dme-mir-285- Best orthologs

dme-mir-285	chr3L:11939193-11939291 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11939206-11939228
   star strand at position 11939257-11939279
   mutations
   read mismatches

Notes: droPer1 ortholog lies in an unassembled regoin of the genome that occurs arround position super_9:225543-225960

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3L:11939178-11939306 -		1	ACT------------------TGCCCTGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAGAA--CCCA-----CTC----AA-TTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droSim1	chr3L:11307954-11308082 -	LASTZ	1	GCT------------------TGCCCAGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droSec1	super_0:4127812-4127940 -	LASTZ	1	ACT------------------TGCCCATCCACTTCAAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droYak2	chr3L:11984774-11984902 -	LASTZ	1	TCT------------------TGCCCTACCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGACAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droEre2	scaffold_4784:11929878-11930011 -	LASTZ	1	TCAGGAGC-------------TGCACTCCCACTTCGAGTCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAAGC--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGGAG------------TGTC-
droEug1	scf7180000409466:4030533-4030653 -	LASTZ	4	TC----------------------------ACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA--CATA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGCCT
droBia1	scf7180000302428:4183390-4183516 -	LASTZ	4	ACT----------------------CTTCCCCTTCGAATCGAAGAACTGAGATCGACTGGTGCATAGATAT----CAGGGAAA--GCCA-----CCC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAGCAATCAGCAGAG------------TGTCT
droTak1	scf7180000415741:178001-178124 +	LASTZ	4	GCT------------------CGC-------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA-ACCCA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTCT
droEle1	scf7180000491193:3850551-3850671 -	LASTZ	4	CT----------------------------TCTTCGAATCGAAGAACTGAGCTCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGTCT
droRho1	scf7180000780179:29930-30060 +	LASTZ	4	ATCCACC-----------------CAGCACACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGCCT
droFic1	scf7180000454113:2711074-2711205 +	LASTZ	4	ATCCACA-----------------CAGAAGCCTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATAC--CAAGGAAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTC-
droKik1	scf7180000302391:881259-881381 +	LASTZ	4	A-------------------------GGACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGACACCCG-----CTT----AT-TT-AACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCAATCAGCAGAG------------TGTC-
droAna3	scaffold_13337:6191341-6191461 -	LASTZ	1	GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAGA------------------
droBip1	scf7180000396419:132630-132750 -	LASTZ	4	GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACCAA------------------
dp4	chrXR_group6:1929779-1929903 -	LASTZ	1	TCT------------------TACAATTACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAGGA--CTCG-----CTA----ATTTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA------------------
droPer1	Unknown		1	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180949:5768880-5769006 +	LASTZ	1	ACA------------------------AATTGTTCGAATTAAAGAACTGAGATCGATTGGTGCATAGATAA----TATGCGAA--TTCTATCATTTGATTTCA-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAAG------------------
droVir3	scaffold_13049:21101427-21101556 +	LASTZ	1	ATG------------------CAC-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGC--CCAAAAA--GTAA-----TTC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGGCG------------CATC-
droMoj3	scaffold_6680:15475365-15475526 +	LASTZ	1	ACACACCCAGCAGACATCAAACACCACACCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATAACGCCCAAA-AAG--TCAT-----TTT----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGGTGTATGGGAACAAGTGTC-
droGri2	scaffold_15110:22570097-22570226 -	LASTZ	1	ATG------------------TAG-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGTCCAAGA--A--TAAT-----TTA----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGGCG------------CATT-

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	ACT------------------TGCCCTGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAGAA--CCCA-----CTC----AA-TTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droSim1	GCT------------------TGCCCAGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droSec1	ACT------------------TGCCCATCCACTTCAAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droYak2	TCT------------------TGCCCTACCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGACAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droEre2	TCAGGAGC-------------TGCACTCCCACTTCGAGTCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAAGC--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGGAG------------TGTC-
droEug1	TC----------------------------ACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA--CATA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGCCT
droBia1	ACT----------------------CTTCCCCTTCGAATCGAAGAACTGAGATCGACTGGTGCATAGATAT----CAGGGAAA--GCCA-----CCC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAGCAATCAGCAGAG------------TGTCT
droTak1	GCT------------------CGC-------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA-ACCCA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTCT
droEle1	CT----------------------------TCTTCGAATCGAAGAACTGAGCTCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGTCT
droRho1	ATCCACC-----------------CAGCACACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGCCT
droFic1	ATCCACA-----------------CAGAAGCCTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATAC--CAAGGAAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTC-
droKik1	A-------------------------GGACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGACACCCG-----CTT----AT-TT-AACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCAATCAGCAGAG------------TGTC-
droAna3	GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAGA------------------
droBip1	GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACCAA------------------
dp4	TCT------------------TACAATTACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAGGA--CTCG-----CTA----ATTTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA------------------
droPer1	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	ACA------------------------AATTGTTCGAATTAAAGAACTGAGATCGATTGGTGCATAGATAA----TATGCGAA--TTCTATCATTTGATTTCA-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAAG------------------
droVir3	ATG------------------CAC-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGC--CCAAAAA--GTAA-----TTC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGGCG------------CATC-
droMoj3	ACACACCCAGCAGACATCAAACACCACACCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATAACGCCCAAA-AAG--TCAT-----TTT----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGGTGTATGGGAACAAGTGTC-
droGri2	ATG------------------TAG-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGTCCAAGA--A--TAAT-----TTA----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGGCG------------CATT-

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image																None
UNAFold Image																None

Small RNA-seq read pileup

Species

Alignment

droSim1

GCT------------------TGCCCAGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	50406.00	2.00	50072.00	169.00	163.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	10235.00	0.00	10198.00	18.00	19.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	7046.00	0.00	7008.00	22.00	16.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	5581.00	0.00	5543.00	18.00	20.00
.............................................ACTGAGATCGATTGGTGCATAGG............................................................................................................	23	1	5087.00	0.00	5044.00	14.00	29.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	2079.00	0.00	2068.00	6.00	5.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	1941.00	4.00	1928.00	2.00	7.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	1875.00	0.00	1861.00	4.00	10.00
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	1155.00	3.00	1147.00	1.00	4.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	969.00	0.00	960.00	2.00	7.00
.............................................ACTGAGATCGATTGGTGCA................................................................................................................	19	1	871.00	0.00	866.00	3.00	2.00
.............................................ACTGAGATCGATTGGTGCATAGT............................................................................................................	23	1	817.00	0.00	813.00	3.00	1.00
.............................................ACTGAGATCGATTGGTGCATAGAA...........................................................................................................	24	1	746.00	0.00	745.00	0.00	1.00
.............................................ACTGAGATCGATTGGTGCAC...............................................................................................................	20	1	554.00	0.00	551.00	3.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGC............................................................................................................	23	1	498.00	0.00	497.00	1.00	0.00
..............................................CTGAGATCGATTGGTGCATAGA............................................................................................................	22	1	460.00	0.00	458.00	1.00	1.00
............................................AACTGAGATCGATTGGTGCAC...............................................................................................................	21	1	370.00	0.00	370.00	0.00	0.00
.............................................ACTGAGATCGATTGGGGCATAGA............................................................................................................	23	1	363.00	0.00	359.00	3.00	1.00
.............................................ACTGAGATCGATTGGTGCATAGAAA..........................................................................................................	25	1	355.00	0.00	352.00	0.00	3.00
.............................................ACTGAGATCGATTGGTGCATT..............................................................................................................	21	1	352.00	0.00	352.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATA..............................................................................................................	22	1	342.00	0.00	336.00	2.00	4.00
............................................AACTGAGATCGATTGGTGCATT..............................................................................................................	22	1	322.00	0.00	321.00	0.00	1.00
..............................................CTGAGATCGATTGGTGCATAG.............................................................................................................	21	1	292.00	0.00	286.00	5.00	1.00
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	210.00	2.00	207.00	0.00	1.00
............................................AACTGAGATCGATTGGTGCATAGG............................................................................................................	24	1	203.00	0.00	202.00	1.00	0.00
............................................AACTGAGATCGATTGGTGCA................................................................................................................	20	1	165.00	0.00	165.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAT...........................................................................................................	24	1	153.00	0.00	153.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAAAA----.....................................................................................................	26	1	146.00	0.00	143.00	3.00	0.00
.............................................ACTGAGATCGATTGGTGCATAA.............................................................................................................	22	1	142.00	0.00	142.00	0.00	0.00
.............................................ACTGAGATCGATTGGGGCAT...............................................................................................................	20	1	140.00	0.00	139.00	0.00	1.00
.............................................ACTGAGATCGATTGGTTCATAGA............................................................................................................	23	1	123.00	0.00	123.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATGG.............................................................................................................	22	1	116.00	0.00	115.00	0.00	1.00
.............................................ACTGAGATCGATTxGTGCATAGA............................................................................................................	22	1	111.00	0.00	111.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATTT.............................................................................................................	23	1	109.00	0.00	109.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCAG...............................................................................................................	20	1	95.00	0.00	95.00	0.00	0.00
.............................................ACTGAGATCGATTGGTCCATAGA............................................................................................................	23	1	89.00	0.00	89.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATAGT............................................................................................................	24	1	86.00	0.00	86.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAT.............................................................................................................	22	1	84.00	0.00	84.00	0.00	0.00
.............................................ACTGAGATCGATTTGTGCATAGA............................................................................................................	23	1	83.00	0.00	83.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	76.00	1.00	75.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	74.00	0.00	74.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGC.................................................................................................................	18	1	71.00	0.00	71.00	0.00	0.00
.............................................ACTGAGATCGATTGGAGCATAGA............................................................................................................	23	1	71.00	0.00	71.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCAG...............................................................................................................	21	1	69.00	0.00	69.00	0.00	0.00
............................................AACTGAGATCGATTGGGGCAT...............................................................................................................	21	1	68.00	0.00	68.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAAA............................................................................................................	23	1	66.00	0.00	66.00	0.00	0.00
.............................................ACTGAGATCGATTGGCGCATAGA............................................................................................................	23	1	66.00	0.00	66.00	0.00	0.00
.............................................GCTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	65.00	0.00	65.00	0.00	0.00
.............................................ACTGAGATCGATTGGGGCATAGG............................................................................................................	23	1	61.00	0.00	61.00	0.00	0.00
.............................................ACTGAGGTCGATTGGTGCATAGA............................................................................................................	23	1	61.00	0.00	59.00	1.00	1.00
.............................................ACTGAGATCGATTGTTGCATAGA............................................................................................................	23	1	58.00	0.00	58.00	0.00	0.00
..............................................CTGAGATCGATTGGTGCATAGG............................................................................................................	22	1	55.00	0.00	55.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATAT.............................................................................................................	23	1	55.00	0.00	55.00	0.00	0.00
.............................................ACTGAGATCGATTGGGGCATAG.............................................................................................................	22	1	53.00	0.00	52.00	1.00	0.00
...................................................................................................................CACCATTCGAAATCAGTGCT.........................................	20	1	50.00	0.00	49.00	1.00	0.00
.............................................ACTGAGATCGATTGGTGCATTT.............................................................................................................	22	1	49.00	0.00	49.00	0.00	0.00
............................................AACTGAGATCGATTGGTGC.................................................................................................................	19	1	47.00	0.00	44.00	3.00	0.00
.............................................ACTGGGATCGATTGGTGCATAGA............................................................................................................	23	1	43.00	0.00	43.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	41.00	0.00	41.00	0.00	0.00
.............................................ACTGAGATCGATTCGTGCATAGA............................................................................................................	23	1	41.00	0.00	41.00	0.00	0.00
..............................................CTGAGATCGATTGGTGCATAGT............................................................................................................	22	1	41.00	0.00	41.00	0.00	0.00
.............................................ACTGAGATCGATTGGTxCATAGA............................................................................................................	22	1	39.00	0.00	39.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCAA...............................................................................................................	20	1	39.00	0.00	38.00	0.00	1.00
............................................AACTGAGATCGATTGGTGCATAGAA...........................................................................................................	25	1	37.00	0.00	37.00	0.00	0.00
..............................................CTGAGATCGATTGGTGCAT...............................................................................................................	19	1	37.00	0.00	37.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATAA.............................................................................................................	23	1	36.00	0.00	35.00	1.00	0.00
.............................................ACTGAGATCGATTGGTGCG................................................................................................................	19	1	35.00	0.00	34.00	0.00	1.00
.............................................ACTGAGATCGATTGTTGCATAG.............................................................................................................	22	1	34.00	0.00	33.00	0.00	1.00
............................................AACTGAGATCGATTGGTGCAA...............................................................................................................	21	1	32.00	0.00	32.00	0.00	0.00
.............................................ACTGAGATCGATTGGTACATAGA............................................................................................................	23	1	31.00	0.00	31.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	29.00	0.00	29.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGG..........................................	22	1	29.00	0.00	29.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGT.................................................................................................................	18	1	28.00	0.00	28.00	0.00	0.00
..............................................CTGAGATCGATTGGTGCA................................................................................................................	18	1	28.00	0.00	28.00	0.00	0.00
.............................................ACTGAGATCGATTxGTGCATAG.............................................................................................................	21	1	28.00	0.00	26.00	0.00	2.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	27.00	0.00	27.00	0.00	0.00
.............................................ACTGAGATCGATTGGGGCATA..............................................................................................................	21	1	27.00	0.00	27.00	0.00	0.00
.............................................ACTGAGATCGATTTGTGCAT...............................................................................................................	20	1	26.00	0.00	26.00	0.00	0.00
.............................................ACTGAGATCGATTGGAGCAT...............................................................................................................	20	1	25.00	0.00	24.00	0.00	1.00
............................................AACTGAGATCGATTGGTGCATAGC............................................................................................................	24	1	25.00	0.00	25.00	0.00	0.00
.............................................ACTGAGATCGATTGGTTCATAG.............................................................................................................	22	1	23.00	0.00	23.00	0.00	0.00
.............................................ACTGAGATCGATTTGTGCATAG.............................................................................................................	22	1	23.00	0.00	23.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCACAGA............................................................................................................	23	1	22.00	0.00	22.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAC.............................................................................................................	22	1	22.00	0.00	22.00	0.00	0.00
...................................................................................................................CACCATTCGAAATCAGTG...........................................	18	1	21.00	0.00	21.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATAGAT...........................................................................................................	25	1	20.00	0.00	19.00	0.00	1.00
.............................................ATTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	20.00	0.00	20.00	0.00	0.00
.............................................ACTGAGGTCGATTGGTGCAT...............................................................................................................	20	1	19.00	0.00	19.00	0.00	0.00
....................................................................TAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTC................................................................	28	1	19.00	0.00	18.00	0.00	1.00
.............................................ACTGAGATCGATTxGTGCAT...............................................................................................................	19	1	19.00	0.00	19.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATGG.............................................................................................................	23	1	19.00	0.00	19.00	0.00	0.00
.............................................ACTGAGATTGATTGGTGCATAGA............................................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGTATAGA............................................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCGTAGA............................................................................................................	23	1	18.00	0.00	17.00	0.00	1.00
.............................................ACTGAGATCGATTGGTGCATAGATA..........................................................................................................	25	1	18.00	0.00	18.00	0.00	0.00
.............................................ACTGAGATCGGTTGGTGCATAGA............................................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
.............................................ACCGAGATCGATTGGTGCATAGA............................................................................................................	23	1	17.00	0.00	17.00	0.00	0.00
...............................................TGAGATCGATTGGTGCAT...............................................................................................................	18	1	17.00	0.00	17.00	0.00	0.00
.............................................ACTGAGATCGATTGGCGCAT...............................................................................................................	20	1	17.00	0.00	17.00	0.00	0.00
...............................................TGAGATCGATTGGTGCATAGA............................................................................................................	21	1	17.00	0.00	17.00	0.00	0.00
..............................................CTGAGATCGATTGGTGCATAGAT...........................................................................................................	23	1	17.00	0.00	17.00	0.00	0.00

droSec1

ACT------------------TGCCCATCCACTTCAAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	36332.00	26.00	48.00	36258.00
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	30903.00	66.00	37.00	30800.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	14187.00	33.00	29.00	14125.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	7044.00	45.00	8.00	6991.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	3496.00	25.00	2.00	3469.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	2365.00	2.00	3.00	2360.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	2153.00	0.00	1.00	2152.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	1571.00	52.00	8.00	1511.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	904.00	4.00	2.00	898.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	436.00	0.00	0.00	436.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	357.00	5.00	0.00	352.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	253.00	5.00	0.00	248.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	191.00	5.00	0.00	186.00
................................................................................................................TAGCACCATTCGAAATCA..............................................	18	1	148.00	0.00	0.00	148.00
................................................................................................................TAGCACCATTCGAAATCAGTT...........................................	21	1	135.00	2.00	0.00	133.00
...................................................................................................................CACCATTCGAAATCAGTG...........................................	18	1	131.00	0.00	0.00	131.00
................................................................................................................TAGCACCATTCGAAATCAGA............................................	20	1	115.00	0.00	0.00	115.00
................................................................................................................TAGCACCATTCGAAATCAGTA...........................................	21	1	115.00	0.00	0.00	115.00
................................................................................................................TAGCACCATTCGAAATCAGTGAA.........................................	23	1	109.00	0.00	0.00	109.00
................................................................................................................TAGCACCATTCGAAATCAGTGTA.........................................	23	1	109.00	0.00	0.00	109.00
................................................................................................................TAGCACCATTCGAAATCAGTGCTT........................................	24	1	85.00	0.00	0.00	85.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	85.00	1.00	0.00	84.00
................................................................................................................TATCACCATTCGAAATCAGTG...........................................	21	1	83.00	1.00	0.00	82.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	79.00	0.00	0.00	79.00
................................................................................................................TAGCACCATTCGAAATCAGCG...........................................	21	1	77.00	0.00	0.00	77.00
................................................................................................................TAGCACAATTCGAAATCAGTG...........................................	21	1	73.00	0.00	0.00	73.00
................................................................................................................TAGCACAATTCGAAATCAGTGCT.........................................	23	1	71.00	0.00	0.00	71.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	70.00	0.00	1.00	69.00
................................................................................................................TAGCACCATTCGAAATCAGCGCT.........................................	23	1	70.00	0.00	0.00	70.00
...............................................................................................................CTAGCACCATTCGAAATCAGTG...........................................	22	1	68.00	0.00	0.00	68.00
................................................................................................................TAGCAACATTCGAAATCAGTG...........................................	21	1	61.00	0.00	0.00	61.00
................................................................................................................TAGCACCATTCGAAATCAATG...........................................	21	1	61.00	0.00	0.00	61.00
................................................................................................................TATCACCATTCGAAATCAGTGC..........................................	22	1	59.00	1.00	0.00	58.00
................................................................................................................TATCACCATTCGAAATCAGTGCT.........................................	23	1	55.00	0.00	0.00	55.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	51.00	0.00	0.00	51.00
................................................................................................................TAGAACCATTCGAAATCAGTGCT.........................................	23	1	50.00	0.00	0.00	50.00
................................................................................................................TAGCACCATTCGAAATCAGTGG..........................................	22	1	49.00	0.00	0.00	49.00
................................................................................................................TAGCACCATTCGAAATCAGAGCT.........................................	23	1	47.00	0.00	0.00	47.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	45.00	0.00	0.00	45.00
................................................................................................................TACCACCATTCGAAATCAGTG...........................................	21	1	45.00	0.00	0.00	45.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGCT.........................................	24	1	44.00	0.00	0.00	44.00
................................................................................................................TAGAACCATTCGAAATCAGTG...........................................	21	1	43.00	0.00	0.00	43.00
................................................................................................................TAGCACCATTCGAAATCAGAG...........................................	21	1	42.00	0.00	0.00	42.00
................................................................................................................TAGCACCATTCGAAATCATTG...........................................	21	1	41.00	0.00	0.00	41.00
................................................................................................................TAGCACCATACGAAATCAGTG...........................................	21	1	41.00	0.00	0.00	41.00
................................................................................................................TAGCACCATTCGAAATCAGCGC..........................................	22	1	40.00	0.00	0.00	40.00
.............................................ACTGAGATCGATTGGTGCA................................................................................................................	19	1	40.00	0.00	0.00	40.00
................................................................................................................TAGCACCATTCGAAGTCAGTG...........................................	21	1	39.00	0.00	0.00	39.00
................................................................................................................TACCACCATTCGAAATCAGTGC..........................................	22	1	37.00	0.00	0.00	37.00
................................................................................................................TAGCACCATTCGAAATCAGTGAT.........................................	23	1	36.00	0.00	0.00	36.00
................................................................................................................TAGCACCATTCGAAATCAATGCT.........................................	23	1	36.00	2.00	0.00	34.00
................................................................................................................TAGCACCATTCGAAATCACTG...........................................	21	1	36.00	1.00	0.00	35.00
.................................................................................................................AGCACCATTCGAAATCAGTG...........................................	20	1	36.00	0.00	0.00	36.00
.............................................ACTGAGATCGATTGGTGCATAGAA...........................................................................................................	24	1	36.00	1.00	0.00	35.00
................................................................................................................TAGCACCATTCAAAATCAGTGCT.........................................	23	1	35.00	0.00	0.00	35.00
................................................................................................................TAGCACCATTCAAAATCAGTG...........................................	21	1	35.00	0.00	0.00	35.00
................................................................................................................TAGCACCATTCGAAATCAGGGCT.........................................	23	1	34.00	0.00	0.00	34.00
................................................................................................................TAGCACAATTCGAAATCAGTGC..........................................	22	1	34.00	0.00	0.00	34.00
................................................................................................................TAGCACCATTCGAAGTCAGTGCT.........................................	23	1	33.00	0.00	0.00	33.00
................................................................................................................TAGCACCATTCGAAATCATTGCT.........................................	23	1	33.00	1.00	0.00	32.00
................................................................................................................CAGCACCATTCGAAATCAGTG...........................................	21	1	33.00	0.00	0.00	33.00
................................................................................................................TAGCACCATTCGAAATCAA.............................................	19	1	33.00	0.00	0.00	33.00
................................................................................................................TAGCACCATTCGAAATCAGTC...........................................	21	1	33.00	0.00	0.00	33.00
................................................................................................................TGGCACCATTCGAAATCAGTG...........................................	21	1	32.00	0.00	0.00	32.00
................................................................................................................TAGCACCACTCGAAATCAGTG...........................................	21	1	32.00	0.00	0.00	32.00
................................................................................................................TAGCACCATACGAAATCAGTGCT.........................................	23	1	31.00	0.00	0.00	31.00
................................................................................................................AAGCACCATTCGAAATCAGTG...........................................	21	1	30.00	0.00	0.00	30.00
................................................................................................................TAGCACCATTCGGAATCAGTG...........................................	21	1	30.00	0.00	0.00	30.00
................................................................................................................TAGCACCATTCGAAATCAGTTCT.........................................	23	1	30.00	1.00	0.00	29.00
................................................................................................................TAGCACTATTCGAAATCAGTG...........................................	21	1	29.00	0.00	1.00	28.00
................................................................................................................TAGCACCATTCGAAATCATTGC..........................................	22	1	29.00	0.00	1.00	28.00
.................................................................................................................AGCACCATTCGAAATCAGTGCT.........................................	22	1	29.00	0.00	0.00	29.00
................................................................................................................TACCACCATTCGAAATCAGTGCT.........................................	23	1	28.00	1.00	0.00	27.00
................................................................................................................TAGCACCATCCGAAATCAGTG...........................................	21	1	28.00	0.00	0.00	28.00
................................................................................................................TAGCACCATTCGAAATCACTGCT.........................................	23	1	28.00	1.00	0.00	27.00
................................................................................................................TAGCACCACTCGAAATCAGTGCT.........................................	23	1	28.00	0.00	1.00	27.00
................................................................................................................TAGCACCATCCGAAATCAGTGCT.........................................	23	1	28.00	1.00	0.00	27.00
................................................................................................................TAGCACCATTTGAAATCAGTG...........................................	21	1	28.00	0.00	0.00	28.00
................................................................................................................TAGCACCATTCGAGATCAGTGCT.........................................	23	1	28.00	0.00	0.00	28.00
................................................................................................................TAGCGCCATTCGAAATCAGTGCT.........................................	23	1	27.00	0.00	0.00	27.00
................................................................................................................TAGCGCCATTCGAAATCAGTG...........................................	21	1	27.00	0.00	0.00	27.00
................................................................................................................TAGCACCATTCGAAATTAGTGCT.........................................	23	1	27.00	0.00	0.00	27.00
................................................................................................................TAGCACCATTCGAAATCAGTTT..........................................	22	1	26.00	1.00	0.00	25.00
................................................................................................................TAGCACCATTCGAAATCAATGC..........................................	22	1	26.00	0.00	0.00	26.00
................................................................................................................TAGCACCATTCGAACTCAGTG...........................................	21	1	26.00	0.00	0.00	26.00
................................................................................................................GAGCACCATTCGAAATCAGTG...........................................	21	1	26.00	0.00	0.00	26.00
................................................................................................................TAGCACCATTCTAAATCAGTG...........................................	21	1	24.00	0.00	0.00	24.00
................................................................................................................TAGCACCATTCGAAATCGGTGCT.........................................	23	1	24.00	0.00	0.00	24.00
................................................................................................................TAGCACCGTTCGAAATCAGTG...........................................	21	1	24.00	0.00	0.00	24.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	24.00	0.00	0.00	24.00
................................................................................................................TAGCACCATTCGCAATCAGTG...........................................	21	1	24.00	0.00	0.00	24.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGC..........................................	23	1	24.00	0.00	0.00	24.00
................................................................................................................TAGCACCATTCGAAATCGGTG...........................................	21	1	23.00	0.00	0.00	23.00
................................................................................................................CAGCACCATTCGAAATCAGTGCT.........................................	23	1	23.00	0.00	0.00	23.00
................................................................................................................TAGCACCGTTCGAAATCAGTGCT.........................................	23	1	23.00	0.00	0.00	23.00
................................................................................................................TAGCCCCATTCGAAATCAGTG...........................................	21	1	22.00	0.00	0.00	22.00
................................................................................................................TAGCACCATTCGAGATCAGTG...........................................	21	1	22.00	0.00	0.00	22.00
................................................................................................................TAGCACCACTCGAAATCAGTGC..........................................	22	1	22.00	0.00	0.00	22.00
...............................................TGAGATCGATTGGTGCATAGA............................................................................................................	21	1	22.00	1.00	0.00	21.00
................................................................................................................TGGCACCATTCGAAATCAGTGCT.........................................	23	1	22.00	0.00	0.00	22.00
................................................................................................................TAGCATCATTCGAAATCAGTG...........................................	21	1	22.00	0.00	0.00	22.00

droYak2

TCT------------------TGCCCTACCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGACAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	53114.00	0.00	15009.00	74.00	37994.00	37.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	20070.00	1.00	7002.00	40.00	11870.00	1157.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	15953.00	1.00	204.00	36.00	464.00	15248.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	6187.00	0.00	1745.00	58.00	4376.00	8.00
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	3358.00	0.00	1027.00	9.00	2137.00	185.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	3134.00	0.00	45.00	15.00	85.00	2989.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	2962.00	0.00	67.00	15.00	136.00	2744.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	2824.00	1.00	783.00	42.00	1986.00	12.00
.............................................ACTGAGATCGATTGGTGCATAGG............................................................................................................	23	1	1757.00	0.00	0.00	0.00	1.00	1756.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	1407.00	0.00	354.00	15.00	1038.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGCT.........................................	23	1	819.00	0.00	63.00	0.00	756.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGCT.........................................	23	1	755.00	0.00	118.00	0.00	637.00	0.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	659.00	0.00	9.00	2.00	26.00	622.00
.............................................ACTGAGATCGATTGGTGCATAGT............................................................................................................	23	1	503.00	0.00	5.00	1.00	12.00	485.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	500.00	0.00	161.00	0.00	339.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGCT.........................................	23	1	493.00	0.00	111.00	0.00	382.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	445.00	0.00	121.00	2.00	319.00	3.00
................................................................................................................TAGCACCATTCGAAATCAGCGCT.........................................	23	1	414.00	0.00	67.00	0.00	347.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAA...........................................................................................................	24	1	294.00	0.00	1.00	2.00	7.00	284.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	290.00	0.00	1.00	1.00	4.00	284.00
.............................................ACTGAGATCGATTGGTGCA................................................................................................................	19	1	264.00	0.00	4.00	0.00	6.00	254.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	261.00	0.00	75.00	0.00	179.00	7.00
................................................................................................................TAGCACCATTCGAACTCAGTGC..........................................	22	1	250.00	0.00	30.00	0.00	220.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGC..........................................	22	1	214.00	0.00	53.00	0.00	161.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGC..........................................	22	1	211.00	0.00	40.00	1.00	168.00	2.00
.............................................ACTGAGATCGATTGGTGCAC...............................................................................................................	20	1	182.00	0.00	0.00	0.00	1.00	181.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	175.00	0.00	52.00	0.00	114.00	9.00
................................................................................................................TAGCACCGTTCGAAATCAGTGCT.........................................	23	1	172.00	0.00	36.00	0.00	136.00	0.00
.............................................ACTGAGATCGATTGGGGCATAGA............................................................................................................	23	1	170.00	0.00	0.00	0.00	2.00	168.00
................................................................................................................TAGCACCATGCGAAATCAGTGCT.........................................	23	1	162.00	0.00	23.00	0.00	139.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTTCT.........................................	23	1	152.00	0.00	39.00	0.00	113.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGC..........................................	22	1	141.00	0.00	37.00	0.00	103.00	1.00
................................................................................................................TAGCACCATTCGAAATCCGTGCT.........................................	23	1	136.00	0.00	22.00	0.00	114.00	0.00
................................................................................................................TAGCACCATTCGGAATCAGTGCT.........................................	23	1	129.00	0.00	34.00	0.00	95.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGCT.........................................	23	1	124.00	0.00	17.00	0.00	107.00	0.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	124.00	1.00	4.00	0.00	5.00	114.00
.............................................ACTGAGATCGATTGGTGCATT..............................................................................................................	21	1	120.00	0.00	0.00	0.00	1.00	119.00
................................................................................................................TAGCACCCTTCGAAATCAGTGCT.........................................	23	1	112.00	0.00	26.00	1.00	85.00	0.00
................................................................................................................TAGCACCATTCGAAGTCAGTGCT.........................................	23	1	111.00	0.00	16.00	0.00	95.00	0.00
................................................................................................................TAGCACCATTCGACATCAGTGCT.........................................	23	1	110.00	0.00	17.00	0.00	93.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTGCT.........................................	23	1	106.00	0.00	23.00	0.00	83.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTTC..........................................	22	1	106.00	0.00	51.00	0.00	55.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTGCT.........................................	23	1	106.00	0.00	8.00	0.00	98.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCTT........................................	24	1	105.00	0.00	22.00	1.00	82.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGT..........................................	22	1	101.00	0.00	9.00	0.00	92.00	0.00
................................................................................................................TAGCGCCATTCGAAATCAGTGCT.........................................	23	1	97.00	0.00	20.00	0.00	77.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTGCT.........................................	23	1	95.00	0.00	19.00	0.00	76.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGT..........................................	22	1	94.00	0.00	17.00	0.00	77.00	0.00
................................................................................................................TAGCACCAGTCGAAATCAGTGCT.........................................	23	1	91.00	0.00	7.00	0.00	84.00	0.00
................................................................................................................TGGCACCATTCGAAATCAGTGCT.........................................	23	1	90.00	0.00	26.00	0.00	64.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGT..........................................	22	1	89.00	0.00	19.00	0.00	70.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTGCT.........................................	23	1	86.00	0.00	19.00	0.00	67.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGCT.........................................	23	1	84.00	0.00	26.00	0.00	58.00	0.00
..............................................CTGAGATCGATTGGTGCATAGA............................................................................................................	22	1	84.00	0.00	2.00	0.00	5.00	77.00
................................................................................................................TAGCACCATGCGTAATCAGTGCT.........................................	23	1	79.00	0.00	15.00	0.00	64.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTGCT.........................................	23	1	78.00	0.00	7.00	0.00	71.00	0.00
................................................................................................................TAGCACCATCCGAAATCAGTGCT.........................................	23	1	78.00	0.00	19.00	0.00	59.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGC..........................................	22	1	78.00	0.00	15.00	0.00	62.00	1.00
.............................................ACTGAGATCGATTGGTGCATAGAT...........................................................................................................	24	1	77.00	0.00	0.00	0.00	2.00	75.00
................................................................................................................TAGCACCACTCGAAATCAGTGCT.........................................	23	1	74.00	0.00	19.00	0.00	55.00	0.00
................................................................................................................TAACACCATTCGAAATCAGTGCT.........................................	23	1	73.00	0.00	18.00	0.00	55.00	0.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGCT.........................................	24	1	69.00	0.00	23.00	0.00	46.00	0.00
................................................................................................................TAGCACCATTCGAAATCGGTGCT.........................................	23	1	69.00	0.00	15.00	0.00	54.00	0.00
................................................................................................................TAGCACCATTCCAAATCAGTGCT.........................................	23	1	69.00	0.00	21.00	0.00	48.00	0.00
................................................................................................................TAGCACCGTTCGAAATCAGTGC..........................................	22	1	68.00	0.00	14.00	0.00	54.00	0.00
................................................................................................................TAGCACCATTCGCACTCAGTGCT.........................................	23	1	68.00	0.00	8.00	0.00	60.00	0.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	68.00	0.00	14.00	0.00	54.00	0.00
................................................................................................................AAGCACCATTCGAAATCAGTGCT.........................................	23	1	68.00	0.00	16.00	0.00	52.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	68.00	0.00	12.00	0.00	56.00	0.00
.............................................ACTGAGATCGATTGGTGCATGG.............................................................................................................	22	1	67.00	0.00	0.00	0.00	0.00	67.00
................................................................................................................TAGCACCATTCGTAATCAGTTCT.........................................	23	1	67.00	0.00	24.00	0.00	43.00	0.00
................................................................................................................TAGCACCATTCGAAAGCAGTGCT.........................................	23	1	65.00	0.00	11.00	0.00	54.00	0.00
................................................................................................................TAGCACCATTCGAAACCAGTGCT.........................................	23	1	64.00	0.00	14.00	0.00	50.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCG.........................................	23	1	63.00	0.00	21.00	0.00	41.00	1.00
................................................................................................................TAGCACCGTTCGTAATCAGTGCT.........................................	23	1	62.00	0.00	17.00	0.00	45.00	0.00
.............................................ACTGAGATCGATTGGGGCAT...............................................................................................................	20	1	59.00	0.00	0.00	1.00	0.00	58.00
................................................................................................................TAGCACCATTCGAAATCAGTCCT.........................................	23	1	58.00	0.00	4.00	1.00	53.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGCT.........................................	23	1	57.00	0.00	13.00	1.00	40.00	3.00
................................................................................................................TAGCACCATTCAAAATCAGTGCT.........................................	23	1	56.00	0.00	25.00	0.00	31.00	0.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	56.00	0.00	1.00	0.00	7.00	48.00
................................................................................................................TAGCACTATTCGAAATCAGTGCT.........................................	23	1	55.00	0.00	14.00	0.00	41.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTG...........................................	21	1	55.00	0.00	8.00	0.00	47.00	0.00
................................................................................................................TAGCACCATTCTAAATCAGTGCT.........................................	23	1	54.00	0.00	9.00	0.00	45.00	0.00
................................................................................................................TAGCAGCATTCGAAATCAGTGCT.........................................	23	1	54.00	0.00	6.00	0.00	48.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGAT.........................................	23	1	53.00	0.00	16.00	0.00	37.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTGC..........................................	22	1	52.00	0.00	6.00	0.00	46.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGC............................................................................................................	23	1	49.00	0.00	0.00	0.00	10.00	39.00
.................................................................................................................AGCACCATTCGAAATCAGTGCT.........................................	22	1	49.00	0.00	12.00	0.00	37.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTA.........................................	23	1	49.00	0.00	13.00	0.00	36.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTGC..........................................	22	1	48.00	0.00	8.00	0.00	40.00	0.00
................................................................................................................TCGCACCATTCGAAATCAGTGCT.........................................	23	1	48.00	0.00	7.00	0.00	41.00	0.00
.............................................ACTGAGATCGATTGGGGCATAG.............................................................................................................	22	1	47.00	0.00	0.00	0.00	0.00	47.00
................................................................................................................TAGCACCATTCGAACTCAGT............................................	20	1	46.00	0.00	3.00	0.00	43.00	0.00
................................................................................................................TAGCACCATTCGAGATCAGTGCT.........................................	23	1	45.00	0.00	16.00	0.00	29.00	0.00
.............................................ACTGAGATCGATTGGTGCAG...............................................................................................................	20	1	44.00	0.00	0.00	0.00	1.00	43.00
................................................................................................................TAGCACCATTCGAATTCAGTGCT.........................................	23	1	44.00	0.00	0.00	0.00	44.00	0.00
.................................................................................................................AGCACCATTCGAAATCAGTGC..........................................	21	1	44.00	0.00	9.00	0.00	28.00	7.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGC..........................................	23	1	43.00	0.00	6.00	0.00	35.00	2.00
................................................................................................................TAGCACCATTCGAAATCAGAGC..........................................	22	1	42.00	0.00	10.00	0.00	29.00	3.00
................................................................................................................TAGCACCATTCGCAATCAGTG...........................................	21	1	42.00	0.00	12.00	0.00	30.00	0.00
.............................................ACTGAGATCGATTGGTGCATTT.............................................................................................................	22	1	41.00	0.00	0.00	0.00	3.00	38.00

droEre2

TCAGGAGC-------------TGCACTCCCACTTCGAGTCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAAGC--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGGAG------------TGTC-	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	128004.00	0.00	3904.00	0.00	124100.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	95240.00	2.00	12646.00	0.00	82592.00
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	60896.00	7.00	10931.00	0.00	49958.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	10823.00	0.00	2702.00	0.00	8121.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	9077.00	1.00	1083.00	0.00	7993.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	4593.00	0.00	339.00	0.00	4254.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	2943.00	0.00	475.00	0.00	2468.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	2310.00	0.00	358.00	0.00	1952.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	2269.00	0.00	323.00	0.00	1946.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	1793.00	0.00	255.00	0.00	1538.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	1608.00	0.00	186.00	0.00	1422.00
................................................................................................................TAGCACAATTCGAAATCAGTG...........................................	21	1	1213.00	0.00	3.00	0.00	1210.00
................................................................................................................TATCACCATTCGAAATCAGTG...........................................	21	1	991.00	0.00	1.00	0.00	990.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	854.00	0.00	54.00	0.00	800.00
................................................................................................................TAGCACCATTCTAAATCAGTG...........................................	21	1	747.00	0.00	4.00	0.00	743.00
................................................................................................................TAGCACAATTCGAAATCAGTGC..........................................	22	1	720.00	0.00	20.00	0.00	700.00
................................................................................................................TATCACCATTCGAAATCAGTGC..........................................	22	1	680.00	0.00	9.00	0.00	671.00
................................................................................................................TAGCACCATTAGAAATCAGTG...........................................	21	1	639.00	0.00	3.00	0.00	636.00
................................................................................................................TAGCACCATTCGAAATAAGTG...........................................	21	1	608.00	0.00	3.00	0.00	605.00
...................................................................................................................CACCATTCGAAATCAGTG...........................................	18	1	550.00	0.00	5.00	0.00	545.00
................................................................................................................TAGCACCATTCTAAATCAGTGC..........................................	22	1	517.00	0.00	15.00	0.00	502.00
................................................................................................................TAGAACCATTCGAAATCAGTG...........................................	21	1	497.00	0.00	1.00	0.00	496.00
................................................................................................................TAGCACCATTCGAAATCAGTTC..........................................	22	1	497.00	0.00	59.00	0.00	438.00
................................................................................................................TAGCACCATTCGAAATCAGTT...........................................	21	1	495.00	0.00	16.00	0.00	479.00
................................................................................................................TAGCACAATTCGAAATCAGTGCT.........................................	23	1	483.00	0.00	17.00	0.00	466.00
................................................................................................................TAGCACCATTCGAAATCATTG...........................................	21	1	462.00	0.00	20.00	0.00	442.00
................................................................................................................TAGCACCATTAGAAATCAGTGC..........................................	22	1	417.00	0.00	11.00	0.00	406.00
................................................................................................................TAGCACCATTCGAAATAAGTGC..........................................	22	1	409.00	0.00	16.00	0.00	393.00
................................................................................................................TATCACCATTCGAAATCAGTGCT.........................................	23	1	390.00	0.00	5.00	0.00	385.00
................................................................................................................TAGAACCATTCGAAATCAGTGC..........................................	22	1	364.00	0.00	8.00	0.00	356.00
................................................................................................................TAGCAACATTCGAAATCAGTG...........................................	21	1	359.00	0.00	2.00	0.00	357.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	344.00	0.00	8.00	0.00	336.00
................................................................................................................TAGCACCATTCTAAATCAGTGCT.........................................	23	1	306.00	0.00	13.00	0.00	293.00
................................................................................................................TAGCACCATTCGAAATCATTGC..........................................	22	1	306.00	0.00	26.00	0.00	280.00
................................................................................................................TAGCACCATTCGAAATCAGTGCG.........................................	23	1	291.00	0.00	4.00	0.00	287.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	278.00	0.00	19.00	0.00	259.00
................................................................................................................TAGCACCATTAGAAATCAGTGCT.........................................	23	1	268.00	0.00	10.00	0.00	258.00
................................................................................................................TAGCAACATTCGAAATCAGTGC..........................................	22	1	247.00	0.00	9.00	0.00	238.00
...............................................................................................................CTAGCACCATTCGAAATCAGTG...........................................	22	1	240.00	0.00	6.00	0.00	234.00
................................................................................................................TACCACCATTCGAAATCAGTG...........................................	21	1	238.00	0.00	1.00	0.00	237.00
................................................................................................................TAGCACCATTCGAAATCAGCGC..........................................	22	1	234.00	0.00	72.00	0.00	162.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGC..........................................	23	1	234.00	0.00	37.00	0.00	197.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	228.00	0.00	5.00	0.00	223.00
................................................................................................................TAGAACCATTCGAAATCAGTGCT.........................................	23	1	226.00	0.00	9.00	0.00	217.00
................................................................................................................TAGCACCATTCGAAATCAGTGAT.........................................	23	1	225.00	0.00	14.00	0.00	211.00
................................................................................................................TAGCACCATTCGAAATCAGTTCT.........................................	23	1	219.00	0.00	26.00	0.00	193.00
................................................................................................................TAGCACCATTCAAAATCAGTG...........................................	21	1	215.00	0.00	1.00	0.00	214.00
................................................................................................................TAGCACCATTCGAAATCAGTGTA.........................................	23	1	206.00	0.00	30.00	0.00	176.00
................................................................................................................TAACACCATTCGAAATCAGTG...........................................	21	1	199.00	0.00	1.00	0.00	198.00
................................................................................................................TAGCACCATTCGAAATCAGTA...........................................	21	1	195.00	0.00	14.00	0.00	181.00
................................................................................................................TACCACCATTCGAAATCAGTGC..........................................	22	1	188.00	0.00	6.00	0.00	182.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	187.00	0.00	3.00	0.00	184.00
................................................................................................................TAGCACCATTCGAAATCAGCG...........................................	21	1	182.00	0.00	13.00	0.00	169.00
................................................................................................................TAGCACCATTCGAAATCAGGGC..........................................	22	1	181.00	0.00	31.00	0.00	150.00
................................................................................................................TAGCACCATTCGAAATCATTGCT.........................................	23	1	170.00	0.00	23.00	0.00	147.00
................................................................................................................TAGCACCATTCGAAATCAGCGCT.........................................	23	1	155.00	0.00	42.00	0.00	113.00
................................................................................................................TAGCACCATTCGAAGTCAGTG...........................................	21	1	148.00	0.00	6.00	0.00	142.00
.................................................................................................................AGCACCATTCGAAATCAGTG...........................................	20	1	143.00	0.00	5.00	0.00	138.00
................................................................................................................TAACACCATTCGAAATCAGTGC..........................................	22	1	142.00	0.00	10.00	0.00	132.00
................................................................................................................TAGCACCATTTGAAATCAGTG...........................................	21	1	142.00	0.00	1.00	0.00	141.00
................................................................................................................TAGCACCATTCGAACTCAGTGC..........................................	22	1	142.00	0.00	101.00	0.00	41.00
................................................................................................................TAGCACCATTCGAAACCAGTG...........................................	21	1	141.00	0.00	5.00	0.00	136.00
................................................................................................................TAGCACCATTCGAAATCAGTTT..........................................	22	1	140.00	0.00	21.00	0.00	119.00
................................................................................................................TAGCACCATTCGAGATCAGTG...........................................	21	1	138.00	0.00	6.00	0.00	132.00
................................................................................................................TAGCACCATTCAAAATCAGTGC..........................................	22	1	137.00	0.00	12.00	0.00	125.00
................................................................................................................TAGCACCATTCGCAATCAGTGC..........................................	22	1	132.00	0.00	85.00	0.00	47.00
................................................................................................................TAGCGCCATTCGAAATCAGTG...........................................	21	1	130.00	0.00	5.00	0.00	125.00
................................................................................................................TGGCACCATTCGAAATCAGTG...........................................	21	1	125.00	0.00	5.00	0.00	120.00
................................................................................................................TAGCACTATTCGAAATCAGTG...........................................	21	1	125.00	0.00	11.00	0.00	114.00
................................................................................................................TAGCACCACTCGAAATCAGTG...........................................	21	1	124.00	0.00	3.00	0.00	121.00
................................................................................................................CAGCACCATTCGAAATCAGTG...........................................	21	1	123.00	0.00	5.00	0.00	118.00
................................................................................................................TAGCACCATTTGAAATCAGTGC..........................................	22	1	117.00	0.00	6.00	0.00	111.00
.................................................................................................................AGCACCATTCGAAATCAGTGC..........................................	21	1	114.00	0.00	13.00	0.00	101.00
................................................................................................................TAGCACCATTCGAAATCAGTC...........................................	21	1	114.00	0.00	3.00	0.00	111.00
................................................................................................................TAGCACCATTCGAAATCAGTCC..........................................	22	1	113.00	0.00	9.00	0.00	104.00
................................................................................................................TAGCACCATTCGCAATCAGTGCT.........................................	23	1	112.00	0.00	78.00	0.00	34.00
................................................................................................................TAGCACCATTCGAACTCAGTG...........................................	21	1	111.00	0.00	30.00	0.00	81.00
................................................................................................................TACCACCATTCGAAATCAGTGCT.........................................	23	1	110.00	0.00	6.00	0.00	104.00
................................................................................................................TAGCATCATTCGAAATCAGTG...........................................	21	1	110.00	0.00	3.00	0.00	107.00
................................................................................................................TAGCACCATTCGAACTCAGTGCT.........................................	23	1	108.00	0.00	90.00	0.00	18.00
................................................................................................................TAGCACCATCCGAAATCAGTG...........................................	21	1	106.00	0.00	2.00	0.00	104.00
................................................................................................................TAGCACCATTCGAAATCACTG...........................................	21	1	105.00	0.00	9.00	0.00	96.00
................................................................................................................TAGCGCCATTCGAAATCAGTGC..........................................	22	1	104.00	0.00	15.00	0.00	89.00
................................................................................................................TAGCACCGTTCGAAATCAGTG...........................................	21	1	102.00	0.00	3.00	0.00	99.00
................................................................................................................TAGTACCATTCGAAATCAGTGC..........................................	22	1	100.00	0.00	8.00	0.00	92.00
................................................................................................................TAGCACCATTCGCAATCAGTG...........................................	21	1	99.00	0.00	27.00	0.00	72.00
................................................................................................................TAGCACCATTCGAAATCAGTGCTT........................................	24	1	96.00	0.00	21.00	0.00	75.00
................................................................................................................TAGCACCATTCGAAATCGGTG...........................................	21	1	96.00	0.00	4.00	0.00	92.00
................................................................................................................TAGTACCATTCGAAATCAGTG...........................................	21	1	95.00	0.00	3.00	0.00	92.00
................................................................................................................TAGGACCATTCGAAATCAGTG...........................................	21	1	95.00	0.00	4.00	0.00	91.00
................................................................................................................TAGCACTATTCGAAATCAGTGC..........................................	22	1	94.00	0.00	28.00	0.00	66.00
................................................................................................................CAGCACCATTCGAAATCAGTGC..........................................	22	1	92.00	0.00	16.00	0.00	76.00
................................................................................................................TAACACCATTCGAAATCAGTGCT.........................................	23	1	91.00	0.00	8.00	0.00	83.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGCT.........................................	24	1	91.00	0.00	11.00	0.00	80.00
................................................................................................................TAGCACCATTCGAAGTCAGTGC..........................................	22	1	90.00	0.00	11.00	0.00	79.00
................................................................................................................TAGCACCACTCGAAATCAGTGC..........................................	22	1	89.00	0.00	11.00	0.00	78.00
................................................................................................................TAGCACCATTCGAAATTAGTG...........................................	21	1	88.00	0.00	1.00	0.00	87.00
...................................................................................................................CACCATTCGAAATCAGTGC..........................................	19	1	87.00	0.00	2.00	0.00	85.00
................................................................................................................TAGCACCATTCAAAATCAGTGCT.........................................	23	1	86.00	0.00	9.00	0.00	77.00
................................................................................................................TAGCACCATTCGGAATCAGTG...........................................	21	1	85.00	0.00	8.00	0.00	77.00
................................................................................................................TAGCACCATTCGAGATCAGTGC..........................................	22	1	82.00	0.00	9.00	0.00	73.00

droEug1

TC----------------------------ACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA--CATA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGCCT

Size

Hit Count

Total Norm

droBia1

ACT----------------------CTTCCCCTTCGAATCGAAGAACTGAGATCGACTGGTGCATAGATAT----CAGGGAAA--GCCA-----CCC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAGCAATCAGCAGAG------------TGTCT

Size

Hit Count

Total Norm

droTak1

GCT------------------CGC-------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA-ACCCA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTCT

Size

Hit Count

Total Norm

droEle1

CT----------------------------TCTTCGAATCGAAGAACTGAGCTCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGTCT

Size

Hit Count

Total Norm

droRho1

ATCCACC-----------------CAGCACACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGCCT

Size

Hit Count

Total Norm

droFic1

ATCCACA-----------------CAGAAGCCTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATAC--CAAGGAAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTC-

Size

Hit Count

Total Norm

droKik1

A-------------------------GGACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGACACCCG-----CTT----AT-TT-AACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCAATCAGCAGAG------------TGTC-

Size

Hit Count

Total Norm

droAna3

GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAGA------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	54820.00	313.00	36029.00	18477.00	1.00
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	40643.00	107.00	38918.00	1617.00	1.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	31870.00	142.00	24987.00	6740.00	1.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	7918.00	158.00	7293.00	467.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	7386.00	360.00	3069.00	3957.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	4755.00	356.00	2180.00	2219.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	2440.00	86.00	1382.00	972.00	0.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	1831.00	49.00	1682.00	100.00	0.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	1724.00	67.00	1416.00	241.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTG...........................................	21	1	1144.00	1.00	1141.00	2.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGCT.........................................	23	1	1053.00	3.00	1030.00	20.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	854.00	5.00	592.00	257.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGC..........................................	22	1	749.00	3.00	739.00	7.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	740.00	4.00	444.00	292.00	0.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	617.00	0.00	311.00	306.00	0.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	560.00	14.00	508.00	38.00	0.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	523.00	14.00	477.00	32.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTT...........................................	21	1	457.00	1.00	407.00	49.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTTCT.........................................	23	1	397.00	2.00	370.00	25.00	0.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	301.00	13.00	270.00	18.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGCT.........................................	23	1	296.00	0.00	62.00	234.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTTC..........................................	22	1	291.00	1.00	271.00	19.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTA...........................................	21	1	269.00	2.00	248.00	19.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTACT.........................................	23	1	268.00	5.00	249.00	14.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGAT.........................................	23	1	235.00	1.00	208.00	26.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGT............................................................................................................	23	1	224.00	7.00	200.00	17.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTG...........................................	21	1	201.00	0.00	189.00	12.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTGCT.........................................	23	1	195.00	0.00	148.00	47.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCTT........................................	24	1	195.00	1.00	134.00	60.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAA...........................................................................................................	24	1	186.00	0.00	178.00	8.00	0.00
.............................................ACTGAGATCGATTGGTGCA................................................................................................................	19	1	175.00	6.00	162.00	7.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTAC..........................................	22	1	174.00	1.00	164.00	9.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGC..........................................	22	1	170.00	1.00	28.00	141.00	0.00
...................................................................................................................CACCATTCGAAATCAGTG...........................................	18	1	168.00	0.00	158.00	10.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGCT.........................................	23	1	167.00	1.00	9.00	157.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTGCT.........................................	23	1	160.00	0.00	79.00	81.00	0.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	158.00	2.00	133.00	23.00	0.00
....................................................................TAT----CAAGGAGA--TCCG-----ATC----AT-TTC.....................................................................	23	1	149.00	3.00	126.00	20.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTCCT.........................................	23	1	148.00	2.00	108.00	38.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTGCT.........................................	23	1	143.00	0.00	73.00	70.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGCT.........................................	23	1	132.00	0.00	15.00	117.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTGC..........................................	22	1	129.00	0.00	113.00	16.00	0.00
................................................................................................................TAGCACCATGCGAAATCAGTGCT.........................................	23	1	128.00	0.00	4.00	124.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGCT.........................................	23	1	118.00	0.00	18.00	100.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTC...........................................	21	1	115.00	1.00	112.00	2.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTA.........................................	23	1	115.00	3.00	74.00	38.00	0.00
................................................................................................................TAGCACCATTCTAAATCAGTGCT.........................................	23	1	111.00	1.00	86.00	24.00	0.00
................................................................................................................TAGCACCATTCTAAATCAGTG...........................................	21	1	105.00	1.00	102.00	2.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTGC..........................................	22	1	101.00	0.00	67.00	34.00	0.00
................................................................................................................TAGCACCATTCGAAGTCAGTGCT.........................................	23	1	101.00	1.00	54.00	46.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	100.00	0.00	60.00	40.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGT..........................................	22	1	98.00	2.00	93.00	3.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTG...........................................	21	1	95.00	0.00	93.00	2.00	0.00
................................................................................................................TAGCACCGTTCGAAATCAGTGCT.........................................	23	1	95.00	0.00	31.00	64.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	95.00	1.00	47.00	47.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTG...........................................	21	1	94.00	0.00	88.00	6.00	0.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	88.00	0.00	18.00	70.00	0.00
................................................................................................................TAGCACCATCCGAAATCAGTGCT.........................................	23	1	86.00	0.00	39.00	47.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGCT.........................................	23	1	83.00	0.00	11.00	72.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTGCT.........................................	23	1	83.00	0.00	51.00	32.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTCC..........................................	22	1	81.00	1.00	60.00	20.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTG...........................................	21	1	79.00	0.00	76.00	3.00	0.00
................................................................................................................TAGCACCATTCAAAATCAGTGCT.........................................	23	1	77.00	2.00	52.00	23.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTGC..........................................	22	1	74.00	1.00	54.00	19.00	0.00
................................................................................................................TAGCACCATTTGAAATCAGTGCT.........................................	23	1	73.00	2.00	49.00	22.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTGCT.........................................	23	1	71.00	0.00	10.00	61.00	0.00
................................................................................................................TAGCACCATTCGAAACCAGTGCT.........................................	23	1	71.00	1.00	33.00	37.00	0.00
................................................................................................................TAGCGCCATTCGAAATCAGTGCT.........................................	23	1	70.00	0.00	42.00	28.00	0.00
................................................................................................................TAGCACCATTCGGAATCAGTGCT.........................................	23	1	70.00	0.00	23.00	47.00	0.00
................................................................................................................TAGCACCATTCGAAGTCAGTG...........................................	21	1	69.00	0.00	64.00	5.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGC..........................................	22	1	68.00	0.00	7.00	61.00	0.00
................................................................................................................TAGCACCATTCAAAATCAGTG...........................................	21	1	68.00	1.00	67.00	0.00	0.00
................................................................................................................TAGCACCACTCGAAATCAGTGCT.........................................	23	1	68.00	1.00	37.00	30.00	0.00
................................................................................................................TAACACCATTCGAAATCAGTGCT.........................................	23	1	68.00	0.00	26.00	42.00	0.00
................................................................................................................TAGCACCATTCGAGATCAGTGCT.........................................	23	1	68.00	3.00	45.00	20.00	0.00
................................................................................................................AAGCACCATTCGAAATCAGTGCT.........................................	23	1	66.00	0.00	6.00	60.00	0.00
.............................................ACGGAGATCGATTGGTGCATAGA............................................................................................................	23	1	65.00	0.00	59.00	6.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTGC..........................................	22	1	64.00	0.00	51.00	13.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTGCT.........................................	23	1	64.00	1.00	34.00	29.00	0.00
................................................................................................................TAGCACTATTCGAAATCAGTGCT.........................................	23	1	64.00	0.00	25.00	39.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGCT.........................................	23	1	63.00	0.00	9.00	54.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCG.........................................	23	1	62.00	0.00	36.00	26.00	0.00
................................................................................................................TAGCACCATTCTAAATCAGTGC..........................................	22	1	61.00	1.00	54.00	6.00	0.00
................................................................................................................TAGCACCATTCCAAATCAGTGCT.........................................	23	1	61.00	0.00	16.00	45.00	0.00
................................................................................................................GAGCACCATTCGAAATCAGTGCT.........................................	23	1	60.00	0.00	9.00	51.00	0.00
................................................................................................................TATCACCATTCGAAATCAGT............................................	20	1	58.00	3.00	53.00	2.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGC..........................................	22	1	58.00	2.00	10.00	46.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTGC..........................................	22	1	58.00	0.00	42.00	16.00	0.00
................................................................................................................TAGCACCATTTGAAATCAGTG...........................................	21	1	58.00	0.00	56.00	2.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTG...........................................	21	1	56.00	0.00	55.00	1.00	0.00
................................................................................................................TACCACCATTCGAAATCAGTGC..........................................	22	1	52.00	0.00	39.00	13.00	0.00
..............................................CTGAGATCGATTGGTGCATAGA............................................................................................................	22	1	52.00	3.00	47.00	2.00	0.00
................................................................................................................TACCACCATTCGAAATCAGTG...........................................	21	1	51.00	0.00	51.00	0.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGC..........................................	22	1	51.00	1.00	2.00	48.00	0.00
................................................................................................................TAGCACCATTCGAAGTCAGTGC..........................................	22	1	50.00	0.00	23.00	27.00	0.00
................................................................................................................TAGCATCATTCGAAATCAGTGCT.........................................	23	1	50.00	0.00	26.00	24.00	0.00
................................................................................................................TAGCACCAGTCGAAATCAGTGCT.........................................	23	1	50.00	0.00	0.00	50.00	0.00
................................................................................................................TAGCGCCATTCGAAATCAGTG...........................................	21	1	50.00	0.00	47.00	3.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTG...........................................	21	1	50.00	0.00	47.00	3.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGC..........................................	22	1	50.00	0.00	5.00	45.00	0.00
................................................................................................................TAGTACCATTCGAAATCAGTGCT.........................................	23	1	49.00	0.00	27.00	22.00	0.00

droBip1

GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACCAA------------------

Size

Hit Count

Total Norm

dp4

TCT------------------TACAATTACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAGGA--CTCG-----CTA----ATTTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA------------------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	24943.00	65.00	3.00	24875.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	12361.00	23.00	1.00	12335.00	2.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	2712.00	32.00	0.00	2680.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	1871.00	17.00	0.00	1854.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	1089.00	25.00	0.00	1064.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	486.00	42.00	2.00	424.00	18.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	380.00	0.00	0.00	380.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	246.00	1.00	0.00	245.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	190.00	1.00	0.00	189.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGCT.........................................	23	1	140.00	0.00	0.00	140.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGC..........................................	22	1	110.00	0.00	0.00	110.00	0.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	95.00	1.00	0.00	94.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGCT.........................................	23	1	87.00	0.00	0.00	87.00	0.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	83.00	9.00	0.00	73.00	1.00
................................................................................................................TAGCACCATTCGTAATCAGTGCT.........................................	23	1	80.00	0.00	0.00	80.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGCT.........................................	23	1	67.00	0.00	0.00	67.00	0.00
................................................................................................................TAACACCATTCGAAATCAGTGCT.........................................	23	1	64.00	0.00	0.00	64.00	0.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	61.00	4.00	0.00	55.00	2.00
................................................................................................................TAGCACCATTCGAAATCAGGGC..........................................	22	1	52.00	0.00	0.00	52.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGCT.........................................	23	1	51.00	0.00	0.00	51.00	0.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	50.00	4.00	0.00	44.00	2.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	48.00	12.00	0.00	33.00	3.00
................................................................................................................TACCACCATTCGAAATCAGTGCT.........................................	23	1	47.00	0.00	0.00	47.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTGCT.........................................	23	1	45.00	0.00	0.00	45.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCTT........................................	24	1	44.00	0.00	0.00	44.00	0.00
................................................................................................................TAGCACCGTTCGAAATCAGTGCT.........................................	23	1	43.00	0.00	1.00	42.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	42.00	0.00	0.00	42.00	0.00
................................................................................................................TAGCACCATCCGAAATCAGTGCT.........................................	23	1	41.00	0.00	0.00	41.00	0.00
................................................................................................................TAGCACCATTCGAAGTCAGTGCT.........................................	23	1	41.00	0.00	0.00	41.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGC..........................................	22	1	39.00	0.00	0.00	39.00	0.00
................................................................................................................TAGCACCATGCGAAATCAGTGCT.........................................	23	1	39.00	0.00	0.00	39.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTGCT.........................................	23	1	38.00	0.00	0.00	38.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGC..........................................	22	1	37.00	0.00	0.00	37.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGCT.........................................	23	1	36.00	0.00	0.00	36.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGCT.........................................	23	1	35.00	0.00	0.00	35.00	0.00
.................................................................................................................AGCACCATTCGAAATCAGTGCT.........................................	22	1	34.00	1.00	0.00	33.00	0.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGCT.........................................	24	1	34.00	0.00	0.00	34.00	0.00
................................................................................................................TAGCACCACTCGAAATCAGTGCT.........................................	23	1	34.00	0.00	0.00	34.00	0.00
................................................................................................................TAGCACTATTCGAAATCAGTGCT.........................................	23	1	33.00	0.00	0.00	33.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTGCT.........................................	23	1	32.00	0.00	0.00	32.00	0.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	32.00	0.00	0.00	32.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	31.00	0.00	0.00	31.00	0.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	31.00	5.00	0.00	22.00	4.00
................................................................................................................TAGCGCCATTCGAAATCAGTGCT.........................................	23	1	30.00	0.00	0.00	30.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGC..........................................	22	1	29.00	0.00	1.00	28.00	0.00
................................................................................................................TAGCATCATTCGAAATCAGTGCT.........................................	23	1	29.00	0.00	0.00	29.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTGCT.........................................	23	1	29.00	0.00	0.00	29.00	0.00
................................................................................................................TAGCACCATTCGGAATCAGTGCT.........................................	23	1	28.00	0.00	0.00	28.00	0.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGC..........................................	23	1	28.00	0.00	0.00	28.00	0.00
................................................................................................................TAACACCATTCGAAATCAGTGC..........................................	22	1	26.00	0.00	0.00	26.00	0.00
................................................................................................................TGGCACCATTCGAAATCAGTGCT.........................................	23	1	25.00	0.00	0.00	25.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGAT.........................................	23	1	25.00	0.00	0.00	25.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTCCT.........................................	23	1	24.00	0.00	0.00	24.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGC..........................................	22	1	24.00	0.00	0.00	24.00	0.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	23.00	4.00	0.00	17.00	2.00
................................................................................................................TAGCACCATTCGAAACCAGTGCT.........................................	23	1	23.00	0.00	0.00	23.00	0.00
................................................................................................................TAGCACCATTCCAAATCAGTGCT.........................................	23	1	23.00	0.00	0.00	23.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTGC..........................................	22	1	22.00	0.00	0.00	22.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTGC..........................................	22	1	22.00	0.00	0.00	22.00	0.00
................................................................................................................TAGCACCATTCAAAATCAGTGCT.........................................	23	1	20.00	0.00	0.00	20.00	0.00
................................................................................................................TACCACCATTCGAAATCAGTGC..........................................	22	1	20.00	0.00	0.00	20.00	0.00
................................................................................................................TAGCACCATTCGAGATCAGTGCT.........................................	23	1	20.00	0.00	0.00	20.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTGC..........................................	22	1	20.00	0.00	0.00	20.00	0.00
................................................................................................................TAGCACCATTCGAAAGCAGTGCT.........................................	23	1	19.00	0.00	0.00	19.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTGCT.........................................	23	1	19.00	0.00	0.00	19.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTGC..........................................	22	1	19.00	0.00	0.00	19.00	0.00
................................................................................................................TAGCAGCATTCGAAATCAGTGCT.........................................	23	1	18.00	0.00	0.00	18.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGT..........................................	22	1	18.00	0.00	0.00	18.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTACT.........................................	23	1	18.00	0.00	0.00	18.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTGCT.........................................	23	1	18.00	0.00	0.00	18.00	0.00
................................................................................................................TAGCACCATTCGAAATCGGTGCT.........................................	23	1	18.00	0.00	0.00	18.00	0.00
................................................................................................................TAGCACCATGCGTAATCAGTGCT.........................................	23	1	17.00	0.00	0.00	17.00	0.00
................................................................................................................TAGCACCAGTCGAAATCAGTGCT.........................................	23	1	17.00	0.00	0.00	17.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCG.........................................	23	1	17.00	0.00	0.00	17.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTGC..........................................	22	1	17.00	0.00	0.00	17.00	0.00
................................................................................................................AAGCACCATTCGAAATCAGTGCT.........................................	23	1	17.00	0.00	0.00	17.00	0.00
.................................................................................................................AGCACCATTCGAAATCAGTGC..........................................	21	1	17.00	0.00	0.00	17.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTA.........................................	23	1	16.00	0.00	0.00	16.00	0.00
................................................................................................................TAGCACCATTCGAAGTCAGTGC..........................................	22	1	16.00	0.00	0.00	16.00	0.00
................................................................................................................TAGCACCATTCGAATTCAGTGCT.........................................	23	1	16.00	0.00	0.00	16.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTGC..........................................	22	1	16.00	0.00	0.00	16.00	0.00
................................................................................................................TAGCACCATCCGAAATCAGTGC..........................................	22	1	15.00	0.00	0.00	15.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTA...........................................	21	1	14.00	1.00	0.00	13.00	0.00
................................................................................................................GAGCACCATTCGAAATCAGTGCT.........................................	23	1	14.00	0.00	0.00	14.00	0.00
................................................................................................................TAGCGCCATTCGAAATCAGTGC..........................................	22	1	14.00	0.00	0.00	14.00	0.00
................................................................................................................TAGCACCATGCGAAATCAGTGC..........................................	22	1	14.00	0.00	0.00	14.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGC..........................................	22	1	14.00	0.00	0.00	14.00	0.00
................................................................................................................TAGCACCATTCGAAATCCGTGCT.........................................	23	1	14.00	0.00	0.00	14.00	0.00
................................................................................................................TAGCATCATTCGAAATCAGTGC..........................................	22	1	14.00	0.00	0.00	14.00	0.00
................................................................................................................TAGCACCACTCGAAATCAGTGC..........................................	22	1	14.00	0.00	0.00	14.00	0.00
................................................................................................................TAGCACCCTTCGAAATCAGTGCT.........................................	23	1	13.00	1.00	0.00	12.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTGC..........................................	22	1	13.00	0.00	0.00	13.00	0.00
..................................................................................................................GCACCATTCGAAATCAGTGCT.........................................	21	1	13.00	0.00	0.00	13.00	0.00
................................................................................................................TAGCACCATTCGAAATTAGTGCT.........................................	23	1	13.00	0.00	0.00	13.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTTCT.........................................	23	1	13.00	0.00	0.00	13.00	0.00
................................................................................................................TGGCACCATTCGAAATCAGTGC..........................................	22	1	13.00	0.00	0.00	13.00	0.00
................................................................................................................TAGCACCATTCGGAATCAGTGC..........................................	22	1	12.00	0.00	0.00	12.00	0.00
................................................................................................................TAGCACCATTCGAAAACAGTGCT.........................................	23	1	12.00	0.00	0.00	12.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTAC..........................................	22	1	12.00	0.00	0.00	12.00	0.00
................................................................................................................TAGCAACATTCGAAATCAGTGC..........................................	22	1	12.00	0.00	0.00	12.00	0.00
................................................................................................................TAGCACCATTTGAAATCAGTGCT.........................................	23	1	12.00	0.00	0.00	12.00	0.00

droPer1

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

ACA------------------------AATTGTTCGAATTAAAGAACTGAGATCGATTGGTGCATAGATAA----TATGCGAA--TTCTATCATTTGATTTCA-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAAG------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	148215.00	19.00	71.00	147030.00	1095.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	93382.00	82.00	42.00	15324.00	77934.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	48610.00	13.00	89.00	44265.00	4243.00
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	44217.00	50.00	95.00	43840.00	232.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	10839.00	9.00	4.00	1192.00	9634.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	9442.00	17.00	0.00	1775.00	7650.00
.............................................ACTGAGATCGATTGGTGCATAGG............................................................................................................	23	1	7101.00	0.00	0.00	16.00	7085.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	4435.00	49.00	11.00	4313.00	62.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	3470.00	36.00	7.00	3402.00	25.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	2633.00	2.00	2.00	282.00	2347.00
.............................................ACTGAGATCGATTGGTGCATAGC............................................................................................................	23	1	2238.00	0.00	0.00	42.00	2196.00
.............................................ACTGAGATCGATTGGTGCATAGT............................................................................................................	23	1	1238.00	1.00	0.00	151.00	1086.00
.............................................ACTGAGATCGATTGGTGCA................................................................................................................	19	1	1221.00	0.00	0.00	73.00	1148.00
.............................................ACTGAGATCGATTGGTGCATAGAA...........................................................................................................	24	1	1161.00	0.00	2.00	278.00	881.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	901.00	0.00	0.00	126.00	775.00
.............................................ACTGAGATCGATTGGGGCATAGA............................................................................................................	23	1	825.00	0.00	0.00	95.00	730.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	655.00	0.00	7.00	604.00	44.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	636.00	4.00	2.00	626.00	4.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	627.00	1.00	2.00	614.00	10.00
..............................................CTGAGATCGATTGGTGCATAGA............................................................................................................	22	1	580.00	2.00	1.00	264.00	313.00
................................................................................................................CAGCACCATTCGAAATCAGTG...........................................	21	1	521.00	0.00	0.00	521.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTG...........................................	21	1	485.00	0.00	0.00	485.00	0.00
...................................................................................................................CACCATTCGAAATCAGTG...........................................	18	1	464.00	0.00	0.00	451.00	13.00
................................................................................................................TAGAACCATTCGAAATCAGTG...........................................	21	1	436.00	0.00	0.00	436.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTG...........................................	21	1	428.00	0.00	0.00	428.00	0.00
................................................................................................................TAGCAACATTCGAAATCAGTG...........................................	21	1	428.00	0.00	0.00	427.00	1.00
................................................................................................................TAGCACCATTCAAAATCAGTG...........................................	21	1	412.00	0.00	0.00	407.00	5.00
.............................................ACTGAGATCGATTGGTGCATAGAT...........................................................................................................	24	1	409.00	0.00	1.00	58.00	350.00
.............................................ACTGAGATCGATTGGTGCATAGAAA..........................................................................................................	25	1	370.00	0.00	0.00	107.00	263.00
................................................................................................................TAGCACCATTCGAAATCAATG...........................................	21	1	355.00	0.00	0.00	355.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	352.00	1.00	2.00	349.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTG...........................................	21	1	330.00	0.00	1.00	316.00	13.00
...............................................TGAGATCGATTGGTGCATAGAT...........................................................................................................	22	1	287.00	0.00	0.00	265.00	22.00
................................................................................................................TAGCACCATTCGAAATCAGTA...........................................	21	1	279.00	0.00	0.00	279.00	0.00
.............................................ACTGAGATCGATTGGTGCAC...............................................................................................................	20	1	277.00	0.00	0.00	4.00	273.00
...............................................................................................................CTAGCACCATTCGAAATCAGTG...........................................	22	1	273.00	0.00	0.00	273.00	0.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	272.00	0.00	1.00	56.00	215.00
................................................................................................................AAGCACCATTCGAAATCAGTG...........................................	21	1	267.00	0.00	0.00	267.00	0.00
.............................................ACTGAGATCGATGGGTGCATAGA............................................................................................................	23	1	240.00	0.00	0.00	1.00	239.00
................................................................................................................TACCACCATTCGAAATCAGTG...........................................	21	1	238.00	0.00	0.00	232.00	6.00
.............................................ACTGAGATCGATTGGTTCATAGA............................................................................................................	23	1	229.00	0.00	0.00	13.00	216.00
................................................................................................................TAGCACCATTCGAAATCAGCG...........................................	21	1	208.00	0.00	0.00	208.00	0.00
.............................................ACTGAGATCGATTGGTGCATGG.............................................................................................................	22	1	204.00	0.00	0.00	0.00	204.00
...............................................TGAGATCGATTGGTGCATAGA............................................................................................................	21	1	203.00	0.00	0.00	186.00	17.00
................................................................................................................TAACACCATTCGAAATCAGTG...........................................	21	1	195.00	0.00	0.00	195.00	0.00
.............................................ACTGAGATCGATTGGAGCATAGA............................................................................................................	23	1	188.00	0.00	0.00	44.00	144.00
.............................................ACTGAGATCGATTTGTGCATAGA............................................................................................................	23	1	188.00	0.00	0.00	16.00	172.00
.............................................ACTGAGATCGATTGGCGCATAGA............................................................................................................	23	1	187.00	1.00	0.00	70.00	116.00
................................................................................................................TAGCACCATTCGAAGTCAGTG...........................................	21	1	187.00	0.00	0.00	186.00	1.00
................................................................................................................TAGCACCATTCGAGATCAGTG...........................................	21	1	186.00	0.00	0.00	186.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGC..........................................	22	1	185.00	0.00	1.00	177.00	7.00
................................................................................................................TAGCACCACTCGAAATCAGTG...........................................	21	1	183.00	0.00	0.00	182.00	1.00
................................................................................................................GAGCACCATTCGAAATCAGTG...........................................	21	1	182.00	0.00	0.00	181.00	1.00
................................................................................................................TAGCACCATCCGAAATCAGTG...........................................	21	1	181.00	0.00	1.00	180.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGAT.........................................	23	1	173.00	0.00	0.00	173.00	0.00
.................................................................................................................AGCACCATTCGAAATCAGTG...........................................	20	1	171.00	0.00	0.00	171.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTGC..........................................	22	1	169.00	0.00	0.00	168.00	1.00
................................................................................................................TAGCACCATTCGAAACCAGTG...........................................	21	1	166.00	0.00	0.00	165.00	1.00
.............................................ACTGAGATCGATTxGTGCATAGA............................................................................................................	22	1	166.00	0.00	0.00	15.00	151.00
................................................................................................................TAGCACCATTCGAAATCATTG...........................................	21	1	166.00	0.00	0.00	166.00	0.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	165.00	0.00	0.00	13.00	152.00
................................................................................................................TAGCGCCATTCGAAATCAGTG...........................................	21	1	164.00	0.00	0.00	163.00	1.00
.............................................ACTGAGATCGATAGGTGCATAGA............................................................................................................	23	1	163.00	0.00	0.00	9.00	154.00
................................................................................................................TAGCACCCTTCGAAATCAGTG...........................................	21	1	160.00	0.00	0.00	160.00	0.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	156.00	0.00	0.00	156.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTGC..........................................	22	1	155.00	0.00	0.00	153.00	2.00
................................................................................................................CAGCACCATTCGAAATCAGTGCT.........................................	23	1	146.00	0.00	0.00	146.00	0.00
................................................................................................................TAGCATCATTCGAAATCAGTG...........................................	21	1	145.00	0.00	0.00	143.00	2.00
.............................................ACTGAGATCGATTGGGGCAT...............................................................................................................	20	1	144.00	0.00	0.00	14.00	130.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	142.00	0.00	0.00	142.00	0.00
.............................................ACTGAGATCGATTGGTCCATAGA............................................................................................................	23	1	141.00	0.00	0.00	12.00	129.00
................................................................................................................TAGCCCCATTCGAAATCAGTG...........................................	21	1	140.00	0.00	0.00	140.00	0.00
................................................................................................................TAGCACCATTTGAAATCAGTG...........................................	21	1	140.00	0.00	0.00	140.00	0.00
.............................................ACTGAGATCGATTGGTGCATAA.............................................................................................................	22	1	136.00	0.00	0.00	16.00	120.00
................................................................................................................TAGCAACATTCGAAATCAGTGC..........................................	22	1	135.00	0.00	0.00	133.00	2.00
................................................................................................................TAGCACCATTCAAAATCAGTGC..........................................	22	1	133.00	0.00	0.00	121.00	12.00
................................................................................................................TAGTACCATTCGAAATCAGTGC..........................................	22	1	132.00	0.00	0.00	131.00	1.00
................................................................................................................TAGCACCATTCGAAATCAGTT...........................................	21	1	132.00	0.00	0.00	132.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTG...........................................	21	1	131.00	0.00	0.00	131.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGC..........................................	22	1	129.00	0.00	0.00	117.00	12.00
................................................................................................................TAGCxCCATTCGAAATCAGTGC..........................................	21	1	129.00	0.00	0.00	129.00	0.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGC..........................................	23	1	128.00	0.00	3.00	106.00	19.00
................................................................................................................TAGCACCATTCGAAATTAGTG...........................................	21	1	127.00	0.00	0.00	126.00	1.00
................................................................................................................TAGCACCATTAGAAATCAGTGC..........................................	22	1	126.00	0.00	0.00	124.00	2.00
.............................................ACTGAGATCGATTGTTGCATAGA............................................................................................................	23	1	125.00	0.00	1.00	15.00	109.00
................................................................................................................TAGCACCATTCGAAATCCGTG...........................................	21	1	125.00	0.00	0.00	125.00	0.00
................................................................................................................TAGCACCGTTCGAAATCAGTG...........................................	21	1	124.00	0.00	0.00	124.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTGC..........................................	22	1	124.00	0.00	0.00	124.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTG...........................................	21	1	123.00	0.00	0.00	123.00	0.00
................................................................................................................TAGCACCATTCAAAATCAGTGCT.........................................	23	1	123.00	0.00	1.00	122.00	0.00
.............................................ACTGAGATCGATTGGGGCATAG.............................................................................................................	22	1	123.00	0.00	0.00	7.00	116.00
................................................................................................................TAGCACCATTCGGAATCAGTG...........................................	21	1	121.00	0.00	0.00	117.00	4.00
................................................................................................................TAGCACCATTAGAAATCAGTGCT.........................................	23	1	119.00	0.00	0.00	119.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTGCT.........................................	23	1	119.00	0.00	1.00	118.00	0.00
................................................................................................................TAGTACCATTCGAAATCAGTG...........................................	21	1	116.00	0.00	0.00	115.00	1.00
................................................................................................................TGGCACCATTCGAAATCAGTG...........................................	21	1	114.00	0.00	0.00	114.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTG...........................................	21	1	114.00	0.00	0.00	113.00	1.00

droVir3

ATG------------------CAC-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGC--CCAAAAA--GTAA-----TTC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGGCG------------CATC-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	16319.00	25.00	16262.00	2.00	0.00	30.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	10066.00	29.00	439.00	1.00	230.00	9367.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	9728.00	24.00	9258.00	2.00	11.00	433.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	6552.00	20.00	272.00	0.00	95.00	6165.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	5431.00	26.00	213.00	0.00	98.00	5094.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	2941.00	9.00	2929.00	0.00	0.00	3.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	2812.00	28.00	2767.00	1.00	2.00	14.00
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	2723.00	9.00	2586.00	2.00	1.00	125.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	2479.00	16.00	215.00	0.00	52.00	2196.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	2329.00	10.00	226.00	1.00	29.00	2063.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	1688.00	6.00	95.00	0.00	32.00	1555.00
.............................................ACTGAGATCGATTGGTGCATAGG............................................................................................................	23	1	1298.00	0.00	0.00	0.00	30.00	1268.00
............................................AACTGAGATCGATTGGTGCATAGG............................................................................................................	24	1	717.00	0.00	0.00	0.00	18.00	699.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	542.00	1.00	537.00	0.00	0.00	4.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	480.00	1.00	471.00	0.00	0.00	8.00
............................................AACTGAGATCGATTGGTGCATA..............................................................................................................	22	1	417.00	5.00	26.00	0.00	5.00	381.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	412.00	1.00	411.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGT............................................................................................................	23	1	404.00	0.00	13.00	0.00	3.00	388.00
............................................AACTGAGATCGATTGGTGCATAGT............................................................................................................	24	1	380.00	0.00	14.00	0.00	4.00	362.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	373.00	5.00	49.00	0.00	5.00	314.00
................................................................................................................TAGCACCATTCGAAATCAGCGCT.........................................	23	1	329.00	0.00	329.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCA................................................................................................................	19	1	310.00	0.00	25.00	0.00	4.00	281.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	303.00	0.00	303.00	0.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCAC...............................................................................................................	21	1	302.00	0.00	2.00	0.00	5.00	295.00
................................................................................................................TAGCACCATTCGAAATCAGCGC..........................................	22	1	274.00	0.00	273.00	0.00	0.00	1.00
............................................AACTGAGATCGATTGGTGCA................................................................................................................	20	1	219.00	0.00	13.00	0.00	2.00	204.00
.............................................ACTGAGATCGATTGGTGCATAGAA...........................................................................................................	24	1	202.00	1.00	0.00	0.00	2.00	199.00
............................................AACTGAGATCGATTGGTGCATT..............................................................................................................	22	1	174.00	0.00	12.00	0.00	0.00	162.00
.............................................ACTGAGATCGATTGGTGC.................................................................................................................	18	1	146.00	0.00	0.00	0.00	1.00	145.00
............................................AACTGAGATCGATTGGTGCATAGAA...........................................................................................................	25	1	139.00	0.00	5.00	1.00	0.00	133.00
............................................AACTGAGATCGATTGGTGCATAT.............................................................................................................	23	1	137.00	0.00	4.00	0.00	1.00	132.00
.............................................ACTGAGATCGATTGGTGCATT..............................................................................................................	21	1	133.00	0.00	1.00	0.00	0.00	132.00
............................................AACTGAGATCGATTGGTGCATAGAT...........................................................................................................	25	1	113.00	0.00	3.00	0.00	1.00	109.00
................................................................................................................TAGCACCATGCGAAATCAGTGCT.........................................	23	1	110.00	0.00	110.00	0.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCAG...............................................................................................................	21	1	109.00	0.00	0.00	0.00	2.00	107.00
................................................................................................................TAGCACCATTCGTAATCAGTGCT.........................................	23	1	109.00	0.00	109.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAT...........................................................................................................	24	1	107.00	0.00	1.00	0.00	3.00	103.00
.............................................ACTGAGATCGATTGGGGCATAGA............................................................................................................	23	1	102.00	0.00	3.00	0.00	3.00	96.00
.............................................ACTGAGATCGATTGGTGCAC...............................................................................................................	20	1	95.00	0.00	1.00	0.00	3.00	91.00
................................................................................................................TAGCACCATTCGAAATCAGTT...........................................	21	1	95.00	1.00	93.00	0.00	0.00	1.00
................................................................................................................TAGCACAATTCGAAATCAGTGCT.........................................	23	1	87.00	0.00	87.00	0.00	0.00	0.00
............................................AACTGAGATCGATTGGTGCATAA.............................................................................................................	23	1	84.00	0.00	4.00	0.00	0.00	80.00
................................................................................................................TAGCACCATTCGAAATCAGTGCTT........................................	24	1	78.00	0.00	78.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAT.............................................................................................................	22	1	71.00	0.00	0.00	0.00	0.00	71.00
............................................AACTGAGATCGATTGGTGCATTT.............................................................................................................	23	1	70.00	0.00	4.00	0.00	0.00	66.00
............................................AACTGAGATCGATTGGTGCATGG.............................................................................................................	23	1	67.00	0.00	1.00	0.00	0.00	66.00
............................................AACTGAGATCGATTGGTGCATAGC............................................................................................................	24	1	66.00	0.00	0.00	0.00	2.00	64.00
................................................................................................................TAGCACCATTCGCAATCAGTGCT.........................................	23	1	62.00	0.00	62.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAAA..........................................................................................................	25	1	61.00	0.00	2.00	0.00	0.00	59.00
................................................................................................................TAGCACCATGCGAAATCAGTGC..........................................	22	1	55.00	0.00	55.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGT..........................................	22	1	50.00	0.00	50.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTA...........................................	21	1	49.00	0.00	49.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATGG.............................................................................................................	22	1	49.00	0.00	1.00	0.00	1.00	47.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	48.00	0.00	45.00	0.00	0.00	3.00
................................................................................................................TAGCACCATTCGAAATCAGGGCT.........................................	23	1	47.00	0.00	47.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGCT.........................................	23	1	46.00	0.00	46.00	0.00	0.00	0.00
............................................AACTGAGATCGATTGGGGCAT...............................................................................................................	21	1	45.00	0.00	3.00	0.00	1.00	41.00
................................................................................................................TAGCACCATTCGAAATCAGGGC..........................................	22	1	43.00	0.00	42.00	0.00	0.00	1.00
............................................AACTGAGATCGATTGGTGCATAGAAA..........................................................................................................	26	1	42.00	0.00	0.00	0.00	2.00	40.00
................................................................................................................TAGCACCATTCGTAATCAGTGC..........................................	22	1	41.00	0.00	41.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCG...........................................	21	1	41.00	0.00	41.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTGCT.........................................	23	1	41.00	0.00	41.00	0.00	0.00	0.00
..............................................CTGAGATCGATTGGTGCATAGA............................................................................................................	22	1	40.00	0.00	2.00	0.00	1.00	37.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	40.00	0.00	40.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAA.............................................................................................................	22	1	40.00	0.00	1.00	0.00	1.00	38.00
................................................................................................................TAGCACCATGCGTAATCAGTGCT.........................................	23	1	39.00	0.00	39.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTCC..........................................	22	1	39.00	0.00	39.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTA.........................................	23	1	38.00	0.00	38.00	0.00	0.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTGCT.........................................	23	1	38.00	0.00	38.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGT.................................................................................................................	18	1	38.00	0.00	3.00	0.00	0.00	35.00
................................................................................................................TAGCACCATGCGAAATCAGCGCT.........................................	23	1	37.00	0.00	37.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTCCT.........................................	23	1	37.00	0.00	37.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGGGCAT...............................................................................................................	20	1	37.00	0.00	1.00	0.00	1.00	35.00
................................................................................................................TAGCACCATTCGAAATCAGC............................................	20	1	37.00	0.00	37.00	0.00	0.00	0.00
................................................................................................................TAGCAGCATTCGAAATCAGTGCT.........................................	23	1	34.00	0.00	34.00	0.00	0.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTGC..........................................	22	1	33.00	0.00	33.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAAAA.........................................................................................................	26	1	33.00	0.00	2.00	0.00	0.00	31.00
................................................................................................................TAGCACCATTCGTAATCAGTGT..........................................	22	1	33.00	0.00	33.00	0.00	0.00	0.00
................................................................................................................TAGCACCACTCGAAATCAGTGCT.........................................	23	1	32.00	0.00	32.00	0.00	0.00	0.00
............................................AACTGAGATCGATTGGTGC.................................................................................................................	19	1	32.00	0.00	0.00	0.00	0.00	32.00
................................................................................................................TAGCACCATCCGAAATCAGTGCT.........................................	23	1	29.00	0.00	29.00	0.00	0.00	0.00
................................................................................................................TAGCACCGTTCGAAATCAGTGCT.........................................	23	1	29.00	0.00	29.00	0.00	0.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGCGCT.........................................	23	1	29.00	0.00	29.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCCTAGA............................................................................................................	23	1	28.00	0.00	2.00	0.00	0.00	26.00
................................................................................................................TAGCACCATGCGAAATCAGCGC..........................................	22	1	28.00	0.00	28.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGGGCATAG.............................................................................................................	22	1	26.00	0.00	0.00	0.00	0.00	26.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	26.00	0.00	26.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGCT.........................................	23	1	26.00	0.00	26.00	0.00	0.00	0.00
.............................................ACTGAGATCGATTGGTGCAG...............................................................................................................	20	1	26.00	0.00	0.00	0.00	0.00	26.00
................................................................................................................TAGCACCATTCGTAATCAGT............................................	20	1	26.00	0.00	26.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGGAATCAGTGCT.........................................	23	1	25.00	0.00	25.00	0.00	0.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGCGC..........................................	22	1	25.00	0.00	25.00	0.00	0.00	0.00
................................................................................................................TAGCACCAGTCGAAATCAGTGCT.........................................	23	1	25.00	0.00	25.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGC..........................................	22	1	25.00	0.00	25.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGG..........................................	22	1	24.00	0.00	15.00	0.00	0.00	9.00
.................................................................................................................AGCACCATTCGAAATCAGTGCT.........................................	22	1	24.00	0.00	24.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAACCAGTGCT.........................................	23	1	24.00	0.00	24.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCTAAATCAGTGCT.........................................	23	1	24.00	0.00	24.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAAATCCGTGCT.........................................	23	1	24.00	0.00	24.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTG...........................................	21	1	23.00	0.00	23.00	0.00	0.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGC..........................................	22	1	23.00	0.00	23.00	0.00	0.00	0.00

droMoj3

ACACACCCAGCAGACATCAAACACCACACCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATAACGCCCAAA-AAG--TCAT-----TTT----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGGTGTATGGGAACAAGTGTC-	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
................................................................................................................TAGCACCATTCGAAATCAGTGCT.........................................	23	1	53554.00	208.00	33580.00	19758.00	8.00
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	13361.00	52.00	7125.00	6178.00	6.00
................................................................................................................TAGCACCATTCGAAATCAGT............................................	20	1	3583.00	52.00	2329.00	1202.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGT..........................................	22	1	3504.00	65.00	2226.00	1213.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGA............................................................................................................	23	1	2437.00	230.00	1338.00	861.00	8.00
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	1963.00	12.00	1151.00	799.00	1.00
............................................AACTGAGATCGATTGGTGCATAGA............................................................................................................	24	1	1832.00	145.00	1051.00	632.00	4.00
............................................AACTGAGATCGATTGGTGCAT...............................................................................................................	21	1	1455.00	70.00	877.00	508.00	0.00
............................................AACTGAGATCGATTGGTGCATAG.............................................................................................................	23	1	1237.00	55.00	732.00	450.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTT.........................................	23	1	686.00	18.00	463.00	205.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGCT.........................................	23	1	501.00	0.00	122.00	379.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGCT.........................................	23	1	484.00	0.00	243.00	241.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGCT.........................................	23	1	380.00	0.00	119.00	261.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGA..........................................	22	1	374.00	0.00	242.00	132.00	0.00
................................................................................................................TAGCACCATTCGAAATCAG.............................................	19	1	368.00	1.00	213.00	154.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGCT.........................................	23	1	363.00	0.00	206.00	157.00	0.00
.............................................ACTGAGATCGATTGGTGCATAG.............................................................................................................	22	1	273.00	14.00	158.00	101.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCA.........................................	23	1	252.00	0.00	159.00	93.00	0.00
............................................AACTGAGATCGATTGGTGCATA..............................................................................................................	22	1	152.00	10.00	81.00	61.00	0.00
................................................................................................................TAGCACCATTCGAAATCCGTGCT.........................................	23	1	145.00	0.00	22.00	123.00	0.00
................................................................................................................TAGCACCATGCGAAATCAGTGCT.........................................	23	1	141.00	0.00	116.00	25.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGC..........................................	22	1	132.00	0.00	22.00	110.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGCGC..........................................	22	1	122.00	0.00	59.00	63.00	0.00
................................................................................................................TAGCACCATGCGTAATCAGTGCT.........................................	23	1	120.00	0.00	93.00	27.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTTCT.........................................	23	1	110.00	1.00	28.00	81.00	0.00
................................................................................................................TAGCACCGTTCGAAATCAGTGCT.........................................	23	1	109.00	0.00	66.00	43.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGCT.........................................	23	1	108.00	0.00	75.00	33.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGC..........................................	22	1	102.00	0.00	21.00	81.00	0.00
................................................................................................................TAGCACCATTCGAAGTCAGTGCT.........................................	23	1	101.00	0.00	62.00	39.00	0.00
................................................................................................................TAGCACCATTCGGAATCAGTGCT.........................................	23	1	97.00	0.00	50.00	47.00	0.00
................................................................................................................TAGCACAATTCGAAATCAGTGCT.........................................	23	1	97.00	0.00	70.00	27.00	0.00
................................................................................................................TAGCACCATTAGAAATCAGTGCT.........................................	23	1	92.00	1.00	67.00	24.00	0.00
................................................................................................................TAGCACCATTCGACATCAGTGCT.........................................	23	1	89.00	0.00	24.00	65.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTGC..........................................	22	1	88.00	0.00	30.00	58.00	0.00
................................................................................................................CAGCACCATTCGAAATCAGTGCT.........................................	23	1	85.00	0.00	55.00	29.00	1.00
................................................................................................................TGGCACCATTCGAAATCAGTGCT.........................................	23	1	83.00	0.00	52.00	31.00	0.00
...............................................................................................................CTAGCACCATTCGAAATCAGTGCT.........................................	24	1	82.00	0.00	59.00	23.00	0.00
................................................................................................................TAGCACCATCCGAAATCAGTGCT.........................................	23	1	82.00	0.00	62.00	20.00	0.00
................................................................................................................TAGCAACATTCGAAATCAGTGCT.........................................	23	1	81.00	0.00	57.00	24.00	0.00
............................................AACTGAGATCGATTGGTGCATAGAA...........................................................................................................	25	1	81.00	7.00	46.00	28.00	0.00
.............................................ACTGAGATCGATTGGTGCATA..............................................................................................................	21	1	79.00	3.00	38.00	38.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTTC..........................................	22	1	75.00	0.00	21.00	54.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCC.........................................	23	1	75.00	0.00	46.00	29.00	0.00
.............................................ACTGAGATCGATTGGTGCAT...............................................................................................................	20	1	75.00	4.00	40.00	31.00	0.00
................................................................................................................TAGCGCCATTCGAAATCAGTGCT.........................................	23	1	73.00	0.00	44.00	29.00	0.00
................................................................................................................TAGCACCATTCGAAACCAGTGCT.........................................	23	1	73.00	0.00	54.00	19.00	0.00
................................................................................................................TAGCACCCTTCGAAATCAGTGCT.........................................	23	1	73.00	0.00	26.00	47.00	0.00
................................................................................................................TAGCACCATTCGAAATCGGTGCT.........................................	23	1	70.00	1.00	48.00	21.00	0.00
................................................................................................................TAGCACTATTCGAAATCAGTGCT.........................................	23	1	65.00	0.00	43.00	22.00	0.00
................................................................................................................TAGCACCATTCGAAATAAGTGCT.........................................	23	1	65.00	0.00	48.00	17.00	0.00
................................................................................................................TAGCACCATTCCAAATCAGTGCT.........................................	23	1	65.00	0.00	30.00	35.00	0.00
................................................................................................................TAACACCATTCGAAATCAGTGCT.........................................	23	1	63.00	0.00	36.00	27.00	0.00
................................................................................................................TAGCACCATTCGAAATCATTGCT.........................................	23	1	61.00	1.00	35.00	25.00	0.00
............................................AACTGAGATCGATTGGTGCA................................................................................................................	20	1	60.00	1.00	36.00	23.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGCTT........................................	24	1	60.00	0.00	39.00	21.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTGCT.........................................	23	1	58.00	0.00	36.00	22.00	0.00
................................................................................................................TAGCACCATTCGAGATCAGTGCT.........................................	23	1	58.00	1.00	31.00	26.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGCT.........................................	23	1	56.00	0.00	43.00	13.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGAT.........................................	23	1	55.00	0.00	36.00	19.00	0.00
.................................................................................................................AGCACCATTCGAAATCAGTGCT.........................................	22	1	52.00	0.00	32.00	20.00	0.00
................................................................................................................TAGCACCAGTCGAAATCAGTGCT.........................................	23	1	52.00	0.00	37.00	15.00	0.00
................................................................................................................TAGCACCACTCGAAATCAGTGCT.........................................	23	1	50.00	0.00	35.00	15.00	0.00
................................................................................................................TAGCAGCATTCGAAATCAGTGCT.........................................	23	1	50.00	0.00	38.00	12.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGTGT..........................................	22	1	49.00	0.00	6.00	43.00	0.00
................................................................................................................TAGCACCATTCAAAATCAGTGCT.........................................	23	1	49.00	0.00	25.00	24.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTTCT.........................................	23	1	48.00	0.00	14.00	34.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTGTA.........................................	23	1	47.00	1.00	31.00	15.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGT............................................	20	1	46.00	0.00	24.00	22.00	0.00
................................................................................................................TAGAACCATTCGAAATCAGTGCT.........................................	23	1	45.00	0.00	28.00	17.00	0.00
................................................................................................................AAGCACCATTCGAAATCAGTGCT.........................................	23	1	43.00	0.00	32.00	11.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGGGC..........................................	22	1	43.00	0.00	30.00	13.00	0.00
................................................................................................................TAGCAGCATTCGTAATCAGTGCT.........................................	23	1	42.00	0.00	34.00	8.00	0.00
................................................................................................................TAGCACCATTCGCACTCAGTGCT.........................................	23	1	41.00	0.00	7.00	34.00	0.00
................................................................................................................TAGCACCATTCGAAAGCAGTGCT.........................................	23	1	40.00	0.00	28.00	12.00	0.00
................................................................................................................TCGCACCATTCGAAATCAGTGCT.........................................	23	1	40.00	0.00	12.00	28.00	0.00
................................................................................................................TAGCACCATTCGAAATCCGTGC..........................................	22	1	40.00	0.00	1.00	39.00	0.00
............................................AACTGAGATCGATTGGTGCATAGT............................................................................................................	24	1	39.00	3.00	26.00	10.00	0.00
................................................................................................................TAGCACCATTCTAAATCAGTGCT.........................................	23	1	39.00	0.00	23.00	16.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGAA...........................................................................................................	24	1	37.00	2.00	21.00	14.00	0.00
.............................................ACTGAGATCGATTGGTGCATAGT............................................................................................................	23	1	37.00	3.00	25.00	9.00	0.00
................................................................................................................TAGCACCATTTGAAATCAGTGCT.........................................	23	1	35.00	0.00	21.00	14.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTACT.........................................	23	1	35.00	0.00	24.00	11.00	0.00
................................................................................................................TAGCACCGTTCGTAATCAGTGCT.........................................	23	1	35.00	0.00	12.00	23.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGTCCT.........................................	23	1	34.00	0.00	28.00	6.00	0.00
................................................................................................................TAGCACCATTCGAAATCACTGC..........................................	22	1	34.00	0.00	22.00	12.00	0.00
................................................................................................................TATCACCATTCGAAATCAGTGCT.........................................	23	1	34.00	0.00	15.00	19.00	0.00
................................................................................................................TAGCACCATTCGCAATCAGT............................................	20	1	33.00	0.00	6.00	27.00	0.00
............................................AACTGAGATCGATTGGTGCATAT.............................................................................................................	23	1	33.00	0.00	19.00	14.00	0.00
................................................................................................................TAGTACCATTCGAAATCAGTGCT.........................................	23	1	33.00	0.00	24.00	9.00	0.00
................................................................................................................TAGCACCATTCGAAATCAGAGC..........................................	22	1	32.00	0.00	24.00	7.00	1.00
................................................................................................................TAGCATCATTCGAAATCAGTGCT.........................................	23	1	32.00	0.00	21.00	11.00	0.00
................................................................................................................TAGCACCATTCGACATCAGT............................................	20	1	32.00	0.00	14.00	18.00	0.00
................................................................................................................GAGCACCATTCGAAATCAGTGCT.........................................	23	1	32.00	0.00	22.00	10.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGT............................................	20	1	30.00	0.00	4.00	26.00	0.00
................................................................................................................TAGCACCATTCGAATTCAGTGCT.........................................	23	1	30.00	0.00	25.00	5.00	0.00
................................................................................................................TAGCACCATTCGAACTCAGTGT..........................................	22	1	30.00	0.00	9.00	21.00	0.00
................................................................................................................TAGCACCTTTCGAAATCAGTGCT.........................................	23	1	29.00	0.00	15.00	14.00	0.00
................................................................................................................TAGCACCATTCGAAATTAGTGCT.........................................	23	1	29.00	0.00	18.00	11.00	0.00
................................................................................................................TACCACCATTCGAAATCAGTGCT.........................................	23	1	29.00	0.00	18.00	11.00	0.00
................................................................................................................TAGCACCATTCGTAATCAGTTC..........................................	22	1	29.00	0.00	6.00	23.00	0.00
................................................................................................................TAGCACCATTCGGAATCAGTGC..........................................	22	1	28.00	0.00	8.00	20.00	0.00

droGri2

ATG------------------TAG-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGTCCAAGA--A--TAAT-----TTA----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGGCG------------CATT-	Size	Hit Count	Total Norm	V109 Male body
................................................................................................................TAGCACCATTCGAAATCAGTGC..........................................	22	1	2.00	2.00
................................................................................................................TAGxACCATTCGAAATCAGTGC..........................................	21	1	1.00	1.00
................................................................................................................TAGCACCATTCGAAATCAGTG...........................................	21	1	1.00	1.00

Generated: 04/20/2012 at 05:20:07 EDT

dme-mir-285

chr3L:11939193-11939291 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup