAT..............................................................................................................................	22	1	508.00	3.00	0.00	27.00	465.00	13.00
..........................................................................................................TATTGCACATCTCCCGGCCTAAA..........................................................................	23	2	123.50	2.00	0.50	99.00	20.00	2.00
......................................................AGGACGGTATTT-GTGACAATA...............................................................................................................................	21	1	113.00	0.00	0.00	0.00	113.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTATA..........................................................................	23	2	50.50	0.00	0.00	40.50	9.00	1.00
..........................................................................................................TATTGCACATCTCCCGGCC..............................................................................	19	2	35.50	0.00	0.50	3.50	31.00	0.50
..........................................................................................................TATTGCACATCTCCCGGCCTAAAA.........................................................................	24	2	26.50	0.00	0.00	23.00	3.00	0.50
..........................................................................................................TATTGCACATCTCCCGGCCTATAA.........................................................................	24	2	20.00	0.00	0.50	18.00	1.00	0.50
..........................................................................................................TATTGCACATCTCCCCGCCTA............................................................................	21	2	19.50	0.00	0.00	19.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTATAAA........................................................................	25	2	19.50	0.00	0.00	18.50	1.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTATC..........................................................................	23	2	19.00	2.00	0.00	3.50	13.50	0.00
......................................................AGGACGGTATTT-GTGACAATC...............................................................................................................................	21	1	31.00	0.00	0.00	0.00	31.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTCT...........................................................................	22	2	15.00	0.00	0.00	14.50	0.50	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTC............................................................................	21	2	15.00	3.00	0.00	5.50	6.00	0.50
......................................................AGGACGGTATTT-GTGACAATATA.............................................................................................................................	23	1	29.00	0.00	0.00	1.00	27.00	1.00
......................................................AGGACGGTATTT-GTGACAATATCC--..........................................................................................................................	24	1	28.00	0.00	0.00	0.00	28.00	0.00
..........................................................................................................TATTGCACATCTCCCCGCCTAT...........................................................................	22	2	13.00	0.00	0.00	13.00	0.00	0.00
......................................................AGGACGGTATTT-GTGACAATATGT--..........................................................................................................................	24	1	25.00	0.00	0.00	10.00	15.00	0.00
..........................................................................................................TATTGCACATCTCCCTGCCTA............................................................................	21	2	12.50	0.00	0.00	12.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAAAAA........................................................................	25	1	24.00	0.00	0.00	21.00	2.00	1.00
..........................................................................................................TATTGCACATCTCCCGGCCTATT..........................................................................	23	2	11.00	0.50	0.00	9.50	1.00	0.00
..........................................................................................................TATTGCACATCTCCCGTCCTAT...........................................................................	22	2	10.50	0.00	0.00	10.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTT............................................................................	21	2	10.50	0.00	0.00	2.50	8.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTCA...........................................................................	22	2	10.00	0.00	0.00	10.00	0.00	0.00
......................................................AGGACGGTATTT-GTGACAATATT.............................................................................................................................	23	1	20.00	0.00	0.00	14.00	6.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCC.............................................................................	20	2	9.50	0.00	0.00	3.00	6.50	0.00
......................................................AGGACGGTATTT-GTGACAATATC.............................................................................................................................	23	1	19.00	0.00	0.00	0.00	19.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAC...........................................................................	22	2	9.00	0.00	0.00	5.00	4.00	0.00
..........................................................................................................TATTGCACATCTCCCGTCCTA............................................................................	21	2	8.50	0.00	0.00	8.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTG............................................................................	21	2	8.50	0.00	0.00	3.50	5.00	0.00
..........................................................................................................TATTGCACATCTCCCGGC...............................................................................	18	2	7.50	0.00	0.00	0.50	7.00	0.00
..........................................................................................................TATTGCACATCTCCCCGCCT.............................................................................	20	2	7.00	0.50	0.00	6.50	0.00	0.00
......................................................AGGACGGTATTT-GTGACAATATGC--CC-.......................................................................................................................	26	1	13.00	0.00	0.00	0.00	13.00	0.00
......................................................AGGACGGTATTT-GTGACAATATGA--..........................................................................................................................	24	1	13.00	0.00	0.00	5.00	8.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCG.............................................................................	20	2	6.00	0.50	0.00	0.50	5.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTATG..........................................................................	23	2	6.00	0.00	0.00	1.50	4.50	0.00
..........................................................................................................TATTGCACATCTCCCTGCCTAT...........................................................................	22	2	6.00	0.00	0.00	6.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGTCCT.............................................................................	20	2	5.50	0.00	0.00	5.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCCGCCTAA...........................................................................	22	2	5.50	0.00	0.00	5.50	0.00	0.00
......................................................AGGACGGTATTT-GTGACAAT................................................................................................................................	20	1	11.00	0.00	0.00	0.00	10.00	1.00
......................................................AGGACGGTATTT-GTGACAATATGC--C.........................................................................................................................	25	1	10.00	0.00	0.00	0.00	10.00	0.00
......................................................AGGACGGTATTT-GTGACA..................................................................................................................................	18	1	10.00	0.00	0.00	0.00	10.00	0.00
..........................................................................................................TATTGCACATCTCCCTGCCT.............................................................................	20	2	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCAGCCTA............................................................................	21	2	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGCCCTA............................................................................	21	2	5.00	0.50	0.50	4.00	0.00	0.00
......................................................AGGACGGTATTT-GTGACAA.................................................................................................................................	19	1	10.00	0.00	0.00	0.00	10.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAAG..........................................................................	23	2	4.50	0.00	0.00	3.00	1.50	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTATAAAA.......................................................................	26	2	4.50	0.00	0.00	4.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAG...........................................................................	22	2	4.50	0.00	0.00	1.00	3.50	0.00
..........................................................................................................TATTTCACATCTCCCGGCCTAT...........................................................................	22	2	4.50	0.00	0.00	4.50	0.00	0.00
..........................................................................................................TATTGCACGTCTCCCGGCCTAT...........................................................................	22	2	4.50	0.00	0.00	4.50	0.00	0.00
......................................................AGGACGGTATTT-TTGACAATATG.............................................................................................................................	23	1	9.00	0.00	0.00	5.00	4.00	0.00
......................................................AGGACGGTATTT-TTGACAATAT..............................................................................................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAAT..........................................................................	23	2	4.00	0.00	0.00	4.00	0.00	0.00
......................................................AGGACGGTATTT-TTGACAATA...............................................................................................................................	21	1	8.00	0.00	0.00	0.00	8.00	0.00
..........................................................................................................TATTGCACATCTCCCAGCCTAT...........................................................................	22	2	3.50	0.00	0.00	3.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCA.............................................................................	20	2	3.50	0.00	0.50	3.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTACA..........................................................................	23	2	3.50	0.00	0.00	3.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTCAA..........................................................................	23	2	3.50	0.00	0.00	3.50	0.00	0.00
......................................................AGGACGGTATTT-GTGACAATATGT--G.........................................................................................................................	25	1	6.00	4.00	0.00	2.00	0.00	0.00
......................................................AGGACGGTATTT-GTGACAATAAA.............................................................................................................................	23	1	6.00	0.00	0.00	1.00	5.00	0.00
......................................................AGGACGGTCTTT-GTGACAATATG.............................................................................................................................	23	1	6.00	0.00	0.00	1.00	5.00	0.00
......................................................AGGACGGTATTT-GTGACAATCC..............................................................................................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
..........................................................................................................TATTTCACATCTCCCGGCCTA............................................................................	21	2	3.00	0.00	0.00	3.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGACCT.............................................................................	20	2	2.50	1.00	0.00	1.50	0.00	0.00
..........................................................................................................TATTGCGCATCTCCCGGCCT.............................................................................	20	2	2.50	0.00	0.00	2.50	0.00	0.00
.........................................................................................................CTATTGCACATCTCCCGGCCTAT...........................................................................	23	2	2.50	0.00	0.00	2.50	0.00	0.00
......................................................AGGACGGTATTT-GTTACAATATG.............................................................................................................................	23	1	5.00	0.00	0.00	5.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAAAC.........................................................................	24	2	2.50	0.00	0.00	1.50	1.00	0.00
..........................................................................................................TATTGCACCTCTCCCGGCCTA............................................................................	21	2	2.50	0.00	0.00	0.50	2.00	0.00
..........................................................................................................TATTGCACATCTCCCTGCCTAA...........................................................................	22	2	2.50	0.00	0.00	2.50	0.00	0.00
..........................................................................................................TATTGCACCTCTCCCGGCCTAT...........................................................................	22	2	2.50	0.00	0.00	2.00	0.50	0.00
..........................................................................................................TATTGCACATCTCCCGTCCTAA...........................................................................	22	2	2.50	0.00	0.00	2.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGCCCT.............................................................................	20	2	2.00	0.00	0.00	2.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTATCA.........................................................................	24	2	2.00	0.50	0.00	1.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGCCCTAT...........................................................................	22	2	2.00	0.00	0.00	2.00	0.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAAAAAA.......................................................................	26	1	4.00	0.00	0.00	4.00	0.00	0.00
......................................................AGGACGGTATTT-GTGACAATATGA--A.........................................................................................................................	25	1	4.00	0.00	0.00	2.00	2.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTCTA..........................................................................	23	2	2.00	0.00	0.00	2.00	0.00	0.00
......................................................AGGACGTTATTT-GTGACAATATG.............................................................................................................................	23	1	4.00	0.00	0.00	3.00	1.00	0.00
......................................................AGGACGGTATTT-GTGACAATATGC--..........................................................................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTAATC.........................................................................	24	1	4.00	0.00	0.00	0.00	4.00	0.00
......................................................AGGGCGGTATTT-GTGACAATATG.............................................................................................................................	23	1	4.00	0.00	0.00	0.00	4.00	0.00
......................................................AGGACTGTATTT-GTGACAATATG.............................................................................................................................	23	1	4.00	0.00	0.00	1.00	3.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCCAT...........................................................................	22	2	2.00	0.00	0.00	1.50	0.50	0.00
..........................................................................................................TATTGCACATCTCCCGGCCGA............................................................................	21	2	2.00	0.00	0.00	2.00	0.00	0.00
..........................................................................................................TCTTGCACATCTCCCGGCCTAT...........................................................................	22	2	2.00	0.00	0.00	2.00	0.00	0.00
..........................................................................................................TATTGCGCATCTCCCGGCCTA............................................................................	21	2	2.00	0.00	0.00	1.50	0.50	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTATAAC........................................................................	25	2	1.50	0.00	0.00	1.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCTTCCTA............................................................................	21	2	1.50	0.00	0.00	1.50	0.00	0.00
......................................................ATGACGGTATTT-GTGACAATATG.............................................................................................................................	23	1	3.00	0.00	0.00	1.00	2.00	0.00
..........................................................................................................TATTGCACGTCTCCCGGCCTA............................................................................	21	2	1.50	0.00	0.00	1.50	0.00	0.00
......................................................AGGACGGTATTT-GTGGCAATAT..............................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..........................................................................................................TATTGCACATCTCCCGGCCTCC...........................................................................	22	2	1.50	0.00	0.00	0.50	1.00	0.00
..........................................................................................................TATTGCACATCTCCCCGCCTATA..........................................................................	23	2	1.50	0.00	0.00	1.50	0.00	0.00
..........................................................................................................TATTGCACATCTCCCTACCTA............................................................................	21	2	1.50	0.00	0.00	1.50	0.00	0.00
..........................................................................................................CATTGCACATCTCCCGGCCTA............................................................................	21	4	0.75	0.00	0.00	0.50	0.25	0.00

droMoj3

AAACG----------------AAAAATG---TCAA-ATTTTCAGCTGCGTTTGCAGGACGGTATTT-GTGACAATATGA--ATTATTGAAATCAATTTATTCAGCATATTGCACATCTCCCGGCCTATAAAACAGTTGTGAGCCCGTCGATTT-----------AAATGATTTGTGTATTTAAAATAAATTTTCACCA-----	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..........................................................................................................TATTGCACATCTCCCGGCCTAT...........................................................................	22	2	1307.00	28.50	8.00	5.00	1265.50
..........................................................................................................TATTGCACATCTCCCGGCCTA............................................................................	21	2	1111.00	54.00	8.50	10.50	1038.00
..........................................................................................................TATTGCACATCTCCCGGCCT.............................................................................	20	2	599.00	94.00	22.00	14.00	469.00
..........................................................................................................TATTGCACATCTCCCGGCCTAC...........................................................................	22	2	347.50	9.00	1.50	2.00	335.00
..........................................................................................................TATTGCACATCTCCCGGCCTATA..........................................................................	23	2	137.00	1.50	0.00	0.00	135.50
..........................................................................................................TATTGCACATCTCCCGGCCTACA..........................................................................	23	2	111.00	1.00	1.50	1.00	107.50
......................................................AGGACGGTATTT-GTGACAATATG.............................................................................................................................	23	1	174.00	19.00	2.00	0.00	153.00
..........................................................................................................TATTGCACATCTCCCGGCCTATAAA........................................................................	25	1	97.00	19.00	3.00	0.00	75.00
..........................................................................................................TATTGCACATCTCCCGGCCTATAA.........................................................................	24	2	45.00	0.50	0.50	0.50	43.50
..........................................................................................................TATTGCACATCTCCCGGCCTAA...........................................................................	22	2	40.50	1.00	0.50	0.50	38.50
......................................................AGGACGGTATTT-GTGACAATAT..............................................................................................................................	22	1	78.00	1.00	0.00	1.00	76.00
..........................................................................................................TATTGCACATCTCCCGGCCTCT...........................................................................	22	2	25.00	0.00	0.00	0.00	25.00
..........................................................................................................TATTGCACATCTCCCGGCCTAAA..........................................................................	23	2	12.50	2.00	0.00	0.50	10.00
..........................................................................................................TATTGCACACCTCCCGGCCTA............................................................................	21	2	11.50	0.00	0.00	0.00	11.50
..........................................................................................................TATTGCACATCTCCCGGCCTATAAAA.......................................................................	26	1	20.00	6.00	0.00	0.00	14.00
..........................................................................................................TATTGCACATCTCCCGGCCTC............................................................................	21	2	10.00	3.00	0.50	0.00	6.50
..........................................................................................................TATTGCACACCTCCCGGCCTAT...........................................................................	22	2	9.50	0.50	0.00	0.00	9.00
..........................................................................................................TATTGCACATCTCCCGGCCTATT..........................................................................	23	2	9.50	0.50	0.50	0.00	8.50
..........................................................................................................TATTGCACATCTCCCGGCCTT............................................................................	21	2	8.00	2.50	0.50	0.00	5.00
..........................................................................................................TATTGCACATCTCCCCGCCTA............................................................................	21	2	7.50	0.00	0.00	0.00	7.50
..........................................................................................................TATTGCACATCTCCCGGCC..............................................................................	19	2	7.50	1.00	0.50	0.00	6.00
..........................................................................................................TATTGCACATCTCCCTGCCTA............................................................................	21	2	6.50	0.00	0.50	0.00	6.00
..........................................................................................................TATTGCACATCTCCCAGCCTAT...........................................................................	22	2	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACATCTCCCGGCCTACAA.........................................................................	24	2	5.00	0.50	0.00	0.00	4.50
..........................................................................................................TATTGCACATCTCCCCGCCTAT...........................................................................	22	2	4.50	0.00	0.00	0.00	4.50
...........................................................................................................ATTGCACATCTCCCGGCCTA............................................................................	20	2	4.50	2.00	0.00	0.00	2.50
..........................................................................................................TATTGCACATCGCCCGGCCTAT...........................................................................	22	2	4.50	0.00	0.00	0.00	4.50
.........................................................................................................CTATTGCACATCTCCCGGCCTAT...........................................................................	23	2	4.50	0.00	0.00	0.00	4.50
..........................................................................................................TATTGCACATCTCCCGGCCTTT...........................................................................	22	2	4.50	1.00	0.00	0.00	3.50
..........................................................................................................TATTGCACATCTCCCTGCCTAT...........................................................................	22	2	4.00	0.00	0.00	0.00	4.00
..........................................................................................................TATTGCACATCTCCCAGCCTA............................................................................	21	2	4.00	0.50	0.00	0.00	3.50
..........................................................................................................TAGTGCACATCTCCCGGCCTA............................................................................	21	2	3.50	0.00	0.50	0.00	3.00
..........................................................................................................TATTGCACATCTCCCGGACTA............................................................................	21	2	3.50	0.00	0.00	0.00	3.50
..........................................................................................................TATTGCACATCTCCCGGCCTACAAAA.......................................................................	26	2	3.50	2.00	0.50	0.50	0.50
..........................................................................................................TATTGCACATCTCCCGGCCTAG...........................................................................	22	2	3.50	1.50	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTCCCGGCCTATC..........................................................................	23	2	3.50	2.50	0.00	0.00	1.00
..........................................................................................................TATTGCGCATCTCCCGGCCTAT...........................................................................	22	2	3.50	0.00	0.00	0.00	3.50
..........................................................................................................TATTGCACATCTCCCGGCCTAAAA.........................................................................	24	2	3.50	0.00	0.00	0.00	3.50
..........................................................................................................TATTGCACATCTCCCGGCCTCC...........................................................................	22	2	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATATCCCGGCCTAT...........................................................................	22	2	3.00	0.00	0.00	0.00	3.00
.........................................................................................................ATATTGCACATCTCCCGGCCT.............................................................................	21	2	3.00	0.00	0.50	0.00	2.50
..........................................................................................................TATTGCACATCTCCCGGCATAT...........................................................................	22	2	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATCTCCAGGCCTA............................................................................	21	2	3.00	0.00	0.50	0.00	2.50
......................................................AGGACGGTATTT-GTGACAATATGA--A.........................................................................................................................	25	1	6.00	0.00	0.00	0.00	6.00
..........................................................................................................TATTGCACACCTCCCGGCCTATA..........................................................................	23	2	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACGTCTCCCGGCCTAT...........................................................................	22	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCACATCTCCCGGACTAT...........................................................................	22	2	2.50	0.00	0.50	0.00	2.00
..........................................................................................................TATTGCACATCTCCCGGCCTATG..........................................................................	23	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCACATCTCCCTGCCT.............................................................................	20	2	2.50	0.50	0.00	0.50	1.50
..........................................................................................................TATTGCACATCTCTCGGCCT.............................................................................	20	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCACCTCTCCCGGCCTAT...........................................................................	22	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCAAATCTCCCGGCCTA............................................................................	21	2	2.50	0.00	0.00	0.00	2.50
......................................................AGGACGGTATTT-GTGACAATATGA--..........................................................................................................................	24	1	5.00	0.00	0.00	0.00	5.00
......................................................AGGACGGTATTT-GTGACAATATA.............................................................................................................................	23	1	5.00	0.00	0.00	0.00	5.00
..........................................................................................................TATTGCACATCTCCCAGCCT.............................................................................	20	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TGTTGCACATCTCCCGGCCTAT...........................................................................	22	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCACATCTACCGGCCTAT...........................................................................	22	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCACATCTCCCCGCCTAC...........................................................................	22	2	2.50	0.00	0.00	0.00	2.50
..........................................................................................................TATTGCACATCTCCCGGCCTAAAAA........................................................................	25	2	2.50	0.50	0.50	0.00	1.50
...........................................................................................................ATTGCACATCTCCCGGCCTAC...........................................................................	21	2	2.50	1.50	0.00	0.00	1.00
..........................................................................................................TATTGCACATCTCCCGGCCTACAAA........................................................................	25	2	2.00	1.00	0.50	0.00	0.50
..........................................................................................................TATTGCGCATCTCCCGGCCTA............................................................................	21	2	2.00	0.00	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTCCCGGTCTAT...........................................................................	22	2	2.00	0.50	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGC...............................................................................	18	2	2.00	0.00	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTTCCGGCCT.............................................................................	20	2	2.00	0.00	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTCCCGGCCA.............................................................................	20	2	2.00	0.00	0.50	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGCCCA............................................................................	21	2	2.00	0.00	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTCTCGGCCTAT...........................................................................	22	2	2.00	0.00	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTCCCGGCTTAT...........................................................................	22	2	2.00	0.00	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTCCTGGCCTA............................................................................	21	2	2.00	0.00	0.00	0.00	2.00
......................................................AGGACGGTATTT-GTGACAATATGC--..........................................................................................................................	24	1	3.00	0.00	0.00	0.00	3.00
......................................................AGGACGGTATTT-GTGACAATA...............................................................................................................................	21	1	3.00	1.00	0.00	0.00	2.00
..........................................................................................................TATTGCACATCTCCCGGCCGA............................................................................	21	2	1.50	0.00	0.00	0.00	1.50
......................................................AGGACGGTATTT-GTGACAATATAA--A.........................................................................................................................	25	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATCTCCCGGCCTATTAA........................................................................	25	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACGTCTCCCGGCCTA............................................................................	21	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGTCCTA............................................................................	21	2	1.50	0.50	0.00	0.00	1.00
..........................................................................................................TATTGCACATCTCCCGGCCTACT..........................................................................	23	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCACGGCCTA............................................................................	21	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGCCTACG..........................................................................	23	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATCGCACATCTCCCGGCCT.............................................................................	20	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGCCTGT...........................................................................	22	2	1.50	0.50	0.00	0.00	1.00
..........................................................................................................TATTGCATATCTCCCGGCCTAT...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCAAATCTCCCGGCCTAT...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATATCCCGGCCTA............................................................................	21	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGCCTATCA.........................................................................	24	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGCCTACC..........................................................................	23	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCCGCCTC............................................................................	21	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACACCTCCCGGCCTATAA.........................................................................	24	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACACCTCCCGGCCT.............................................................................	20	2	1.50	0.00	0.00	0.00	1.50
......................................................AGGACGGCATTT-GTGACAATAT..............................................................................................................................	22	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATCTCCCAGCCTAC...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTACACATCTCCCGGCCTAT...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACCTCTCCCGGCCTAC...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
......................................................AGGACGGTATTT-GTGACAATATGA--AA........................................................................................................................	26	1	3.00	0.00	0.00	0.00	3.00
..........................................................................................................TATTGCACATCTCCCGGCCTTC...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGCCTCTAA.........................................................................	24	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGGCCTATAG.........................................................................	24	2	1.50	0.50	0.00	0.00	1.00
..........................................................................................................TACTGCACATCTCCCGGCCTAT...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGACCTAT...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50
..........................................................................................................TATTGCACATCTCCCGTCCTAC...........................................................................	22	2	1.50	0.00	0.00	0.00	1.50

droGri2

TTAAT----------------AAAAGTG----TTAAATT-TGCAGT------------TCGTGTTTAG------TGTTTTTT------------CCCGCTTAAGCATCTTGCAATTTATATGGCTTGCAGTTATCTGCATTA---ACCAT----------------------------------------------TT----T

Size

Hit Count

Total Norm

V109
Male body

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image								None
UNAFold Image								None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image																	None		None
UNAFold Image																	None		None