dme-mir-285- 12- and 20-way alignments

dme-mir-285	chr3L:11939193-11939291 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11939206-11939228
   star strand at position 11939257-11939279
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr3L:11939178-11939306 -	AC-----TTGCCCTGCCA----------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AGGAGAACCCAC-----TC----AA-TTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC
droSim1	chr3L:11307954-11308082 -	GC-----TTGCCCAGCCA----------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AGGAAAACCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC
droSec1	super_0:4127812-4127940 -	AC-----TTGCCCATCCA----------CTTCAAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AGGAAAACCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC
droYak2	chr3L:11984774-11984902 -	TC-----TTGCCCTACCA----------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AAGACAACCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC
droEre2	scaffold_4784:11929878-11930011 -	TCAGGAGCTGCACTCCCA----------CTTCGAGTCGAAGAACTGAGATCGATTGGTGCATAGATATC----AAGAAGCCCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGG--AGTGTC
droAna3	scaffold_13337:6191341-6191464 -	GC-----TAGCCAGGATA----------ATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATATC----AAGGAGATCCGA-----TC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAG--A-----
dp4	chrXR_group6:1929772-1929903 -	TC-----TTACAATTACA----------GTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AAGAGGACTCGC-----TA----ATTTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGAAAGTGTT
droPer1	Unknown	----------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180949:5768873-5769006 +	AC--------------CACATACAAATTGTTCGAATTAAAGAACTGAGATCGATTGGTGCATAGATAAT----ATGCGAATTCTATCATTTGATTTCA-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAA--G-----
droVir3	scaffold_13049:21101427-21101556 +	AT-----GCACC-AGCCA----------GTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGCC--CAAAAAGTAAT-----TC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGG--CGCATC
droMoj3	scaffold_6680:15475383-15475514 +	AA-----ACACCACACCA----------GTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATAACGCC-CAAAAAGTCATT-----TT----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGG--TGTATG
droGri2	scaffold_15110:22570097-22570226 -	AT-----GTAGC-AGCCA----------GTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGTCCAAGA--ATA-AT----TTA----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGG--CGCATT

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr3L:11939178-11939306 -	NA	ACT------------------TGCCCTGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAGAA--CCCA-----CTC----AA-TTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droSim1	chr3L:11307954-11308082 -	1	GCT------------------TGCCCAGCCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droSec1	super_0:4127812-4127940 -	1	ACT------------------TGCCCATCCACTTCAAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAGGAAAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droYak2	chr3L:11984774-11984902 -	1	TCT------------------TGCCCTACCACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGACAA--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGAAG------------TGTC-
droEre2	scaffold_4784:11929878-11930011 -	1	TCAGGAGC-------------TGCACTCCCACTTCGAGTCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAAGC--CCCA-----CTC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGGAG------------TGTC-
droEug1	scf7180000409466:4030533-4030653 -	1	TC----------------------------ACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA--CATA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGCCT
droBia1	scf7180000302428:4183390-4183516 -	1	ACT----------------------CTTCCCCTTCGAATCGAAGAACTGAGATCGACTGGTGCATAGATAT----CAGGGAAA--GCCA-----CCC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAGCAATCAGCAGAG------------TGTCT
droTak1	scf7180000415741:178001-178124 +	1	GCT------------------CGC-------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAAA-ACCCA-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTCT
droEle1	scf7180000491193:3850551-3850671 -	2	CT----------------------------TCTTCGAATCGAAGAACTGAGCTCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGTCT
droRho1	scf7180000780179:29930-30060 +	2	ATCCACC-----------------CAGCACACTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGGAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAATCAATCAGCAGAG------------TGCCT
droFic1	scf7180000454113:2711074-2711205 +	1	ATCCACA-----------------CAGAAGCCTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATAC--CAAGGAAA--CCCG-----CTC----AT-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCAGAG------------TGTC-
droKik1	scf7180000302391:881259-881381 +	1	A-------------------------GGACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGACACCCG-----CTT----AT-TT-AACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCAATCAGCAGAG------------TGTC-
droAna3	scaffold_13337:6191341-6191461 -	1	GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAGA------------------
droBip1	scf7180000396419:132630-132750 -	2	GC----------------------CAGGATAATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGGAGA--TCCG-----ATC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACCAA------------------
dp4	chrXR_group6:1929779-1929903 -	2	TCT------------------TACAATTACAGTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATAT----CAAGAGGA--CTCG-----CTA----ATTTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGA------------------
droPer1	Unknown	NA	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil1	scaffold_180949:5768880-5769006 +	3	ACA------------------------AATTGTTCGAATTAAAGAACTGAGATCGATTGGTGCATAGATAA----TATGCGAA--TTCTATCATTTGATTTCA-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAAG------------------
droVir3	scaffold_13049:21101427-21101556 +	1	ATG------------------CAC-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGC--CCAAAAA--GTAA-----TTC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGGCG------------CATC-
droMoj3	scaffold_6680:15475365-15475526 +	1	ACACACCCAGCAGACATCAAACACCACACCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATAACGCCCAAA-AAG--TCAT-----TTT----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGGTGTATGGGAACAAGTGTC-
droGri2	scaffold_15110:22570097-22570226 -	1	ATG------------------TAG-CAGCCAGTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGTCCAAGA--A--TAAT-----TTA----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGGCG------------CATT-

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

AC-----TTGCCCTGCCA----------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AGGAGAACCCAC-----TC----AA-TTTAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC

Size

Hit Count

Total Norm

droSim1

GC-----TTGCCCAGCCA----------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AGGAAAACCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	50406.00	2.00	50072.00	169.00	163.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	10235.00	0.00	10198.00	18.00	19.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	7046.00	0.00	7008.00	22.00	16.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	5581.00	0.00	5543.00	18.00	20.00
..........................................ACTGAGATCGATTGGTGCATAGG...............................................................................................	23	1	5087.00	0.00	5044.00	14.00	29.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	2079.00	0.00	2068.00	6.00	5.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	1941.00	4.00	1928.00	2.00	7.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	1875.00	0.00	1861.00	4.00	10.00
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	1155.00	3.00	1147.00	1.00	4.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	969.00	0.00	960.00	2.00	7.00
..........................................ACTGAGATCGATTGGTGCA...................................................................................................	19	1	871.00	0.00	866.00	3.00	2.00
..........................................ACTGAGATCGATTGGTGCATAGT...............................................................................................	23	1	817.00	0.00	813.00	3.00	1.00
..........................................ACTGAGATCGATTGGTGCATAGAA..............................................................................................	24	1	746.00	0.00	745.00	0.00	1.00
..........................................ACTGAGATCGATTGGTGCAC..................................................................................................	20	1	554.00	0.00	551.00	3.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGC...............................................................................................	23	1	498.00	0.00	497.00	1.00	0.00
...........................................CTGAGATCGATTGGTGCATAGA...............................................................................................	22	1	460.00	0.00	458.00	1.00	1.00
.........................................AACTGAGATCGATTGGTGCAC..................................................................................................	21	1	370.00	0.00	370.00	0.00	0.00
..........................................ACTGAGATCGATTGGGGCATAGA...............................................................................................	23	1	363.00	0.00	359.00	3.00	1.00
..........................................ACTGAGATCGATTGGTGCATAGAAA.............................................................................................	25	1	355.00	0.00	352.00	0.00	3.00
..........................................ACTGAGATCGATTGGTGCATT.................................................................................................	21	1	352.00	0.00	352.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATA.................................................................................................	22	1	342.00	0.00	336.00	2.00	4.00
.........................................AACTGAGATCGATTGGTGCATT.................................................................................................	22	1	322.00	0.00	321.00	0.00	1.00
...........................................CTGAGATCGATTGGTGCATAG................................................................................................	21	1	292.00	0.00	286.00	5.00	1.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	210.00	2.00	207.00	0.00	1.00
.........................................AACTGAGATCGATTGGTGCATAGG...............................................................................................	24	1	203.00	0.00	202.00	1.00	0.00
.........................................AACTGAGATCGATTGGTGCA...................................................................................................	20	1	165.00	0.00	165.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAT..............................................................................................	24	1	153.00	0.00	153.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAAAA............................................................................................	26	1	146.00	0.00	143.00	3.00	0.00
..........................................ACTGAGATCGATTGGTGCATAA................................................................................................	22	1	142.00	0.00	142.00	0.00	0.00
..........................................ACTGAGATCGATTGGGGCAT..................................................................................................	20	1	140.00	0.00	139.00	0.00	1.00
..........................................ACTGAGATCGATTGGTTCATAGA...............................................................................................	23	1	123.00	0.00	123.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATGG................................................................................................	22	1	116.00	0.00	115.00	0.00	1.00
..........................................ACTGAGATCGATTxGTGCATAGA...............................................................................................	22	1	111.00	0.00	111.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATTT................................................................................................	23	1	109.00	0.00	109.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCAG..................................................................................................	20	1	95.00	0.00	95.00	0.00	0.00
..........................................ACTGAGATCGATTGGTCCATAGA...............................................................................................	23	1	89.00	0.00	89.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATAGT...............................................................................................	24	1	86.00	0.00	86.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAT................................................................................................	22	1	84.00	0.00	84.00	0.00	0.00
..........................................ACTGAGATCGATTTGTGCATAGA...............................................................................................	23	1	83.00	0.00	83.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	76.00	1.00	75.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	74.00	0.00	74.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGC....................................................................................................	18	1	71.00	0.00	71.00	0.00	0.00
..........................................ACTGAGATCGATTGGAGCATAGA...............................................................................................	23	1	71.00	0.00	71.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCAG..................................................................................................	21	1	69.00	0.00	69.00	0.00	0.00
.........................................AACTGAGATCGATTGGGGCAT..................................................................................................	21	1	68.00	0.00	68.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAAA...............................................................................................	23	1	66.00	0.00	66.00	0.00	0.00
..........................................ACTGAGATCGATTGGCGCATAGA...............................................................................................	23	1	66.00	0.00	66.00	0.00	0.00
..........................................GCTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	65.00	0.00	65.00	0.00	0.00
..........................................ACTGAGATCGATTGGGGCATAGG...............................................................................................	23	1	61.00	0.00	61.00	0.00	0.00
..........................................ACTGAGGTCGATTGGTGCATAGA...............................................................................................	23	1	61.00	0.00	59.00	1.00	1.00
..........................................ACTGAGATCGATTGTTGCATAGA...............................................................................................	23	1	58.00	0.00	58.00	0.00	0.00
...........................................CTGAGATCGATTGGTGCATAGG...............................................................................................	22	1	55.00	0.00	55.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATAT................................................................................................	23	1	55.00	0.00	55.00	0.00	0.00
..........................................ACTGAGATCGATTGGGGCATAG................................................................................................	22	1	53.00	0.00	52.00	1.00	0.00
..............................................................................................................CACCATTCGAAATCAGTGCT..............................	20	1	50.00	0.00	49.00	1.00	0.00
..........................................ACTGAGATCGATTGGTGCATTT................................................................................................	22	1	49.00	0.00	49.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGC....................................................................................................	19	1	47.00	0.00	44.00	3.00	0.00
..........................................ACTGGGATCGATTGGTGCATAGA...............................................................................................	23	1	43.00	0.00	43.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	41.00	0.00	41.00	0.00	0.00
..........................................ACTGAGATCGATTCGTGCATAGA...............................................................................................	23	1	41.00	0.00	41.00	0.00	0.00
...........................................CTGAGATCGATTGGTGCATAGT...............................................................................................	22	1	41.00	0.00	41.00	0.00	0.00
..........................................ACTGAGATCGATTGGTxCATAGA...............................................................................................	22	1	39.00	0.00	39.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCAA..................................................................................................	20	1	39.00	0.00	38.00	0.00	1.00
.........................................AACTGAGATCGATTGGTGCATAGAA..............................................................................................	25	1	37.00	0.00	37.00	0.00	0.00
...........................................CTGAGATCGATTGGTGCAT..................................................................................................	19	1	37.00	0.00	37.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATAA................................................................................................	23	1	36.00	0.00	35.00	1.00	0.00
..........................................ACTGAGATCGATTGGTGCG...................................................................................................	19	1	35.00	0.00	34.00	0.00	1.00
..........................................ACTGAGATCGATTGTTGCATAG................................................................................................	22	1	34.00	0.00	33.00	0.00	1.00
.........................................AACTGAGATCGATTGGTGCAA..................................................................................................	21	1	32.00	0.00	32.00	0.00	0.00
..........................................ACTGAGATCGATTGGTACATAGA...............................................................................................	23	1	31.00	0.00	31.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	29.00	0.00	29.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGG...............................	22	1	29.00	0.00	29.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGT....................................................................................................	18	1	28.00	0.00	28.00	0.00	0.00
...........................................CTGAGATCGATTGGTGCA...................................................................................................	18	1	28.00	0.00	28.00	0.00	0.00
..........................................ACTGAGATCGATTxGTGCATAG................................................................................................	21	1	28.00	0.00	26.00	0.00	2.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	27.00	0.00	27.00	0.00	0.00
..........................................ACTGAGATCGATTGGGGCATA.................................................................................................	21	1	27.00	0.00	27.00	0.00	0.00
..........................................ACTGAGATCGATTTGTGCAT..................................................................................................	20	1	26.00	0.00	26.00	0.00	0.00
..........................................ACTGAGATCGATTGGAGCAT..................................................................................................	20	1	25.00	0.00	24.00	0.00	1.00
.........................................AACTGAGATCGATTGGTGCATAGC...............................................................................................	24	1	25.00	0.00	25.00	0.00	0.00
..........................................ACTGAGATCGATTGGTTCATAG................................................................................................	22	1	23.00	0.00	23.00	0.00	0.00
..........................................ACTGAGATCGATTTGTGCATAG................................................................................................	22	1	23.00	0.00	23.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCACAGA...............................................................................................	23	1	22.00	0.00	22.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAC................................................................................................	22	1	22.00	0.00	22.00	0.00	0.00
..............................................................................................................CACCATTCGAAATCAGTG................................	18	1	21.00	0.00	21.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATAGAT..............................................................................................	25	1	20.00	0.00	19.00	0.00	1.00
..........................................ATTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	20.00	0.00	20.00	0.00	0.00
..........................................ACTGAGGTCGATTGGTGCAT..................................................................................................	20	1	19.00	0.00	19.00	0.00	0.00
.................................................................TATC----AGGAAAACCCAC-----TC----AA-TTCAACTC.....................................................	28	1	19.00	0.00	18.00	0.00	1.00
..........................................ACTGAGATCGATTxGTGCAT..................................................................................................	19	1	19.00	0.00	19.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATGG................................................................................................	23	1	19.00	0.00	19.00	0.00	0.00
..........................................ACTGAGATTGATTGGTGCATAGA...............................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGTATAGA...............................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCGTAGA...............................................................................................	23	1	18.00	0.00	17.00	0.00	1.00
..........................................ACTGAGATCGATTGGTGCATAGATA.............................................................................................	25	1	18.00	0.00	18.00	0.00	0.00
..........................................ACTGAGATCGGTTGGTGCATAGA...............................................................................................	23	1	18.00	0.00	18.00	0.00	0.00
..........................................ACCGAGATCGATTGGTGCATAGA...............................................................................................	23	1	17.00	0.00	17.00	0.00	0.00
............................................TGAGATCGATTGGTGCAT..................................................................................................	18	1	17.00	0.00	17.00	0.00	0.00
..........................................ACTGAGATCGATTGGCGCAT..................................................................................................	20	1	17.00	0.00	17.00	0.00	0.00
............................................TGAGATCGATTGGTGCATAGA...............................................................................................	21	1	17.00	0.00	17.00	0.00	0.00
...........................................CTGAGATCGATTGGTGCATAGAT..............................................................................................	23	1	17.00	0.00	17.00	0.00	0.00

droSec1

AC-----TTGCCCATCCA----------CTTCAAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AGGAAAACCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	36332.00	26.00	48.00	36258.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	30903.00	66.00	37.00	30800.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	14187.00	33.00	29.00	14125.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	7044.00	45.00	8.00	6991.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	3496.00	25.00	2.00	3469.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	2365.00	2.00	3.00	2360.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	2153.00	0.00	1.00	2152.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	1571.00	52.00	8.00	1511.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	904.00	4.00	2.00	898.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	436.00	0.00	0.00	436.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	357.00	5.00	0.00	352.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	253.00	5.00	0.00	248.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	191.00	5.00	0.00	186.00
...........................................................................................................TAGCACCATTCGAAATCA...................................	18	1	148.00	0.00	0.00	148.00
...........................................................................................................TAGCACCATTCGAAATCAGTT................................	21	1	135.00	2.00	0.00	133.00
..............................................................................................................CACCATTCGAAATCAGTG................................	18	1	131.00	0.00	0.00	131.00
...........................................................................................................TAGCACCATTCGAAATCAGA.................................	20	1	115.00	0.00	0.00	115.00
...........................................................................................................TAGCACCATTCGAAATCAGTA................................	21	1	115.00	0.00	0.00	115.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAA..............................	23	1	109.00	0.00	0.00	109.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTA..............................	23	1	109.00	0.00	0.00	109.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCTT.............................	24	1	85.00	0.00	0.00	85.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	85.00	1.00	0.00	84.00
...........................................................................................................TATCACCATTCGAAATCAGTG................................	21	1	83.00	1.00	0.00	82.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	79.00	0.00	0.00	79.00
...........................................................................................................TAGCACCATTCGAAATCAGCG................................	21	1	77.00	0.00	0.00	77.00
...........................................................................................................TAGCACAATTCGAAATCAGTG................................	21	1	73.00	0.00	0.00	73.00
...........................................................................................................TAGCACAATTCGAAATCAGTGCT..............................	23	1	71.00	0.00	0.00	71.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	70.00	0.00	1.00	69.00
...........................................................................................................TAGCACCATTCGAAATCAGCGCT..............................	23	1	70.00	0.00	0.00	70.00
..........................................................................................................CTAGCACCATTCGAAATCAGTG................................	22	1	68.00	0.00	0.00	68.00
...........................................................................................................TAGCAACATTCGAAATCAGTG................................	21	1	61.00	0.00	0.00	61.00
...........................................................................................................TAGCACCATTCGAAATCAATG................................	21	1	61.00	0.00	0.00	61.00
...........................................................................................................TATCACCATTCGAAATCAGTGC...............................	22	1	59.00	1.00	0.00	58.00
...........................................................................................................TATCACCATTCGAAATCAGTGCT..............................	23	1	55.00	0.00	0.00	55.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	51.00	0.00	0.00	51.00
...........................................................................................................TAGAACCATTCGAAATCAGTGCT..............................	23	1	50.00	0.00	0.00	50.00
...........................................................................................................TAGCACCATTCGAAATCAGTGG...............................	22	1	49.00	0.00	0.00	49.00
...........................................................................................................TAGCACCATTCGAAATCAGAGCT..............................	23	1	47.00	0.00	0.00	47.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	45.00	0.00	0.00	45.00
...........................................................................................................TACCACCATTCGAAATCAGTG................................	21	1	45.00	0.00	0.00	45.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGCT..............................	24	1	44.00	0.00	0.00	44.00
...........................................................................................................TAGAACCATTCGAAATCAGTG................................	21	1	43.00	0.00	0.00	43.00
...........................................................................................................TAGCACCATTCGAAATCAGAG................................	21	1	42.00	0.00	0.00	42.00
...........................................................................................................TAGCACCATTCGAAATCATTG................................	21	1	41.00	0.00	0.00	41.00
...........................................................................................................TAGCACCATACGAAATCAGTG................................	21	1	41.00	0.00	0.00	41.00
...........................................................................................................TAGCACCATTCGAAATCAGCGC...............................	22	1	40.00	0.00	0.00	40.00
..........................................ACTGAGATCGATTGGTGCA...................................................................................................	19	1	40.00	0.00	0.00	40.00
...........................................................................................................TAGCACCATTCGAAGTCAGTG................................	21	1	39.00	0.00	0.00	39.00
...........................................................................................................TACCACCATTCGAAATCAGTGC...............................	22	1	37.00	0.00	0.00	37.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAT..............................	23	1	36.00	0.00	0.00	36.00
...........................................................................................................TAGCACCATTCGAAATCAATGCT..............................	23	1	36.00	2.00	0.00	34.00
...........................................................................................................TAGCACCATTCGAAATCACTG................................	21	1	36.00	1.00	0.00	35.00
............................................................................................................AGCACCATTCGAAATCAGTG................................	20	1	36.00	0.00	0.00	36.00
..........................................ACTGAGATCGATTGGTGCATAGAA..............................................................................................	24	1	36.00	1.00	0.00	35.00
...........................................................................................................TAGCACCATTCAAAATCAGTGCT..............................	23	1	35.00	0.00	0.00	35.00
...........................................................................................................TAGCACCATTCAAAATCAGTG................................	21	1	35.00	0.00	0.00	35.00
...........................................................................................................TAGCACCATTCGAAATCAGGGCT..............................	23	1	34.00	0.00	0.00	34.00
...........................................................................................................TAGCACAATTCGAAATCAGTGC...............................	22	1	34.00	0.00	0.00	34.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGCT..............................	23	1	33.00	0.00	0.00	33.00
...........................................................................................................TAGCACCATTCGAAATCATTGCT..............................	23	1	33.00	1.00	0.00	32.00
...........................................................................................................CAGCACCATTCGAAATCAGTG................................	21	1	33.00	0.00	0.00	33.00
...........................................................................................................TAGCACCATTCGAAATCAA..................................	19	1	33.00	0.00	0.00	33.00
...........................................................................................................TAGCACCATTCGAAATCAGTC................................	21	1	33.00	0.00	0.00	33.00
...........................................................................................................TGGCACCATTCGAAATCAGTG................................	21	1	32.00	0.00	0.00	32.00
...........................................................................................................TAGCACCACTCGAAATCAGTG................................	21	1	32.00	0.00	0.00	32.00
...........................................................................................................TAGCACCATACGAAATCAGTGCT..............................	23	1	31.00	0.00	0.00	31.00
...........................................................................................................AAGCACCATTCGAAATCAGTG................................	21	1	30.00	0.00	0.00	30.00
...........................................................................................................TAGCACCATTCGGAATCAGTG................................	21	1	30.00	0.00	0.00	30.00
...........................................................................................................TAGCACCATTCGAAATCAGTTCT..............................	23	1	30.00	1.00	0.00	29.00
...........................................................................................................TAGCACTATTCGAAATCAGTG................................	21	1	29.00	0.00	1.00	28.00
...........................................................................................................TAGCACCATTCGAAATCATTGC...............................	22	1	29.00	0.00	1.00	28.00
............................................................................................................AGCACCATTCGAAATCAGTGCT..............................	22	1	29.00	0.00	0.00	29.00
...........................................................................................................TACCACCATTCGAAATCAGTGCT..............................	23	1	28.00	1.00	0.00	27.00
...........................................................................................................TAGCACCATCCGAAATCAGTG................................	21	1	28.00	0.00	0.00	28.00
...........................................................................................................TAGCACCATTCGAAATCACTGCT..............................	23	1	28.00	1.00	0.00	27.00
...........................................................................................................TAGCACCACTCGAAATCAGTGCT..............................	23	1	28.00	0.00	1.00	27.00
...........................................................................................................TAGCACCATCCGAAATCAGTGCT..............................	23	1	28.00	1.00	0.00	27.00
...........................................................................................................TAGCACCATTTGAAATCAGTG................................	21	1	28.00	0.00	0.00	28.00
...........................................................................................................TAGCACCATTCGAGATCAGTGCT..............................	23	1	28.00	0.00	0.00	28.00
...........................................................................................................TAGCGCCATTCGAAATCAGTGCT..............................	23	1	27.00	0.00	0.00	27.00
...........................................................................................................TAGCGCCATTCGAAATCAGTG................................	21	1	27.00	0.00	0.00	27.00
...........................................................................................................TAGCACCATTCGAAATTAGTGCT..............................	23	1	27.00	0.00	0.00	27.00
...........................................................................................................TAGCACCATTCGAAATCAGTTT...............................	22	1	26.00	1.00	0.00	25.00
...........................................................................................................TAGCACCATTCGAAATCAATGC...............................	22	1	26.00	0.00	0.00	26.00
...........................................................................................................TAGCACCATTCGAACTCAGTG................................	21	1	26.00	0.00	0.00	26.00
...........................................................................................................GAGCACCATTCGAAATCAGTG................................	21	1	26.00	0.00	0.00	26.00
...........................................................................................................TAGCACCATTCTAAATCAGTG................................	21	1	24.00	0.00	0.00	24.00
...........................................................................................................TAGCACCATTCGAAATCGGTGCT..............................	23	1	24.00	0.00	0.00	24.00
...........................................................................................................TAGCACCGTTCGAAATCAGTG................................	21	1	24.00	0.00	0.00	24.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	24.00	0.00	0.00	24.00
...........................................................................................................TAGCACCATTCGCAATCAGTG................................	21	1	24.00	0.00	0.00	24.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGC...............................	23	1	24.00	0.00	0.00	24.00
...........................................................................................................TAGCACCATTCGAAATCGGTG................................	21	1	23.00	0.00	0.00	23.00
...........................................................................................................CAGCACCATTCGAAATCAGTGCT..............................	23	1	23.00	0.00	0.00	23.00
...........................................................................................................TAGCACCGTTCGAAATCAGTGCT..............................	23	1	23.00	0.00	0.00	23.00
...........................................................................................................TAGCCCCATTCGAAATCAGTG................................	21	1	22.00	0.00	0.00	22.00
...........................................................................................................TAGCACCATTCGAGATCAGTG................................	21	1	22.00	0.00	0.00	22.00
...........................................................................................................TAGCACCACTCGAAATCAGTGC...............................	22	1	22.00	0.00	0.00	22.00
............................................TGAGATCGATTGGTGCATAGA...............................................................................................	21	1	22.00	1.00	0.00	21.00
...........................................................................................................TGGCACCATTCGAAATCAGTGCT..............................	23	1	22.00	0.00	0.00	22.00
...........................................................................................................TAGCATCATTCGAAATCAGTG................................	21	1	22.00	0.00	0.00	22.00

droYak2

TC-----TTGCCCTACCA----------CTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AAGACAACCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGA--AGTGTC	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	53114.00	0.00	15009.00	74.00	37994.00	37.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	20070.00	1.00	7002.00	40.00	11870.00	1157.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	15953.00	1.00	204.00	36.00	464.00	15248.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	6187.00	0.00	1745.00	58.00	4376.00	8.00
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	3358.00	0.00	1027.00	9.00	2137.00	185.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	3134.00	0.00	45.00	15.00	85.00	2989.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	2962.00	0.00	67.00	15.00	136.00	2744.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	2824.00	1.00	783.00	42.00	1986.00	12.00
..........................................ACTGAGATCGATTGGTGCATAGG...............................................................................................	23	1	1757.00	0.00	0.00	0.00	1.00	1756.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	1407.00	0.00	354.00	15.00	1038.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGCT..............................	23	1	819.00	0.00	63.00	0.00	756.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGCT..............................	23	1	755.00	0.00	118.00	0.00	637.00	0.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	659.00	0.00	9.00	2.00	26.00	622.00
..........................................ACTGAGATCGATTGGTGCATAGT...............................................................................................	23	1	503.00	0.00	5.00	1.00	12.00	485.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	500.00	0.00	161.00	0.00	339.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGCT..............................	23	1	493.00	0.00	111.00	0.00	382.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	445.00	0.00	121.00	2.00	319.00	3.00
...........................................................................................................TAGCACCATTCGAAATCAGCGCT..............................	23	1	414.00	0.00	67.00	0.00	347.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAA..............................................................................................	24	1	294.00	0.00	1.00	2.00	7.00	284.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	290.00	0.00	1.00	1.00	4.00	284.00
..........................................ACTGAGATCGATTGGTGCA...................................................................................................	19	1	264.00	0.00	4.00	0.00	6.00	254.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	261.00	0.00	75.00	0.00	179.00	7.00
...........................................................................................................TAGCACCATTCGAACTCAGTGC...............................	22	1	250.00	0.00	30.00	0.00	220.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGC...............................	22	1	214.00	0.00	53.00	0.00	161.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGC...............................	22	1	211.00	0.00	40.00	1.00	168.00	2.00
..........................................ACTGAGATCGATTGGTGCAC..................................................................................................	20	1	182.00	0.00	0.00	0.00	1.00	181.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	175.00	0.00	52.00	0.00	114.00	9.00
...........................................................................................................TAGCACCGTTCGAAATCAGTGCT..............................	23	1	172.00	0.00	36.00	0.00	136.00	0.00
..........................................ACTGAGATCGATTGGGGCATAGA...............................................................................................	23	1	170.00	0.00	0.00	0.00	2.00	168.00
...........................................................................................................TAGCACCATGCGAAATCAGTGCT..............................	23	1	162.00	0.00	23.00	0.00	139.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTTCT..............................	23	1	152.00	0.00	39.00	0.00	113.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGC...............................	22	1	141.00	0.00	37.00	0.00	103.00	1.00
...........................................................................................................TAGCACCATTCGAAATCCGTGCT..............................	23	1	136.00	0.00	22.00	0.00	114.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTGCT..............................	23	1	129.00	0.00	34.00	0.00	95.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGCT..............................	23	1	124.00	0.00	17.00	0.00	107.00	0.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	124.00	1.00	4.00	0.00	5.00	114.00
..........................................ACTGAGATCGATTGGTGCATT.................................................................................................	21	1	120.00	0.00	0.00	0.00	1.00	119.00
...........................................................................................................TAGCACCCTTCGAAATCAGTGCT..............................	23	1	112.00	0.00	26.00	1.00	85.00	0.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGCT..............................	23	1	111.00	0.00	16.00	0.00	95.00	0.00
...........................................................................................................TAGCACCATTCGACATCAGTGCT..............................	23	1	110.00	0.00	17.00	0.00	93.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTGCT..............................	23	1	106.00	0.00	23.00	0.00	83.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTTC...............................	22	1	106.00	0.00	51.00	0.00	55.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTGCT..............................	23	1	106.00	0.00	8.00	0.00	98.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCTT.............................	24	1	105.00	0.00	22.00	1.00	82.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGT...............................	22	1	101.00	0.00	9.00	0.00	92.00	0.00
...........................................................................................................TAGCGCCATTCGAAATCAGTGCT..............................	23	1	97.00	0.00	20.00	0.00	77.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTGCT..............................	23	1	95.00	0.00	19.00	0.00	76.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGT...............................	22	1	94.00	0.00	17.00	0.00	77.00	0.00
...........................................................................................................TAGCACCAGTCGAAATCAGTGCT..............................	23	1	91.00	0.00	7.00	0.00	84.00	0.00
...........................................................................................................TGGCACCATTCGAAATCAGTGCT..............................	23	1	90.00	0.00	26.00	0.00	64.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGT...............................	22	1	89.00	0.00	19.00	0.00	70.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTGCT..............................	23	1	86.00	0.00	19.00	0.00	67.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGCT..............................	23	1	84.00	0.00	26.00	0.00	58.00	0.00
...........................................CTGAGATCGATTGGTGCATAGA...............................................................................................	22	1	84.00	0.00	2.00	0.00	5.00	77.00
...........................................................................................................TAGCACCATGCGTAATCAGTGCT..............................	23	1	79.00	0.00	15.00	0.00	64.00	0.00
...........................................................................................................TAGCACCATTCGAAATCACTGCT..............................	23	1	78.00	0.00	7.00	0.00	71.00	0.00
...........................................................................................................TAGCACCATCCGAAATCAGTGCT..............................	23	1	78.00	0.00	19.00	0.00	59.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGC...............................	22	1	78.00	0.00	15.00	0.00	62.00	1.00
..........................................ACTGAGATCGATTGGTGCATAGAT..............................................................................................	24	1	77.00	0.00	0.00	0.00	2.00	75.00
...........................................................................................................TAGCACCACTCGAAATCAGTGCT..............................	23	1	74.00	0.00	19.00	0.00	55.00	0.00
...........................................................................................................TAACACCATTCGAAATCAGTGCT..............................	23	1	73.00	0.00	18.00	0.00	55.00	0.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGCT..............................	24	1	69.00	0.00	23.00	0.00	46.00	0.00
...........................................................................................................TAGCACCATTCGAAATCGGTGCT..............................	23	1	69.00	0.00	15.00	0.00	54.00	0.00
...........................................................................................................TAGCACCATTCCAAATCAGTGCT..............................	23	1	69.00	0.00	21.00	0.00	48.00	0.00
...........................................................................................................TAGCACCGTTCGAAATCAGTGC...............................	22	1	68.00	0.00	14.00	0.00	54.00	0.00
...........................................................................................................TAGCACCATTCGCACTCAGTGCT..............................	23	1	68.00	0.00	8.00	0.00	60.00	0.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	68.00	0.00	14.00	0.00	54.00	0.00
...........................................................................................................AAGCACCATTCGAAATCAGTGCT..............................	23	1	68.00	0.00	16.00	0.00	52.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	68.00	0.00	12.00	0.00	56.00	0.00
..........................................ACTGAGATCGATTGGTGCATGG................................................................................................	22	1	67.00	0.00	0.00	0.00	0.00	67.00
...........................................................................................................TAGCACCATTCGTAATCAGTTCT..............................	23	1	67.00	0.00	24.00	0.00	43.00	0.00
...........................................................................................................TAGCACCATTCGAAAGCAGTGCT..............................	23	1	65.00	0.00	11.00	0.00	54.00	0.00
...........................................................................................................TAGCACCATTCGAAACCAGTGCT..............................	23	1	64.00	0.00	14.00	0.00	50.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCG..............................	23	1	63.00	0.00	21.00	0.00	41.00	1.00
...........................................................................................................TAGCACCGTTCGTAATCAGTGCT..............................	23	1	62.00	0.00	17.00	0.00	45.00	0.00
..........................................ACTGAGATCGATTGGGGCAT..................................................................................................	20	1	59.00	0.00	0.00	1.00	0.00	58.00
...........................................................................................................TAGCACCATTCGAAATCAGTCCT..............................	23	1	58.00	0.00	4.00	1.00	53.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGCT..............................	23	1	57.00	0.00	13.00	1.00	40.00	3.00
...........................................................................................................TAGCACCATTCAAAATCAGTGCT..............................	23	1	56.00	0.00	25.00	0.00	31.00	0.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	56.00	0.00	1.00	0.00	7.00	48.00
...........................................................................................................TAGCACTATTCGAAATCAGTGCT..............................	23	1	55.00	0.00	14.00	0.00	41.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTG................................	21	1	55.00	0.00	8.00	0.00	47.00	0.00
...........................................................................................................TAGCACCATTCTAAATCAGTGCT..............................	23	1	54.00	0.00	9.00	0.00	45.00	0.00
...........................................................................................................TAGCAGCATTCGAAATCAGTGCT..............................	23	1	54.00	0.00	6.00	0.00	48.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAT..............................	23	1	53.00	0.00	16.00	0.00	37.00	0.00
...........................................................................................................TAGCACCATTCGAAATCACTGC...............................	22	1	52.00	0.00	6.00	0.00	46.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGC...............................................................................................	23	1	49.00	0.00	0.00	0.00	10.00	39.00
............................................................................................................AGCACCATTCGAAATCAGTGCT..............................	22	1	49.00	0.00	12.00	0.00	37.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTA..............................	23	1	49.00	0.00	13.00	0.00	36.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTGC...............................	22	1	48.00	0.00	8.00	0.00	40.00	0.00
...........................................................................................................TCGCACCATTCGAAATCAGTGCT..............................	23	1	48.00	0.00	7.00	0.00	41.00	0.00
..........................................ACTGAGATCGATTGGGGCATAG................................................................................................	22	1	47.00	0.00	0.00	0.00	0.00	47.00
...........................................................................................................TAGCACCATTCGAACTCAGT.................................	20	1	46.00	0.00	3.00	0.00	43.00	0.00
...........................................................................................................TAGCACCATTCGAGATCAGTGCT..............................	23	1	45.00	0.00	16.00	0.00	29.00	0.00
..........................................ACTGAGATCGATTGGTGCAG..................................................................................................	20	1	44.00	0.00	0.00	0.00	1.00	43.00
...........................................................................................................TAGCACCATTCGAATTCAGTGCT..............................	23	1	44.00	0.00	0.00	0.00	44.00	0.00
............................................................................................................AGCACCATTCGAAATCAGTGC...............................	21	1	44.00	0.00	9.00	0.00	28.00	7.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGC...............................	23	1	43.00	0.00	6.00	0.00	35.00	2.00
...........................................................................................................TAGCACCATTCGAAATCAGAGC...............................	22	1	42.00	0.00	10.00	0.00	29.00	3.00
...........................................................................................................TAGCACCATTCGCAATCAGTG................................	21	1	42.00	0.00	12.00	0.00	30.00	0.00
..........................................ACTGAGATCGATTGGTGCATTT................................................................................................	22	1	41.00	0.00	0.00	0.00	3.00	38.00

droEre2

TCAGGAGCTGCACTCCCA----------CTTCGAGTCGAAGAACTGAGATCGATTGGTGCATAGATATC----AAGAAGCCCCAC-----TC----AA-TTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAAACAATCAGCGG--AGTGTC	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	128006.00	0.00	3904.00	2.00	124100.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	95242.00	2.00	12646.00	2.00	82592.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	60898.00	7.00	10931.00	2.00	49958.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	10823.00	0.00	2702.00	0.00	8121.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	9078.00	1.00	1083.00	1.00	7993.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	4594.00	0.00	339.00	1.00	4254.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	2943.00	0.00	475.00	0.00	2468.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	2310.00	0.00	358.00	0.00	1952.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	2269.00	0.00	323.00	0.00	1946.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	1793.00	0.00	255.00	0.00	1538.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	1608.00	0.00	186.00	0.00	1422.00
...........................................................................................................TAGCACAATTCGAAATCAGTG................................	21	1	1213.00	0.00	3.00	0.00	1210.00
...........................................................................................................TATCACCATTCGAAATCAGTG................................	21	1	991.00	0.00	1.00	0.00	990.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	855.00	0.00	54.00	1.00	800.00
...........................................................................................................TAGCACCATTCTAAATCAGTG................................	21	1	747.00	0.00	4.00	0.00	743.00
...........................................................................................................TAGCACAATTCGAAATCAGTGC...............................	22	1	720.00	0.00	20.00	0.00	700.00
...........................................................................................................TATCACCATTCGAAATCAGTGC...............................	22	1	680.00	0.00	9.00	0.00	671.00
...........................................................................................................TAGCACCATTAGAAATCAGTG................................	21	1	639.00	0.00	3.00	0.00	636.00
...........................................................................................................TAGCACCATTCGAAATAAGTG................................	21	1	608.00	0.00	3.00	0.00	605.00
..............................................................................................................CACCATTCGAAATCAGTG................................	18	1	550.00	0.00	5.00	0.00	545.00
...........................................................................................................TAGCACCATTCTAAATCAGTGC...............................	22	1	517.00	0.00	15.00	0.00	502.00
...........................................................................................................TAGCACCATTCGAAATCAGTTC...............................	22	1	498.00	0.00	59.00	1.00	438.00
...........................................................................................................TAGAACCATTCGAAATCAGTG................................	21	1	497.00	0.00	1.00	0.00	496.00
...........................................................................................................TAGCACCATTCGAAATCAGTT................................	21	1	495.00	0.00	16.00	0.00	479.00
...........................................................................................................TAGCACAATTCGAAATCAGTGCT..............................	23	1	483.00	0.00	17.00	0.00	466.00
...........................................................................................................TAGCACCATTCGAAATCATTG................................	21	1	462.00	0.00	20.00	0.00	442.00
...........................................................................................................TAGCACCATTAGAAATCAGTGC...............................	22	1	417.00	0.00	11.00	0.00	406.00
...........................................................................................................TAGCACCATTCGAAATAAGTGC...............................	22	1	409.00	0.00	16.00	0.00	393.00
...........................................................................................................TATCACCATTCGAAATCAGTGCT..............................	23	1	390.00	0.00	5.00	0.00	385.00
...........................................................................................................TAGAACCATTCGAAATCAGTGC...............................	22	1	364.00	0.00	8.00	0.00	356.00
...........................................................................................................TAGCAACATTCGAAATCAGTG................................	21	1	359.00	0.00	2.00	0.00	357.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	344.00	0.00	8.00	0.00	336.00
...........................................................................................................TAGCACCATTCTAAATCAGTGCT..............................	23	1	306.00	0.00	13.00	0.00	293.00
...........................................................................................................TAGCACCATTCGAAATCATTGC...............................	22	1	306.00	0.00	26.00	0.00	280.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCG..............................	23	1	291.00	0.00	4.00	0.00	287.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	278.00	0.00	19.00	0.00	259.00
...........................................................................................................TAGCACCATTAGAAATCAGTGCT..............................	23	1	268.00	0.00	10.00	0.00	258.00
...........................................................................................................TAGCAACATTCGAAATCAGTGC...............................	22	1	247.00	0.00	9.00	0.00	238.00
..........................................................................................................CTAGCACCATTCGAAATCAGTG................................	22	1	240.00	0.00	6.00	0.00	234.00
...........................................................................................................TACCACCATTCGAAATCAGTG................................	21	1	238.00	0.00	1.00	0.00	237.00
...........................................................................................................TAGCACCATTCGAAATCAGCGC...............................	22	1	234.00	0.00	72.00	0.00	162.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGC...............................	23	1	234.00	0.00	37.00	0.00	197.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	228.00	0.00	5.00	0.00	223.00
...........................................................................................................TAGAACCATTCGAAATCAGTGCT..............................	23	1	226.00	0.00	9.00	0.00	217.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAT..............................	23	1	225.00	0.00	14.00	0.00	211.00
...........................................................................................................TAGCACCATTCGAAATCAGTTCT..............................	23	1	219.00	0.00	26.00	0.00	193.00
...........................................................................................................TAGCACCATTCAAAATCAGTG................................	21	1	215.00	0.00	1.00	0.00	214.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTA..............................	23	1	206.00	0.00	30.00	0.00	176.00
...........................................................................................................TAACACCATTCGAAATCAGTG................................	21	1	199.00	0.00	1.00	0.00	198.00
...........................................................................................................TAGCACCATTCGAAATCAGTA................................	21	1	195.00	0.00	14.00	0.00	181.00
...........................................................................................................TACCACCATTCGAAATCAGTGC...............................	22	1	188.00	0.00	6.00	0.00	182.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	187.00	0.00	3.00	0.00	184.00
...........................................................................................................TAGCACCATTCGAAATCAGCG................................	21	1	182.00	0.00	13.00	0.00	169.00
...........................................................................................................TAGCACCATTCGAAATCAGGGC...............................	22	1	181.00	0.00	31.00	0.00	150.00
...........................................................................................................TAGCACCATTCGAAATCATTGCT..............................	23	1	170.00	0.00	23.00	0.00	147.00
...........................................................................................................TAGCACCATTCGAAATCAGCGCT..............................	23	1	155.00	0.00	42.00	0.00	113.00
...........................................................................................................TAGCACCATTCGAAGTCAGTG................................	21	1	148.00	0.00	6.00	0.00	142.00
............................................................................................................AGCACCATTCGAAATCAGTG................................	20	1	143.00	0.00	5.00	0.00	138.00
...........................................................................................................TAACACCATTCGAAATCAGTGC...............................	22	1	142.00	0.00	10.00	0.00	132.00
...........................................................................................................TAGCACCATTTGAAATCAGTG................................	21	1	142.00	0.00	1.00	0.00	141.00
...........................................................................................................TAGCACCATTCGAACTCAGTGC...............................	22	1	142.00	0.00	101.00	0.00	41.00
...........................................................................................................TAGCACCATTCGAAACCAGTG................................	21	1	141.00	0.00	5.00	0.00	136.00
...........................................................................................................TAGCACCATTCGAAATCAGTTT...............................	22	1	140.00	0.00	21.00	0.00	119.00
...........................................................................................................TAGCACCATTCGAGATCAGTG................................	21	1	138.00	0.00	6.00	0.00	132.00
...........................................................................................................TAGCACCATTCAAAATCAGTGC...............................	22	1	137.00	0.00	12.00	0.00	125.00
...........................................................................................................TAGCACCATTCGCAATCAGTGC...............................	22	1	132.00	0.00	85.00	0.00	47.00
...........................................................................................................TAGCGCCATTCGAAATCAGTG................................	21	1	130.00	0.00	5.00	0.00	125.00
...........................................................................................................TGGCACCATTCGAAATCAGTG................................	21	1	125.00	0.00	5.00	0.00	120.00
...........................................................................................................TAGCACTATTCGAAATCAGTG................................	21	1	125.00	0.00	11.00	0.00	114.00
...........................................................................................................TAGCACCACTCGAAATCAGTG................................	21	1	124.00	0.00	3.00	0.00	121.00
...........................................................................................................CAGCACCATTCGAAATCAGTG................................	21	1	123.00	0.00	5.00	0.00	118.00
...........................................................................................................TAGCACCATTTGAAATCAGTGC...............................	22	1	117.00	0.00	6.00	0.00	111.00
............................................................................................................AGCACCATTCGAAATCAGTGC...............................	21	1	114.00	0.00	13.00	0.00	101.00
...........................................................................................................TAGCACCATTCGAAATCAGTC................................	21	1	114.00	0.00	3.00	0.00	111.00
...........................................................................................................TAGCACCATTCGAAATCAGTCC...............................	22	1	113.00	0.00	9.00	0.00	104.00
...........................................................................................................TAGCACCATTCGCAATCAGTGCT..............................	23	1	112.00	0.00	78.00	0.00	34.00
...........................................................................................................TAGCACCATTCGAACTCAGTG................................	21	1	111.00	0.00	30.00	0.00	81.00
...........................................................................................................TACCACCATTCGAAATCAGTGCT..............................	23	1	110.00	0.00	6.00	0.00	104.00
...........................................................................................................TAGCATCATTCGAAATCAGTG................................	21	1	110.00	0.00	3.00	0.00	107.00
...........................................................................................................TAGCACCATTCGAACTCAGTGCT..............................	23	1	108.00	0.00	90.00	0.00	18.00
...........................................................................................................TAGCACCATCCGAAATCAGTG................................	21	1	106.00	0.00	2.00	0.00	104.00
...........................................................................................................TAGCACCATTCGAAATCACTG................................	21	1	105.00	0.00	9.00	0.00	96.00
...........................................................................................................TAGCGCCATTCGAAATCAGTGC...............................	22	1	104.00	0.00	15.00	0.00	89.00
...........................................................................................................TAGCACCGTTCGAAATCAGTG................................	21	1	102.00	0.00	3.00	0.00	99.00
...........................................................................................................TAGTACCATTCGAAATCAGTGC...............................	22	1	100.00	0.00	8.00	0.00	92.00
...........................................................................................................TAGCACCATTCGCAATCAGTG................................	21	1	99.00	0.00	27.00	0.00	72.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCTT.............................	24	1	96.00	0.00	21.00	0.00	75.00
...........................................................................................................TAGCACCATTCGAAATCGGTG................................	21	1	96.00	0.00	4.00	0.00	92.00
...........................................................................................................TAGTACCATTCGAAATCAGTG................................	21	1	95.00	0.00	3.00	0.00	92.00
...........................................................................................................TAGGACCATTCGAAATCAGTG................................	21	1	95.00	0.00	4.00	0.00	91.00
...........................................................................................................TAGCACTATTCGAAATCAGTGC...............................	22	1	94.00	0.00	28.00	0.00	66.00
...........................................................................................................CAGCACCATTCGAAATCAGTGC...............................	22	1	92.00	0.00	16.00	0.00	76.00
...........................................................................................................TAACACCATTCGAAATCAGTGCT..............................	23	1	91.00	0.00	8.00	0.00	83.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGCT..............................	24	1	91.00	0.00	11.00	0.00	80.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGC...............................	22	1	90.00	0.00	11.00	0.00	79.00
...........................................................................................................TAGCACCACTCGAAATCAGTGC...............................	22	1	89.00	0.00	11.00	0.00	78.00
...........................................................................................................TAGCACCATTCGAAATTAGTG................................	21	1	88.00	0.00	1.00	0.00	87.00
..............................................................................................................CACCATTCGAAATCAGTGC...............................	19	1	87.00	0.00	2.00	0.00	85.00
...........................................................................................................TAGCACCATTCAAAATCAGTGCT..............................	23	1	86.00	0.00	9.00	0.00	77.00
...........................................................................................................TAGCACCATTCGGAATCAGTG................................	21	1	85.00	0.00	8.00	0.00	77.00
...........................................................................................................TAGCACCATTCGAGATCAGTGC...............................	22	1	82.00	0.00	9.00	0.00	73.00

droAna3

GC-----TAGCCAGGATA----------ATTCGAATCAAAGAACTGAGATCGATTGGTGCATAGATATC----AAGGAGATCCGA-----TC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATAAGAACCACTCAACAG--A-----	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	54820.00	313.00	36029.00	18477.00	1.00
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	40643.00	107.00	38918.00	1617.00	1.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	31870.00	142.00	24987.00	6740.00	1.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	7918.00	158.00	7293.00	467.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	7386.00	360.00	3069.00	3957.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	4755.00	356.00	2180.00	2219.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	2440.00	86.00	1382.00	972.00	0.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	1831.00	49.00	1682.00	100.00	0.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	1724.00	67.00	1416.00	241.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTG................................	21	1	1144.00	1.00	1141.00	2.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGCT..............................	23	1	1053.00	3.00	1030.00	20.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	854.00	5.00	592.00	257.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGC...............................	22	1	749.00	3.00	739.00	7.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	740.00	4.00	444.00	292.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	617.00	0.00	311.00	306.00	0.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	560.00	14.00	508.00	38.00	0.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	523.00	14.00	477.00	32.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTT................................	21	1	457.00	1.00	407.00	49.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTTCT..............................	23	1	397.00	2.00	370.00	25.00	0.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	301.00	13.00	270.00	18.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGCT..............................	23	1	296.00	0.00	62.00	234.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTTC...............................	22	1	291.00	1.00	271.00	19.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTA................................	21	1	269.00	2.00	248.00	19.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTACT..............................	23	1	268.00	5.00	249.00	14.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAT..............................	23	1	235.00	1.00	208.00	26.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGT...............................................................................................	23	1	224.00	7.00	200.00	17.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTG................................	21	1	201.00	0.00	189.00	12.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCTT.............................	24	1	195.00	1.00	134.00	60.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTGCT..............................	23	1	195.00	0.00	148.00	47.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAA..............................................................................................	24	1	186.00	0.00	178.00	8.00	0.00
..........................................ACTGAGATCGATTGGTGCA...................................................................................................	19	1	175.00	6.00	162.00	7.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTAC...............................	22	1	174.00	1.00	164.00	9.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGC...............................	22	1	170.00	1.00	28.00	141.00	0.00
..............................................................................................................CACCATTCGAAATCAGTG................................	18	1	168.00	0.00	158.00	10.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGCT..............................	23	1	167.00	1.00	9.00	157.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTGCT..............................	23	1	160.00	0.00	79.00	81.00	0.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	158.00	2.00	133.00	23.00	0.00
.................................................................TATC----AAGGAGATCCGA-----TC----AT-TTC..........................................................	23	1	149.00	3.00	126.00	20.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTCCT..............................	23	1	148.00	2.00	108.00	38.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTGCT..............................	23	1	143.00	0.00	73.00	70.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGCT..............................	23	1	132.00	0.00	15.00	117.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTGC...............................	22	1	129.00	0.00	113.00	16.00	0.00
...........................................................................................................TAGCACCATGCGAAATCAGTGCT..............................	23	1	128.00	0.00	4.00	124.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGCT..............................	23	1	118.00	0.00	18.00	100.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTC................................	21	1	115.00	1.00	112.00	2.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTA..............................	23	1	115.00	3.00	74.00	38.00	0.00
...........................................................................................................TAGCACCATTCTAAATCAGTGCT..............................	23	1	111.00	1.00	86.00	24.00	0.00
...........................................................................................................TAGCACCATTCTAAATCAGTG................................	21	1	105.00	1.00	102.00	2.00	0.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGCT..............................	23	1	101.00	1.00	54.00	46.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTGC...............................	22	1	101.00	0.00	67.00	34.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	100.00	0.00	60.00	40.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGT...............................	22	1	98.00	2.00	93.00	3.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTG................................	21	1	95.00	0.00	93.00	2.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	95.00	1.00	47.00	47.00	0.00
...........................................................................................................TAGCACCGTTCGAAATCAGTGCT..............................	23	1	95.00	0.00	31.00	64.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTG................................	21	1	94.00	0.00	88.00	6.00	0.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	88.00	0.00	18.00	70.00	0.00
...........................................................................................................TAGCACCATCCGAAATCAGTGCT..............................	23	1	86.00	0.00	39.00	47.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGCT..............................	23	1	83.00	0.00	11.00	72.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTGCT..............................	23	1	83.00	0.00	51.00	32.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTCC...............................	22	1	81.00	1.00	60.00	20.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTG................................	21	1	79.00	0.00	76.00	3.00	0.00
...........................................................................................................TAGCACCATTCAAAATCAGTGCT..............................	23	1	77.00	2.00	52.00	23.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTGC...............................	22	1	74.00	1.00	54.00	19.00	0.00
...........................................................................................................TAGCACCATTTGAAATCAGTGCT..............................	23	1	73.00	2.00	49.00	22.00	0.00
...........................................................................................................TAGCACCATTCGAAACCAGTGCT..............................	23	1	71.00	1.00	33.00	37.00	0.00
...........................................................................................................TAGCACCATTCGAAATCACTGCT..............................	23	1	71.00	0.00	10.00	61.00	0.00
...........................................................................................................TAGCGCCATTCGAAATCAGTGCT..............................	23	1	70.00	0.00	42.00	28.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTGCT..............................	23	1	70.00	0.00	23.00	47.00	0.00
...........................................................................................................TAGCACCATTCGAAGTCAGTG................................	21	1	69.00	0.00	64.00	5.00	0.00
...........................................................................................................TAGCACCACTCGAAATCAGTGCT..............................	23	1	68.00	1.00	37.00	30.00	0.00
...........................................................................................................TAACACCATTCGAAATCAGTGCT..............................	23	1	68.00	0.00	26.00	42.00	0.00
...........................................................................................................TAGCACCATTCGAGATCAGTGCT..............................	23	1	68.00	3.00	45.00	20.00	0.00
...........................................................................................................TAGCACCATTCAAAATCAGTG................................	21	1	68.00	1.00	67.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGC...............................	22	1	68.00	0.00	7.00	61.00	0.00
...........................................................................................................AAGCACCATTCGAAATCAGTGCT..............................	23	1	66.00	0.00	6.00	60.00	0.00
..........................................ACGGAGATCGATTGGTGCATAGA...............................................................................................	23	1	65.00	0.00	59.00	6.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTGCT..............................	23	1	64.00	1.00	34.00	29.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTGC...............................	22	1	64.00	0.00	51.00	13.00	0.00
...........................................................................................................TAGCACTATTCGAAATCAGTGCT..............................	23	1	64.00	0.00	25.00	39.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGCT..............................	23	1	63.00	0.00	9.00	54.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCG..............................	23	1	62.00	0.00	36.00	26.00	0.00
...........................................................................................................TAGCACCATTCTAAATCAGTGC...............................	22	1	61.00	1.00	54.00	6.00	0.00
...........................................................................................................TAGCACCATTCCAAATCAGTGCT..............................	23	1	61.00	0.00	16.00	45.00	0.00
...........................................................................................................GAGCACCATTCGAAATCAGTGCT..............................	23	1	60.00	0.00	9.00	51.00	0.00
...........................................................................................................TAGCACCATTTGAAATCAGTG................................	21	1	58.00	0.00	56.00	2.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTGC...............................	22	1	58.00	0.00	42.00	16.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGC...............................	22	1	58.00	2.00	10.00	46.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGT.................................	20	1	58.00	3.00	53.00	2.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTG................................	21	1	56.00	0.00	55.00	1.00	0.00
...........................................CTGAGATCGATTGGTGCATAGA...............................................................................................	22	1	52.00	3.00	47.00	2.00	0.00
...........................................................................................................TACCACCATTCGAAATCAGTGC...............................	22	1	52.00	0.00	39.00	13.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGC...............................	22	1	51.00	1.00	2.00	48.00	0.00
...........................................................................................................TACCACCATTCGAAATCAGTG................................	21	1	51.00	0.00	51.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGC...............................	22	1	50.00	0.00	5.00	45.00	0.00
...........................................................................................................TAGCATCATTCGAAATCAGTGCT..............................	23	1	50.00	0.00	26.00	24.00	0.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGC...............................	22	1	50.00	0.00	23.00	27.00	0.00
...........................................................................................................TAGCGCCATTCGAAATCAGTG................................	21	1	50.00	0.00	47.00	3.00	0.00
...........................................................................................................TAGCACCAGTCGAAATCAGTGCT..............................	23	1	50.00	0.00	0.00	50.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTG................................	21	1	50.00	0.00	47.00	3.00	0.00
...........................................................................................................TAGTACCATTCGAAATCAGTGCT..............................	23	1	49.00	0.00	27.00	22.00	0.00

dp4

TC-----TTACAATTACA----------GTTCGAATCGAAGAACTGAGATCGATTGGTGCATAGATATC----AAGAGGACTCGC-----TA----ATTTTCAACTCTAGCACCATTCGAAATCAGTGCTTTTGATGAGAACCATTCAACAGAAAGTGTT	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	24943.00	65.00	3.00	24875.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	12361.00	23.00	1.00	12335.00	2.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	2712.00	32.00	0.00	2680.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	1871.00	17.00	0.00	1854.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	1089.00	25.00	0.00	1064.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	486.00	42.00	2.00	424.00	18.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	380.00	0.00	0.00	380.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	246.00	1.00	0.00	245.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	190.00	1.00	0.00	189.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGCT..............................	23	1	140.00	0.00	0.00	140.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGC...............................	22	1	110.00	0.00	0.00	110.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	95.00	1.00	0.00	94.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGCT..............................	23	1	87.00	0.00	0.00	87.00	0.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	83.00	9.00	0.00	73.00	1.00
...........................................................................................................TAGCACCATTCGTAATCAGTGCT..............................	23	1	80.00	0.00	0.00	80.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGCT..............................	23	1	67.00	0.00	0.00	67.00	0.00
...........................................................................................................TAACACCATTCGAAATCAGTGCT..............................	23	1	64.00	0.00	0.00	64.00	0.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	61.00	4.00	0.00	55.00	2.00
...........................................................................................................TAGCACCATTCGAAATCAGGGC...............................	22	1	52.00	0.00	0.00	52.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGCT..............................	23	1	51.00	0.00	0.00	51.00	0.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	50.00	4.00	0.00	44.00	2.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	48.00	12.00	0.00	33.00	3.00
...........................................................................................................TACCACCATTCGAAATCAGTGCT..............................	23	1	47.00	0.00	0.00	47.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTGCT..............................	23	1	45.00	0.00	0.00	45.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCTT.............................	24	1	44.00	0.00	0.00	44.00	0.00
...........................................................................................................TAGCACCGTTCGAAATCAGTGCT..............................	23	1	43.00	0.00	1.00	42.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	42.00	0.00	0.00	42.00	0.00
...........................................................................................................TAGCACCATCCGAAATCAGTGCT..............................	23	1	41.00	0.00	0.00	41.00	0.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGCT..............................	23	1	41.00	0.00	0.00	41.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGC...............................	22	1	39.00	0.00	0.00	39.00	0.00
...........................................................................................................TAGCACCATGCGAAATCAGTGCT..............................	23	1	39.00	0.00	0.00	39.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTGCT..............................	23	1	38.00	0.00	0.00	38.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGC...............................	22	1	37.00	0.00	0.00	37.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGCT..............................	23	1	36.00	0.00	0.00	36.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGCT..............................	23	1	35.00	0.00	0.00	35.00	0.00
............................................................................................................AGCACCATTCGAAATCAGTGCT..............................	22	1	34.00	1.00	0.00	33.00	0.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGCT..............................	24	1	34.00	0.00	0.00	34.00	0.00
...........................................................................................................TAGCACCACTCGAAATCAGTGCT..............................	23	1	34.00	0.00	0.00	34.00	0.00
...........................................................................................................TAGCACTATTCGAAATCAGTGCT..............................	23	1	33.00	0.00	0.00	33.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTGCT..............................	23	1	32.00	0.00	0.00	32.00	0.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	32.00	0.00	0.00	32.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	31.00	0.00	0.00	31.00	0.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	31.00	5.00	0.00	22.00	4.00
...........................................................................................................TAGCGCCATTCGAAATCAGTGCT..............................	23	1	30.00	0.00	0.00	30.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGC...............................	22	1	29.00	0.00	1.00	28.00	0.00
...........................................................................................................TAGCATCATTCGAAATCAGTGCT..............................	23	1	29.00	0.00	0.00	29.00	0.00
...........................................................................................................TAGCACCATTCGAAATCACTGCT..............................	23	1	29.00	0.00	0.00	29.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTGCT..............................	23	1	28.00	0.00	0.00	28.00	0.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGC...............................	23	1	28.00	0.00	0.00	28.00	0.00
...........................................................................................................TAACACCATTCGAAATCAGTGC...............................	22	1	26.00	0.00	0.00	26.00	0.00
...........................................................................................................TGGCACCATTCGAAATCAGTGCT..............................	23	1	25.00	0.00	0.00	25.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAT..............................	23	1	25.00	0.00	0.00	25.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTCCT..............................	23	1	24.00	0.00	0.00	24.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGC...............................	22	1	24.00	0.00	0.00	24.00	0.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	23.00	4.00	0.00	17.00	2.00
...........................................................................................................TAGCACCATTCGAAACCAGTGCT..............................	23	1	23.00	0.00	0.00	23.00	0.00
...........................................................................................................TAGCACCATTCCAAATCAGTGCT..............................	23	1	23.00	0.00	0.00	23.00	0.00
...........................................................................................................TAGCACCATTCGAAATCACTGC...............................	22	1	22.00	0.00	0.00	22.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTGC...............................	22	1	22.00	0.00	0.00	22.00	0.00
...........................................................................................................TAGCACCATTCAAAATCAGTGCT..............................	23	1	20.00	0.00	0.00	20.00	0.00
...........................................................................................................TACCACCATTCGAAATCAGTGC...............................	22	1	20.00	0.00	0.00	20.00	0.00
...........................................................................................................TAGCACCATTCGAGATCAGTGCT..............................	23	1	20.00	0.00	0.00	20.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTGC...............................	22	1	20.00	0.00	0.00	20.00	0.00
...........................................................................................................TAGCACCATTCGAAAGCAGTGCT..............................	23	1	19.00	0.00	0.00	19.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTGCT..............................	23	1	19.00	0.00	0.00	19.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTGC...............................	22	1	19.00	0.00	0.00	19.00	0.00
...........................................................................................................TAGCAGCATTCGAAATCAGTGCT..............................	23	1	18.00	0.00	0.00	18.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGT...............................	22	1	18.00	0.00	0.00	18.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTACT..............................	23	1	18.00	0.00	0.00	18.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTGCT..............................	23	1	18.00	0.00	0.00	18.00	0.00
...........................................................................................................TAGCACCATTCGAAATCGGTGCT..............................	23	1	18.00	0.00	0.00	18.00	0.00
...........................................................................................................TAGCACCATGCGTAATCAGTGCT..............................	23	1	17.00	0.00	0.00	17.00	0.00
...........................................................................................................TAGCACCAGTCGAAATCAGTGCT..............................	23	1	17.00	0.00	0.00	17.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCG..............................	23	1	17.00	0.00	0.00	17.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTGC...............................	22	1	17.00	0.00	0.00	17.00	0.00
...........................................................................................................AAGCACCATTCGAAATCAGTGCT..............................	23	1	17.00	0.00	0.00	17.00	0.00
............................................................................................................AGCACCATTCGAAATCAGTGC...............................	21	1	17.00	0.00	0.00	17.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTA..............................	23	1	16.00	0.00	0.00	16.00	0.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGC...............................	22	1	16.00	0.00	0.00	16.00	0.00
...........................................................................................................TAGCACCATTCGAATTCAGTGCT..............................	23	1	16.00	0.00	0.00	16.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTGC...............................	22	1	16.00	0.00	0.00	16.00	0.00
...........................................................................................................TAGCACCATCCGAAATCAGTGC...............................	22	1	15.00	0.00	0.00	15.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTA................................	21	1	14.00	1.00	0.00	13.00	0.00
...........................................................................................................GAGCACCATTCGAAATCAGTGCT..............................	23	1	14.00	0.00	0.00	14.00	0.00
...........................................................................................................TAGCGCCATTCGAAATCAGTGC...............................	22	1	14.00	0.00	0.00	14.00	0.00
...........................................................................................................TAGCACCATGCGAAATCAGTGC...............................	22	1	14.00	0.00	0.00	14.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGC...............................	22	1	14.00	0.00	0.00	14.00	0.00
...........................................................................................................TAGCACCATTCGAAATCCGTGCT..............................	23	1	14.00	0.00	0.00	14.00	0.00
...........................................................................................................TAGCATCATTCGAAATCAGTGC...............................	22	1	14.00	0.00	0.00	14.00	0.00
...........................................................................................................TAGCACCACTCGAAATCAGTGC...............................	22	1	14.00	0.00	0.00	14.00	0.00
...........................................................................................................TAGCACCCTTCGAAATCAGTGCT..............................	23	1	13.00	1.00	0.00	12.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTGC...............................	22	1	13.00	0.00	0.00	13.00	0.00
.............................................................................................................GCACCATTCGAAATCAGTGCT..............................	21	1	13.00	0.00	0.00	13.00	0.00
...........................................................................................................TAGCACCATTCGAAATTAGTGCT..............................	23	1	13.00	0.00	0.00	13.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTTCT..............................	23	1	13.00	0.00	0.00	13.00	0.00
...........................................................................................................TGGCACCATTCGAAATCAGTGC...............................	22	1	13.00	0.00	0.00	13.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTGC...............................	22	1	12.00	0.00	0.00	12.00	0.00
...........................................................................................................TAGCACCATTCGAAAACAGTGCT..............................	23	1	12.00	0.00	0.00	12.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTAC...............................	22	1	12.00	0.00	0.00	12.00	0.00
...........................................................................................................TAGCAACATTCGAAATCAGTGC...............................	22	1	12.00	0.00	0.00	12.00	0.00
...........................................................................................................TAGCACCATTTGAAATCAGTGCT..............................	23	1	12.00	0.00	0.00	12.00	0.00

droPer1

----------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

V111
Male body

V042
Embryo

V050
Head

V057
Head

M021
Embryo

droWil1

AC--------------CACATACAAATTGTTCGAATTAAAGAACTGAGATCGATTGGTGCATAGATAAT----ATGCGAATTCTATCATTTGATTTCA-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTGATTAGAACCAATCAACAA--G-----	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	148215.00	19.00	71.00	147030.00	1095.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	93382.00	82.00	42.00	15324.00	77934.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	48610.00	13.00	89.00	44265.00	4243.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	44217.00	50.00	95.00	43840.00	232.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	10839.00	9.00	4.00	1192.00	9634.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	9442.00	17.00	0.00	1775.00	7650.00
..........................................ACTGAGATCGATTGGTGCATAGG...............................................................................................	23	1	7101.00	0.00	0.00	16.00	7085.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	4435.00	49.00	11.00	4313.00	62.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	3470.00	36.00	7.00	3402.00	25.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	2633.00	2.00	2.00	282.00	2347.00
..........................................ACTGAGATCGATTGGTGCATAGC...............................................................................................	23	1	2238.00	0.00	0.00	42.00	2196.00
..........................................ACTGAGATCGATTGGTGCATAGT...............................................................................................	23	1	1238.00	1.00	0.00	151.00	1086.00
..........................................ACTGAGATCGATTGGTGCA...................................................................................................	19	1	1221.00	0.00	0.00	73.00	1148.00
..........................................ACTGAGATCGATTGGTGCATAGAA..............................................................................................	24	1	1161.00	0.00	2.00	278.00	881.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	901.00	0.00	0.00	126.00	775.00
..........................................ACTGAGATCGATTGGGGCATAGA...............................................................................................	23	1	825.00	0.00	0.00	95.00	730.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	655.00	0.00	7.00	604.00	44.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	636.00	4.00	2.00	626.00	4.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	627.00	1.00	2.00	614.00	10.00
...........................................CTGAGATCGATTGGTGCATAGA...............................................................................................	22	1	580.00	2.00	1.00	264.00	313.00
...........................................................................................................CAGCACCATTCGAAATCAGTG................................	21	1	521.00	0.00	0.00	521.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTG................................	21	1	485.00	0.00	0.00	485.00	0.00
..............................................................................................................CACCATTCGAAATCAGTG................................	18	1	464.00	0.00	0.00	451.00	13.00
...........................................................................................................TAGAACCATTCGAAATCAGTG................................	21	1	436.00	0.00	0.00	436.00	0.00
...........................................................................................................TAGCAACATTCGAAATCAGTG................................	21	1	428.00	0.00	0.00	427.00	1.00
...........................................................................................................TAGCACCATTAGAAATCAGTG................................	21	1	428.00	0.00	0.00	428.00	0.00
...........................................................................................................TAGCACCATTCAAAATCAGTG................................	21	1	412.00	0.00	0.00	407.00	5.00
..........................................ACTGAGATCGATTGGTGCATAGAT..............................................................................................	24	1	409.00	0.00	1.00	58.00	350.00
..........................................ACTGAGATCGATTGGTGCATAGAAA.............................................................................................	25	1	370.00	0.00	0.00	107.00	263.00
...........................................................................................................TAGCACCATTCGAAATCAATG................................	21	1	355.00	0.00	0.00	355.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	352.00	1.00	2.00	349.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTG................................	21	1	330.00	0.00	1.00	316.00	13.00
............................................TGAGATCGATTGGTGCATAGAT..............................................................................................	22	1	287.00	0.00	0.00	265.00	22.00
...........................................................................................................TAGCACCATTCGAAATCAGTA................................	21	1	279.00	0.00	0.00	279.00	0.00
..........................................ACTGAGATCGATTGGTGCAC..................................................................................................	20	1	277.00	0.00	0.00	4.00	273.00
..........................................................................................................CTAGCACCATTCGAAATCAGTG................................	22	1	273.00	0.00	0.00	273.00	0.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	272.00	0.00	1.00	56.00	215.00
...........................................................................................................AAGCACCATTCGAAATCAGTG................................	21	1	267.00	0.00	0.00	267.00	0.00
..........................................ACTGAGATCGATGGGTGCATAGA...............................................................................................	23	1	240.00	0.00	0.00	1.00	239.00
...........................................................................................................TACCACCATTCGAAATCAGTG................................	21	1	238.00	0.00	0.00	232.00	6.00
..........................................ACTGAGATCGATTGGTTCATAGA...............................................................................................	23	1	229.00	0.00	0.00	13.00	216.00
...........................................................................................................TAGCACCATTCGAAATCAGCG................................	21	1	208.00	0.00	0.00	208.00	0.00
..........................................ACTGAGATCGATTGGTGCATGG................................................................................................	22	1	204.00	0.00	0.00	0.00	204.00
............................................TGAGATCGATTGGTGCATAGA...............................................................................................	21	1	203.00	0.00	0.00	186.00	17.00
...........................................................................................................TAACACCATTCGAAATCAGTG................................	21	1	195.00	0.00	0.00	195.00	0.00
..........................................ACTGAGATCGATTTGTGCATAGA...............................................................................................	23	1	188.00	0.00	0.00	16.00	172.00
..........................................ACTGAGATCGATTGGAGCATAGA...............................................................................................	23	1	188.00	0.00	0.00	44.00	144.00
..........................................ACTGAGATCGATTGGCGCATAGA...............................................................................................	23	1	187.00	1.00	0.00	70.00	116.00
...........................................................................................................TAGCACCATTCGAAGTCAGTG................................	21	1	187.00	0.00	0.00	186.00	1.00
...........................................................................................................TAGCACCATTCGAGATCAGTG................................	21	1	186.00	0.00	0.00	186.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGC...............................	22	1	185.00	0.00	1.00	177.00	7.00
...........................................................................................................TAGCACCACTCGAAATCAGTG................................	21	1	183.00	0.00	0.00	182.00	1.00
...........................................................................................................GAGCACCATTCGAAATCAGTG................................	21	1	182.00	0.00	0.00	181.00	1.00
...........................................................................................................TAGCACCATCCGAAATCAGTG................................	21	1	181.00	0.00	1.00	180.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAT..............................	23	1	173.00	0.00	0.00	173.00	0.00
............................................................................................................AGCACCATTCGAAATCAGTG................................	20	1	171.00	0.00	0.00	171.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTGC...............................	22	1	169.00	0.00	0.00	168.00	1.00
...........................................................................................................TAGCACCATTCGAAATCATTG................................	21	1	166.00	0.00	0.00	166.00	0.00
...........................................................................................................TAGCACCATTCGAAACCAGTG................................	21	1	166.00	0.00	0.00	165.00	1.00
..........................................ACTGAGATCGATTxGTGCATAGA...............................................................................................	22	1	166.00	0.00	0.00	15.00	151.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	165.00	0.00	0.00	13.00	152.00
...........................................................................................................TAGCGCCATTCGAAATCAGTG................................	21	1	164.00	0.00	0.00	163.00	1.00
..........................................ACTGAGATCGATAGGTGCATAGA...............................................................................................	23	1	163.00	0.00	0.00	9.00	154.00
...........................................................................................................TAGCACCCTTCGAAATCAGTG................................	21	1	160.00	0.00	0.00	160.00	0.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	156.00	0.00	0.00	156.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTGC...............................	22	1	155.00	0.00	0.00	153.00	2.00
...........................................................................................................CAGCACCATTCGAAATCAGTGCT..............................	23	1	146.00	0.00	0.00	146.00	0.00
...........................................................................................................TAGCATCATTCGAAATCAGTG................................	21	1	145.00	0.00	0.00	143.00	2.00
..........................................ACTGAGATCGATTGGGGCAT..................................................................................................	20	1	144.00	0.00	0.00	14.00	130.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	142.00	0.00	0.00	142.00	0.00
..........................................ACTGAGATCGATTGGTCCATAGA...............................................................................................	23	1	141.00	0.00	0.00	12.00	129.00
...........................................................................................................TAGCACCATTTGAAATCAGTG................................	21	1	140.00	0.00	0.00	140.00	0.00
...........................................................................................................TAGCCCCATTCGAAATCAGTG................................	21	1	140.00	0.00	0.00	140.00	0.00
..........................................ACTGAGATCGATTGGTGCATAA................................................................................................	22	1	136.00	0.00	0.00	16.00	120.00
...........................................................................................................TAGCAACATTCGAAATCAGTGC...............................	22	1	135.00	0.00	0.00	133.00	2.00
...........................................................................................................TAGCACCATTCAAAATCAGTGC...............................	22	1	133.00	0.00	0.00	121.00	12.00
...........................................................................................................TAGCACCATTCGAAATCAGTT................................	21	1	132.00	0.00	0.00	132.00	0.00
...........................................................................................................TAGTACCATTCGAAATCAGTGC...............................	22	1	132.00	0.00	0.00	131.00	1.00
...........................................................................................................TAGCACCATTCGAACTCAGTG................................	21	1	131.00	0.00	0.00	131.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGC...............................	22	1	129.00	0.00	0.00	117.00	12.00
...........................................................................................................TAGCxCCATTCGAAATCAGTGC...............................	21	1	129.00	0.00	0.00	129.00	0.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGC...............................	23	1	128.00	0.00	3.00	106.00	19.00
...........................................................................................................TAGCACCATTCGAAATTAGTG................................	21	1	127.00	0.00	0.00	126.00	1.00
...........................................................................................................TAGCACCATTAGAAATCAGTGC...............................	22	1	126.00	0.00	0.00	124.00	2.00
...........................................................................................................TAGCACCATTCGAAATCCGTG................................	21	1	125.00	0.00	0.00	125.00	0.00
..........................................ACTGAGATCGATTGTTGCATAGA...............................................................................................	23	1	125.00	0.00	1.00	15.00	109.00
...........................................................................................................TAGCACCGTTCGAAATCAGTG................................	21	1	124.00	0.00	0.00	124.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTGC...............................	22	1	124.00	0.00	0.00	124.00	0.00
..........................................ACTGAGATCGATTGGGGCATAG................................................................................................	22	1	123.00	0.00	0.00	7.00	116.00
...........................................................................................................TAGCACCATTCGAAATCACTG................................	21	1	123.00	0.00	0.00	123.00	0.00
...........................................................................................................TAGCACCATTCAAAATCAGTGCT..............................	23	1	123.00	0.00	1.00	122.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTG................................	21	1	121.00	0.00	0.00	117.00	4.00
...........................................................................................................TAGCACCATTAGAAATCAGTGCT..............................	23	1	119.00	0.00	0.00	119.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTGCT..............................	23	1	119.00	0.00	1.00	118.00	0.00
...........................................................................................................TAGTACCATTCGAAATCAGTG................................	21	1	116.00	0.00	0.00	115.00	1.00
...........................................................................................................TGGCACCATTCGAAATCAGTG................................	21	1	114.00	0.00	0.00	114.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTG................................	21	1	114.00	0.00	0.00	113.00	1.00

droVir3

AT-----GCACC-AGCCA----------GTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGCC--CAAAAAGTAAT-----TC----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTCGAACCGATCAGCGG--CGCATC	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	16319.00	25.00	16262.00	2.00	0.00	30.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	10066.00	29.00	439.00	1.00	230.00	9367.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	9728.00	24.00	9258.00	2.00	11.00	433.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	6552.00	20.00	272.00	0.00	95.00	6165.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	5431.00	26.00	213.00	0.00	98.00	5094.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	2941.00	9.00	2929.00	0.00	0.00	3.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	2812.00	28.00	2767.00	1.00	2.00	14.00
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	2723.00	9.00	2586.00	2.00	1.00	125.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	2479.00	16.00	215.00	0.00	52.00	2196.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	2329.00	10.00	226.00	1.00	29.00	2063.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	1688.00	6.00	95.00	0.00	32.00	1555.00
..........................................ACTGAGATCGATTGGTGCATAGG...............................................................................................	23	1	1298.00	0.00	0.00	0.00	30.00	1268.00
.........................................AACTGAGATCGATTGGTGCATAGG...............................................................................................	24	1	717.00	0.00	0.00	0.00	18.00	699.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	542.00	1.00	537.00	0.00	0.00	4.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	480.00	1.00	471.00	0.00	0.00	8.00
.........................................AACTGAGATCGATTGGTGCATA.................................................................................................	22	1	417.00	5.00	26.00	0.00	5.00	381.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	412.00	1.00	411.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGT...............................................................................................	23	1	404.00	0.00	13.00	0.00	3.00	388.00
.........................................AACTGAGATCGATTGGTGCATAGT...............................................................................................	24	1	380.00	0.00	14.00	0.00	4.00	362.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	373.00	5.00	49.00	0.00	5.00	314.00
...........................................................................................................TAGCACCATTCGAAATCAGCGCT..............................	23	1	329.00	0.00	329.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCA...................................................................................................	19	1	310.00	0.00	25.00	0.00	4.00	281.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	303.00	0.00	303.00	0.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCAC..................................................................................................	21	1	302.00	0.00	2.00	0.00	5.00	295.00
...........................................................................................................TAGCACCATTCGAAATCAGCGC...............................	22	1	274.00	0.00	273.00	0.00	0.00	1.00
.........................................AACTGAGATCGATTGGTGCA...................................................................................................	20	1	219.00	0.00	13.00	0.00	2.00	204.00
..........................................ACTGAGATCGATTGGTGCATAGAA..............................................................................................	24	1	202.00	1.00	0.00	0.00	2.00	199.00
.........................................AACTGAGATCGATTGGTGCATT.................................................................................................	22	1	174.00	0.00	12.00	0.00	0.00	162.00
..........................................ACTGAGATCGATTGGTGC....................................................................................................	18	1	146.00	0.00	0.00	0.00	1.00	145.00
.........................................AACTGAGATCGATTGGTGCATAGAA..............................................................................................	25	1	139.00	0.00	5.00	1.00	0.00	133.00
.........................................AACTGAGATCGATTGGTGCATAT................................................................................................	23	1	137.00	0.00	4.00	0.00	1.00	132.00
..........................................ACTGAGATCGATTGGTGCATT.................................................................................................	21	1	133.00	0.00	1.00	0.00	0.00	132.00
.........................................AACTGAGATCGATTGGTGCATAGAT..............................................................................................	25	1	113.00	0.00	3.00	0.00	1.00	109.00
...........................................................................................................TAGCACCATGCGAAATCAGTGCT..............................	23	1	110.00	0.00	110.00	0.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCAG..................................................................................................	21	1	109.00	0.00	0.00	0.00	2.00	107.00
...........................................................................................................TAGCACCATTCGTAATCAGTGCT..............................	23	1	109.00	0.00	109.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAT..............................................................................................	24	1	107.00	0.00	1.00	0.00	3.00	103.00
..........................................ACTGAGATCGATTGGGGCATAGA...............................................................................................	23	1	102.00	0.00	3.00	0.00	3.00	96.00
..........................................ACTGAGATCGATTGGTGCAC..................................................................................................	20	1	95.00	0.00	1.00	0.00	3.00	91.00
...........................................................................................................TAGCACCATTCGAAATCAGTT................................	21	1	95.00	1.00	93.00	0.00	0.00	1.00
...........................................................................................................TAGCACAATTCGAAATCAGTGCT..............................	23	1	87.00	0.00	87.00	0.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGCATAA................................................................................................	23	1	84.00	0.00	4.00	0.00	0.00	80.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCTT.............................	24	1	78.00	0.00	78.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAT................................................................................................	22	1	71.00	0.00	0.00	0.00	0.00	71.00
.........................................AACTGAGATCGATTGGTGCATTT................................................................................................	23	1	70.00	0.00	4.00	0.00	0.00	66.00
.........................................AACTGAGATCGATTGGTGCATGG................................................................................................	23	1	67.00	0.00	1.00	0.00	0.00	66.00
.........................................AACTGAGATCGATTGGTGCATAGC...............................................................................................	24	1	66.00	0.00	0.00	0.00	2.00	64.00
...........................................................................................................TAGCACCATTCGCAATCAGTGCT..............................	23	1	62.00	0.00	62.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAAA.............................................................................................	25	1	61.00	0.00	2.00	0.00	0.00	59.00
...........................................................................................................TAGCACCATGCGAAATCAGTGC...............................	22	1	55.00	0.00	55.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGT...............................	22	1	50.00	0.00	50.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTA................................	21	1	49.00	0.00	49.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATGG................................................................................................	22	1	49.00	0.00	1.00	0.00	1.00	47.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	48.00	0.00	45.00	0.00	0.00	3.00
...........................................................................................................TAGCACCATTCGAAATCAGGGCT..............................	23	1	47.00	0.00	47.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGCT..............................	23	1	46.00	0.00	46.00	0.00	0.00	0.00
.........................................AACTGAGATCGATTGGGGCAT..................................................................................................	21	1	45.00	0.00	3.00	0.00	1.00	41.00
...........................................................................................................TAGCACCATTCGAAATCAGGGC...............................	22	1	43.00	0.00	42.00	0.00	0.00	1.00
.........................................AACTGAGATCGATTGGTGCATAGAAA.............................................................................................	26	1	42.00	0.00	0.00	0.00	2.00	40.00
...........................................................................................................TAGCACCATTCGTAATCAGTGC...............................	22	1	41.00	0.00	41.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCG................................	21	1	41.00	0.00	41.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTGCT..............................	23	1	41.00	0.00	41.00	0.00	0.00	0.00
...........................................CTGAGATCGATTGGTGCATAGA...............................................................................................	22	1	40.00	0.00	2.00	0.00	1.00	37.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	40.00	0.00	40.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAA................................................................................................	22	1	40.00	0.00	1.00	0.00	1.00	38.00
...........................................................................................................TAGCACCATGCGTAATCAGTGCT..............................	23	1	39.00	0.00	39.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTCC...............................	22	1	39.00	0.00	39.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTA..............................	23	1	38.00	0.00	38.00	0.00	0.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTGCT..............................	23	1	38.00	0.00	38.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGT....................................................................................................	18	1	38.00	0.00	3.00	0.00	0.00	35.00
...........................................................................................................TAGCACCATGCGAAATCAGCGCT..............................	23	1	37.00	0.00	37.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTCCT..............................	23	1	37.00	0.00	37.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGGGCAT..................................................................................................	20	1	37.00	0.00	1.00	0.00	1.00	35.00
...........................................................................................................TAGCACCATTCGAAATCAGC.................................	20	1	37.00	0.00	37.00	0.00	0.00	0.00
...........................................................................................................TAGCAGCATTCGAAATCAGTGCT..............................	23	1	34.00	0.00	34.00	0.00	0.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTGC...............................	22	1	33.00	0.00	33.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAAAA............................................................................................	26	1	33.00	0.00	2.00	0.00	0.00	31.00
...........................................................................................................TAGCACCATTCGTAATCAGTGT...............................	22	1	33.00	0.00	33.00	0.00	0.00	0.00
...........................................................................................................TAGCACCACTCGAAATCAGTGCT..............................	23	1	32.00	0.00	32.00	0.00	0.00	0.00
.........................................AACTGAGATCGATTGGTGC....................................................................................................	19	1	32.00	0.00	0.00	0.00	0.00	32.00
...........................................................................................................TAGCACCATCCGAAATCAGTGCT..............................	23	1	29.00	0.00	29.00	0.00	0.00	0.00
...........................................................................................................TAGCACCGTTCGAAATCAGTGCT..............................	23	1	29.00	0.00	29.00	0.00	0.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGCGCT..............................	23	1	29.00	0.00	29.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCCTAGA...............................................................................................	23	1	28.00	0.00	2.00	0.00	0.00	26.00
...........................................................................................................TAGCACCATGCGAAATCAGCGC...............................	22	1	28.00	0.00	28.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGGGCATAG................................................................................................	22	1	26.00	0.00	0.00	0.00	0.00	26.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	26.00	0.00	26.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGCT..............................	23	1	26.00	0.00	26.00	0.00	0.00	0.00
..........................................ACTGAGATCGATTGGTGCAG..................................................................................................	20	1	26.00	0.00	0.00	0.00	0.00	26.00
...........................................................................................................TAGCACCATTCGTAATCAGT.................................	20	1	26.00	0.00	26.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTGCT..............................	23	1	25.00	0.00	25.00	0.00	0.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGCGC...............................	22	1	25.00	0.00	25.00	0.00	0.00	0.00
...........................................................................................................TAGCACCAGTCGAAATCAGTGCT..............................	23	1	25.00	0.00	25.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGC...............................	22	1	25.00	0.00	25.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGG...............................	22	1	24.00	0.00	15.00	0.00	0.00	9.00
............................................................................................................AGCACCATTCGAAATCAGTGCT..............................	22	1	24.00	0.00	24.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAACCAGTGCT..............................	23	1	24.00	0.00	24.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCTAAATCAGTGCT..............................	23	1	24.00	0.00	24.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAAATCCGTGCT..............................	23	1	24.00	0.00	24.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTG................................	21	1	23.00	0.00	23.00	0.00	0.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGC...............................	22	1	23.00	0.00	23.00	0.00	0.00	0.00

droMoj3

AA-----ACACCACACCA----------GTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATAACGCC-CAAAAAGTCATT-----TT----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTTTATTGGAACCGATCAACGG--TGTATG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...........................................................................................................TAGCACCATTCGAAATCAGTGCT..............................	23	1	53554.00	208.00	33580.00	19758.00	8.00
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	13361.00	52.00	7125.00	6178.00	6.00
...........................................................................................................TAGCACCATTCGAAATCAGT.................................	20	1	3583.00	52.00	2329.00	1202.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGT...............................	22	1	3504.00	65.00	2226.00	1213.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGA...............................................................................................	23	1	2437.00	230.00	1338.00	861.00	8.00
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	1963.00	12.00	1151.00	799.00	1.00
.........................................AACTGAGATCGATTGGTGCATAGA...............................................................................................	24	1	1832.00	145.00	1051.00	632.00	4.00
.........................................AACTGAGATCGATTGGTGCAT..................................................................................................	21	1	1455.00	70.00	877.00	508.00	0.00
.........................................AACTGAGATCGATTGGTGCATAG................................................................................................	23	1	1237.00	55.00	732.00	450.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTT..............................	23	1	686.00	18.00	463.00	205.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGCT..............................	23	1	501.00	0.00	122.00	379.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGCT..............................	23	1	484.00	0.00	243.00	241.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGCT..............................	23	1	380.00	0.00	119.00	261.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGA...............................	22	1	374.00	0.00	242.00	132.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAG..................................	19	1	368.00	1.00	213.00	154.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGCT..............................	23	1	363.00	0.00	206.00	157.00	0.00
..........................................ACTGAGATCGATTGGTGCATAG................................................................................................	22	1	273.00	14.00	158.00	101.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCA..............................	23	1	252.00	0.00	159.00	93.00	0.00
.........................................AACTGAGATCGATTGGTGCATA.................................................................................................	22	1	152.00	10.00	81.00	61.00	0.00
...........................................................................................................TAGCACCATTCGAAATCCGTGCT..............................	23	1	145.00	0.00	22.00	123.00	0.00
...........................................................................................................TAGCACCATGCGAAATCAGTGCT..............................	23	1	141.00	0.00	116.00	25.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGC...............................	22	1	132.00	0.00	22.00	110.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGCGC...............................	22	1	122.00	0.00	59.00	63.00	0.00
...........................................................................................................TAGCACCATGCGTAATCAGTGCT..............................	23	1	120.00	0.00	93.00	27.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTTCT..............................	23	1	110.00	1.00	28.00	81.00	0.00
...........................................................................................................TAGCACCGTTCGAAATCAGTGCT..............................	23	1	109.00	0.00	66.00	43.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGCT..............................	23	1	108.00	0.00	75.00	33.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGC...............................	22	1	102.00	0.00	21.00	81.00	0.00
...........................................................................................................TAGCACCATTCGAAGTCAGTGCT..............................	23	1	101.00	0.00	62.00	39.00	0.00
...........................................................................................................TAGCACAATTCGAAATCAGTGCT..............................	23	1	97.00	0.00	70.00	27.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTGCT..............................	23	1	97.00	0.00	50.00	47.00	0.00
...........................................................................................................TAGCACCATTAGAAATCAGTGCT..............................	23	1	92.00	1.00	67.00	24.00	0.00
...........................................................................................................TAGCACCATTCGACATCAGTGCT..............................	23	1	89.00	0.00	24.00	65.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTGC...............................	22	1	88.00	0.00	30.00	58.00	0.00
...........................................................................................................CAGCACCATTCGAAATCAGTGCT..............................	23	1	85.00	0.00	55.00	29.00	1.00
...........................................................................................................TGGCACCATTCGAAATCAGTGCT..............................	23	1	83.00	0.00	52.00	31.00	0.00
..........................................................................................................CTAGCACCATTCGAAATCAGTGCT..............................	24	1	82.00	0.00	59.00	23.00	0.00
...........................................................................................................TAGCACCATCCGAAATCAGTGCT..............................	23	1	82.00	0.00	62.00	20.00	0.00
...........................................................................................................TAGCAACATTCGAAATCAGTGCT..............................	23	1	81.00	0.00	57.00	24.00	0.00
.........................................AACTGAGATCGATTGGTGCATAGAA..............................................................................................	25	1	81.00	7.00	46.00	28.00	0.00
..........................................ACTGAGATCGATTGGTGCATA.................................................................................................	21	1	79.00	3.00	38.00	38.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCC..............................	23	1	75.00	0.00	46.00	29.00	0.00
..........................................ACTGAGATCGATTGGTGCAT..................................................................................................	20	1	75.00	4.00	40.00	31.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTTC...............................	22	1	75.00	0.00	21.00	54.00	0.00
...........................................................................................................TAGCACCATTCGAAACCAGTGCT..............................	23	1	73.00	0.00	54.00	19.00	0.00
...........................................................................................................TAGCGCCATTCGAAATCAGTGCT..............................	23	1	73.00	0.00	44.00	29.00	0.00
...........................................................................................................TAGCACCCTTCGAAATCAGTGCT..............................	23	1	73.00	0.00	26.00	47.00	0.00
...........................................................................................................TAGCACCATTCGAAATCGGTGCT..............................	23	1	70.00	1.00	48.00	21.00	0.00
...........................................................................................................TAGCACCATTCGAAATAAGTGCT..............................	23	1	65.00	0.00	48.00	17.00	0.00
...........................................................................................................TAGCACCATTCCAAATCAGTGCT..............................	23	1	65.00	0.00	30.00	35.00	0.00
...........................................................................................................TAGCACTATTCGAAATCAGTGCT..............................	23	1	65.00	0.00	43.00	22.00	0.00
...........................................................................................................TAACACCATTCGAAATCAGTGCT..............................	23	1	63.00	0.00	36.00	27.00	0.00
...........................................................................................................TAGCACCATTCGAAATCATTGCT..............................	23	1	61.00	1.00	35.00	25.00	0.00
.........................................AACTGAGATCGATTGGTGCA...................................................................................................	20	1	60.00	1.00	36.00	23.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGCTT.............................	24	1	60.00	0.00	39.00	21.00	0.00
...........................................................................................................TAGCACCATTCGAGATCAGTGCT..............................	23	1	58.00	1.00	31.00	26.00	0.00
...........................................................................................................TAGCACCATTCGAAATCACTGCT..............................	23	1	58.00	0.00	36.00	22.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGCT..............................	23	1	56.00	0.00	43.00	13.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGAT..............................	23	1	55.00	0.00	36.00	19.00	0.00
...........................................................................................................TAGCACCAGTCGAAATCAGTGCT..............................	23	1	52.00	0.00	37.00	15.00	0.00
............................................................................................................AGCACCATTCGAAATCAGTGCT..............................	22	1	52.00	0.00	32.00	20.00	0.00
...........................................................................................................TAGCACCACTCGAAATCAGTGCT..............................	23	1	50.00	0.00	35.00	15.00	0.00
...........................................................................................................TAGCAGCATTCGAAATCAGTGCT..............................	23	1	50.00	0.00	38.00	12.00	0.00
...........................................................................................................TAGCACCATTCAAAATCAGTGCT..............................	23	1	49.00	0.00	25.00	24.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGTGT...............................	22	1	49.00	0.00	6.00	43.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTTCT..............................	23	1	48.00	0.00	14.00	34.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTGTA..............................	23	1	47.00	1.00	31.00	15.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGT.................................	20	1	46.00	0.00	24.00	22.00	0.00
...........................................................................................................TAGAACCATTCGAAATCAGTGCT..............................	23	1	45.00	0.00	28.00	17.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGGGC...............................	22	1	43.00	0.00	30.00	13.00	0.00
...........................................................................................................AAGCACCATTCGAAATCAGTGCT..............................	23	1	43.00	0.00	32.00	11.00	0.00
...........................................................................................................TAGCAGCATTCGTAATCAGTGCT..............................	23	1	42.00	0.00	34.00	8.00	0.00
...........................................................................................................TAGCACCATTCGCACTCAGTGCT..............................	23	1	41.00	0.00	7.00	34.00	0.00
...........................................................................................................TAGCACCATTCGAAATCCGTGC...............................	22	1	40.00	0.00	1.00	39.00	0.00
...........................................................................................................TCGCACCATTCGAAATCAGTGCT..............................	23	1	40.00	0.00	12.00	28.00	0.00
...........................................................................................................TAGCACCATTCGAAAGCAGTGCT..............................	23	1	40.00	0.00	28.00	12.00	0.00
...........................................................................................................TAGCACCATTCTAAATCAGTGCT..............................	23	1	39.00	0.00	23.00	16.00	0.00
.........................................AACTGAGATCGATTGGTGCATAGT...............................................................................................	24	1	39.00	3.00	26.00	10.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGT...............................................................................................	23	1	37.00	3.00	25.00	9.00	0.00
..........................................ACTGAGATCGATTGGTGCATAGAA..............................................................................................	24	1	37.00	2.00	21.00	14.00	0.00
...........................................................................................................TAGCACCGTTCGTAATCAGTGCT..............................	23	1	35.00	0.00	12.00	23.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTACT..............................	23	1	35.00	0.00	24.00	11.00	0.00
...........................................................................................................TAGCACCATTTGAAATCAGTGCT..............................	23	1	35.00	0.00	21.00	14.00	0.00
...........................................................................................................TAGCACCATTCGAAATCACTGC...............................	22	1	34.00	0.00	22.00	12.00	0.00
...........................................................................................................TATCACCATTCGAAATCAGTGCT..............................	23	1	34.00	0.00	15.00	19.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGTCCT..............................	23	1	34.00	0.00	28.00	6.00	0.00
...........................................................................................................TAGTACCATTCGAAATCAGTGCT..............................	23	1	33.00	0.00	24.00	9.00	0.00
...........................................................................................................TAGCACCATTCGCAATCAGT.................................	20	1	33.00	0.00	6.00	27.00	0.00
.........................................AACTGAGATCGATTGGTGCATAT................................................................................................	23	1	33.00	0.00	19.00	14.00	0.00
...........................................................................................................TAGCACCATTCGACATCAGT.................................	20	1	32.00	0.00	14.00	18.00	0.00
...........................................................................................................TAGCACCATTCGAAATCAGAGC...............................	22	1	32.00	0.00	24.00	7.00	1.00
...........................................................................................................GAGCACCATTCGAAATCAGTGCT..............................	23	1	32.00	0.00	22.00	10.00	0.00
...........................................................................................................TAGCATCATTCGAAATCAGTGCT..............................	23	1	32.00	0.00	21.00	11.00	0.00
...........................................................................................................TAGCACCATTCGAATTCAGTGCT..............................	23	1	30.00	0.00	25.00	5.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGT.................................	20	1	30.00	0.00	4.00	26.00	0.00
...........................................................................................................TAGCACCATTCGAACTCAGTGT...............................	22	1	30.00	0.00	9.00	21.00	0.00
...........................................................................................................TAGCACCATTCGTAATCAGTTC...............................	22	1	29.00	0.00	6.00	23.00	0.00
...........................................................................................................TAGCACCATTCGAAATTAGTGCT..............................	23	1	29.00	0.00	18.00	11.00	0.00
...........................................................................................................TACCACCATTCGAAATCAGTGCT..............................	23	1	29.00	0.00	18.00	11.00	0.00
...........................................................................................................TAGCACCTTTCGAAATCAGTGCT..............................	23	1	29.00	0.00	15.00	14.00	0.00
...........................................................................................................TAGCACCATTCGGAATCAGTGC...............................	22	1	28.00	0.00	8.00	20.00	0.00

droGri2

AT-----GTAGC-AGCCA----------GTTCAAATTGAAGAACTGAGATCGATTGGTGCATAGATATCGTCCAAGA--ATA-AT----TTA----AT-TTCAATTCTAGCACCATTCGAAATCAGTGCTTTGTATTGGAACCGATCAGCGG--CGCATT	Size	Hit Count	Total Norm	V109 Male body
...........................................................................................................TAGCACCATTCGAAATCAGTGC...............................	22	1	2.00	2.00
...........................................................................................................TAGxACCATTCGAAATCAGTGC...............................	21	1	1.00	1.00
...........................................................................................................TAGCACCATTCGAAATCAGTG................................	21	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image								None
UNAFold Image								None

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image																None
UNAFold Image																None