dme-mir-284- Best orthologs

dme-mir-284	chr3R:8377237-8377336 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	three_prime_UTR

Legend:

   mature strand at position 8377249-8377269
   star strand at position 8377302-8377327
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:8377222-8377351 -		1	ATA---------ATCGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATAATGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCTCAACAATG
droSim1	chr3R:13050845-13050974 +	LASTZ	1	ATA---------ACGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCGCAACAATG
droSec1	super_0:13609227-13609356 +	LASTZ	1	ATA---------ATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCGCAACAATG
droYak2	chr3R:12662228-12662357 -	LASTZ	1	ATA---------ATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG
droEre2	scaffold_4770:13275536-13275665 +	LASTZ	1	TTA---------ATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG
droEug1	scf7180000409615:590796-590934 -	LASTZ	4	ATGATGATTACAATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTATTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACGAAG
droBia1	scf7180000302402:52708-52835 -	LASTZ	4	ACA---------ACAGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCCGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TAATCCGCAACAA--
droTak1	scf7180000415366:178200-178329 +	LASTZ	4	ACG---------ATGGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG
droEle1	scf7180000490994:49794-49921 -	LASTZ	4	ACG---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAA--
droRho1	scf7180000779135:15068-15197 +	LASTZ	4	AGG---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAAAG
droFic1	scf7180000453812:740387-740517 +	LASTZ	4	AGTA--------AAAGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAAATTCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATA
droKik1	scf7180000302256:694399-694526 +	LASTZ	4	ATAT--------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCCGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCGCAA-----------------------------------TAATCCGCATC----
droAna3	scaffold_12911:3307955-3308116 -	LASTZ	1	ACA---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG
droBip1	scf7180000396640:173076-173237 -	LASTZ	4	ACA---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG
dp4	chr2:2484958-2485100 -	LASTZ	1	ATC---------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGG-CAAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------
droPer1	super_7:2652948-2653090 -	LASTZ	1	ATC---------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGG-CAAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------
droWil1	scaffold_181130:2186197-2186330 -	LASTZ	1	GTG---------TGTGACAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTTAGGGGAAAGGCTTGAGCATTGCATACTAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCTCAA-----------------------------CGTT---CAACAGTG
droVir3	scaffold_12855:584465-584599 +	LASTZ	1	ATA---------AATGGAAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAAGG-GAAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGGACAACGTTGGAAAGTGTC------------------------------
droMoj3	scaffold_6540:12381805-12381927 -	LASTZ	1	TGT---------AT---TAATTGCGTTGCAGTTCCTGGAATAAAGTTGACTGTGTCGCCTGTAAGGG-GAAGGCTTTTGCATTGCTTACAAAGTCAGCAACTTGATTCCAGCAACTGCGGCC-CAAG---------------------------------------CTCAACGTGG
droGri2	scaffold_14906:1700701-1700824 +	LASTZ	1	ATA-----------TGGAAATTGGGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAGAG-GAAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCT-CAAA---------------------------------------CTCAACGTTG

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	ATA---------ATCGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATAATGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCTCAACAATG
droSim1	ATA---------ACGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCGCAACAATG
droSec1	ATA---------ATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCGCAACAATG
droYak2	ATA---------ATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG
droEre2	TTA---------ATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG
droEug1	ATGATGATTACAATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTATTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACGAAG
droBia1	ACA---------ACAGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCCGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TAATCCGCAACAA--
droTak1	ACG---------ATGGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG
droEle1	ACG---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAA--
droRho1	AGG---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAAAG
droFic1	AGTA--------AAAGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAAATTCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATA
droKik1	ATAT--------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCCGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCGCAA-----------------------------------TAATCCGCATC----
droAna3	ACA---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG
droBip1	ACA---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG
dp4	ATC---------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGG-CAAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------
droPer1	ATC---------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGG-CAAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------
droWil1	GTG---------TGTGACAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTTAGGGGAAAGGCTTGAGCATTGCATACTAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCTCAA-----------------------------CGTT---CAACAGTG
droVir3	ATA---------AATGGAAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAAGG-GAAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGGACAACGTTGGAAAGTGTC------------------------------
droMoj3	TGT---------AT---TAATTGCGTTGCAGTTCCTGGAATAAAGTTGACTGTGTCGCCTGTAAGGG-GAAGGCTTTTGCATTGCTTACAAAGTCAGCAACTTGATTCCAGCAACTGCGGCC-CAAG---------------------------------------CTCAACGTGG
droGri2	ATA-----------TGGAAATTGGGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAGAG-GAAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCT-CAAA---------------------------------------CTCAACGTTG

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

ATA---------ACGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCGCAACAATG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	111259.00	18.00	94052.00	6869.00	10320.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	62496.00	23.00	52569.00	6868.00	3036.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	6840.00	1.00	5989.00	781.00	69.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	4973.00	75.00	4320.00	229.00	349.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	3862.00	0.00	3777.00	71.00	14.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	3762.00	3.00	3080.00	568.00	111.00
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	3735.00	24.00	3579.00	89.00	43.00
.................................CCTGGAATTAAGTTGACTGTGTAGAC.....................................................................................................................	26	1	1985.00	0.00	1702.00	91.00	192.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	1767.00	0.00	1615.00	142.00	10.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	1546.00	0.00	1384.00	149.00	13.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	1225.00	0.00	1118.00	50.00	57.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	910.00	0.00	812.00	85.00	13.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCC....................................................................................................................	27	1	652.00	0.00	582.00	61.00	9.00
.................................CCTGGAATTAAGTTGACTGTGG.........................................................................................................................	22	1	343.00	0.00	312.00	30.00	1.00
.................................CCTGGAATTAAGTTGACTGTTTAGCC.....................................................................................................................	26	1	322.00	0.00	295.00	7.00	20.00
.................................CCTGGAATTAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	318.00	0.00	259.00	25.00	34.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	314.00	0.00	283.00	28.00	3.00
.................................CCTGGAATTAAGTTGACTGTGC.........................................................................................................................	22	1	302.00	0.00	284.00	17.00	1.00
.................................CCTGGAATTAAGTTGACTTTGTAGCC.....................................................................................................................	26	1	275.00	0.00	246.00	9.00	20.00
.................................CCTGGAATTAAGTTGACxxTGTAGCC.....................................................................................................................	24	1	261.00	0.00	230.00	13.00	18.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	258.00	0.00	245.00	9.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCG....................................................................................................................	27	1	250.00	0.00	217.00	29.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	241.00	0.00	200.00	31.00	10.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	224.00	0.00	162.00	59.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTGG.......................................................................................................................	24	1	183.00	0.00	148.00	28.00	7.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	179.00	0.00	153.00	25.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTCGC......................................................................................................................	25	1	175.00	0.00	150.00	14.00	11.00
.................................CCTTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	160.00	0.00	134.00	5.00	21.00
.................................CCTGGAATTAGGTTGACTGTGTAGCC.....................................................................................................................	26	1	153.00	0.00	141.00	10.00	2.00
.................................CCTGGAATTAAGTTGACTGTxTAGCC.....................................................................................................................	25	1	146.00	0.00	116.00	11.00	19.00
.................................CCTGGAATTAAGTTGACTGTGTAGG......................................................................................................................	25	1	142.00	1.00	108.00	21.00	12.00
.................................CCTGGAATTAATTTGACTGTGTAGCC.....................................................................................................................	26	1	137.00	1.00	125.00	4.00	7.00
.................................CCTGAAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	131.00	0.00	115.00	7.00	9.00
............................................................................................GTCAGCAACTTGATTCCAGCG...............................................................	21	1	131.00	0.00	125.00	5.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	124.00	0.00	102.00	15.00	7.00
.................................CCTGGAATTAAGTTGACTCTGTAGCC.....................................................................................................................	26	1	117.00	1.00	104.00	3.00	9.00
.................................CCTGGAATTAAGTTGACTGTGTAAC......................................................................................................................	25	1	117.00	0.00	98.00	13.00	6.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	115.00	0.00	99.00	6.00	10.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	115.00	0.00	104.00	9.00	2.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	114.00	0.00	105.00	6.00	3.00
.......................................ATTAAGTTGACTGTGTAGCC.....................................................................................................................	20	1	111.00	0.00	88.00	11.00	12.00
.................................CCTGGAATTAAGTTGACTGTTTAGC......................................................................................................................	25	1	92.00	0.00	83.00	6.00	3.00
.................................CCTGGAATTAAGTTGACTGTCTAGCC.....................................................................................................................	26	1	91.00	0.00	75.00	0.00	16.00
.................................CCTGGAATTAAGTTGACTGTGTAA.......................................................................................................................	24	1	85.00	0.00	81.00	4.00	0.00
............................................................................................GTCAGCAACTTxATTCCAGC................................................................	19	1	84.00	0.00	82.00	2.00	0.00
.................................CCTTGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	80.00	0.00	64.00	12.00	4.00
.................................CCTGGAATTAAGTTGGCTGTGTAGCC.....................................................................................................................	26	1	80.00	0.00	69.00	2.00	9.00
.................................CCTGGAATTAAGTTGACTGCGTAGCC.....................................................................................................................	26	1	80.00	0.00	68.00	4.00	8.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	79.00	0.00	69.00	7.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCTT...................................................................................................................	28	1	77.00	0.00	50.00	26.00	1.00
.................................CCTGGAATTAAGCTGACTGTGTAGCC.....................................................................................................................	26	1	75.00	0.00	62.00	8.00	5.00
.................................CCTCGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	74.00	0.00	63.00	2.00	9.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	68.00	0.00	67.00	0.00	1.00
............................................................................................GTCAGCAACTTTATTCCAGC................................................................	20	1	67.00	0.00	67.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGCGTAGC......................................................................................................................	25	1	63.00	0.00	55.00	5.00	3.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	61.00	0.00	55.00	3.00	3.00
.................................CCTGGAATTAAGTTGGCTGTGTAGC......................................................................................................................	25	1	58.00	0.00	55.00	2.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTAGT......................................................................................................................	25	1	57.00	0.00	51.00	5.00	1.00
..................................CCTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	57.00	0.00	47.00	2.00	8.00
.................................CCTGGGATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	57.00	1.00	49.00	5.00	2.00
............................................................................................GTCAGCAACTTGATTCCAGCAG..............................................................	22	1	56.00	1.00	50.00	1.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTGGCC.....................................................................................................................	26	1	54.00	0.00	45.00	4.00	5.00
.................................CCTGGAATTAAGTTGACTGTGTGAC......................................................................................................................	25	1	54.00	0.00	54.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTxTGTAGCC.....................................................................................................................	25	1	54.00	0.00	53.00	1.00	0.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	54.00	0.00	48.00	3.00	3.00
.................................CCTGGAATTAAGTTGACTGGGTAGCC.....................................................................................................................	26	1	53.00	0.00	45.00	3.00	5.00
.................................CCTGGAATTAAGTTGACTGTGTT........................................................................................................................	23	1	52.00	0.00	48.00	4.00	0.00
.................................CCCGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	52.00	0.00	42.00	5.00	5.00
.................................CCTCGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	50.00	0.00	45.00	2.00	3.00
.................................CCTGGAATTAAGTTGACCGTGTAGCC.....................................................................................................................	26	1	45.00	0.00	36.00	4.00	5.00
.......................................ATTAAGTTGACTGTGTAGC......................................................................................................................	19	1	45.00	0.00	37.00	4.00	4.00
.................................CCCGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	45.00	0.00	39.00	5.00	1.00
.................................CCTGGAATTAAGTTGACTGTAG.........................................................................................................................	22	1	44.00	0.00	40.00	2.00	2.00
.................................CCTGGAATTAGGTTGACTGTGTAGC......................................................................................................................	25	1	44.00	0.00	38.00	6.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	43.00	0.00	42.00	1.00	0.00
......................................AATTAAGTTGACTGTGTAGCC.....................................................................................................................	21	1	42.00	0.00	38.00	2.00	2.00
........................................TTAAGTTGACTGTGTAGCC.....................................................................................................................	19	1	42.00	0.00	31.00	3.00	8.00
..................................CCTGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	41.00	0.00	34.00	4.00	3.00
.................................CCTGGAATTAAGTTGACTGGGTAGC......................................................................................................................	25	1	40.00	0.00	33.00	5.00	2.00
.................................CCTGGAATTAAGTTTACTGTGTAGCC.....................................................................................................................	26	1	39.00	1.00	29.00	2.00	7.00
.................................CCTGGAATTAAGCTGACTGTGTAGC......................................................................................................................	25	1	39.00	0.00	29.00	7.00	3.00
.................................TCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	38.00	0.00	33.00	1.00	4.00
.................................CCTGGAATTAAGTTGACTGTATAGCC.....................................................................................................................	26	1	38.00	0.00	34.00	1.00	3.00
.................................CCTGGAATTAAGTTGACT.............................................................................................................................	18	1	38.00	0.00	35.00	2.00	1.00
............................................................................................GTCAGCAACTTCATTCCAGC................................................................	20	1	37.00	0.00	37.00	0.00	0.00
.................................CCTGGAATTAAGTCGACTGTGTAGCC.....................................................................................................................	26	1	37.00	0.00	31.00	2.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTGGC......................................................................................................................	25	1	37.00	0.00	30.00	6.00	1.00
.................................CCTGGAATTAAGTTGACTATGTAGCC.....................................................................................................................	26	1	36.00	0.00	28.00	5.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTAGCG.....................................................................................................................	26	1	36.00	0.00	29.00	5.00	2.00
.................................CCTGGAATTAAGTTGACTGTGTAGTC.....................................................................................................................	26	1	36.00	0.00	32.00	2.00	2.00
.................................CCTGGAATTAAGTTGACTGG...........................................................................................................................	20	1	36.00	0.00	34.00	1.00	1.00
.................................CCTGGAATTAAGTTAACTGTGTAGCC.....................................................................................................................	26	1	36.00	0.00	30.00	3.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTAGCTT....................................................................................................................	27	1	35.00	0.00	31.00	3.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	34.00	0.00	28.00	1.00	5.00
.................................CCTGGAATTAAGTTGACTTTGTAGC......................................................................................................................	25	1	33.00	0.00	28.00	4.00	1.00
.................................CCTGGAATTAAGTTGACTGTCTAGC......................................................................................................................	25	1	32.00	0.00	29.00	1.00	2.00
............................................................................................GTCAGCAACTTxATTCCAGCAA..............................................................	21	1	32.00	0.00	28.00	1.00	3.00
.............................AGTTCCTGGAATTAAGTTGACTG............................................................................................................................	23	1	31.00	0.00	10.00	0.00	21.00
.................................CCTGTAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	31.00	0.00	23.00	5.00	3.00
............................................................................................GTCAGCAACTTxATTCCAGCA...............................................................	20	1	30.00	0.00	29.00	0.00	1.00
.................................CCTGGAATTAAGTTGACTTTGTAG.......................................................................................................................	24	1	30.00	0.00	26.00	3.00	1.00

droSec1

ATA---------ATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAATACTGCTCCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CGA-----------------------------------TATTCCGCAACAATG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	7381.00	282.00	120.00	6979.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	3910.00	490.00	549.00	2871.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	3624.00	907.00	609.00	2108.00
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	2680.00	503.00	908.00	1269.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	454.00	174.00	51.00	229.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	199.00	51.00	5.00	143.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	180.00	60.00	6.00	114.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	170.00	25.00	2.00	143.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	164.00	38.00	3.00	123.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	118.00	13.00	4.00	101.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	111.00	3.00	1.00	107.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	78.00	10.00	8.00	60.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	70.00	29.00	3.00	38.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	60.00	0.00	0.00	60.00
..............GGGTAATTGCGTTGCAGTT...............................................................................................................................................	19	1	51.00	6.00	18.00	27.00
.............TGGGTAATTGCGTTGCAGTT...............................................................................................................................................	20	1	48.00	3.00	24.00	21.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	46.00	3.00	0.00	43.00
.............................................................................................TCAGCAACTTGATTCCAGCA...............................................................	20	1	39.00	0.00	0.00	39.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	32.00	7.00	7.00	18.00
.............................................................................................TCAGCAACTTGATTCCAGCAA..............................................................	21	1	27.00	6.00	2.00	19.00
............................................................................................GTCAGCAACTTGATTCCAGT................................................................	20	1	27.00	1.00	0.00	26.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	27.00	1.00	1.00	25.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	25.00	4.00	10.00	11.00
............................................................................................GTCAGCAACTTGATTCCAGCTT..............................................................	22	1	24.00	1.00	0.00	23.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	20.00	3.00	0.00	17.00
............ATGGGTAATTGCGTTGCAGTT...............................................................................................................................................	21	1	19.00	4.00	6.00	9.00
............................................................................................GTCAGCAACTTGATTCCAACA...............................................................	21	1	15.00	1.00	0.00	14.00
............................................................................................TTCAGCAACTTGATTCCAGCA...............................................................	21	1	15.00	0.00	1.00	14.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	15.00	5.00	2.00	8.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	14.00	9.00	0.00	5.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	13.00	0.00	0.00	13.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCTT...................................................................................................................	28	1	13.00	13.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCATT.............................................................	23	1	13.00	0.00	0.00	13.00
............................................................................................ATCAGCAACTTGATTCCAGCA...............................................................	21	1	12.00	1.00	1.00	10.00
...............................................................................................AGCAACTTGATTCCAGCA...............................................................	18	1	12.00	0.00	1.00	11.00
.................................CCTGGAATTAAGTTGACTATGTAGC......................................................................................................................	25	1	11.00	5.00	0.00	6.00
............................................................................................GTCAGCAAATTGATTCCAGCA...............................................................	21	1	11.00	1.00	1.00	9.00
............................................................................................GTCAGCAACTTGATTCCAGCAAAA............................................................	24	1	11.00	0.00	2.00	9.00
............................................................................................GTCATCAACTTGATTCCAGCA...............................................................	21	1	11.00	1.00	0.00	10.00
............................................................................................GTCAGCAGCTTGATTCCAGCA...............................................................	21	1	9.00	0.00	1.00	8.00
............................................................................................TTCAGCAACTTGATTCCAGCAA..............................................................	22	1	9.00	0.00	0.00	9.00
............................................................................................ATCAGCAACTTGATTCCAGCAA..............................................................	22	1	9.00	1.00	3.00	5.00
............................................................................................GTCAGCAACTTGATTCCATCAA..............................................................	22	1	9.00	4.00	0.00	5.00
............................................................................................GTCAGCAACTTGATTCCAACAA..............................................................	22	1	9.00	5.00	0.00	4.00
.................................CCTGGAATTAAGTTGACTGCGTAGC......................................................................................................................	25	1	9.00	3.00	2.00	4.00
............................................................................................GTCGGCAACTTGATTCCAGCA...............................................................	21	1	9.00	0.00	0.00	9.00
...........................................................................................CGTCAGCAACTTGATTCCAGCA...............................................................	22	1	9.00	1.00	0.00	8.00
.................................CCTGGAATTAAGTTGACTGTGTAGT......................................................................................................................	25	1	8.00	3.00	2.00	3.00
.................................CCTGGAATTAAGTTGACxxTGTAGCC.....................................................................................................................	24	1	8.00	0.00	4.00	4.00
............................................................................................GTCAGCAACTTGATTCCAA.................................................................	19	1	8.00	1.00	0.00	7.00
.................................CCTGGAATTAAGTTGACTGTGTT........................................................................................................................	23	1	8.00	2.00	0.00	6.00
............................................................................................GTCACCAACTTGATTCCAGCA...............................................................	21	1	8.00	0.00	0.00	8.00
............................................................................................GTCAGCAACTTGGTTCCAGCA...............................................................	21	1	8.00	0.00	1.00	7.00
............................................................................................GTCAGCAACTTGATTCCGGCAA..............................................................	22	1	8.00	0.00	1.00	7.00
............................................................................................GTCAGCAACTTGATCCCAGCA...............................................................	21	1	8.00	1.00	0.00	7.00
.................................CCTGGAATTAAGTTGATTGTGTAGCC.....................................................................................................................	26	1	7.00	0.00	7.00	0.00
............................................................................................GTCATCAACTTGATTCCAGCAA..............................................................	22	1	7.00	0.00	1.00	6.00
............................................................................................GTCAGCAACTTGATTCCACCAA..............................................................	22	1	7.00	6.00	0.00	1.00
.................................CCTTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	7.00	1.00	2.00	4.00
............................................................................................GTCAGCAACTTGATTCCATCA...............................................................	21	1	7.00	1.00	0.00	6.00
.................................TCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	7.00	1.00	3.00	3.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	7.00	1.00	1.00	5.00
............................................................................................GTCAGCAACTTGATTCCACCA...............................................................	21	1	7.00	1.00	0.00	6.00
............................................................................................GTCAGCAACCTGATTCCAGCA...............................................................	21	1	7.00	1.00	0.00	6.00
.................................................................................................CAACTTGATTCCAGCAATTGCG.........................................................	22	1	7.00	0.00	3.00	4.00
...............................................................................................AGCAACTTGATTCCAGCAA..............................................................	19	1	7.00	0.00	1.00	6.00
.................................CCTGGAATTAAGTTGACTGTGA.........................................................................................................................	22	1	6.00	4.00	0.00	2.00
............................................................................................GTCAGCAACTTxATTCCAGCA...............................................................	20	1	6.00	1.00	0.00	5.00
.................................CCTGGAATTAAGTTGACTGTTTAGC......................................................................................................................	25	1	6.00	1.00	1.00	4.00
.................................CCTGGAATTAAGCTGACTGTGTAGC......................................................................................................................	25	1	6.00	0.00	4.00	2.00
.............................AGTTCCTGGAATTAAGTTGACT.............................................................................................................................	22	1	6.00	2.00	0.00	4.00
............................................................................................GTCAGCAACTTGATTCAAGCA...............................................................	21	1	6.00	0.00	1.00	5.00
.................................CCTGGAATTAAGTTGACTCTGTAGCC.....................................................................................................................	26	1	6.00	4.00	1.00	1.00
............................................................................................GTCAGAAACTTGATTCCAGCA...............................................................	21	1	6.00	0.00	0.00	6.00
............................................................................................GCCAGCAACTTGATTCCAGCA...............................................................	21	1	6.00	0.00	0.00	6.00
............................................................................................GCCAGCAACTTGATTCCAGCAA..............................................................	22	1	6.00	2.00	0.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	6.00	1.00	1.00	4.00
............................................................................................GTCAGCGACTTGATTCCAGCA...............................................................	21	1	6.00	0.00	0.00	6.00
............................................................................................GTCAGCAACTTGACTCCAGCA...............................................................	21	1	6.00	1.00	0.00	5.00
............................................................................................GTCAGCAACTTGCTTCCAGCA...............................................................	21	1	6.00	1.00	0.00	5.00
............................................................................................GTCAGCAACTTGATTCCGGCA...............................................................	21	1	6.00	0.00	1.00	5.00
.................................CCTGGGATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	6.00	0.00	6.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGTA...............................................................	21	1	5.00	0.00	0.00	5.00
...........................................................................................CGTCAGCAACTTGATTCCAGCAA..............................................................	23	1	5.00	0.00	0.00	5.00
.................................CCTGGAATTAAGTTGACTATGTAGCC.....................................................................................................................	26	1	5.00	4.00	0.00	1.00
............................................................................................GTCAGCAACTTGATTCCCGCA...............................................................	21	1	5.00	0.00	0.00	5.00
.................................CCTGGAATTAAGTTCACTGTGTAGC......................................................................................................................	25	1	5.00	1.00	1.00	3.00
............................................................................................GTCAGCAACTTGACTCCAGCAA..............................................................	22	1	5.00	1.00	0.00	4.00
.................................CCTGGAATTAAGTTAACTGTGTAGCC.....................................................................................................................	26	1	5.00	2.00	2.00	1.00
............................................................................................GTCAGCAACTCGATTCCAGCA...............................................................	21	1	5.00	0.00	0.00	5.00
............................................................................................GTCAGCAACTTGATTCCA..................................................................	18	1	5.00	0.00	0.00	5.00
.................................CCTGGAATTAAGTTGACTGCGTAGCC.....................................................................................................................	26	1	5.00	2.00	1.00	2.00
............................................................................................GTCAGCAATTTGATTCCAGCA...............................................................	21	1	5.00	0.00	1.00	4.00
............................................................................................CTCAGCAACTTGATTCCAGCA...............................................................	21	1	5.00	0.00	0.00	5.00
.................................CCTGGAATTAAGTTGACTTTGTAGCC.....................................................................................................................	26	1	5.00	4.00	0.00	1.00
..............................................................................................CAGCAACTTGATTCCAGCAA..............................................................	20	1	5.00	1.00	2.00	2.00
...............................................................................................GTCAACTTGATTCCAGCA...............................................................	18	2	2.50	0.00	0.00	2.50
.................................CCTGGAATTAAGTTGACTGTGCAGC......................................................................................................................	25	1	5.00	2.00	0.00	3.00
..................................CCTGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	5.00	0.00	2.00	3.00
..............................................................................................CAGCAACTTGATTCCAGCA...............................................................	19	1	5.00	0.00	0.00	5.00
............................................................................................GTCAGCAACTTGATTCTAGCAA..............................................................	22	1	5.00	1.00	1.00	3.00

droYak2

ATA---------ATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	24887.00	13.00	144.00	110.00	418.00	24202.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	18693.00	13.00	187.00	306.00	610.00	17577.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	3489.00	71.00	578.00	243.00	1138.00	1459.00
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	3104.00	32.00	732.00	98.00	1383.00	859.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	1346.00	1.00	40.00	47.00	164.00	1094.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	1133.00	0.00	15.00	2.00	37.00	1079.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	1075.00	0.00	0.00	6.00	24.00	1045.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	636.00	0.00	9.00	2.00	53.00	572.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	507.00	0.00	31.00	20.00	117.00	339.00
.................................CCTGGAATTAAGTTGACTGTGTAGAC.....................................................................................................................	26	1	505.00	0.00	0.00	0.00	0.00	505.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	312.00	0.00	0.00	1.00	1.00	310.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	153.00	0.00	1.00	3.00	1.00	148.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	140.00	0.00	26.00	5.00	78.00	31.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCC....................................................................................................................	27	1	134.00	0.00	0.00	0.00	1.00	133.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	131.00	1.00	25.00	13.00	36.00	56.00
.................................CCTGGAATTAAGTTGACTGTTTAGCC.....................................................................................................................	26	1	102.00	0.00	1.00	0.00	2.00	99.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	96.00	1.00	14.00	8.00	39.00	34.00
.................................CCTGGAATTAAGTTGACTTTGTAGCC.....................................................................................................................	26	1	93.00	0.00	0.00	0.00	4.00	89.00
..............GGGTGATTGCGTTGCAGTT...............................................................................................................................................	19	1	88.00	8.00	23.00	10.00	43.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	82.00	0.00	7.00	6.00	19.00	50.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	68.00	0.00	3.00	0.00	9.00	56.00
.................................CCTGGAATTAAGTTGACTGTGC.........................................................................................................................	22	1	65.00	0.00	0.00	0.00	0.00	65.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	61.00	0.00	16.00	0.00	21.00	24.00
.................................CCTGGAATTAAGTTGACTGTGG.........................................................................................................................	22	1	59.00	0.00	0.00	0.00	0.00	59.00
.................................CCTGGAATTAAGTTGACTGTGTGG.......................................................................................................................	24	1	55.00	0.00	0.00	0.00	1.00	54.00
.................................CCTGGAATTAATTTGACTGTGTAGCC.....................................................................................................................	26	1	52.00	0.00	0.00	0.00	0.00	52.00
.................................CCTGGAATTAAGTTGACTGTTTAGC......................................................................................................................	25	1	46.00	0.00	4.00	0.00	10.00	32.00
............................................................................................GTCAGCAACTTGATTCCAGCCA..............................................................	22	1	46.00	1.00	16.00	1.00	24.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCG....................................................................................................................	27	1	46.00	0.00	0.00	0.00	0.00	46.00
.................................CCTGGAATTAAGTTGACTGTGTAAC......................................................................................................................	25	1	44.00	0.00	0.00	0.00	0.00	44.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCTT...................................................................................................................	28	1	44.00	0.00	0.00	0.00	1.00	43.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	44.00	0.00	0.00	2.00	3.00	39.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	43.00	1.00	5.00	0.00	26.00	11.00
...............GGTGATTGCGTTGCAGTT...............................................................................................................................................	18	1	39.00	5.00	12.00	1.00	20.00	1.00
.................................CCTGGAATTAAGTTGACxxTGTAGCC.....................................................................................................................	24	1	38.00	0.00	0.00	0.00	0.00	38.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	36.00	0.00	1.00	2.00	7.00	26.00
.................................CCTGGAATTAAGTTGACTGTxTAGCC.....................................................................................................................	25	1	35.00	0.00	0.00	0.00	0.00	35.00
.................................CCTGAAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	35.00	0.00	0.00	0.00	0.00	35.00
.................................CCTGGAATTAAGTTGACTGGGTAGCC.....................................................................................................................	26	1	34.00	0.00	0.00	0.00	0.00	34.00
.................................CCTGGAATTAAGTTGACTGTGTATC......................................................................................................................	25	1	34.00	0.00	8.00	1.00	25.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAA.......................................................................................................................	24	1	33.00	0.00	1.00	1.00	3.00	28.00
............................................................................................GTCAGCAACTTGCTTCCAGCA...............................................................	21	1	32.00	0.00	7.00	0.00	25.00	0.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	29.00	0.00	2.00	0.00	1.00	26.00
............................................................................................GTCAGCAACTTGATTCCAGCG...............................................................	21	1	29.00	0.00	1.00	0.00	4.00	24.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	29.00	0.00	5.00	1.00	5.00	18.00
.................................CCTTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	28.00	0.00	0.00	0.00	0.00	28.00
.................................CCTGGAATTAAGTTGACTGTGCAGC......................................................................................................................	25	1	28.00	0.00	0.00	1.00	8.00	19.00
.................................CCTCGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	28.00	0.00	0.00	0.00	0.00	28.00
............................................................................................GTCAGCAACTTGATTCCAGCAG..............................................................	22	1	27.00	0.00	1.00	0.00	3.00	23.00
.................................CCTGGAATTAAGTTGACTGTGTAGG......................................................................................................................	25	1	27.00	1.00	0.00	0.00	0.00	26.00
.................................CCTGGAATTAAGTTGACTGCGTAGCC.....................................................................................................................	26	1	26.00	0.00	0.00	0.00	2.00	24.00
.......................................ATTAAGTTGACTGTGTAGCC.....................................................................................................................	20	1	26.00	0.00	0.00	1.00	0.00	25.00
.................................CCTTGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	25.00	0.00	0.00	0.00	1.00	24.00
.................................CCTGGAATTAAGTTGACTGCGTAGC......................................................................................................................	25	1	25.00	1.00	0.00	0.00	0.00	24.00
.................................CCTGGAATTAAGTTGACTGGGTAGC......................................................................................................................	25	1	25.00	0.00	0.00	0.00	1.00	24.00
............................................................................................GGCAGCAACTTGATTCCAGCA...............................................................	21	1	25.00	0.00	3.00	0.00	21.00	1.00
.................................CCTGGGATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	24.00	0.00	2.00	0.00	15.00	7.00
.................................CCTGGAATTAAGTTGGCTGTGTAGC......................................................................................................................	25	1	24.00	0.00	0.00	1.00	2.00	21.00
.................................CCTGGAATTAAGTTGACTTTGTAGC......................................................................................................................	25	1	23.00	0.00	0.00	1.00	1.00	21.00
.................................CCTGGAATTAAGTTGACTTTGTAG.......................................................................................................................	24	1	23.00	0.00	0.00	1.00	1.00	21.00
.................................CCTGGAATTAAGTTGACTGTGTAC.......................................................................................................................	24	1	23.00	0.00	0.00	0.00	1.00	22.00
............................................................................................GTCAGCAACTTxATTCCAGC................................................................	19	1	22.00	0.00	0.00	0.00	0.00	22.00
............................................................................................GTCAGCAACTTGATTCCCGCA...............................................................	21	1	22.00	0.00	4.00	0.00	18.00	0.00
............................................................................................GTCAGCAACTTGATTCCCGCAA..............................................................	22	1	21.00	0.00	5.00	0.00	15.00	1.00
.................................CCTGGAATTAAGTTGACTGTCTAGCC.....................................................................................................................	26	1	21.00	0.00	0.00	0.00	0.00	21.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	21.00	0.00	0.00	1.00	1.00	19.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	20.00	0.00	0.00	0.00	3.00	17.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	20.00	0.00	0.00	2.00	0.00	18.00
.................................CCTGCAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	20.00	0.00	0.00	0.00	0.00	20.00
.................................CCTGGAATTAAGTTGACTGTGTGAC......................................................................................................................	25	1	19.00	0.00	0.00	0.00	0.00	19.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	19.00	0.00	2.00	0.00	13.00	4.00
............................................................................................GTCAGCAACTTGATTCCATCA...............................................................	21	1	18.00	0.00	4.00	0.00	13.00	1.00
............................................................................................GTCAGCAACTTTATTCCAGC................................................................	20	1	18.00	0.00	0.00	0.00	0.00	18.00
.................................CCTGGACTTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	18.00	0.00	1.00	0.00	2.00	15.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCA....................................................................................................................	27	1	17.00	0.00	0.00	0.00	1.00	16.00
.................................CCTGGAATTAAGTTGGCTGTGTAGCC.....................................................................................................................	26	1	17.00	0.00	0.00	0.00	0.00	17.00
.................................CCTCGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	17.00	0.00	0.00	0.00	0.00	17.00
............................................................................................GTCAGCAACTTGCTTCCAGCAA..............................................................	22	1	17.00	0.00	0.00	0.00	17.00	0.00
.............TGGGTGATTGCGTTGCAGTT...............................................................................................................................................	20	1	17.00	1.00	7.00	6.00	3.00	0.00
.................................CCTGGCATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	17.00	1.00	0.00	0.00	10.00	6.00
.................................CCTGGAATTAAGTTTACTGTGTAGCC.....................................................................................................................	26	1	16.00	0.00	0.00	0.00	0.00	16.00
......................................AATTAAGTTGACTGTGTAGCC.....................................................................................................................	21	1	16.00	0.00	0.00	0.00	1.00	15.00
.................................CCTGGAATTAAGTTGACTCTGTAGCC.....................................................................................................................	26	1	16.00	0.00	0.00	0.00	1.00	15.00
.......................................ATTAAGTTGACTGTGTAGC......................................................................................................................	19	1	16.00	0.00	0.00	2.00	0.00	14.00
............................................................................................GTCAGCAACTTGATTCCAGCACC.............................................................	23	1	16.00	0.00	0.00	0.00	0.00	16.00
............................................................................................GGCAGCAACTTGATTCCAGCAA..............................................................	22	1	16.00	0.00	3.00	0.00	13.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAATT............................................................	24	1	16.00	0.00	1.00	0.00	0.00	15.00
...............................................................................................AGCAACTTGATTCCAGCA...............................................................	18	1	16.00	0.00	6.00	0.00	10.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTGGCC.....................................................................................................................	26	1	15.00	0.00	0.00	0.00	0.00	15.00
.................................CCCGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	15.00	0.00	0.00	0.00	0.00	15.00
.................................CCCGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	15.00	0.00	0.00	0.00	2.00	13.00
..................................CCTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	14.00	0.00	0.00	0.00	0.00	14.00
............................................................................................GCCAGCAACTTGATTCCAGCA...............................................................	21	1	14.00	0.00	2.00	0.00	12.00	0.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	14.00	0.00	1.00	0.00	4.00	9.00
.................................CCTGGAATTAAGTTGACTGTCTAGC......................................................................................................................	25	1	13.00	0.00	0.00	0.00	1.00	12.00
.................................CCTGGAATTAAGTTGACTGTGTAGTC.....................................................................................................................	26	1	13.00	1.00	1.00	0.00	2.00	9.00
................................TCCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	26	1	13.00	0.00	0.00	0.00	1.00	12.00
.................................CCTGGAATTAAGTTGACTGTATAGCC.....................................................................................................................	26	1	13.00	0.00	1.00	1.00	0.00	11.00
.................................CCTGGAATTAAGCTGACTGTGTAGC......................................................................................................................	25	1	13.00	0.00	0.00	1.00	1.00	11.00
.................................CCTGGAATTAAGTTGACTGTGTAT.......................................................................................................................	24	1	13.00	0.00	2.00	0.00	5.00	6.00
.................................CCTGGAATTAAGTTGACTGTGTAGT......................................................................................................................	25	1	12.00	1.00	2.00	0.00	1.00	8.00

droEre2

TTA---------ATGGGTGATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	12389.00	66.00	1027.00	0.00	11296.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	5389.00	143.00	941.00	0.00	4305.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	3556.00	43.00	304.00	0.00	3209.00
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	2834.00	29.00	210.00	0.00	2595.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	553.00	0.00	94.00	0.00	459.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	499.00	1.00	79.00	0.00	419.00
...............GGTGATTGCGTTGCAGTT...............................................................................................................................................	18	1	219.00	13.00	5.00	0.00	201.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	213.00	3.00	22.00	0.00	188.00
..............GGGTGATTGCGTTGCAGTT...............................................................................................................................................	19	1	204.00	8.00	25.00	0.00	171.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	178.00	0.00	33.00	0.00	145.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	161.00	0.00	8.00	0.00	153.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	128.00	3.00	28.00	0.00	97.00
............................................................................................GTCAGAAACTTGATTCCAGCA...............................................................	21	1	110.00	0.00	0.00	0.00	110.00
............................................................................................GTCAGCAACTTGATTCCATCA...............................................................	21	1	100.00	1.00	12.00	0.00	87.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	95.00	1.00	29.00	0.00	65.00
............................................................................................GTCATCAACTTGATTCCAGCA...............................................................	21	1	88.00	0.00	1.00	0.00	87.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	83.00	1.00	27.00	0.00	55.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	81.00	0.00	6.00	0.00	75.00
............................................................................................GTCAGCAACTTTATTCCAGCA...............................................................	21	1	80.00	0.00	1.00	0.00	79.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	77.00	0.00	3.00	0.00	74.00
............................................................................................GTAAGCAACTTGATTCCAGCA...............................................................	21	1	71.00	0.00	2.00	0.00	69.00
............................................................................................GTCAGCAACTTGATTCAAGCA...............................................................	21	1	62.00	0.00	1.00	0.00	61.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	60.00	0.00	25.00	0.00	35.00
.................................CATGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	58.00	0.00	0.00	0.00	58.00
............................................................................................GTCAGAAACTTGATTCCAGCAA..............................................................	22	1	49.00	0.00	0.00	0.00	49.00
.................................CCTGGAATTAAGTTGACTGTGTCGC......................................................................................................................	25	1	47.00	0.00	0.00	0.00	47.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	47.00	0.00	6.00	0.00	41.00
............................................................................................GTCAGCAACTTGATTCCATCAA..............................................................	22	1	46.00	4.00	7.00	0.00	35.00
............................................................................................GTCAGCAACTTGATTCCAGAA...............................................................	21	1	45.00	0.00	2.00	0.00	43.00
............................................................................................GTCAGCAACTTGATTACAGCA...............................................................	21	1	45.00	0.00	2.00	0.00	43.00
.................................CATGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	44.00	0.00	0.00	0.00	44.00
............................................................................................TTCAGCAACTTGATTCCAGCA...............................................................	21	1	41.00	0.00	1.00	0.00	40.00
.............................................................................................TCAGCAACTTGATTCCAGCA...............................................................	20	1	39.00	0.00	1.00	0.00	38.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	36.00	0.00	7.00	0.00	29.00
.................................CCTGGAATTAAGTTGACTGTGTTGC......................................................................................................................	25	1	35.00	0.00	0.00	0.00	35.00
...............................................................................................AGCAACTTGATTCCAGCA...............................................................	18	1	34.00	0.00	2.00	0.00	32.00
.................................ACTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	32.00	0.00	0.00	0.00	32.00
............................................................................................GTCAGCAAATTGATTCCAGCA...............................................................	21	1	32.00	0.00	1.00	0.00	31.00
.................................CCTGGAATTAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	32.00	0.00	1.00	0.00	31.00
............................................................................................GTCAGCAACTTTATTCCAGCAA..............................................................	22	1	31.00	0.00	0.00	0.00	31.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	31.00	2.00	5.00	0.00	24.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	31.00	2.00	1.00	0.00	28.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	30.00	0.00	1.00	0.00	29.00
............................................................................................GTCATCAACTTGATTCCAGCAA..............................................................	22	1	30.00	0.00	0.00	0.00	30.00
............................................................................................GTCAGCAACTTGCTTCCAGCA...............................................................	21	1	30.00	0.00	8.00	0.00	22.00
.................................CCTGGAATTAAGTTGACTGTGTATC......................................................................................................................	25	1	29.00	2.00	9.00	0.00	18.00
............................................................................................GTAAGCAACTTGATTCCAGCAA..............................................................	22	1	28.00	1.00	0.00	0.00	27.00
.................................CCTGGAATTAAGTTTACTGTGTAGC......................................................................................................................	25	1	28.00	0.00	1.00	0.00	27.00
............................................................................................GCCAGCAACTTGATTCCAGCA...............................................................	21	1	28.00	0.00	4.00	0.00	24.00
.................................CCTTGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	27.00	0.00	0.00	0.00	27.00
.................................CCTTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	27.00	0.00	0.00	0.00	27.00
............................................................................................GTCAGCAACTTGATTACAGCAA..............................................................	22	1	26.00	0.00	3.00	0.00	23.00
.................................ACTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	26.00	0.00	0.00	0.00	26.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	25.00	0.00	9.00	0.00	16.00
.................................CCTGGAATTAAGTTGACTGTGTGGC......................................................................................................................	25	1	24.00	0.00	0.00	0.00	24.00
.................................CCTGGAATTAAGTTGACTGTGTGGCC.....................................................................................................................	26	1	23.00	0.00	0.00	0.00	23.00
.............................................................................................TCAGCAACTTGATTCCAGCAATT............................................................	23	1	23.00	1.00	0.00	0.00	22.00
............................................................................................GTCAGCAACTTGATTCCAGAAA..............................................................	22	1	21.00	0.00	0.00	0.00	21.00
............................................................................................GTCAGCAACTTGATTCAAGCAA..............................................................	22	1	21.00	1.00	3.00	0.00	17.00
............................................................................................GTGAGCAACTTGATTCCAGCA...............................................................	21	1	20.00	1.00	0.00	0.00	19.00
............................................................................................GTTAGCAACTTGATTCCAGCA...............................................................	21	1	20.00	0.00	0.00	0.00	20.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	19.00	0.00	2.00	0.00	17.00
............................................................................................ATCAGCAACTTGATTCCAGCA...............................................................	21	1	19.00	0.00	0.00	0.00	19.00
............................................................................................GTCAGCAACTTGATCCCAGCA...............................................................	21	1	19.00	1.00	0.00	0.00	18.00
.............TGGGTGATTGCGTTGCAGTT...............................................................................................................................................	20	1	19.00	0.00	2.00	0.00	17.00
.............................................................................................TCAGCAACTTGATTCCAGCAA..............................................................	21	1	19.00	0.00	2.00	0.00	17.00
.................................CCTGTAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	18.00	0.00	0.00	0.00	18.00
............................................................................................GTCAGCAACTTGATTCCAGCAG..............................................................	22	1	18.00	1.00	1.00	0.00	16.00
............................................................................................GTCAGCAACTCGATTCCAGCA...............................................................	21	1	17.00	1.00	1.00	0.00	15.00
............................................................................................GTCAGCAACTTGATTCCCGCAA..............................................................	22	1	16.00	1.00	9.00	0.00	6.00
............................................................................................GTCGGCAACTTGATTCCAGCA...............................................................	21	1	16.00	0.00	1.00	0.00	15.00
...............................................................................................AGCAACTTGATTCCAGCAA..............................................................	19	1	15.00	0.00	6.00	0.00	9.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	15.00	0.00	2.00	0.00	13.00
............................................................................................GTCAGCAACTTGCTTCCAGCAA..............................................................	22	1	15.00	1.00	9.00	0.00	5.00
............................................................................................GTCAGCAACTTGATTCTAGCA...............................................................	21	1	14.00	0.00	3.00	0.00	11.00
............................................................................................GTCAGCAACTTGATTCCCGCA...............................................................	21	1	14.00	1.00	6.00	0.00	7.00
............................................................................................GTCAGCAACTTGATTCCAGCCA..............................................................	22	1	14.00	6.00	7.00	0.00	1.00
.................................CCTGGAATTAAGTTTACTGTGTAGCC.....................................................................................................................	26	1	13.00	0.00	0.00	0.00	13.00
............................................................................................GTCAGCAACTTGACTCCAGCAA..............................................................	22	1	13.00	1.00	2.00	0.00	10.00
............................................................................................GTCAGCAACTTGATTCCACCA...............................................................	21	1	13.00	0.00	5.00	0.00	8.00
............................................................................................TTCAGCAACTTGATTCCAGCAA..............................................................	22	1	13.00	0.00	2.00	0.00	11.00
............................................................................................GTCAGCAACTTGATTCCAGCG...............................................................	21	1	13.00	0.00	1.00	0.00	12.00
.................................CCTGTAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	13.00	0.00	0.00	0.00	13.00
.................................CCTGGAATTAAGTTGACTTTGTAGC......................................................................................................................	25	1	12.00	0.00	0.00	0.00	12.00
.................................CCTGGAATTAAGTTGACTTTGTAGCC.....................................................................................................................	26	1	12.00	0.00	1.00	0.00	11.00
............................................................................................GTCAGCAGCTTGATTCCAGCA...............................................................	21	1	12.00	0.00	0.00	0.00	12.00
............................................................................................GTCAGCAACTTAATTCCAGCA...............................................................	21	1	12.00	0.00	4.00	0.00	8.00
.................................CCTGGAATTAAGTTGAATGTGTAGC......................................................................................................................	25	1	12.00	0.00	0.00	0.00	12.00
.................................CCTGGAATTAAGTTGAATGTGTAGCC.....................................................................................................................	26	1	12.00	0.00	0.00	0.00	12.00
...............................TTCCTGGAATTAAGTTGACTGTG..........................................................................................................................	23	1	12.00	0.00	0.00	0.00	12.00
............................................................................................GTCAGCAACTTGGTTCCAGCA...............................................................	21	1	12.00	0.00	2.00	0.00	10.00
............................................................................................GTCAGCAACTTGACTCCAGCA...............................................................	21	1	12.00	0.00	0.00	0.00	12.00
.................................CATGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	11.00	0.00	0.00	0.00	11.00
..............................................................................................CAGCAACTTGATTCCAGCAA..............................................................	20	1	11.00	0.00	0.00	0.00	11.00
.................................CCTGGAATTAATTTGACTGTGTAGCC.....................................................................................................................	26	1	11.00	0.00	0.00	0.00	11.00
............................................................................................GTCAGCAAATTGATTCCAGCAA..............................................................	22	1	11.00	0.00	3.00	0.00	8.00
............................................................................................ATCAGCAACTTGATTCCAGCAA..............................................................	22	1	11.00	0.00	0.00	0.00	11.00
............................................................................................GTCAGCACCTTGATTCCAGCA...............................................................	21	1	11.00	0.00	3.00	0.00	8.00
............................................................................................GTCAGCAACTTGATTCCAGCAAAA............................................................	24	1	11.00	0.00	2.00	0.00	9.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	11.00	0.00	1.00	0.00	10.00
............................................................................................GTCAGCAACTTGATTCCGGCA...............................................................	21	1	11.00	0.00	0.00	0.00	11.00

droEug1

ATGATGATTACAATGGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTATTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACGAAG

Size

Hit Count

Total Norm

droBia1

ACA---------ACAGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCCGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TAATCCGCAACAA--

Size

Hit Count

Total Norm

droTak1

ACG---------ATGGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATG

Size

Hit Count

Total Norm

droEle1

ACG---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAA--

Size

Hit Count

Total Norm

droRho1

AGG---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAAAG

Size

Hit Count

Total Norm

droFic1

AGTA--------AAAGGTAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAAATTCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAA-----------------------------------TATTCCGCAACAATA

Size

Hit Count

Total Norm

droKik1

ATAT--------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGTACTGCTTCCGAAGTCAGCAACTTGATTCCAGCAATTGCGGCCGCAA-----------------------------------TAATCCGCATC----

Size

Hit Count

Total Norm

droAna3

ACA---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	10156.00	145.00	9172.00	823.00	16.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	2720.00	165.00	1940.00	589.00	26.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	2083.00	570.00	1114.00	395.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	1988.00	334.00	1150.00	504.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	315.00	100.00	96.00	119.00	0.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	280.00	65.00	80.00	135.00	0.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	227.00	28.00	89.00	109.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	207.00	2.00	190.00	15.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	131.00	13.00	89.00	29.00	0.00
............................................................................................GTCAGCAACTTGATTCCATCA...............................................................	21	1	122.00	0.00	118.00	4.00	0.00
..............AGGCAATTGCGTTGCAGTT...............................................................................................................................................	19	1	120.00	4.00	76.00	40.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	95.00	5.00	60.00	30.00	0.00
............................................................................................GTCAGAAACTTGATTCCAGCA...............................................................	21	1	88.00	0.00	79.00	9.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	83.00	17.00	45.00	19.00	2.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	81.00	0.00	78.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	80.00	7.00	49.00	21.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	72.00	27.00	24.00	21.00	0.00
.............................................................................................TCAGCAACTTGATTCCAGCA...............................................................	20	1	64.00	1.00	62.00	1.00	0.00
............................................................................................GTCATCAACTTGATTCCAGCA...............................................................	21	1	54.00	0.00	53.00	0.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGAA...............................................................	21	1	46.00	0.00	44.00	2.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	46.00	1.00	43.00	2.00	0.00
............................................................................................GTCAGCAACTTTATTCCAGCA...............................................................	21	1	41.00	1.00	38.00	2.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTATC......................................................................................................................	25	1	40.00	7.00	22.00	11.00	0.00
............................................................................................GTCAGCAACTTGATTACAGCA...............................................................	21	1	39.00	1.00	35.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	30.00	1.00	16.00	13.00	0.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	30.00	8.00	4.00	18.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAG..............................................................	22	1	29.00	0.00	22.00	7.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCG...............................................................	21	1	29.00	2.00	27.00	0.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCA...............................................................	21	1	29.00	1.00	6.00	22.00	0.00
............................................................................................GTGAGCAACTTGATTCCAGCA...............................................................	21	1	26.00	0.00	23.00	3.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	26.00	2.00	15.00	9.00	0.00
............................................................................................GTCAGCAACTTGATTCAAGCA...............................................................	21	1	24.00	0.00	24.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	23.00	1.00	16.00	5.00	1.00
............................................................................................GTAAGCAACTTGATTCCAGCA...............................................................	21	1	22.00	1.00	19.00	2.00	0.00
............................................................................................GCCAGCAACTTGATTCCAGCA...............................................................	21	1	21.00	1.00	13.00	7.00	0.00
............................................................................................GACAGCAACTTGATTCCAGCA...............................................................	21	1	21.00	0.00	11.00	10.00	0.00
............................................................................................GTCAGCAACTTGATTCCGGCA...............................................................	21	1	18.00	0.00	17.00	1.00	0.00
.................................ACTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	17.00	3.00	10.00	4.00	0.00
............................................................................................TTCAGCAACTTGATTCCAGCA...............................................................	21	1	17.00	0.00	16.00	1.00	0.00
............................................................................................GTCAGAAACTTGATTCCAGCAA..............................................................	22	1	17.00	1.00	13.00	3.00	0.00
...............................................................................................AGCAACTTGATTCCAGCA...............................................................	18	1	17.00	1.00	7.00	8.00	1.00
............................................................................................GTCAGCAACTCGATTCCAGCA...............................................................	21	1	16.00	1.00	11.00	4.00	0.00
.................................CCTGGAATTAAGTTGACTGTATAGC......................................................................................................................	25	1	15.00	4.00	11.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCATCAA..............................................................	22	1	15.00	0.00	12.00	3.00	0.00
.................................ACTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	15.00	1.00	6.00	8.00	0.00
.............................................................................................TCAGCAACTTGATTCCAGCAA..............................................................	21	1	15.00	0.00	13.00	2.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCTT..............................................................	22	1	15.00	1.00	11.00	3.00	0.00
.................................CCTGGAATTAAGTTGACTGTCTAGC......................................................................................................................	25	1	14.00	9.00	5.00	0.00	0.00
............................................................................................GTCAGCAGCTTGATTCCAGCA...............................................................	21	1	14.00	0.00	11.00	3.00	0.00
.................................CATGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	14.00	3.00	9.00	2.00	0.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	14.00	4.00	6.00	4.00	0.00
............................................................................................GTTAGCAACTTGATTCCAGCA...............................................................	21	1	13.00	0.00	13.00	0.00	0.00
............................................................................................GTCAGCAACTTGATCCCAGCA...............................................................	21	1	12.00	0.00	7.00	5.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCAA..............................................................	22	1	12.00	0.00	1.00	10.00	1.00
.................................CCTGGAATTAAGTTTACTGTGTAGCC.....................................................................................................................	26	1	11.00	0.00	10.00	1.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGT................................................................	20	1	11.00	1.00	10.00	0.00	0.00
............................................................................................GTCATCAACTTGATTCCAGCAA..............................................................	22	1	11.00	0.00	10.00	1.00	0.00
............................................................................................GTAAGCAACTTGATTCCAGCAA..............................................................	22	1	11.00	2.00	4.00	5.00	0.00
............................................................................................GTCAGCAACTTGGTTCCAGCA...............................................................	21	1	11.00	1.00	8.00	2.00	0.00
.................................CATGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	11.00	0.00	6.00	5.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAATT............................................................	24	1	11.00	1.00	9.00	1.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCTA..............................................................	22	1	11.00	3.00	6.00	1.00	1.00
............................................................................................GTCAGCAACTTGCTTCCAGCAA..............................................................	22	1	10.00	2.00	2.00	6.00	0.00
............................................................................................GTCAGCAACTTGATTTCAGCA...............................................................	21	1	10.00	1.00	8.00	1.00	0.00
............................................................................................GTCGGCAACTTGATTCCAGCA...............................................................	21	1	10.00	0.00	10.00	0.00	0.00
............................................................................................GCCAGCAACTTGATTCCAGCAA..............................................................	22	1	10.00	0.00	6.00	4.00	0.00
............................................................................................GTCAGAAACTTGATTCCAGAA...............................................................	21	1	9.00	0.00	9.00	0.00	0.00
............................................................................................GTCAGTAACTTGATTCCAGCA...............................................................	21	1	9.00	0.00	6.00	3.00	0.00
.................................CCTGGAATTAAGTTGACTGTGCAGC......................................................................................................................	25	1	9.00	1.00	3.00	5.00	0.00
............................................................................................GTCAGCAACCTGATTCCAGCA...............................................................	21	1	9.00	0.00	9.00	0.00	0.00
............................................................................................GTCAGCAAATTGATTCCAGCAA..............................................................	22	1	9.00	0.00	1.00	8.00	0.00
............................................................................................GTCAGCAACTTGATTCTAGCA...............................................................	21	1	9.00	0.00	6.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGAAA..............................................................	22	1	9.00	0.00	8.00	1.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	9.00	3.00	2.00	4.00	0.00
.................................CCGGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	9.00	0.00	8.00	1.00	0.00
............................................................................................GTCAGCAACTTGCTTCCAGCA...............................................................	21	1	9.00	0.00	3.00	6.00	0.00
.................................CCTGTAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	8.00	1.00	7.00	0.00	0.00
.................................CCGGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	8.00	0.00	6.00	2.00	0.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	8.00	1.00	4.00	3.00	0.00
.............AAGGCAATTGCGTTGCAGTT...............................................................................................................................................	20	1	8.00	1.00	4.00	3.00	0.00
............................................................................................GTGAGCAACTTGATTCCAGCAA..............................................................	22	1	8.00	0.00	8.00	0.00	0.00
............................................................................................ATCAGCAACTTGATTCCAGCA...............................................................	21	1	8.00	0.00	7.00	1.00	0.00
.................................CCTGGAATTAAGTTGACTGTATAGCC.....................................................................................................................	26	1	8.00	3.00	5.00	0.00	0.00
............................................................................................GTCACCAACTTGATTCCAGCAA..............................................................	22	1	8.00	1.00	5.00	2.00	0.00
.................................CCTGGAATTAAGTTGACTGTCTAGCC.....................................................................................................................	26	1	8.00	1.00	5.00	1.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGCCA..............................................................	22	1	8.00	2.00	4.00	1.00	1.00
.................................CCTGGAATTAAGTTTACTGTGTAGC......................................................................................................................	25	1	8.00	2.00	6.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTT........................................................................................................................	23	1	8.00	3.00	4.00	1.00	0.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	8.00	0.00	1.00	7.00	0.00
............................................................................................GTCAGCAACTTGATTCCGGCAA..............................................................	22	1	8.00	0.00	4.00	4.00	0.00
.................................CCTTGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	7.00	2.00	5.00	0.00	0.00
............................................................................................GTCAGCAAATTGATTCCAGCA...............................................................	21	1	7.00	0.00	1.00	6.00	0.00
............................................................................................GTCAGCAACTTGATTCCACCA...............................................................	21	1	7.00	0.00	1.00	6.00	0.00
............................................................................................GACAGCAACTTGATTCCAGCAA..............................................................	22	1	7.00	0.00	2.00	5.00	0.00
............................................................................................GTCAGCGACTTGATTCCAGCA...............................................................	21	1	7.00	0.00	7.00	0.00	0.00
............................................................................................GTCAGCAACTTAATTCCAGCA...............................................................	21	1	7.00	1.00	5.00	1.00	0.00
..............................................................................................CAGCAACTTGATTCCAGCA...............................................................	19	1	7.00	0.00	7.00	0.00	0.00
............................................................................................GTCAGCAACTCGATTCCAGCAA..............................................................	22	1	7.00	0.00	7.00	0.00	0.00
............................................................................................GTCATCAACTTGATTCCATCA...............................................................	21	1	7.00	1.00	6.00	0.00	0.00
.................................CCTGGAATTAATTTGACTGTGTAGC......................................................................................................................	25	1	7.00	3.00	1.00	2.00	1.00
............................................................................................GTCACCAACTTGATTCCAGCA...............................................................	21	1	7.00	0.00	7.00	0.00	0.00

droBip1

ACA---------AAAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTGAGGG-CAAGGCTTGAGAACTGCTTCAGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGTACAGCA---GAAAGAGCCGTGAACCGTGTTCAATATGCCACGACAATG

Size

Hit Count

Total Norm

dp4

ATC---------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGG-CAAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	2041.00	493.00	127.00	867.00	554.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	1653.00	181.00	244.00	1166.00	62.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	1317.00	502.00	67.00	423.00	325.00
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	1118.00	116.00	53.00	928.00	21.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	356.00	113.00	3.00	201.00	39.00
..............AGGCAATTGCGTTGCAGTT...............................................................................................................................................	19	1	164.00	7.00	6.00	151.00	0.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	134.00	29.00	1.00	92.00	12.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	81.00	22.00	0.00	59.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	65.00	9.00	1.00	49.00	6.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	48.00	16.00	0.00	21.00	11.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	42.00	5.00	0.00	31.00	6.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	37.00	2.00	2.00	21.00	12.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	28.00	4.00	3.00	20.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	24.00	3.00	0.00	21.00	0.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	15.00	4.00	0.00	8.00	3.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	13.00	0.00	2.00	11.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCAA..............................................................	22	1	13.00	0.00	0.00	13.00	0.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	12.00	4.00	0.00	3.00	5.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	11.00	0.00	2.00	9.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCCA..............................................................	22	1	11.00	1.00	5.00	5.00	0.00
............................................................................................GTCAGCAACTTGATTCCCGCA...............................................................	21	1	9.00	0.00	1.00	8.00	0.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	9.00	0.00	1.00	7.00	1.00
............................................................................................GACAGCAACTTGATTCCAGCAA..............................................................	22	1	9.00	1.00	4.00	4.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	8.00	1.00	0.00	1.00	6.00
............................................................................................GTCAGCAACTTGATTCAAGCAA..............................................................	22	1	8.00	0.00	0.00	8.00	0.00
...............................................................................................AGCAACTTGATTCCAGCAA..............................................................	19	1	8.00	0.00	3.00	5.00	0.00
...............................................................................................AGCAACTTGATTCCAGCA...............................................................	18	1	8.00	1.00	1.00	6.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGAC.....................................................................................................................	26	1	7.00	1.00	1.00	2.00	3.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	7.00	5.00	0.00	1.00	1.00
.................................CCTGGAATTAAGCTGACTGTGTAGCC.....................................................................................................................	26	1	7.00	1.00	1.00	5.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	7.00	0.00	2.00	5.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCA...............................................................	21	1	7.00	0.00	0.00	7.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGT......................................................................................................................	25	1	6.00	2.00	2.00	2.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	6.00	0.00	0.00	4.00	2.00
............................................................................................GTCAGCAACTTGCTTCCAGCAA..............................................................	22	1	6.00	0.00	0.00	6.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	6.00	0.00	0.00	1.00	5.00
............................................................................................GTAAGCAACTTGATTCCAGCAA..............................................................	22	1	5.00	0.00	1.00	4.00	0.00
.................................CCTGGAATTAAGGTGACTGTGTAGCC.....................................................................................................................	26	1	5.00	0.00	1.00	3.00	1.00
.................................CCTGGAATTAAGTTGACTGCGTAGCC.....................................................................................................................	26	1	5.00	0.00	0.00	5.00	0.00
............................................................................................GCCAGCAACTTGATTCCAGCA...............................................................	21	1	5.00	0.00	0.00	5.00	0.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	5.00	0.00	0.00	4.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGCTT..............................................................	22	1	5.00	0.00	1.00	4.00	0.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	5.00	2.00	1.00	2.00	0.00
.................................CCCGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	5.00	1.00	0.00	4.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCTA..............................................................	22	1	5.00	0.00	2.00	3.00	0.00
.................................CCTGGAATTAAGATGACTGTGTAGCC.....................................................................................................................	26	1	5.00	1.00	0.00	2.00	2.00
............................................................................................GTAAGCAACTTGATTCCAGCA...............................................................	21	1	4.00	0.00	1.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCCGCAA..............................................................	22	1	4.00	0.00	0.00	4.00	0.00
............................................................................................GTCAGCAACTTGATTCTAGCAA..............................................................	22	1	4.00	0.00	1.00	3.00	0.00
.................................TCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	4.00	0.00	0.00	4.00	0.00
.............................................................................................TCAGCAACTTGATTCCAGCAA..............................................................	21	1	4.00	2.00	1.00	1.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	4.00	0.00	2.00	2.00	0.00
............................................................................................GACAGCAACTTGATTCCAGCA...............................................................	21	1	4.00	0.00	0.00	4.00	0.00
.................................CCTGGAATTAAGTTGATTGTGTAGCC.....................................................................................................................	26	1	3.00	3.00	0.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCACCAA..............................................................	22	1	3.00	0.00	0.00	3.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTCGC......................................................................................................................	25	1	3.00	0.00	0.00	0.00	3.00
............................................................................................GTCAGCAACCTGATTCCAGCAA..............................................................	22	1	3.00	0.00	0.00	3.00	0.00
.................................CCTGGAATTAAGATGACTGTGTATCC.....................................................................................................................	26	1	3.00	0.00	2.00	1.00	0.00
.................................CCTGGAATTAAGTTGCCTGTGTAGC......................................................................................................................	25	1	3.00	2.00	0.00	1.00	0.00
.................................ACTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	3.00	0.00	0.00	3.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTATC......................................................................................................................	25	1	3.00	0.00	0.00	3.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTACCC.....................................................................................................................	26	1	3.00	0.00	0.00	3.00	0.00
.................................TCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	3.00	0.00	0.00	3.00	0.00
.................................CCTGGAATTACGTTGACTGTGTAGCC.....................................................................................................................	26	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCAAGCA...............................................................	21	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTCAGCAGCTTGATTCCAGCA...............................................................	21	1	3.00	0.00	0.00	3.00	0.00
.................................CCTGGAATTAAGTTGACTGTGCAGC......................................................................................................................	25	1	3.00	0.00	0.00	2.00	1.00
.................................CCTGGAATTAAGTTGACCGTGTAGCC.....................................................................................................................	26	1	3.00	3.00	0.00	0.00	0.00
.................................CCTGGAATTAAGGTGACTGTGTAGC......................................................................................................................	25	1	3.00	1.00	1.00	1.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGTC.....................................................................................................................	26	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTACAGCA...............................................................	21	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTGAGCAACTTGATTCCAGCAA..............................................................	22	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTCAGCAAATTGATTCCAGCAA..............................................................	22	1	3.00	0.00	1.00	2.00	0.00
............................................................................................GTCAGCAACTTGATTCCATCAA..............................................................	22	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGT................................................................	20	1	3.00	2.00	0.00	1.00	0.00
............................................................................................GTCAGCACCTTGATTCCAGCA...............................................................	21	1	3.00	0.00	1.00	2.00	0.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	3.00	2.00	1.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGCGTAGC......................................................................................................................	25	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCG...............................................................	21	1	3.00	0.00	1.00	2.00	0.00
............................................................................................GCCAGCAACTTGATTCCAGCAA..............................................................	22	1	3.00	0.00	1.00	2.00	0.00
............................................................................................GTCAGCGACTTGATTCCAGCA...............................................................	21	1	3.00	0.00	2.00	1.00	0.00
............................................................................................GTCAGAAACTTGATTCCAGCAA..............................................................	22	1	3.00	0.00	0.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCGGCAA..............................................................	22	1	3.00	0.00	3.00	0.00	0.00
............................................................................................GTCAGCAACTTGACTCCAGCA...............................................................	21	1	3.00	1.00	0.00	2.00	0.00
.................................CCTGGAATTAAGTCGACTGTGTAGCC.....................................................................................................................	26	1	3.00	1.00	0.00	2.00	0.00
..................................CTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	23	1	3.00	1.00	0.00	2.00	0.00

droPer1

ATC---------AGAGGCAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGGGAAGG-CAAGGCTTGAGCACTGCTTCTGAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCACAACGCTGAATGG------------TGCTCAAAATAC----------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	15615.00	634.00	35.00	1647.00	2831.00	10468.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	3791.00	672.00	21.00	507.00	760.00	1831.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	2553.00	55.00	105.00	1093.00	1144.00	156.00
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	1835.00	42.00	23.00	731.00	1033.00	6.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	873.00	153.00	5.00	246.00	363.00	106.00
..............AGGCAATTGCGTTGCAGTT...............................................................................................................................................	19	1	304.00	6.00	3.00	111.00	184.00	0.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	304.00	33.00	0.00	88.00	181.00	2.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	199.00	5.00	4.00	31.00	30.00	129.00
.................................CCTGGAATTAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	162.00	0.00	0.00	1.00	5.00	156.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	160.00	22.00	0.00	29.00	46.00	63.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	143.00	13.00	0.00	49.00	80.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTAGAC.....................................................................................................................	26	1	129.00	1.00	0.00	5.00	4.00	119.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	93.00	11.00	0.00	30.00	47.00	5.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	77.00	0.00	0.00	13.00	63.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	69.00	1.00	0.00	24.00	36.00	8.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	51.00	1.00	0.00	26.00	21.00	3.00
.................................CCTGGAATTAAGGTGACTGTGTAGCC.....................................................................................................................	26	1	49.00	0.00	0.00	1.00	16.00	32.00
.................................CCTGGAATTAAGTTGACTGTTTAGCC.....................................................................................................................	26	1	47.00	0.00	0.00	3.00	8.00	36.00
.................................CCTGGAATTAAGCTGACTGTGTAGCC.....................................................................................................................	26	1	44.00	0.00	0.00	4.00	22.00	18.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	39.00	0.00	0.00	3.00	16.00	20.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	39.00	4.00	0.00	11.00	22.00	2.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	38.00	0.00	0.00	12.00	26.00	0.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	37.00	3.00	0.00	7.00	16.00	11.00
.................................CCTGGAATTAAGTTGACTTTGTAGCC.....................................................................................................................	26	1	37.00	0.00	0.00	3.00	0.00	34.00
.................................CCTGAAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	37.00	0.00	0.00	0.00	3.00	34.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	35.00	1.00	0.00	4.00	27.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTCGC......................................................................................................................	25	1	33.00	0.00	0.00	2.00	0.00	31.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	31.00	1.00	0.00	4.00	23.00	3.00
.................................ACTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	31.00	0.00	0.00	5.00	22.00	4.00
.................................TCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	29.00	0.00	0.00	6.00	20.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTATC......................................................................................................................	25	1	27.00	0.00	0.00	4.00	23.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCAA..............................................................	22	1	25.00	0.00	0.00	7.00	18.00	0.00
.................................CCTGGAATTAAGTTGACTGGGTAGCC.....................................................................................................................	26	1	23.00	0.00	0.00	0.00	4.00	19.00
.................................CCTGGAATTAAGTTGACxxTGTAGCC.....................................................................................................................	24	1	22.00	1.00	0.00	1.00	0.00	20.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	22.00	1.00	0.00	2.00	6.00	13.00
.................................CCTGGAATTAAGTTGACTGCGTAGCC.....................................................................................................................	26	1	21.00	0.00	0.00	1.00	9.00	11.00
............................................................................................GTCAGCAACTTGATTCCAGCCA..............................................................	22	1	21.00	0.00	2.00	11.00	4.00	4.00
...............GGCAATTGCGTTGCAGTT...............................................................................................................................................	18	1	21.00	0.00	0.00	4.00	17.00	0.00
............................................................................................GTCAGCAACTTGCTTCCAGCA...............................................................	21	1	20.00	0.00	0.00	1.00	19.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	19.00	4.00	0.00	3.00	5.00	7.00
.................................CCTGGAATTAATTTGACTGTGTAGCC.....................................................................................................................	26	1	18.00	0.00	0.00	1.00	1.00	16.00
.................................CCTGGAATTAAGATGACTGTGTAGCC.....................................................................................................................	26	1	18.00	0.00	0.00	1.00	4.00	13.00
.................................CCTTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	17.00	0.00	0.00	1.00	0.00	16.00
.................................CCTGGAATTAAGTTGACTGTGTAGT......................................................................................................................	25	1	17.00	4.00	0.00	3.00	6.00	4.00
............................................................................................GTCAGCAACTTGCTTCCAGCAA..............................................................	22	1	17.00	0.00	1.00	5.00	11.00	0.00
.................................CCTCGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	17.00	0.00	0.00	0.00	2.00	15.00
............................................................................................GGCAGCAACTTGATTCCAGCA...............................................................	21	1	17.00	0.00	0.00	4.00	13.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	16.00	0.00	0.00	2.00	14.00	0.00
.................................CCTGGAATTAAGTTGGCTGTGTAGCC.....................................................................................................................	26	1	16.00	0.00	0.00	1.00	5.00	10.00
......................................AATTAAGTTGACTGTGTAGCC.....................................................................................................................	21	1	15.00	0.00	0.00	0.00	1.00	14.00
............................................................................................GTAAGCAACTTGATTCCAGCAA..............................................................	22	1	15.00	0.00	0.00	6.00	9.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	15.00	0.00	1.00	4.00	7.00	3.00
.................................CCTGGCATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	15.00	0.00	0.00	8.00	7.00	0.00
.................................CCGGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	15.00	0.00	0.00	0.00	14.00	1.00
.......................................ATTAAGTTGACTGTGTAGCC.....................................................................................................................	20	1	15.00	3.00	0.00	1.00	1.00	10.00
.................................CATGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	15.00	0.00	0.00	2.00	13.00	0.00
............................................................................................GACAGCAACTTGATTCCAGCA...............................................................	21	1	15.00	0.00	0.00	0.00	15.00	0.00
.................................ACTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	14.00	3.00	0.00	1.00	9.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTACCC.....................................................................................................................	26	1	14.00	0.00	0.00	4.00	7.00	3.00
.................................CCTGGAATTAAGTTGACTGTGTGGCC.....................................................................................................................	26	1	14.00	0.00	0.00	2.00	6.00	6.00
.................................CCTGGAATTAAGTTGACTGTCTAGCC.....................................................................................................................	26	1	14.00	0.00	0.00	1.00	2.00	11.00
.................................CCTGGAATTAGGTTGACTGTGTAGCC.....................................................................................................................	26	1	14.00	1.00	0.00	4.00	6.00	3.00
...............................................................................................AGCAACTTGATTCCAGCA...............................................................	18	1	13.00	0.00	0.00	4.00	9.00	0.00
.................................CCTGGAATTACGTTGACTGTGTAGCC.....................................................................................................................	26	1	12.00	0.00	0.00	2.00	9.00	1.00
............................................................................................GACAGCAACTTGATTCCAGCAA..............................................................	22	1	12.00	0.00	0.00	4.00	8.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	12.00	0.00	1.00	6.00	4.00	1.00
.................................CCTGGGATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	12.00	0.00	0.00	2.00	10.00	0.00
.................................CCTGGAATTAAGTCGACTGTGTAGCC.....................................................................................................................	26	1	12.00	1.00	0.00	1.00	6.00	4.00
............................................................................................GTCAGCAACTTGATTCAAGCAA..............................................................	22	1	12.00	0.00	0.00	7.00	5.00	0.00
.................................TCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	11.00	0.00	0.00	3.00	7.00	1.00
............................................................................................GTCAGCAACTTGATTCCACCA...............................................................	21	1	11.00	0.00	0.00	2.00	9.00	0.00
..................................CCTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	11.00	0.00	0.00	0.00	1.00	10.00
.................................CCTGCAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	11.00	0.00	0.00	0.00	1.00	10.00
.................................CCTGGAATTAAGTTGACTGTGTAACC.....................................................................................................................	26	1	11.00	0.00	1.00	4.00	1.00	5.00
............................................................................................GTCAGCAACTTGATTCCAGCACC.............................................................	23	1	11.00	0.00	0.00	0.00	0.00	11.00
............................................................................................GTCAGCAACTTGTTTCCAGCA...............................................................	21	1	11.00	0.00	0.00	0.00	11.00	0.00
.................................CCTGGAATTAACTTGACTGTGTAGCC.....................................................................................................................	26	1	11.00	0.00	0.00	0.00	5.00	6.00
............................................................................................GCCAGCAACTTGATTCCAGCAA..............................................................	22	1	11.00	0.00	1.00	3.00	7.00	0.00
.................................CCTGGAGTTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	10.00	1.00	0.00	3.00	4.00	2.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCC....................................................................................................................	27	1	10.00	2.00	0.00	0.00	0.00	8.00
.................................CCTGGAATTAAGTTGACTGTGTAGTC.....................................................................................................................	26	1	10.00	0.00	0.00	1.00	8.00	1.00
.................................CCTGGAATTAAGTTGACTGTATAGCC.....................................................................................................................	26	1	10.00	0.00	0.00	1.00	2.00	7.00
.................................CCTGGAACTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	10.00	0.00	0.00	1.00	4.00	5.00
............................................................................................GCCAGCAACTTGATTCCAGCA...............................................................	21	1	10.00	0.00	0.00	3.00	7.00	0.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	10.00	0.00	0.00	2.00	8.00	0.00
............................................................................................GTCAGCAAATTGATTCCAGCA...............................................................	21	1	9.00	0.00	1.00	3.00	5.00	0.00
............................................................................................GTCAGCAGCTTGATTCCAGCAA..............................................................	22	1	9.00	0.00	0.00	4.00	5.00	0.00
.................................CCTGGAATTAAGTTGACTGTGCAGC......................................................................................................................	25	1	9.00	2.00	0.00	1.00	5.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTAA.......................................................................................................................	24	1	9.00	1.00	0.00	2.00	5.00	1.00
............................................................................................GTCAGAAACTTGATTCCAGCAA..............................................................	22	1	9.00	0.00	0.00	6.00	3.00	0.00
............................................................................................GTCAGCAACTTGATTCCCGCA...............................................................	21	1	9.00	0.00	0.00	4.00	5.00	0.00
.................................CCTGGAATTAAGTTCACTGTGTAGCC.....................................................................................................................	26	1	9.00	1.00	0.00	0.00	7.00	1.00
.................................CCCGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	9.00	0.00	0.00	1.00	4.00	4.00
............................................................................................GTCAGCAACTTGATTCCAGCCT..............................................................	22	1	8.00	0.00	1.00	0.00	1.00	6.00
............................................................................................GTCAGCAAATTGATTCCAGCAA..............................................................	22	1	8.00	0.00	2.00	2.00	4.00	0.00
.................................CTTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	8.00	0.00	0.00	3.00	2.00	3.00
.............................................................................................TCAGCAACTTGATTCCAGCA...............................................................	20	1	8.00	0.00	0.00	3.00	5.00	0.00
............................................................................................GTCAGCAACTTGATTCCACCAA..............................................................	22	1	8.00	0.00	0.00	2.00	6.00	0.00
............................................................................................GTCAGCAATTTGATTCCAGCAA..............................................................	22	1	8.00	0.00	0.00	1.00	7.00	0.00
.................................CCTAGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	8.00	3.00	0.00	1.00	0.00	4.00
.................................CCTGGAATTAAGGTGACTGTGTAGC......................................................................................................................	25	1	8.00	0.00	0.00	0.00	1.00	7.00

droWil1

GTG---------TGTGACAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTTAGGGGAAAGGCTTGAGCATTGCATACTAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGCTCAA-----------------------------CGTT---CAACAGTG	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	112910.00	154.00	969.00	1614.00	110173.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	45798.00	295.00	823.00	2124.00	42556.00
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	9725.00	38.00	584.00	6733.00	2370.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	7927.00	8.00	47.00	190.00	7682.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	7731.00	70.00	938.00	2532.00	4191.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	4926.00	73.00	54.00	224.00	4575.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	2322.00	5.00	19.00	45.00	2253.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	1770.00	1.00	2.00	85.00	1682.00
.................................CCTGGAATTAAGTTGACTGTGTAGAC.....................................................................................................................	26	1	1611.00	0.00	1.00	6.00	1604.00
.................................CCTGGAATTAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	1550.00	0.00	2.00	2.00	1546.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	1164.00	37.00	5.00	83.00	1039.00
............................................................................................GTCAGCAACTTGATTCCAGCACC.............................................................	23	1	1152.00	0.00	2.00	10.00	1140.00
.................................CCTGGAATTAAGTTGACTGTGTCGC......................................................................................................................	25	1	616.00	0.00	0.00	2.00	614.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	505.00	2.00	4.00	8.00	491.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	440.00	0.00	0.00	0.00	440.00
.................................CCTGGAATTAAGTTGACTGTTTAGCC.....................................................................................................................	26	1	432.00	1.00	1.00	3.00	427.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCC....................................................................................................................	27	1	367.00	0.00	0.00	4.00	363.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	355.00	6.00	17.00	30.00	302.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	307.00	0.00	0.00	70.00	237.00
.................................CCTGGAATTAAGGTGACTGTGTAGCC.....................................................................................................................	26	1	303.00	0.00	1.00	0.00	302.00
.................................CCTGGAATTAAGATGACTGTGTAGCC.....................................................................................................................	26	1	272.00	0.00	1.00	2.00	269.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	270.00	1.00	2.00	11.00	256.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	245.00	5.00	2.00	92.00	146.00
.................................CCTGGAATTAAGTTGACTTTGTAGCC.....................................................................................................................	26	1	231.00	0.00	2.00	1.00	228.00
.................................CCTGGAATTAAGTTGACTGTGTGG.......................................................................................................................	24	1	191.00	0.00	0.00	0.00	191.00
.................................CCTGGAATTAAGTTGACxxTGTAGCC.....................................................................................................................	24	1	186.00	0.00	0.00	5.00	181.00
.................................CCTGAAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	170.00	0.00	1.00	3.00	166.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	170.00	0.00	25.00	61.00	84.00
.................................CCTGGAATTAAGTTGACTGTGG.........................................................................................................................	22	1	165.00	0.00	0.00	0.00	165.00
.................................CCTGGAATTAATTTGACTGTGTAGCC.....................................................................................................................	26	1	164.00	0.00	1.00	0.00	163.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	150.00	2.00	4.00	13.00	131.00
.................................CCTTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	149.00	0.00	1.00	2.00	146.00
.................................CCTGGAATTAAGTTGACTGTxTAGCC.....................................................................................................................	25	1	138.00	0.00	0.00	1.00	137.00
.................................CCTGGAATTAAGCTGACTGTGTAGCC.....................................................................................................................	26	1	138.00	0.00	2.00	4.00	132.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	132.00	1.00	3.00	28.00	100.00
.................................CCTGGAATTAAGTTGACTGTGTAA.......................................................................................................................	24	1	122.00	0.00	0.00	8.00	114.00
.................................CCTGGAATTAAGTTGACTGGGTAGCC.....................................................................................................................	26	1	118.00	0.00	1.00	0.00	117.00
.................................CCTGGAATTAAGTTGACTGTGC.........................................................................................................................	22	1	118.00	0.00	0.00	0.00	118.00
.................................CCTGGAATTAAGTTGACTGCGTAGCC.....................................................................................................................	26	1	117.00	0.00	2.00	1.00	114.00
.................................CCTGGAATTAAGGTGACTGTGTAGC......................................................................................................................	25	1	112.00	0.00	0.00	1.00	111.00
.......................................ATTAAGTTGACTGTGTAGCC.....................................................................................................................	20	1	110.00	1.00	3.00	0.00	106.00
.................................CCTGGAATTAAGATGACTGTGTAGC......................................................................................................................	25	1	103.00	0.00	0.00	4.00	99.00
..............TGACAATTGCGTTGCAGTT...............................................................................................................................................	19	1	97.00	5.00	32.00	51.00	9.00
.................................CCTGGAATTAAGTTGACTGTTTAGC......................................................................................................................	25	1	96.00	0.00	1.00	0.00	95.00
............................................................................................GTCAGCAACTTGATTCCAGCACT.............................................................	23	1	90.00	0.00	0.00	6.00	84.00
.................................CCTCGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	90.00	0.00	2.00	0.00	88.00
.................................CCTGGAATTAGGTTGACTGTGTAGCC.....................................................................................................................	26	1	89.00	0.00	0.00	1.00	88.00
.................................CCTGGAATTAAGTTGACTGTGTCG.......................................................................................................................	24	1	86.00	0.00	0.00	0.00	86.00
.................................CCTGGAATTAAGTTGACTGTGTAGG......................................................................................................................	25	1	84.00	0.00	0.00	0.00	84.00
.............................................................................................TCAGCAACTTGATTCCAGCA...............................................................	20	1	83.00	1.00	1.00	79.00	2.00
.................................CCTGGAATTAAGTTGACTGTAG.........................................................................................................................	22	1	82.00	0.00	1.00	2.00	79.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	79.00	0.00	0.00	21.00	58.00
.................................CCTGGAATTAAGTTGACTGTCTAGCC.....................................................................................................................	26	1	79.00	0.00	0.00	1.00	78.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	78.00	2.00	5.00	10.00	61.00
..................................CCTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	77.00	0.00	1.00	2.00	74.00
.................................CCTGGAATTAAGTTGGCTGTGTAGCC.....................................................................................................................	26	1	75.00	0.00	0.00	2.00	73.00
.................................CCTGGAATTAAGTTGACTGTGTAAC......................................................................................................................	25	1	73.00	0.00	0.00	6.00	67.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	72.00	0.00	1.00	2.00	69.00
.................................CCCGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	71.00	1.00	1.00	3.00	66.00
............................................................................................GTCAGCAACTTGATTCCAGCG...............................................................	21	1	68.00	0.00	3.00	6.00	59.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	68.00	5.00	9.00	15.00	39.00
.................................CCTTGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	67.00	0.00	2.00	1.00	64.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCG....................................................................................................................	27	1	64.00	0.00	1.00	0.00	63.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	64.00	1.00	1.00	5.00	57.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	62.00	0.00	6.00	43.00	13.00
.................................CCTGGAATTAAGTTGACTTTGTAG.......................................................................................................................	24	1	61.00	0.00	0.00	2.00	59.00
.................................CCTGGAATTAAGCTGACTGTGTAGC......................................................................................................................	25	1	60.00	0.00	1.00	5.00	54.00
.................................CCTGGAATTAAGTTGACTCTGTAGCC.....................................................................................................................	26	1	59.00	0.00	0.00	1.00	58.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	58.00	0.00	1.00	8.00	49.00
.................................CCTGGAATTAAGTTGACTGCGTAGC......................................................................................................................	25	1	56.00	0.00	1.00	6.00	49.00
......................................AATTAAGTTGACTGTGTAGCC.....................................................................................................................	21	1	53.00	0.00	0.00	1.00	52.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCA....................................................................................................................	27	1	51.00	0.00	0.00	0.00	51.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCCC...................................................................................................................	28	1	51.00	0.00	0.00	2.00	49.00
.................................CCTGGAATTAAGTTGACTGTGTGGCC.....................................................................................................................	26	1	49.00	0.00	0.00	1.00	48.00
.................................CCTGTAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	48.00	0.00	2.00	0.00	46.00
............................................................................................GTCAGCAACTTGATTCCAGCAG..............................................................	22	1	47.00	0.00	1.00	10.00	36.00
.................................CCTGGAATTAAGTTGACTGTATAGCC.....................................................................................................................	26	1	46.00	0.00	0.00	4.00	42.00
.................................CCTGGAATTAAGTTGACCGTGTAGCC.....................................................................................................................	26	1	44.00	0.00	1.00	0.00	43.00
.................................CCTGGAATTAAGTTGACTGGGTAGC......................................................................................................................	25	1	44.00	0.00	0.00	1.00	43.00
.................................CCTGGAATTAAGTTGACTGTGCAGC......................................................................................................................	25	1	43.00	0.00	4.00	10.00	29.00
.............................................................................................TCAGCAACTTGATTCCAGCAA..............................................................	21	1	43.00	2.00	7.00	32.00	2.00
.................................CCTGAAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	42.00	1.00	1.00	1.00	39.00
.................................CCTAGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	42.00	0.00	3.00	5.00	34.00
.................................CCTGGAATTAAGTTGACTGTGTAC.......................................................................................................................	24	1	41.00	0.00	0.00	0.00	41.00
............................................................................................GTCAGCAACTTxATTCCAGCAA..............................................................	21	1	41.00	0.00	2.00	3.00	36.00
.................................CCTGGAATTAAGTTGACTATGTAGCC.....................................................................................................................	26	1	40.00	0.00	0.00	4.00	36.00
.......................................ATTAAGTTGACTGTGTAGC......................................................................................................................	19	1	40.00	4.00	2.00	3.00	31.00
.................................CCTGGGATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	40.00	0.00	2.00	4.00	34.00
............................................................................................GTCAGCAACTTGATTCCAGAA...............................................................	21	1	40.00	0.00	1.00	39.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAAA......................................................................................................................	25	1	40.00	0.00	0.00	1.00	39.00
.................................CCTGGAATTAATTTGACTGTGTAGC......................................................................................................................	25	1	40.00	0.00	1.00	1.00	38.00
.................................CCTGGAATTAAGTTGACTGTGAAGCC.....................................................................................................................	26	1	38.00	0.00	1.00	7.00	30.00
.................................CCTGGAATTAAGTTGGCTGTGTAGC......................................................................................................................	25	1	38.00	0.00	0.00	2.00	36.00
.................................CCTGGAGTTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	37.00	0.00	1.00	1.00	35.00
.................................CCTGGAATTAAGTCGACTGTGTAGCC.....................................................................................................................	26	1	37.00	0.00	0.00	4.00	33.00
.................................CCTGGAATTAAGTTAACTGTGTAGCC.....................................................................................................................	26	1	37.00	0.00	0.00	7.00	30.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	37.00	0.00	4.00	6.00	27.00
............................................................................................GTCAGCAACTTTATTCCAGCAA..............................................................	22	1	37.00	0.00	2.00	4.00	31.00
............................................................................................GTCAGCAACTTGATTCCAGCACCT............................................................	24	1	37.00	0.00	0.00	2.00	35.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	37.00	2.00	0.00	12.00	23.00
............................................................................................GTCAGCAACTTTATTCCAGCA...............................................................	21	1	36.00	0.00	1.00	8.00	27.00

droVir3

ATA---------AATGGAAATTGCGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAAGG-GAAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCC-CAAGGACAACGTTGGAAAGTGTC------------------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	14140.00	605.00	580.00	43.00	2738.00	10174.00
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	9039.00	154.00	196.00	23.00	1575.00	7091.00
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	2435.00	165.00	1637.00	21.00	112.00	500.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	2292.00	250.00	233.00	2.00	589.00	1218.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	1771.00	299.00	817.00	50.00	169.00	436.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	809.00	72.00	190.00	0.00	113.00	434.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	751.00	6.00	88.00	0.00	66.00	591.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	338.00	1.00	12.00	0.00	43.00	282.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	322.00	18.00	9.00	0.00	89.00	206.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	295.00	1.00	27.00	0.00	34.00	233.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	260.00	20.00	156.00	0.00	15.00	69.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	234.00	40.00	38.00	0.00	44.00	112.00
.................................CCTGGAATTAAGTTGACTGTGTAGAC.....................................................................................................................	26	1	172.00	0.00	0.00	0.00	21.00	151.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	137.00	9.00	76.00	2.00	4.00	46.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCC....................................................................................................................	27	1	131.00	5.00	1.00	1.00	59.00	65.00
.................................CCTGGAATTAAGTTGACTGTGTAGCT.....................................................................................................................	26	1	118.00	2.00	1.00	0.00	31.00	84.00
.................................CCTGGAATTAAGTTGACTGTGTAGA......................................................................................................................	25	1	116.00	7.00	3.00	0.00	38.00	68.00
.................................CCTGGAATTAAGTTGACTGTGTGG.......................................................................................................................	24	1	101.00	0.00	0.00	0.00	36.00	65.00
.................................CCTGGAATTAAGTTGACTGTGG.........................................................................................................................	22	1	100.00	0.00	0.00	0.00	13.00	87.00
.................................CCTGGAATTAAGTTGACTGTGC.........................................................................................................................	22	1	96.00	0.00	0.00	0.00	12.00	84.00
..............TGGAAATTGCGTTGCAGTT...............................................................................................................................................	19	1	95.00	26.00	63.00	6.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGT...........................................................................................................................	20	1	74.00	2.00	28.00	0.00	3.00	41.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	68.00	8.00	29.00	2.00	6.00	23.00
.................................CCTGGAATTAAGTTGACTGTGTAA.......................................................................................................................	24	1	65.00	5.00	4.00	0.00	23.00	33.00
............................................................................................GGCAGCAACTTGATTCCAGCA...............................................................	21	1	60.00	0.00	60.00	0.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGG......................................................................................................................	25	1	58.00	1.00	0.00	0.00	23.00	34.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	49.00	1.00	33.00	0.00	1.00	14.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	41.00	2.00	23.00	0.00	0.00	16.00
.................................CCTGGAATTAAGTTGACTGTGTAAC......................................................................................................................	25	1	32.00	1.00	1.00	0.00	4.00	26.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	26.00	0.00	14.00	0.00	0.00	12.00
.................................CCTGGAATTAAGTTGACTGGGTAGC......................................................................................................................	25	1	26.00	0.00	0.00	0.00	7.00	19.00
............................................................................................GGCAGCAACTTGATTCCAGCAA..............................................................	22	1	23.00	1.00	21.00	1.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGTTTAGCC.....................................................................................................................	26	1	22.00	0.00	2.00	0.00	5.00	15.00
............................................................................................GTCAGCAACTTGATTCCAGCG...............................................................	21	1	22.00	0.00	2.00	0.00	6.00	14.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	21.00	3.00	2.00	0.00	5.00	11.00
.................................CCTGGAATTAAGTTGACTGTGCAGC......................................................................................................................	25	1	20.00	1.00	7.00	0.00	1.00	11.00
.................................CCTGGAATTAAGTTGACTGTGTAGCA.....................................................................................................................	26	1	19.00	1.00	0.00	0.00	8.00	10.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCG....................................................................................................................	27	1	19.00	0.00	0.00	0.00	7.00	12.00
.................................CCTGGAATTAAGTTGACTGTGTAC.......................................................................................................................	24	1	18.00	0.00	0.00	0.00	7.00	11.00
.............ATGGAAATTGCGTTGCAGTT...............................................................................................................................................	20	1	17.00	12.00	5.00	0.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAG..............................................................	22	1	17.00	1.00	4.00	0.00	3.00	9.00
.................................CCTGGAATTAAGTTGACT.............................................................................................................................	18	1	17.00	0.00	2.00	0.00	0.00	15.00
.................................CCTGGAATTAAGTTGACTGGGTAGCC.....................................................................................................................	26	1	15.00	0.00	0.00	0.00	2.00	13.00
.................................CCTGGAATTAAGTTGACTGTAG.........................................................................................................................	22	1	14.00	0.00	0.00	0.00	3.00	11.00
.................................CCTGGAATTAAGTTGACTGCGTAGC......................................................................................................................	25	1	14.00	0.00	1.00	0.00	3.00	10.00
.................................CCTGGAATTAAGTTGGCTGTGTAGCC.....................................................................................................................	26	1	14.00	0.00	0.00	0.00	2.00	12.00
.................................CCTGGAATTAAGTTGACTGTTTAGC......................................................................................................................	25	1	14.00	2.00	1.00	0.00	4.00	7.00
.................................CCTGGAATTAAGTTGACTGTGTAT.......................................................................................................................	24	1	14.00	0.00	4.00	0.00	1.00	9.00
............................................................................................GTCAGCAACTTGCTTCCAGCA...............................................................	21	1	14.00	0.00	14.00	0.00	0.00	0.00
.................................CCTGAAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	13.00	0.00	0.00	0.00	2.00	11.00
.................................CCTGGAATTAAGCTGACTGTGTAGCC.....................................................................................................................	26	1	13.00	1.00	1.00	0.00	2.00	9.00
.................................CCTGGAATTAAGTTGACTGCGTAGCC.....................................................................................................................	26	1	13.00	1.00	2.00	0.00	3.00	7.00
............................................................................................GTCAGCAACTTGATTCCAGCCA..............................................................	22	1	13.00	0.00	12.00	1.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAAA......................................................................................................................	25	1	13.00	0.00	1.00	0.00	2.00	10.00
.......................................ATTAAGTTGACTGTGTAGCC.....................................................................................................................	20	1	13.00	0.00	1.00	0.00	5.00	7.00
.................................CCTGGAATTAAGTTGACTTTGTAGCC.....................................................................................................................	26	1	12.00	0.00	0.00	1.00	6.00	5.00
.................................CCTGGAATTAAGTTGACTGTGCAGCC.....................................................................................................................	26	1	12.00	0.00	2.00	0.00	2.00	8.00
.................................CCTGGAATTAAGTTGACTGTGTATC......................................................................................................................	25	1	12.00	1.00	9.00	2.00	0.00	0.00
.......................................ATTAAGTTGACTGTGTAGC......................................................................................................................	19	1	11.00	3.00	0.00	0.00	1.00	7.00
.................................CCTGGAATTAAGTTGGCTGTGTAGC......................................................................................................................	25	1	11.00	0.00	1.00	0.00	0.00	10.00
.................................CCTGGAATTAAGTTGACTGTGTT........................................................................................................................	23	1	11.00	2.00	1.00	0.00	0.00	8.00
.................................CCTGGAATTAAGTTGACTGTGTAGT......................................................................................................................	25	1	10.00	0.00	2.00	0.00	3.00	5.00
.................................CCTGGAATTAAGTTGACTGTCTAGC......................................................................................................................	25	1	10.00	1.00	2.00	2.00	1.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTAGCG.....................................................................................................................	26	1	10.00	0.00	0.00	0.00	2.00	8.00
.................................CCTGGAATTAAGCTGACTGTGTAGC......................................................................................................................	25	1	10.00	1.00	3.00	0.00	1.00	5.00
............................................................................................GTCAGCAACTTGATTCCAGCACC.............................................................	23	1	10.00	0.00	0.00	0.00	4.00	6.00
.................................CCCGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	10.00	1.00	0.00	0.00	1.00	8.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	9.00	1.00	2.00	0.00	0.00	6.00
.................................TCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	9.00	0.00	6.00	1.00	1.00	1.00
............................................................................................GTCAGAAACTTGATTCCAGCA...............................................................	21	1	9.00	0.00	8.00	0.00	0.00	1.00
.................................CCTGGAATTAAGTTGACTGG...........................................................................................................................	20	1	9.00	0.00	0.00	0.00	1.00	8.00
.................................CCTGGGATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	9.00	0.00	2.00	0.00	3.00	4.00
.................................CCTGGAATTAAGTTGACTxTGTAG.......................................................................................................................	23	1	9.00	1.00	0.00	0.00	4.00	4.00
.................................CCTGGAATTAAGTTGACTGTGTTT.......................................................................................................................	24	1	9.00	0.00	0.00	0.00	3.00	6.00
............................................................................................GTCAGCAACTTGATTCAAGCA...............................................................	21	1	9.00	0.00	8.00	0.00	1.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTATCC.....................................................................................................................	26	1	9.00	0.00	7.00	2.00	0.00	0.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	9.00	0.00	3.00	0.00	1.00	5.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	9.00	0.00	3.00	0.00	1.00	5.00
.................................CCTGGAATTAAGTTGATTGTGTAGC......................................................................................................................	25	1	9.00	1.00	1.00	0.00	4.00	3.00
.................................CCTGGAATTAAGTTGACTGTxTAGCC.....................................................................................................................	25	1	8.00	0.00	0.00	0.00	1.00	7.00
............................................................................................GTCAGCAACTTGATTCCACCA...............................................................	21	1	8.00	0.00	8.00	0.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCACT.............................................................	23	1	8.00	0.00	1.00	0.00	1.00	6.00
............................................................................................GTCAGCAACTTGTTTCCAGCA...............................................................	21	1	8.00	0.00	8.00	0.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCT..................................................................	18	1	8.00	0.00	0.00	0.00	2.00	6.00
.................................CCTGGAATTAAGTTGACTGTTTAG.......................................................................................................................	24	1	7.00	0.00	1.00	0.00	1.00	5.00
.................................CCTTGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	7.00	0.00	0.00	0.00	2.00	5.00
.................................CCTGGAATTAAGTTGACTGCGTAG.......................................................................................................................	24	1	7.00	1.00	1.00	0.00	2.00	3.00
.................................CCTGGAATTAATTTGACTGTGTAGCC.....................................................................................................................	26	1	7.00	0.00	0.00	0.00	3.00	4.00
.................................CCTGGAATTAAGTTGACTTTGTAG.......................................................................................................................	24	1	7.00	0.00	0.00	0.00	7.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGT................................................................	20	1	7.00	0.00	2.00	0.00	0.00	5.00
...............................................................................................AGCAACTTGATTCCAGCAA..............................................................	19	1	7.00	1.00	6.00	0.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCGGCA...............................................................	21	1	7.00	0.00	7.00	0.00	0.00	0.00
.................................CCTGAAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	7.00	0.00	0.00	0.00	1.00	6.00
.................................CCTGGAATTAAGTTGACTGTGAAGC......................................................................................................................	25	1	7.00	3.00	1.00	0.00	2.00	1.00
..................................CCTGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	7.00	0.00	0.00	0.00	0.00	7.00
.................................CCTGGAATTAAGGTGACTGTGTAGC......................................................................................................................	25	1	7.00	0.00	7.00	0.00	0.00	0.00
............................................................................................GTCAGCAACTTGGTTCCAGCA...............................................................	21	1	7.00	1.00	6.00	0.00	0.00	0.00
.................................CCCGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	7.00	0.00	0.00	0.00	1.00	6.00
............................................................................................GACAGCAACTTGATTCCAGCA...............................................................	21	1	7.00	1.00	6.00	0.00	0.00	0.00
.................................CCTGGCATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	6.00	0.00	5.00	0.00	1.00	0.00

droMoj3

TGT---------AT---TAATTGCGTTGCAGTTCCTGGAATAAAGTTGACTGTGTCGCCTGTAAGGG-GAAGGCTTTTGCATTGCTTACAAAGTCAGCAACTTGATTCCAGCAACTGCGGCC-CAAG---------------------------------------CTCAACGTGG	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	3221.00	409.00	1522.00	1276.00	14.00
.................................CCTGGAATAAAGTTGACTGTGTCG.......................................................................................................................	24	1	2694.00	1825.00	567.00	302.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCGC......................................................................................................................	25	1	2320.00	1057.00	859.00	393.00	11.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	1935.00	537.00	776.00	602.00	20.00
.................................CCTGGAATAAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	1052.00	433.00	430.00	184.00	5.00
.................................CCTGGAATAAAGTTGACTGTGT.........................................................................................................................	22	1	446.00	287.00	107.00	52.00	0.00
.................................CCTGGAATAAAGTTGACTGTG..........................................................................................................................	21	1	305.00	128.00	119.00	58.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTC........................................................................................................................	23	1	251.00	139.00	71.00	40.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	206.00	36.00	89.00	81.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAAT.............................................................	23	1	139.00	5.00	79.00	54.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGC................................................................	20	1	97.00	9.00	43.00	45.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCATT.............................................................	23	1	72.00	0.00	42.00	30.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCGCCT....................................................................................................................	27	1	64.00	30.00	27.00	7.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	43.00	6.00	17.00	20.00	0.00
.................................CCTGGAATAAAGTTGACTGT...........................................................................................................................	20	1	42.00	17.00	17.00	8.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCA...............................................................	21	1	37.00	0.00	27.00	10.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	36.00	5.00	19.00	10.00	2.00
............................................................................................GTCAGCAACTTGATTCCAGCCA..............................................................	22	1	35.00	0.00	2.00	33.00	0.00
..T---------AT---TAATTGCGTTGCAGTT...............................................................................................................................................	19	1	35.00	5.00	16.00	13.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGCAC..............................................................	22	1	32.00	3.00	16.00	11.00	2.00
............................................................................................GTCAGCAACTTGATTCCAGCC...............................................................	21	1	31.00	0.00	9.00	22.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCGCT.....................................................................................................................	26	1	29.00	14.00	10.00	5.00	0.00
............................................................................................GTCAGCAACTTGATTCCAG.................................................................	19	1	29.00	1.00	15.00	13.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCGT......................................................................................................................	25	1	28.00	10.00	13.00	5.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCT.......................................................................................................................	24	1	25.00	6.00	12.00	7.00	0.00
............................................................................................GTCAGCAACTTGATTCCATCA...............................................................	21	1	23.00	0.00	8.00	15.00	0.00
............................................................................................GTCAGCAACTTGATTCCCGCA...............................................................	21	1	21.00	0.00	0.00	20.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	20.00	5.00	6.00	9.00	0.00
.................................CCTGGAATAAAGTTGACTG............................................................................................................................	19	1	20.00	14.00	3.00	3.00	0.00
............................................................................................GTCAGCAACTTGCTTCCAGCA...............................................................	21	1	20.00	0.00	11.00	9.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCATTT............................................................	24	1	19.00	0.00	12.00	7.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCTC......................................................................................................................	25	1	19.00	2.00	6.00	11.00	0.00
............AT---TAATTGCGTTGCAGTT...............................................................................................................................................	18	1	19.00	1.00	9.00	6.00	3.00
...............................................................................................AGCAACTTGATTCCAGCA...............................................................	18	1	18.00	0.00	9.00	9.00	0.00
..................................CTGGAATAAAGTTGACTGTGTCG.......................................................................................................................	23	1	17.00	11.00	3.00	3.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCGA......................................................................................................................	25	1	15.00	11.00	4.00	0.00	0.00
.................................CCTGGAATAAAGTTGACTGTT..........................................................................................................................	21	1	14.00	11.00	3.00	0.00	0.00
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	14.00	8.00	3.00	3.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCAA..............................................................	22	1	14.00	1.00	9.00	4.00	0.00
............................................................................................GACAGCAACTTGATTCCAGCA...............................................................	21	1	13.00	0.00	13.00	0.00	0.00
............................................................................................GTCAGCAACTTGTTTCCAGCA...............................................................	21	1	13.00	0.00	9.00	4.00	0.00
............................................................................................GTCAGCAACTTGCTTCCAGCAA..............................................................	22	1	11.00	0.00	3.00	8.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCTT..............................................................	22	1	11.00	2.00	1.00	8.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAATT............................................................	24	1	11.00	2.00	5.00	4.00	0.00
............................................................................................GCCAGCAACTTGATTCCAGCA...............................................................	21	1	11.00	1.00	9.00	1.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCGCCTT...................................................................................................................	28	1	10.00	3.00	5.00	2.00	0.00
............................................................................................GTCAGCAACTTGGTTCCAGCA...............................................................	21	1	9.00	0.00	3.00	6.00	0.00
............................................................................................GTCAGCAACTTGATTCTAGCA...............................................................	21	1	9.00	2.00	3.00	4.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCTCC.....................................................................................................................	26	1	9.00	1.00	3.00	5.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCTA..............................................................	22	1	9.00	0.00	4.00	5.00	0.00
............................................................................................GTCCGCAACTTGATTCCAGCA...............................................................	21	1	8.00	0.00	5.00	3.00	0.00
............................................................................................GTAAGCAACTTGATTCCAGCA...............................................................	21	1	8.00	0.00	4.00	4.00	0.00
............................................................................................GTCAGCAACTTGATTCCGGCA...............................................................	21	1	8.00	0.00	5.00	3.00	0.00
............................................................................................GCCAGCAACTTGATTCCAGCAA..............................................................	22	1	8.00	2.00	5.00	1.00	0.00
...............................................................................................AGCAACTTGATTCCAGCAA..............................................................	19	1	8.00	0.00	5.00	3.00	0.00
............................................................................................GTCAGCAACCTGATTCCAGCA...............................................................	21	1	8.00	0.00	3.00	5.00	0.00
............................................................................................GTCAGCAACTTGATTTCAGCA...............................................................	21	1	7.00	0.00	4.00	3.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCA.......................................................................................................................	24	1	7.00	5.00	1.00	1.00	0.00
............................................................................................GTCAGCAGCTTGATTCCAGCA...............................................................	21	1	7.00	0.00	7.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCAAGCA...............................................................	21	1	7.00	0.00	6.00	1.00	0.00
............................................................................................GTCAGCAACTTGATTCCCGCAA..............................................................	22	1	7.00	0.00	0.00	7.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCACT.............................................................	23	1	7.00	2.00	1.00	4.00	0.00
..................................CTGGAATAAAGTTGACTGTGTCGC......................................................................................................................	24	1	7.00	4.00	2.00	1.00	0.00
.................................CCTGGAGTAAAGTTGACTGTGTCG.......................................................................................................................	24	1	7.00	3.00	2.00	2.00	0.00
............................................................................................GTCAGAAACTTGATTCCAGCA...............................................................	21	1	6.00	1.00	2.00	3.00	0.00
.................................ACTGGAATAAAGTTGACTGTGTCG.......................................................................................................................	24	1	6.00	3.00	3.00	0.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTCCC......................................................................................................................	25	1	6.00	1.00	3.00	2.00	0.00
............................................................................................GTCAGCAACTTGATCCCAGCA...............................................................	21	1	6.00	0.00	4.00	2.00	0.00
.................................CCTGGAATAAAGCTGACTGTGTCGC......................................................................................................................	25	1	6.00	0.00	5.00	1.00	0.00
.................................CCTGGAATAAAGTTGACTGTGCCGC......................................................................................................................	25	1	6.00	2.00	3.00	1.00	0.00
.................................CCTGGCATAAAGTTGACTGTGTCGC......................................................................................................................	25	1	6.00	0.00	2.00	4.00	0.00
............................................................................................GTCAGCAACTTGATTCCACCA...............................................................	21	1	6.00	0.00	3.00	3.00	0.00
.................................CCTGGAATAAAGATGACTGTGTCGC......................................................................................................................	25	1	6.00	2.00	3.00	1.00	0.00
.................................CCTGGAATAAAGTTGACTGTCG.........................................................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCATCAA..............................................................	22	1	6.00	0.00	1.00	5.00	0.00
.................................CCTGGAATAAAGTTGACTGTGTAGC......................................................................................................................	25	1	6.00	1.00	3.00	2.00	0.00
...........................................................................................AGTCAGCAACTTGATTCCAGCAA..............................................................	23	1	5.00	0.00	2.00	3.00	0.00
............................................................................................ATCAGCAACTTGATTCCAGCA...............................................................	21	1	5.00	0.00	3.00	2.00	0.00
............................................................................................GTCAGCAACTTGATTCCGGCAA..............................................................	22	1	5.00	1.00	2.00	2.00	0.00
.................................CCTGGAATAAAGTTGGCTGTGTCG.......................................................................................................................	24	1	5.00	3.00	1.00	1.00	0.00
............................................................................................GTCGGCAACTTGATTCCAGCAA..............................................................	22	1	5.00	1.00	2.00	2.00	0.00
.................................TCTGGAATAAAGTTGACTGTGTCG.......................................................................................................................	24	1	5.00	2.00	3.00	0.00	0.00
............................................................................................GTCAGCAACTTGACTCCAGCAA..............................................................	22	1	5.00	0.00	4.00	1.00	0.00
.................................CCTGGAATAAAGTTGCCTGTGTCG.......................................................................................................................	24	1	5.00	1.00	3.00	1.00	0.00
.................................CCTGGCATAAAGTTGACTGTGTCG.......................................................................................................................	24	1	5.00	0.00	3.00	2.00	0.00
.................................CCTGGAATAAAGTTGACTGTTTCGC......................................................................................................................	25	1	5.00	2.00	2.00	1.00	0.00
.................................CCTGGAATAAAGTTGACTGCGTCGC......................................................................................................................	25	1	5.00	3.00	2.00	0.00	0.00
............................................................................................GTAAGCAACTTGATTCCAGCAA..............................................................	22	1	5.00	0.00	4.00	1.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGCAATTT...........................................................	25	1	5.00	1.00	2.00	2.00	0.00
.................................CCTGGACTAAAGTTGACTGTGTCGC......................................................................................................................	25	1	5.00	1.00	2.00	2.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGT................................................................	20	1	5.00	0.00	2.00	3.00	0.00
.................................CCTGGAATAAAGTTGACTGCGTCGCC.....................................................................................................................	26	1	4.00	0.00	3.00	1.00	0.00
............................................................................................GTCATCAACTTGATTCCAGCA...............................................................	21	1	4.00	0.00	2.00	2.00	0.00
............................................................................................GTCACCAACTTGATTCCAGCA...............................................................	21	1	4.00	1.00	3.00	0.00	0.00
............................................................................................GTCAGCAACTTGATTCCAGAA...............................................................	21	1	4.00	0.00	3.00	1.00	0.00
............................................................................................GTCAGCCACTTGATTCCAGCA...............................................................	21	1	4.00	0.00	0.00	4.00	0.00
............................................................................................GTCAGCAACTTGCTTCCAGCC...............................................................	21	1	4.00	0.00	0.00	4.00	0.00
............................................................................................GTCAGCAACTTGATTCCCGCAC..............................................................	22	1	4.00	0.00	1.00	3.00	0.00
............................................................................................GGCAGCAACTTGATTCCAGCAT..............................................................	22	1	4.00	0.00	2.00	2.00	0.00
............................................................................................GTCAGCACCTTGATTCCAGCAA..............................................................	22	1	4.00	0.00	3.00	1.00	0.00
............................................................................................GGCAGCAACTTGTTTCCAGCA...............................................................	21	1	4.00	0.00	2.00	2.00	0.00

droGri2

ATA-----------TGGAAATTGGGTTGCAGTTCCTGGAATTAAGTTGACTGTGTAGCCTGTAAGAG-GAAGGCTTGTGCACTGCTTACAAAGTCAGCAACTTGATTCCAGCAATTGCGGCT-CAAA---------------------------------------CTCAACGTTG	Size	Hit Count	Total Norm	V109 Male body
.................................CCTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	318.00	318.00
.................................CCTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	306.00	306.00
..............TGGAAATTGGGTTGCAGTT...............................................................................................................................................	19	1	120.00	120.00
............................................................................................GTCAGCAACTTGATTCCAGCAA..............................................................	22	1	34.00	34.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	32.00	32.00
.................................CCTGGAATTAAGTTGACTGTGTAG.......................................................................................................................	24	1	22.00	22.00
.................................CCTGGAATTAAGTTGACTGTGTA........................................................................................................................	23	1	18.00	18.00
............................................................................................GTCAGCAACTTGATTCCAGCA...............................................................	21	1	12.00	12.00
.................................CCTGGAATTAAGTTGACCGTGTAGC......................................................................................................................	25	1	6.00	6.00
.................................CCTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	5.00	5.00
............................................................................................GTCAGCAACTTGATTCCAGCAT..............................................................	22	1	5.00	5.00
.................................CCTGGAATCAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	4.00	4.00
.................................CCTGGAATTAAGTTGACAGTGTAGCC.....................................................................................................................	26	1	4.00	4.00
.................................CCTGGAATCAAGTTGACTGTGTAGC......................................................................................................................	25	1	3.00	3.00
...............GGAAATTGGGTTGCAGTT...............................................................................................................................................	18	1	3.00	3.00
.................................CCCGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	3.00	3.00
.................................CCTGGAATAAAGTTGACTGTGTCG.......................................................................................................................	24	1	3.00	3.00
.................................CCTGGAATTAAGTTGACCGTGTAGCC.....................................................................................................................	26	1	3.00	3.00
.................................CCTGGGATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	2.00	2.00
.................................CCTGGAATTAAGTTGACGGTGTAGCC.....................................................................................................................	26	1	2.00	2.00
..................................CTGGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	2.00	2.00
.................................CCTGGAATTAAGTTGACTGTG..........................................................................................................................	21	1	2.00	2.00
.................................CCTGGAATTAAGTTGACTGTGTTGCC.....................................................................................................................	26	1	2.00	2.00
.................................CCTGGACTTAAGTTGACTGTGTAGC......................................................................................................................	25	1	2.00	2.00
.................................CCTGGGATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	2.00	2.00
.................................CCTGGCATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	2.00	2.00
.................................CCTGGAATTAAGTTGACAGTGTAGC......................................................................................................................	25	1	2.00	2.00
.................................CCTGGAATTAACTTGACTGTGTAGC......................................................................................................................	25	1	2.00	2.00
.................................CCTGGAATTAAGTTGACTGTGTTGC......................................................................................................................	25	1	2.00	2.00
.................................CCTGGAATGAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	2.00	2.00
..................................CCTGAATTAAGTTGACTGTGTAGC......................................................................................................................	24	1	2.00	2.00
.................................CCTGGACTTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	2.00	2.00
.................................CCTGGAATTAAGTTGCCTGTGTAAC......................................................................................................................	25	1	1.00	1.00
.................................CCTGCAATTAAGTTGACTCTGTAGC......................................................................................................................	25	1	1.00	1.00
ATA-----------TGGAAATTGGGTTGCAGTT...............................................................................................................................................	22	1	1.00	1.00
..............TGGGAATTGGGTTGCAGTT...............................................................................................................................................	19	1	1.00	1.00
.................................CCAGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	1.00	1.00
.................................CGTGGAATTAAGTTGACTGTGT.........................................................................................................................	22	1	1.00	1.00
.................................CCTGGAATTAAGCTGACTGTGTAGC......................................................................................................................	25	1	1.00	1.00
.................................CCTGGAATTAGGTTGACTGTGTAGCC.....................................................................................................................	26	1	1.00	1.00
..............TGGAAATTGGGTTACAGTT...............................................................................................................................................	19	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTCG.......................................................................................................................	24	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTC........................................................................................................................	23	1	1.00	1.00
............................................................................................GCCAGCAACTTGATTCCAGCAA..............................................................	22	1	1.00	1.00
..............TGGAAATTGGGTTGCACTT...............................................................................................................................................	19	1	1.00	1.00
.................................CCTGGAATTAAGTTGATTGTGTA........................................................................................................................	23	1	1.00	1.00
..............TGGAAACTGGGTTGCAGTT...............................................................................................................................................	19	1	1.00	1.00
............................................................................................GTCAGCAACTTGATTCCCGCAA..............................................................	22	1	1.00	1.00
.................................CCCGGAATTAAGTTGACTGTGTAT.......................................................................................................................	24	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTGGC......................................................................................................................	25	1	1.00	1.00
............................................................................................GTCAGCCACTTGATTCCAGCAA..............................................................	22	1	1.00	1.00
.................................CCTGGAGTTAAGTTGACTGTGTA........................................................................................................................	23	1	1.00	1.00
.................................CCCGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	1.00	1.00
...............GGAAATTGCGTTGCAGTT...............................................................................................................................................	18	1	1.00	1.00
.................................CCTGGAATAAAGTTGACTGTGTTG.......................................................................................................................	24	1	1.00	1.00
.TA-----------TGGAAATTGGGTTGCAGTT...............................................................................................................................................	21	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTG............................................................................................................................	19	1	1.00	1.00
.................................CCTGGCATTAAGTTGACTGTGTA........................................................................................................................	23	1	1.00	1.00
.................................CCTGGAATTAAGCTGACTGTGTAGCC.....................................................................................................................	26	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTCTAGC......................................................................................................................	25	1	1.00	1.00
.................................CCTGGAATTAAGTTCACTGTGTAGC......................................................................................................................	25	1	1.00	1.00
.................................CCTGCAATTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	1.00	1.00
............................................................................................GTCATCAACTTGATTCCAGCAA..............................................................	22	1	1.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGCT...............................................................	21	1	1.00	1.00
..............TGGAAATTGGGTTGCAGAT...............................................................................................................................................	19	1	1.00	1.00
.................................CCAGGAATTAAGTTGACTGTGTAGCCT....................................................................................................................	27	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTATC......................................................................................................................	25	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTCGC......................................................................................................................	25	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTAGCCTT...................................................................................................................	28	1	1.00	1.00
............................................................................................GTCAGCAACTTGATTCCAGCAAA.............................................................	23	1	1.00	1.00
.................................CCTGGAATTTATTTGACTGTGTAGCC.....................................................................................................................	26	1	1.00	1.00
.................................CCTGGAATAAAGTTGACTGTCTAGC......................................................................................................................	25	1	1.00	1.00
..A-----------TGGAAATTGGGTTGCAGTT...............................................................................................................................................	20	1	1.00	1.00
..................................CCTGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	1.00	1.00
.................................CCTGGAATTAACTTGACTGTGTAGCC.....................................................................................................................	26	1	1.00	1.00
.................................CCTGGAATAAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	1.00	1.00
.................................CCTGGAATTAAGTTGACTGTGTCGCC.....................................................................................................................	26	1	1.00	1.00
..............TGTAAATTGGGTTGCAGTT...............................................................................................................................................	19	1	1.00	1.00
...............TGAAATTGGGTTGCAGTT...............................................................................................................................................	18	1	1.00	1.00
..................................CTGGAATTAAGTTGACTGTGTAGCC.....................................................................................................................	25	1	1.00	1.00
.................................CATGGAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	1.00	1.00
.................................CCTGGATTTAAGTTGACTGTGTAGCC.....................................................................................................................	26	1	1.00	1.00
.................................CCTGTAATTAAGTTGACTGTGTAGC......................................................................................................................	25	1	1.00	1.00
.................................CCTGGAATAAAGTTGACTGTGTCGC......................................................................................................................	25	1	1.00	1.00
..............TGCAAATTGGGTTGCAGTT...............................................................................................................................................	19	1	1.00	1.00
..............TGGAGATTGGGTTGCAGTT...............................................................................................................................................	19	1	1.00	1.00

Generated: 04/20/2012 at 05:21:49 EDT

dme-mir-284

chr3R:8377237-8377336 -

Known_mirbase

three_prime_UTR

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup