dme-mir-252- Best orthologs

dme-mir-252	chr3R:9289941-9290033 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 9289997-9290018
   star strand at position 9289953-9289974
   mutations
   read mismatches

Notes: Fully conserved.

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:9289926-9290048 -		1	GTG-------TGCCGCCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droSim1	chr3R_random:533427-533549 -	LASTZ	1	GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droSec1	super_0:12715202-12715324 +	LASTZ	1	GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droYak2	chr3R:13598006-13598135 -	LASTZ	1	GTGCTAGATGTACGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droEre2	scaffold_4770:12350666-12350788 +	LASTZ	1	GTG-------CTAGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droEug1	scf7180000409802:705185-705307 +	LASTZ	4	ATA-------TCGTGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTGCAACAA-------A--GAAA
droBia1	scf7180000302402:2002521-2002644 -	LASTZ	4	TCC-------CAGTGCCCACTT----------------------------------------------------------AC-C-GAGCTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAAGTTGTCCACCGC-------A--AGTG
droTak1	scf7180000415380:69928-70047 -	LASTZ	4	GAG-------TGC---CTACTT----------------------------------------------------------AC-C-GAGCTCACTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCATCAG-------T--ATGA
droEle1	scf7180000491047:1912675-1912796 +	LASTZ	4	GTG-------TATCAGTTACTT----------------------------------------------------------AC-C-AAGTGCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAACAT-------T---GAA
droRho1	scf7180000778831:19479-19601 -	LASTZ	4	TGG-------CAGCTATTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAACAG-------T--GAAA
droFic1	scf7180000453906:210236-210357 +	LASTZ	4	GAG-------TG---ATTACTT----------------------------------------------------------AC-C-GAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCCTATCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGA-GTTGTCCATCAA-------TGAAGAA
droKik1	scf7180000302392:529160-529299 +	LASTZ	4	GCT-------T-------TCTTCCGAAAGGAAAATCCCAAGCCGAT----------------------------------GC-C-GAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GATGCCCAACCT-------G--CTAG
droAna3	scaffold_13340:1848657-1848824 -	LASTZ	1	GAG-------T-------ACTTAG-----------CCCCAACCATTGGTAAATATTGATTTTATACTTACATTA--CTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAGCAAAATACA-A--GGAA
droBip1	scf7180000396712:2482763-2482924 +	LASTZ	4	GAG-------T-------ACTTAC-----------CCCAAACCAATGGTAAATATTGATTTTGTACTTAC-TTA--CTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAGCGAAAT--------ACA
dp4	chr2:16736618-16736739 -	LASTZ	1	TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA
droPer1	super_0:3659179-3659300 +	LASTZ	1	TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA
droWil1	scaffold_181130:6363211-6363342 -	LASTZ	1	GAT-------GGATCAATACTT----------------------------------------------AC-TTGAAC--GAAGC--GTATTGCTTTACTAAGTACTAGTGCCGCAGGAGTTTGGTTCGTGTCCGTAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGA-CTTTACCTACTT-------A--AAAA
droVir3	scaffold_12855:2861518-2861626 +	LASTZ	1	T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAAGCGACTA-GTTTTCCACCAGCA-ACAATTAGAAA
droMoj3	scaffold_6540:10349255-10349360 -	LASTZ	1	T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGGTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATCAAAGCGACGA-GTTTTTCAACAGCA-GCA-A--TTAA
droGri2	scaffold_14906:3807816-3807948 -	LASTZ	1	TTG-------TGGCACTTACTT---------------------------------------------------GAGCTTGATGC--GTATTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAGGCGACGA-ATTTTCCAACAATGT----G--CGAG

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	GTG-------TGCCGCCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droSim1	GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droSec1	GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droYak2	GTGCTAGATGTACGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droEre2	GTG-------CTAGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA
droEug1	ATA-------TCGTGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTGCAACAA-------A--GAAA
droBia1	TCC-------CAGTGCCCACTT----------------------------------------------------------AC-C-GAGCTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAAGTTGTCCACCGC-------A--AGTG
droTak1	GAG-------TGC---CTACTT----------------------------------------------------------AC-C-GAGCTCACTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCATCAG-------T--ATGA
droEle1	GTG-------TATCAGTTACTT----------------------------------------------------------AC-C-AAGTGCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAACAT-------T---GAA
droRho1	TGG-------CAGCTATTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAACAG-------T--GAAA
droFic1	GAG-------TG---ATTACTT----------------------------------------------------------AC-C-GAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCCTATCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGA-GTTGTCCATCAA-------TGAAGAA
droKik1	GCT-------T-------TCTTCCGAAAGGAAAATCCCAAGCCGAT----------------------------------GC-C-GAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GATGCCCAACCT-------G--CTAG
droAna3	GAG-------T-------ACTTAG-----------CCCCAACCATTGGTAAATATTGATTTTATACTTACATTA--CTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAGCAAAATACA-A--GGAA
droBip1	GAG-------T-------ACTTAC-----------CCCAAACCAATGGTAAATATTGATTTTGTACTTAC-TTA--CTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAGCGAAAT--------ACA
dp4	TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA
droPer1	TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA
droWil1	GAT-------GGATCAATACTT----------------------------------------------AC-TTGAAC--GAAGC--GTATTGCTTTACTAAGTACTAGTGCCGCAGGAGTTTGGTTCGTGTCCGTAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGA-CTTTACCTACTT-------A--AAAA
droVir3	T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAAGCGACTA-GTTTTCCACCAGCA-ACAATTAGAAA
droMoj3	T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGGTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATCAAAGCGACGA-GTTTTTCAACAGCA-GCA-A--TTAA
droGri2	TTG-------TGGCACTTACTT---------------------------------------------------GAGCTTGATGC--GTATTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAGGCGACGA-ATTTTCCAACAATGT----G--CGAG

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	6904.00	4129.00	1967.00	647.00	161.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	1274.00	320.00	778.00	149.00	27.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	936.00	7.00	838.00	84.00	7.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	833.00	324.00	308.00	165.00	36.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	556.00	2.00	449.00	93.00	12.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	334.00	15.00	259.00	58.00	2.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	213.00	60.00	123.00	27.00	3.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	135.00	53.00	60.00	12.00	10.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	115.00	49.00	52.00	12.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	107.00	0.00	92.00	11.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAGGG..................................................................................	21	1	101.00	4.00	74.00	22.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	90.00	61.00	20.00	5.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	75.00	73.00	0.00	2.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGG................................................................................	23	1	68.00	0.00	35.00	27.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAGGATT................................................................................	23	1	49.00	0.00	42.00	6.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	37.00	4.00	19.00	9.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	35.00	22.00	7.00	6.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	33.00	30.00	2.00	0.00	1.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	30.00	3.00	24.00	2.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	29.00	0.00	28.00	1.00	0.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	27.00	19.00	7.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	26.00	26.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	19.00	5.00	12.00	2.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	17.00	14.00	2.00	1.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	16.00	9.00	6.00	0.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	16.00	15.00	1.00	0.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATTA....................................	22	1	16.00	16.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	16.00	0.00	10.00	2.00	4.00
..................................................................................................TAAGTACTAGTGCCGCAGGAC.................................................................................	21	1	15.00	0.00	10.00	5.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	15.00	13.00	1.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	13.00	3.00	8.00	2.00	0.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	13.00	2.00	9.00	1.00	1.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	11.00	3.00	7.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGT...................................................................................	20	1	11.00	0.00	10.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	11.00	11.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGACT................................................................................	23	1	11.00	0.00	10.00	1.00	0.00
.......................................................................................................................TTAGGTTCGTGTCCGCAATAC............................................................	21	1	11.00	0.00	10.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	11.00	6.00	3.00	2.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	11.00	1.00	8.00	2.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGACT................................................................................	21	1	10.00	0.00	8.00	1.00	1.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	10.00	5.00	5.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	10.00	10.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAC.................................................................................	22	1	9.00	0.00	7.00	2.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGG................................................................................	22	1	9.00	0.00	4.00	4.00	1.00
..................................................................................................TAAGTACTAGTGCCGCAGGAT.................................................................................	21	1	9.00	0.00	9.00	0.00	0.00
.................................................................................................CTAAGTACTATTGCCGCAGGA..................................................................................	21	1	8.00	0.00	5.00	3.00	0.00
.................................................................................................CTAAGTACTGGTGCCGCAGGA..................................................................................	21	1	8.00	0.00	7.00	1.00	0.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	8.00	3.00	4.00	1.00	0.00
.................................................................................................CTAAGTACTACTGCCGCAGGA..................................................................................	21	1	8.00	0.00	8.00	0.00	0.00
............................................................................................................................................CTCCTGCTGCCCAAGTGCTTATT.....................................	23	1	7.00	2.00	4.00	1.00	0.00
...............................................................................................................................................CTGCTGCCCAAGTGCTTATTA....................................	21	1	7.00	7.00	0.00	0.00	0.00
.......................................................................................................................TTAGGTTCGTGTCCGCAATACCT..........................................................	23	1	7.00	2.00	4.00	0.00	1.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	7.00	6.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	7.00	5.00	2.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	7.00	5.00	2.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGAA...............................................................................	24	1	7.00	0.00	6.00	1.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	7.00	0.00	6.00	1.00	0.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	7.00	6.00	0.00	1.00	0.00
................................................................................................GCTAAGTACTAGTGCCGCAGGAG.................................................................................	23	1	6.00	1.00	3.00	0.00	2.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	6.00	1.00	1.00	3.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCGT................................................................................	23	1	6.00	6.00	0.00	0.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	6.00	3.00	2.00	1.00	0.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	6.00	6.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	6.00	5.00	1.00	0.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGC................................................................................	22	1	6.00	0.00	4.00	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	6.00	6.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	6.00	5.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCxCAGGAG.................................................................................	21	1	6.00	0.00	5.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	6.00	4.00	2.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGTT..................................................................................	21	1	5.00	0.00	4.00	1.00	0.00
.................................................................................................CTAAGTACTAGTxCCGCAGGAG.................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	5.00	0.00	3.00	2.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	5.00	4.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	5.00	0.00	5.00	0.00	0.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	5.00	4.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	5.00	4.00	0.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAC....................................................................................	19	1	5.00	0.00	4.00	1.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAGT................................................................................	23	1	5.00	4.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	5.00	4.00	1.00	0.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGA..................................................................................	21	1	5.00	2.00	3.00	0.00	0.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	5.00	1.00	3.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	5.00	4.00	1.00	0.00	0.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGAG.................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAGT................................................................................	23	1	5.00	0.00	3.00	2.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	4.00	3.00	1.00	0.00	0.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGG...................................................................................	19	1	4.00	0.00	4.00	0.00	0.00
.................................................................................................ATAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAG.................................................................................	20	1	4.00	0.00	3.00	1.00	0.00
.................................................................................................CTAAATACTAGTGCCGCAGGAG.................................................................................	22	1	4.00	3.00	0.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGACGAAGGAG.................................................................................	22	1	4.00	4.00	0.00	0.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATTA....................................	23	1	4.00	4.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTxxTGCCGCAGGAGT................................................................................	21	1	4.00	0.00	1.00	1.00	2.00
.................................................................................................CTAAGTACTAGGGCCGCAGGA..................................................................................	21	1	4.00	1.00	2.00	0.00	1.00
.......................................................................................................................TTAGGTTCGTGTCCGCAATACC...........................................................	22	1	4.00	1.00	2.00	0.00	1.00

droSec1

GTG-------TGCCGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	141698.00	18643.00	15441.00	107614.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	23802.00	2018.00	942.00	20842.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	11951.00	1085.00	412.00	10454.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	2887.00	288.00	286.00	2313.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	2697.00	195.00	52.00	2450.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	1847.00	214.00	40.00	1593.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	975.00	80.00	55.00	840.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	701.00	80.00	4.00	617.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	675.00	36.00	6.00	633.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	650.00	39.00	16.00	595.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	332.00	165.00	6.00	161.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	331.00	164.00	12.00	155.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	329.00	104.00	8.00	217.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	312.00	46.00	32.00	234.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	286.00	15.00	1.00	270.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	278.00	25.00	14.00	239.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	264.00	25.00	22.00	217.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	253.00	21.00	93.00	139.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	247.00	59.00	22.00	166.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	245.00	47.00	15.00	183.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	239.00	18.00	8.00	213.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	211.00	27.00	21.00	163.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	193.00	13.00	6.00	174.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	190.00	3.00	2.00	185.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	188.00	25.00	26.00	137.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	183.00	26.00	35.00	122.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	179.00	32.00	12.00	135.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	170.00	14.00	12.00	144.00
.................................................................................................CTAAGTACTxxTGCCGCAGGAG.................................................................................	20	1	166.00	20.00	20.00	126.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	164.00	21.00	14.00	129.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	161.00	32.00	15.00	114.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	143.00	8.00	5.00	130.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	142.00	18.00	24.00	100.00
.................................................................................................CTAAGTACTAGTGCCxCAGGAG.................................................................................	21	1	139.00	13.00	6.00	120.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	139.00	5.00	2.00	132.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	137.00	16.00	3.00	118.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	133.00	1.00	1.00	131.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	132.00	10.00	17.00	105.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	129.00	6.00	2.00	121.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTAT......................................	21	1	127.00	7.00	1.00	119.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	120.00	13.00	10.00	97.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	116.00	19.00	14.00	83.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	115.00	20.00	13.00	82.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	114.00	7.00	6.00	101.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	113.00	7.00	58.00	48.00
.................................................................................................CAAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	107.00	0.00	1.00	106.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	105.00	9.00	46.00	50.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTT........................................	19	1	98.00	5.00	1.00	92.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	97.00	10.00	11.00	76.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	97.00	17.00	19.00	61.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	94.00	17.00	6.00	71.00
.................................................................................................CTAAGTACTAGTxCCGCAGGAG.................................................................................	21	1	93.00	15.00	6.00	72.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	93.00	5.00	10.00	78.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	92.00	8.00	38.00	46.00
.................................................................................................CTAAGTACAAGTGCCGCAGGAG.................................................................................	22	1	91.00	3.00	7.00	81.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	91.00	1.00	4.00	86.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	89.00	4.00	13.00	72.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	89.00	9.00	8.00	72.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	87.00	28.00	9.00	50.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	80.00	10.00	7.00	63.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATTA....................................	22	1	77.00	5.00	20.00	52.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	77.00	11.00	16.00	50.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	75.00	7.00	10.00	58.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	72.00	22.00	7.00	43.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	69.00	8.00	29.00	32.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTTT..............................................................................	24	1	67.00	4.00	2.00	61.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	65.00	4.00	4.00	57.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	65.00	6.00	9.00	50.00
.................................................................................................CTAAGTACTAGTGCCGCAGT...................................................................................	20	1	59.00	5.00	1.00	53.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	58.00	9.00	8.00	41.00
.................................................................................................CTAAGTACTAGTGCCTCAGGA..................................................................................	21	1	56.00	9.00	1.00	46.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTA.......................................	20	1	56.00	0.00	1.00	55.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGAA...............................................................................	24	1	54.00	2.00	0.00	52.00
.................................................................................................CTAACTACTAGTGCCGCAGGAG.................................................................................	22	1	54.00	7.00	5.00	42.00
.................................................................................................CTAATTACTAGTGCCGCAGGAG.................................................................................	22	1	53.00	5.00	3.00	45.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAAA................................................................................	23	1	51.00	3.00	0.00	48.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGAG.................................................................................	22	1	51.00	6.00	6.00	39.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTAT..............................................................................	25	1	49.00	6.00	0.00	43.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTAA..............................................................................	25	1	48.00	4.00	0.00	44.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	48.00	5.00	2.00	41.00
.................................................................................................CTAAATACTAGTGCCGCAGGAG.................................................................................	22	1	48.00	7.00	3.00	38.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	48.00	6.00	6.00	36.00
.................................................................................................CTAAGTACTACTGCCGCAGGA..................................................................................	21	1	46.00	2.00	1.00	43.00
.................................................................................................CTAAGTACTAGTTCCGCAGGA..................................................................................	21	1	45.00	5.00	1.00	39.00
.................................................................................................CTAAGTACTAGTGCCGCAAGA..................................................................................	21	1	44.00	26.00	0.00	18.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTA..............................................................................	25	1	42.00	3.00	1.00	38.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	41.00	5.00	5.00	31.00
.................................................................................................CTAAGTACTATTGCCGCAGGA..................................................................................	21	1	41.00	1.00	1.00	39.00
.................................................................................................CTAAGTTCTAGTGCCGCAGGAG.................................................................................	22	1	40.00	4.00	15.00	21.00
.................................................................................................CTAAGAACTAGTGCCGCAGGA..................................................................................	21	1	40.00	1.00	0.00	39.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	39.00	2.00	5.00	32.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	38.00	3.00	8.00	27.00
.................................................................................................CTAAGTACTAGTGCCxCAGGA..................................................................................	20	1	38.00	1.00	0.00	37.00
.......................................................................................................................TTAGGTTCGTGTCCGCAATACCT..........................................................	23	1	37.00	13.00	17.00	7.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTTT.............................................................................	26	1	36.00	2.00	0.00	34.00
.................................................................................................CTAAGTACTAGTGCCGCACGA..................................................................................	21	1	35.00	24.00	0.00	11.00
.................................................................................................CTAAGTACTxxTGCCGCAGGA..................................................................................	19	1	35.00	0.00	1.00	34.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	35.00	3.00	15.00	17.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	35.00	4.00	1.00	30.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATTA....................................	23	1	34.00	1.00	7.00	26.00
.................................................................................................CTAAGTAATAGTGCCGCAGGA..................................................................................	21	1	34.00	0.00	0.00	34.00

droYak2

GTGCTAGATGTACGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	45525.00	4393.00	13086.00	2883.00	24234.00	929.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	5075.00	328.00	1458.00	359.00	2716.00	214.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	1539.00	306.00	331.00	138.00	610.00	154.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	1159.00	39.00	148.00	3.00	965.00	4.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	770.00	67.00	243.00	49.00	372.00	39.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	741.00	9.00	216.00	30.00	450.00	36.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	523.00	26.00	102.00	0.00	395.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	441.00	20.00	89.00	1.00	331.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	420.00	1.00	9.00	5.00	59.00	346.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	324.00	0.00	26.00	7.00	68.00	223.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	296.00	12.00	42.00	0.00	242.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	254.00	3.00	35.00	6.00	210.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	228.00	21.00	35.00	10.00	161.00	1.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	211.00	15.00	44.00	7.00	144.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	189.00	16.00	36.00	4.00	131.00	2.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	172.00	16.00	21.00	2.00	133.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	162.00	42.00	30.00	4.00	48.00	38.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	151.00	5.00	52.00	4.00	90.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	130.00	4.00	19.00	2.00	105.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	117.00	37.00	16.00	18.00	39.00	7.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	116.00	2.00	41.00	13.00	54.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	115.00	0.00	36.00	2.00	56.00	21.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	113.00	11.00	23.00	1.00	78.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGTG.................................................................................	22	1	106.00	1.00	18.00	0.00	87.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	104.00	2.00	10.00	0.00	90.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	95.00	4.00	37.00	4.00	45.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	88.00	22.00	17.00	8.00	27.00	14.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	80.00	4.00	20.00	0.00	56.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	79.00	8.00	18.00	0.00	53.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	78.00	0.00	18.00	2.00	27.00	31.00
.................................................................................................CTAAGTACTAGTGCCGCCGGCG.................................................................................	22	1	77.00	2.00	12.00	0.00	63.00	0.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	76.00	1.00	13.00	0.00	60.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	74.00	0.00	5.00	0.00	63.00	6.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	73.00	7.00	15.00	0.00	50.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	71.00	1.00	20.00	0.00	50.00	0.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	68.00	4.00	5.00	0.00	59.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	67.00	2.00	11.00	2.00	52.00	0.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	63.00	2.00	9.00	4.00	45.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	62.00	7.00	35.00	1.00	19.00	0.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	60.00	4.00	7.00	1.00	48.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGA..................................................................................	21	1	56.00	2.00	9.00	1.00	44.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	54.00	5.00	18.00	7.00	21.00	3.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	52.00	9.00	9.00	0.00	34.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGG..................................................................................	21	1	50.00	3.00	3.00	0.00	10.00	34.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	50.00	3.00	13.00	2.00	30.00	2.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	48.00	0.00	6.00	1.00	40.00	1.00
.................................................................................................CTAAGGACTAGTGCCGCAGGCG.................................................................................	22	1	45.00	3.00	3.00	0.00	39.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	44.00	1.00	10.00	1.00	20.00	12.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	44.00	2.00	7.00	3.00	31.00	1.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	44.00	2.00	13.00	5.00	24.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTT........................................	19	1	43.00	0.00	19.00	0.00	24.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	43.00	3.00	16.00	0.00	24.00	0.00
.................................................................................................CGAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	43.00	3.00	6.00	0.00	34.00	0.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	41.00	6.00	8.00	1.00	26.00	0.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	40.00	2.00	10.00	1.00	26.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	39.00	1.00	7.00	0.00	31.00	0.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	39.00	4.00	9.00	2.00	23.00	1.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	38.00	9.00	0.00	0.00	29.00	0.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	37.00	1.00	12.00	0.00	24.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	37.00	3.00	12.00	2.00	20.00	0.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	36.00	1.00	11.00	0.00	24.00	0.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	36.00	2.00	10.00	1.00	23.00	0.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	35.00	4.00	19.00	0.00	11.00	1.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	34.00	1.00	1.00	7.00	19.00	6.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTAT......................................	21	1	34.00	0.00	14.00	0.00	19.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	34.00	6.00	8.00	0.00	16.00	4.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	34.00	0.00	8.00	3.00	22.00	1.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGAG.................................................................................	22	1	33.00	0.00	6.00	2.00	25.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGGG.................................................................................	22	1	32.00	1.00	2.00	0.00	29.00	0.00
.................................................................................................CTAAGCACTAGGGCCGCAGGAG.................................................................................	22	1	32.00	1.00	5.00	0.00	26.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	30.00	0.00	7.00	4.00	17.00	2.00
.................................................................................................CTAAGTACTAGGGCCGCAGGA..................................................................................	21	1	27.00	0.00	4.00	0.00	22.00	1.00
.................................................................................................CTAAATACTAGTGCCGCAGGAG.................................................................................	22	1	27.00	3.00	14.00	1.00	9.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	27.00	4.00	4.00	0.00	19.00	0.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	27.00	1.00	3.00	4.00	19.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGG................................................................................	23	1	27.00	3.00	3.00	0.00	2.00	19.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	27.00	1.00	8.00	0.00	18.00	0.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	26.00	1.00	7.00	0.00	18.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGA..................................................................................	21	1	26.00	0.00	7.00	0.00	19.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	24.00	3.00	3.00	8.00	8.00	2.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	23.00	2.00	3.00	1.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	23.00	2.00	5.00	0.00	16.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGCG.................................................................................	22	1	23.00	1.00	4.00	0.00	18.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGT...................................................................................	20	1	22.00	0.00	8.00	0.00	11.00	3.00
.................................................................................................CTAAGGACTAGCGCCGCAGGAG.................................................................................	22	1	22.00	0.00	4.00	0.00	18.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGT..................................................................................	21	1	22.00	0.00	5.00	0.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAGT................................................................................	23	1	22.00	3.00	3.00	0.00	16.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGCG.................................................................................	21	1	22.00	1.00	8.00	0.00	13.00	0.00
.................................................................................................CTACGGACTAGTGCCGCAGGAG.................................................................................	22	1	22.00	0.00	5.00	0.00	17.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTA.......................................	20	1	22.00	0.00	14.00	0.00	7.00	1.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	22.00	6.00	7.00	3.00	6.00	0.00
.................................................................................................CTAAGGACTAGGGCCGCAGGAG.................................................................................	22	1	21.00	0.00	2.00	0.00	19.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGCG.................................................................................	22	1	21.00	0.00	3.00	0.00	18.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGCG.................................................................................	22	1	21.00	2.00	4.00	0.00	15.00	0.00
.................................................................................................CTAACTACTAGTGCCGCAGGAG.................................................................................	22	1	20.00	1.00	5.00	1.00	13.00	0.00
.................................................................................................CTAAGGACTAGTGACGCAGGAG.................................................................................	22	1	19.00	0.00	3.00	0.00	16.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGGG.................................................................................	22	1	19.00	1.00	4.00	0.00	14.00	0.00
.................................................................................................CTAAGTACTAGTGACGCAGGA..................................................................................	21	1	19.00	1.00	7.00	0.00	11.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	18.00	0.00	6.00	1.00	11.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGACT................................................................................	23	1	18.00	0.00	0.00	0.00	1.00	17.00
.................................................................................................CTACGTACTAGTGCCGCAGGA..................................................................................	21	1	17.00	0.00	4.00	0.00	13.00	0.00

droEre2

GTG-------CTAGATGTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGCCCAGCAA-------A--AGAA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	230429.00	2277.00	36391.00	0.00	191761.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	29882.00	226.00	2526.00	0.00	27130.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	17650.00	185.00	828.00	0.00	16637.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	4269.00	33.00	622.00	0.00	3614.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	2902.00	20.00	114.00	0.00	2768.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	2435.00	9.00	339.00	0.00	2087.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	2411.00	33.00	117.00	0.00	2261.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	2174.00	19.00	191.00	0.00	1964.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	1899.00	2.00	25.00	0.00	1872.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	1859.00	15.00	40.00	0.00	1804.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	1515.00	3.00	36.00	0.00	1476.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	1220.00	10.00	42.00	0.00	1168.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	1156.00	33.00	803.00	0.00	320.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	1054.00	17.00	36.00	0.00	1001.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	994.00	12.00	80.00	0.00	902.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	914.00	11.00	62.00	0.00	841.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	908.00	2.00	38.00	0.00	868.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	890.00	4.00	56.00	0.00	830.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	792.00	1.00	85.00	0.00	706.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	712.00	0.00	6.00	0.00	706.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	611.00	7.00	31.00	0.00	573.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	545.00	14.00	102.00	0.00	429.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	509.00	1.00	12.00	0.00	496.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	459.00	20.00	267.00	0.00	172.00
.................................................................................................CTAATTACTAGTGCCGCAGGAG.................................................................................	22	1	428.00	8.00	4.00	0.00	416.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	400.00	5.00	85.00	0.00	310.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	398.00	10.00	13.00	0.00	375.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	392.00	18.00	160.00	0.00	214.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	377.00	1.00	72.00	0.00	304.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	356.00	4.00	19.00	0.00	333.00
.................................................................................................CTAAGTACTAGTGCCGCATGA..................................................................................	21	1	345.00	3.00	2.00	0.00	340.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	328.00	2.00	38.00	0.00	288.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	327.00	1.00	58.00	0.00	268.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	317.00	20.00	109.00	0.00	188.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	314.00	5.00	31.00	0.00	278.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	308.00	11.00	72.00	0.00	225.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	293.00	0.00	31.00	0.00	262.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	291.00	2.00	26.00	0.00	263.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	288.00	10.00	72.00	0.00	206.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	287.00	12.00	183.00	0.00	92.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	278.00	8.00	34.00	0.00	236.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	266.00	0.00	19.00	0.00	247.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	263.00	8.00	134.00	0.00	121.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	261.00	2.00	94.00	0.00	165.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	261.00	5.00	34.00	0.00	222.00
.................................................................................................CTAAGTACTxxTGCCGCAGGAG.................................................................................	20	1	238.00	0.00	0.00	0.00	238.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	233.00	1.00	23.00	0.00	209.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	233.00	2.00	14.00	0.00	217.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	225.00	3.00	14.00	0.00	208.00
.................................................................................................CTAAGTACTAGTGCAGCAGGA..................................................................................	21	1	218.00	0.00	4.00	0.00	214.00
.................................................................................................CTAAGTACTAGTGCCGCATGAGT................................................................................	23	1	213.00	3.00	3.00	0.00	207.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	211.00	3.00	36.00	0.00	172.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	211.00	1.00	46.00	0.00	164.00
.................................................................................................ATAAGTACTAGTGCCGCAGGA..................................................................................	21	1	211.00	0.00	2.00	0.00	209.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATTA....................................	22	1	210.00	7.00	14.00	0.00	189.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	207.00	1.00	21.00	0.00	185.00
.................................................................................................CTAAGTACTAGTGCCGCAGTA..................................................................................	21	1	204.00	0.00	7.00	0.00	197.00
.................................................................................................CTAAGTACTAGTTCCGCAGGA..................................................................................	21	1	199.00	2.00	2.00	0.00	195.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	199.00	0.00	2.00	0.00	197.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	192.00	3.00	18.00	0.00	171.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	188.00	7.00	160.00	0.00	21.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	183.00	3.00	23.00	0.00	157.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAGT................................................................................	23	1	174.00	1.00	4.00	0.00	169.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	172.00	2.00	38.00	0.00	132.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	162.00	1.00	16.00	0.00	145.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	161.00	1.00	35.00	0.00	125.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	159.00	2.00	20.00	0.00	137.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	155.00	1.00	39.00	0.00	115.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	152.00	0.00	1.00	0.00	151.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTAT..............................................................................	25	1	145.00	0.00	2.00	0.00	143.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGG................................................................................	23	1	141.00	1.00	1.00	0.00	139.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	141.00	6.00	49.00	0.00	86.00
.................................................................................................CTAAGTACTAGTGCCxCAGGAG.................................................................................	21	1	137.00	0.00	7.00	0.00	130.00
.................................................................................................CTAAGTACTAGTGCCTCAGGA..................................................................................	21	1	135.00	1.00	1.00	0.00	133.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTAT......................................	21	1	127.00	0.00	12.00	0.00	115.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	124.00	1.00	14.00	0.00	109.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	117.00	2.00	18.00	0.00	97.00
.................................................................................................CTAAGTACTATTGCCGCAGGA..................................................................................	21	1	115.00	1.00	2.00	0.00	112.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	113.00	2.00	12.00	0.00	99.00
.................................................................................................CTAAGTACTAGTGACGCAGGA..................................................................................	21	1	113.00	0.00	5.00	0.00	108.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTTT..............................................................................	24	1	110.00	1.00	0.00	0.00	109.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAGT................................................................................	23	1	109.00	1.00	0.00	0.00	108.00
.................................................................................................CTAAGTACTAGTGCCGAAGGA..................................................................................	21	1	109.00	0.00	2.00	0.00	107.00
.................................................................................................CTAAGTACTAGTxCCGCAGGAG.................................................................................	21	1	108.00	0.00	1.00	0.00	107.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	104.00	0.00	34.00	0.00	70.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAGT................................................................................	23	1	104.00	1.00	0.00	0.00	103.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	102.00	3.00	18.00	0.00	81.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	101.00	5.00	27.00	0.00	69.00
.................................................................................................CTAACTACTAGTGCCGCAGGAG.................................................................................	22	1	96.00	1.00	7.00	0.00	88.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGAG.................................................................................	22	1	93.00	0.00	16.00	0.00	77.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	88.00	1.00	29.00	0.00	58.00
.................................................................................................CTTAGTACTAGTGCCGCAGGAG.................................................................................	22	1	87.00	0.00	5.00	0.00	82.00
.................................................................................................CTAAGTACTAGTGACGCAGGAGT................................................................................	23	1	85.00	0.00	0.00	0.00	85.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	85.00	1.00	8.00	0.00	76.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAGT................................................................................	23	1	83.00	0.00	3.00	0.00	80.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAGT................................................................................	23	1	81.00	3.00	0.00	0.00	78.00
.................................................................................................CTAAGGACTAGTGCCGCAGGTG.................................................................................	22	1	81.00	5.00	76.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGAG..................................................................................	21	1	76.00	0.00	2.00	0.00	74.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTAA..............................................................................	25	1	71.00	0.00	0.00	0.00	71.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	70.00	1.00	34.00	0.00	35.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	69.00	1.00	21.00	0.00	47.00

droEug1

ATA-------TCGTGTCTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTGCAACAA-------A--GAAA

Size

Hit Count

Total Norm

droBia1

TCC-------CAGTGCCCACTT----------------------------------------------------------AC-C-GAGCTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGAAGTTGTCCACCGC-------A--AGTG

Size

Hit Count

Total Norm

droTak1

GAG-------TGC---CTACTT----------------------------------------------------------AC-C-GAGCTCACTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCATCAG-------T--ATGA

Size

Hit Count

Total Norm

droEle1

GTG-------TATCAGTTACTT----------------------------------------------------------AC-C-AAGTGCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAACAT-------T---GAA

Size

Hit Count

Total Norm

droRho1

TGG-------CAGCTATTACTT----------------------------------------------------------AC-C-AAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAACAG-------T--GAAA

Size

Hit Count

Total Norm

droFic1

GAG-------TG---ATTACTT----------------------------------------------------------AC-C-GAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCCTATCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGA-GTTGTCCATCAA-------TGAAGAA

Size

Hit Count

Total Norm

droKik1

GCT-------T-------TCTTCCGAAAGGAAAATCCCAAGCCGAT----------------------------------GC-C-GAGTTCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GATGCCCAACCT-------G--CTAG

Size

Hit Count

Total Norm

droAna3

GAG-------T-------ACTTAG-----------CCCCAACCATTGGTAAATATTGATTTTATACTTACATTA--CTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAGCAAAATACA-A--GGAA	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	67676.00	5039.00	41630.00	20739.00	268.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	12353.00	560.00	9501.00	2252.00	40.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	11930.00	194.00	11134.00	564.00	38.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	2381.00	43.00	2289.00	42.00	7.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	1904.00	82.00	1319.00	495.00	8.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	1880.00	20.00	1773.00	81.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	1464.00	23.00	1424.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	1179.00	107.00	614.00	456.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	730.00	38.00	629.00	63.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	597.00	60.00	162.00	374.00	1.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	512.00	39.00	451.00	21.00	1.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	439.00	23.00	380.00	36.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	429.00	3.00	413.00	9.00	4.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	413.00	0.00	22.00	387.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	408.00	16.00	301.00	88.00	3.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	372.00	1.00	362.00	8.00	1.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	357.00	10.00	266.00	81.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	322.00	34.00	97.00	191.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	304.00	28.00	75.00	200.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	301.00	4.00	260.00	37.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	300.00	20.00	249.00	31.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	296.00	7.00	153.00	136.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	295.00	14.00	221.00	55.00	5.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	279.00	3.00	48.00	224.00	4.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	261.00	22.00	175.00	64.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTTT..............................................................................	24	1	259.00	6.00	247.00	3.00	3.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	256.00	23.00	189.00	42.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	217.00	14.00	65.00	137.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	168.00	5.00	21.00	141.00	1.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	167.00	11.00	11.00	142.00	3.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	166.00	1.00	133.00	30.00	2.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	166.00	5.00	108.00	53.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	165.00	7.00	93.00	65.00	0.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	164.00	1.00	142.00	21.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	152.00	2.00	19.00	131.00	0.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAGT................................................................................	23	1	144.00	1.00	140.00	2.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	144.00	3.00	26.00	111.00	4.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	139.00	8.00	102.00	29.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	137.00	1.00	98.00	37.00	1.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATTA....................................	22	1	137.00	1.00	126.00	8.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTTT.............................................................................	26	1	125.00	4.00	120.00	1.00	0.00
.................................................................................................CTAAGTACTAGTTCCGCAGGA..................................................................................	21	1	123.00	4.00	116.00	3.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAGTTT..............................................................................	23	1	114.00	2.00	110.00	2.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTAT......................................	21	1	112.00	0.00	94.00	18.00	0.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	111.00	18.00	52.00	41.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	110.00	4.00	11.00	95.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAGT................................................................................	21	1	108.00	1.00	101.00	6.00	0.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	102.00	26.00	25.00	50.00	1.00
.................................................................................................CTAAGTACTAGTGCCGAAGGA..................................................................................	21	1	91.00	1.00	83.00	7.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATTA....................................	23	1	89.00	0.00	81.00	8.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAGTT...............................................................................	22	1	89.00	2.00	82.00	4.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	88.00	4.00	20.00	63.00	1.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAGT................................................................................	23	1	84.00	0.00	83.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAGT................................................................................	23	1	82.00	0.00	81.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	81.00	2.00	6.00	71.00	2.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	79.00	13.00	53.00	11.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	75.00	2.00	41.00	32.00	0.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	73.00	5.00	43.00	25.00	0.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	73.00	25.00	30.00	18.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	73.00	9.00	25.00	36.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	70.00	3.00	39.00	28.00	0.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	69.00	5.00	50.00	14.00	0.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	68.00	8.00	34.00	26.00	0.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	68.00	7.00	43.00	18.00	0.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	67.00	6.00	43.00	18.00	0.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	67.00	10.00	19.00	38.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGTG.................................................................................	22	1	66.00	0.00	0.00	66.00	0.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	66.00	19.00	36.00	11.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	65.00	4.00	49.00	11.00	1.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAGT................................................................................	23	1	64.00	2.00	61.00	1.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	63.00	1.00	26.00	35.00	1.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAT.................................................................................	22	1	63.00	5.00	57.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCTCAGGA..................................................................................	21	1	60.00	4.00	53.00	2.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCATGAGT................................................................................	23	1	60.00	0.00	58.00	2.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGA..................................................................................	21	1	58.00	0.00	7.00	50.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCATGA..................................................................................	21	1	57.00	1.00	52.00	3.00	1.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	56.00	1.00	37.00	18.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	55.00	4.00	15.00	36.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGA..................................................................................	21	1	53.00	1.00	30.00	22.00	0.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	52.00	6.00	11.00	34.00	1.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	51.00	2.00	35.00	14.00	0.00
.................................................................................................CTAAGTACTxxTGCCGCAGGAG.................................................................................	20	1	48.00	8.00	40.00	0.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	48.00	0.00	44.00	4.00	0.00
.................................................................................................CGAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	48.00	10.00	4.00	34.00	0.00
.................................................................................................CTAAGTACTAGTGACGCAGGAGT................................................................................	23	1	46.00	1.00	44.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGACGCAGGA..................................................................................	21	1	46.00	1.00	39.00	6.00	0.00
.................................................................................................CTAAGTACTAGTxCCGCAGGAG.................................................................................	21	1	45.00	8.00	37.00	0.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAG.................................................................................	20	1	45.00	3.00	28.00	14.00	0.00
.................................................................................................CTAAGTACTAGTGCCxCAGGAG.................................................................................	21	1	45.00	3.00	42.00	0.00	0.00
.................................................................................................GTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	43.00	2.00	8.00	33.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTA..............................................................................	25	1	43.00	0.00	43.00	0.00	0.00
.................................................................................................CTAATTACTAGTGCCGCAGGAG.................................................................................	22	1	43.00	3.00	36.00	4.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGG..................................................................................	21	1	43.00	3.00	24.00	16.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCGT................................................................................	23	1	42.00	1.00	34.00	7.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGTA..................................................................................	21	1	40.00	0.00	31.00	9.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGATT................................................................................	23	1	40.00	0.00	36.00	4.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGG................................................................................	23	1	39.00	0.00	34.00	4.00	1.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAGT................................................................................	23	1	37.00	0.00	36.00	1.00	0.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	37.00	3.00	1.00	31.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTG..............................................................................	25	1	36.00	2.00	34.00	0.00	0.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	35.00	0.00	17.00	18.00	0.00

droBip1

GAG-------T-------ACTTAC-----------CCCAAACCAATGGTAAATATTGATTTTGTACTTAC-TTA--CTTCCTGCGAAG-TCGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCGA-GTTGTCCAGCGAAAT--------ACA

Size

Hit Count

Total Norm

dp4

TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	62405.00	5481.00	6780.00	50138.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	8811.00	1084.00	789.00	6935.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	1819.00	271.00	437.00	1111.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	1527.00	143.00	34.00	1349.00	1.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	1318.00	149.00	95.00	1070.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	554.00	5.00	102.00	447.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	426.00	0.00	76.00	350.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	314.00	9.00	27.00	278.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	291.00	44.00	74.00	173.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	254.00	2.00	20.00	232.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	236.00	24.00	1.00	211.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	205.00	3.00	10.00	192.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	205.00	3.00	26.00	176.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	198.00	5.00	46.00	147.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	191.00	0.00	39.00	152.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	180.00	33.00	81.00	66.00	0.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	178.00	1.00	25.00	152.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	166.00	2.00	38.00	126.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	154.00	2.00	10.00	142.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	151.00	10.00	15.00	126.00	0.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	136.00	1.00	8.00	127.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	122.00	2.00	8.00	112.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	117.00	4.00	10.00	103.00	0.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	116.00	3.00	3.00	110.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	112.00	1.00	5.00	95.00	11.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	109.00	2.00	26.00	81.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	105.00	19.00	7.00	79.00	0.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	97.00	3.00	14.00	80.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	92.00	2.00	13.00	77.00	0.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	91.00	4.00	10.00	77.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	85.00	0.00	18.00	67.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	76.00	7.00	12.00	57.00	0.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	76.00	2.00	12.00	62.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	75.00	8.00	27.00	40.00	0.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	75.00	7.00	8.00	60.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	74.00	4.00	3.00	67.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGTG.................................................................................	22	1	73.00	0.00	3.00	70.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGA..................................................................................	21	1	63.00	0.00	11.00	52.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	63.00	0.00	7.00	56.00	0.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	62.00	8.00	2.00	52.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	62.00	7.00	3.00	52.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	61.00	2.00	11.00	48.00	0.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	59.00	4.00	5.00	50.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	58.00	2.00	5.00	51.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	57.00	5.00	7.00	44.00	1.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	56.00	4.00	10.00	42.00	0.00
.................................................................................................CTAAGGACTAGCGCCGCAGGAG.................................................................................	22	1	54.00	0.00	1.00	53.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	54.00	1.00	4.00	49.00	0.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	52.00	1.00	4.00	47.00	0.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	52.00	4.00	9.00	39.00	0.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	50.00	7.00	2.00	40.00	1.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	49.00	3.00	9.00	37.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	48.00	2.00	7.00	39.00	0.00
.................................................................................................CGAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	48.00	0.00	7.00	41.00	0.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	48.00	8.00	3.00	37.00	0.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	44.00	8.00	2.00	34.00	0.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	42.00	3.00	2.00	37.00	0.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	42.00	2.00	3.00	37.00	0.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	41.00	1.00	11.00	29.00	0.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	39.00	6.00	5.00	28.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	38.00	5.00	6.00	27.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGA..................................................................................	21	1	38.00	0.00	4.00	34.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	37.00	2.00	0.00	35.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGA..................................................................................	21	1	37.00	1.00	4.00	32.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	36.00	4.00	6.00	26.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	35.00	2.00	19.00	14.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	33.00	0.00	7.00	26.00	0.00
.................................................................................................CTTAGTACTAGTGCCGCAGGAG.................................................................................	22	1	32.00	0.00	8.00	24.00	0.00
.................................................................................................GTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	31.00	1.00	4.00	26.00	0.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	31.00	3.00	7.00	21.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGCG.................................................................................	22	1	31.00	0.00	4.00	27.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGT...................................................................................	20	1	29.00	3.00	0.00	26.00	0.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	28.00	1.00	10.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	28.00	12.00	6.00	10.00	0.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	26.00	0.00	4.00	22.00	0.00
.................................................................................................CTAAGCACTAGGGCCGCAGGAG.................................................................................	22	1	25.00	0.00	0.00	25.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGG..................................................................................	21	1	25.00	1.00	8.00	16.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	25.00	3.00	7.00	15.00	0.00
.................................................................................................CTAACTACTAGTGCCGCAGGAG.................................................................................	22	1	25.00	3.00	1.00	21.00	0.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	23.00	8.00	2.00	13.00	0.00
.................................................................................................CTAAGTACTAGGGCCGCAGGA..................................................................................	21	1	23.00	0.00	2.00	21.00	0.00
.................................................................................................CTAAGCACTAGCGCCGCAGGAG.................................................................................	22	1	23.00	0.00	2.00	21.00	0.00
.................................................................................................CTAAATACTAGTGCCGCAGGAG.................................................................................	22	1	22.00	1.00	7.00	14.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	22.00	0.00	1.00	21.00	0.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	21.00	2.00	5.00	14.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGCG.................................................................................	22	1	21.00	0.00	6.00	15.00	0.00
.................................................................................................CTCAGTACTAGTGCCGCAGGA..................................................................................	21	1	20.00	1.00	1.00	18.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGCG.................................................................................	22	1	20.00	0.00	2.00	18.00	0.00
.................................................................................................CTAAGGACTAGGGCCGCAGGAG.................................................................................	22	1	19.00	0.00	3.00	16.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	19.00	1.00	0.00	18.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGCG.................................................................................	22	1	19.00	0.00	2.00	17.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAG.................................................................................	20	1	19.00	4.00	1.00	14.00	0.00
.................................................................................................CTAAGTACAAGTGCCGCAGGAG.................................................................................	22	1	19.00	1.00	0.00	18.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGCAG.................................................................................	22	1	18.00	0.00	0.00	18.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGG...................................................................................	19	1	18.00	2.00	2.00	14.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGGG.................................................................................	22	1	18.00	0.00	0.00	18.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGA..................................................................................	21	1	17.00	0.00	2.00	15.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGCG.................................................................................	22	1	17.00	0.00	0.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCGT................................................................................	23	1	17.00	0.00	6.00	11.00	0.00
.................................................................................................TTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	16.00	0.00	1.00	15.00	0.00
.................................................................................................CGAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	16.00	0.00	0.00	16.00	0.00

droPer1

TA--------TCTTGTGCATTT----------------------------------------------------------TGGC--GGTTTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTCGTGTCCGCAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGGCG--GTGGTCCAACAG-------T--GAAA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	60936.00	3642.00	801.00	35791.00	20673.00	29.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	9178.00	758.00	80.00	4787.00	3545.00	8.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	1592.00	261.00	54.00	785.00	488.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	1439.00	101.00	6.00	656.00	676.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	1235.00	94.00	17.00	724.00	397.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	656.00	4.00	17.00	333.00	302.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	619.00	5.00	6.00	182.00	426.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	424.00	5.00	4.00	231.00	184.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	321.00	7.00	4.00	151.00	159.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	294.00	58.00	18.00	140.00	78.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	270.00	0.00	1.00	91.00	178.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	266.00	2.00	2.00	146.00	116.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	261.00	0.00	4.00	53.00	204.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	247.00	3.00	1.00	153.00	90.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	237.00	5.00	0.00	93.00	77.00	62.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	219.00	2.00	5.00	95.00	117.00	0.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	214.00	3.00	2.00	51.00	158.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	181.00	15.00	1.00	94.00	71.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	173.00	12.00	3.00	96.00	62.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	161.00	2.00	1.00	75.00	83.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	159.00	0.00	6.00	94.00	59.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	154.00	6.00	2.00	87.00	59.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	146.00	3.00	1.00	37.00	105.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGTG.................................................................................	22	1	144.00	0.00	2.00	33.00	109.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	127.00	46.00	6.00	44.00	31.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGA..................................................................................	21	1	114.00	0.00	0.00	27.00	87.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	113.00	4.00	0.00	64.00	45.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	104.00	1.00	1.00	83.00	19.00	0.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	104.00	0.00	0.00	50.00	54.00	0.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	102.00	2.00	0.00	47.00	53.00	0.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	94.00	1.00	0.00	46.00	47.00	0.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	89.00	6.00	0.00	45.00	38.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	89.00	4.00	0.00	35.00	50.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	88.00	1.00	1.00	43.00	43.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	88.00	4.00	0.00	43.00	41.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGA..................................................................................	21	1	87.00	1.00	0.00	39.00	47.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	81.00	3.00	2.00	59.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	75.00	4.00	1.00	33.00	33.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	71.00	6.00	1.00	27.00	37.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	71.00	0.00	1.00	23.00	47.00	0.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	70.00	8.00	0.00	32.00	30.00	0.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	63.00	3.00	1.00	20.00	39.00	0.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	62.00	1.00	1.00	35.00	25.00	0.00
.................................................................................................CGAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	61.00	0.00	0.00	14.00	47.00	0.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	60.00	2.00	0.00	26.00	32.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	59.00	7.00	8.00	28.00	16.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	58.00	1.00	0.00	17.00	40.00	0.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	56.00	3.00	1.00	25.00	27.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	55.00	0.00	1.00	6.00	48.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	55.00	0.00	1.00	18.00	36.00	0.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	55.00	8.00	0.00	27.00	20.00	0.00
.................................................................................................CTAAGGACTAGCGCCGCAGGAG.................................................................................	22	1	54.00	0.00	0.00	20.00	34.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	54.00	0.00	0.00	24.00	30.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	52.00	0.00	0.00	15.00	37.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGA..................................................................................	21	1	52.00	0.00	2.00	23.00	27.00	0.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	52.00	3.00	2.00	23.00	24.00	0.00
.................................................................................................CTAAGGACTAGGGCCGCAGGAG.................................................................................	22	1	50.00	0.00	0.00	13.00	37.00	0.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	47.00	0.00	1.00	20.00	26.00	0.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	47.00	5.00	0.00	22.00	20.00	0.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	45.00	0.00	0.00	6.00	39.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	43.00	3.00	0.00	23.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGT...................................................................................	20	1	40.00	4.00	0.00	13.00	23.00	0.00
.................................................................................................GTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	39.00	0.00	0.00	10.00	29.00	0.00
.................................................................................................CTAAGCACTAGCGCCGCAGGAG.................................................................................	22	1	39.00	0.00	0.00	18.00	21.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	39.00	1.00	3.00	17.00	18.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTAT......................................	21	1	37.00	1.00	1.00	15.00	20.00	0.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	37.00	5.00	0.00	16.00	16.00	0.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	36.00	0.00	1.00	17.00	18.00	0.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	35.00	2.00	1.00	20.00	12.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	35.00	1.00	0.00	7.00	27.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGG..................................................................................	21	1	34.00	0.00	0.00	17.00	17.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	34.00	0.00	0.00	11.00	23.00	0.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	34.00	3.00	1.00	14.00	16.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGA..................................................................................	21	1	34.00	0.00	0.00	20.00	14.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGCAG.................................................................................	22	1	33.00	0.00	0.00	10.00	23.00	0.00
.................................................................................................CTAAGTACTAGGGCCGCAGGA..................................................................................	21	1	33.00	1.00	0.00	9.00	23.00	0.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	33.00	5.00	0.00	15.00	13.00	0.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	32.00	3.00	2.00	9.00	18.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTT.....................................................................................	18	1	32.00	0.00	0.00	3.00	29.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGGG.................................................................................	22	1	31.00	0.00	0.00	7.00	24.00	0.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	30.00	1.00	0.00	17.00	12.00	0.00
.................................................................................................ATAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	29.00	0.00	1.00	4.00	24.00	0.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	28.00	3.00	1.00	14.00	10.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGCG.................................................................................	22	1	28.00	0.00	0.00	8.00	20.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGT..................................................................................	21	1	27.00	0.00	0.00	3.00	24.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGCG.................................................................................	22	1	27.00	0.00	0.00	17.00	10.00	0.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	27.00	2.00	0.00	17.00	8.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	26.00	2.00	0.00	12.00	12.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGCTG.................................................................................	22	1	26.00	0.00	1.00	6.00	19.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGCG.................................................................................	22	1	26.00	0.00	0.00	5.00	21.00	0.00
.................................................................................................CTAAGCACTAGGGCCGCAGGAG.................................................................................	22	1	26.00	0.00	0.00	11.00	15.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGGG.................................................................................	22	1	26.00	0.00	0.00	6.00	20.00	0.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	25.00	0.00	1.00	13.00	11.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGCG.................................................................................	22	1	25.00	0.00	1.00	7.00	17.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATTA....................................	22	1	25.00	0.00	1.00	8.00	16.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGCG.................................................................................	22	1	24.00	0.00	0.00	13.00	11.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	24.00	4.00	6.00	9.00	5.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGGG.................................................................................	22	1	23.00	0.00	0.00	6.00	17.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTT........................................	19	1	23.00	0.00	0.00	1.00	22.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGA..................................................................................	21	1	22.00	0.00	0.00	7.00	15.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAG.................................................................................	20	1	22.00	0.00	1.00	12.00	9.00	0.00

droWil1

GAT-------GGATCAATACTT----------------------------------------------AC-TTGAAC--GAAGC--GTATTGCTTTACTAAGTACTAGTGCCGCAGGAGTTTGGTTCGTGTCCGTAATACCTCCTGCTGCCCAAGTGCTTATTAAAGCGACGA-CTTTACCTACTT-------A--AAAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	137170.00	2314.00	43557.00	89779.00	1520.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	22571.00	546.00	3433.00	18004.00	588.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	16843.00	62.00	1855.00	14739.00	187.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	3181.00	17.00	444.00	2620.00	100.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	2907.00	40.00	622.00	2041.00	204.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	2737.00	3.00	454.00	2264.00	16.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	2359.00	5.00	31.00	111.00	2212.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	2052.00	5.00	354.00	1674.00	19.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	1635.00	4.00	59.00	1543.00	29.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	1292.00	36.00	89.00	1090.00	77.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	863.00	9.00	44.00	801.00	9.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	651.00	5.00	20.00	626.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAGTT...............................................................................	22	1	591.00	2.00	91.00	486.00	12.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTTT..............................................................................	24	1	552.00	1.00	33.00	517.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	543.00	0.00	68.00	114.00	361.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	433.00	5.00	121.00	305.00	2.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	417.00	0.00	75.00	342.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	397.00	6.00	115.00	276.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	374.00	0.00	71.00	303.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	369.00	1.00	21.00	347.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	359.00	12.00	23.00	316.00	8.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	329.00	0.00	135.00	193.00	1.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	319.00	1.00	111.00	194.00	13.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	315.00	0.00	98.00	217.00	0.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	314.00	1.00	55.00	257.00	1.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	310.00	2.00	66.00	241.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	307.00	1.00	27.00	279.00	0.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	300.00	3.00	120.00	167.00	10.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	271.00	0.00	20.00	251.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	253.00	0.00	16.00	237.00	0.00
...................................................................................................AAGTACTAGTGCCGCAGGAGTTT..............................................................................	23	1	249.00	1.00	4.00	243.00	1.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	247.00	2.00	100.00	142.00	3.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	236.00	3.00	26.00	206.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	235.00	4.00	42.00	182.00	7.00
...................................................................................................AAGTACTAGTGCCGCAGGAGT................................................................................	21	1	203.00	0.00	7.00	186.00	10.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	197.00	6.00	56.00	131.00	4.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	181.00	7.00	59.00	115.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATT.....................................	22	1	179.00	1.00	31.00	135.00	12.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	177.00	0.00	82.00	94.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGACT................................................................................	23	1	175.00	0.00	0.00	11.00	164.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	174.00	1.00	35.00	137.00	1.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	166.00	3.00	43.00	117.00	3.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	162.00	1.00	20.00	141.00	0.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	158.00	0.00	28.00	127.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	158.00	1.00	18.00	132.00	7.00
.................................................................................................CTAAGTACTxxTGCCGCAGGAG.................................................................................	20	1	157.00	5.00	48.00	102.00	2.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	153.00	4.00	31.00	107.00	11.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	150.00	1.00	27.00	122.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATTA....................................	22	1	145.00	1.00	56.00	87.00	1.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	139.00	6.00	44.00	82.00	7.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	137.00	0.00	55.00	82.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	134.00	1.00	28.00	103.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	131.00	1.00	44.00	86.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	130.00	2.00	41.00	87.00	0.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	127.00	0.00	13.00	114.00	0.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	124.00	2.00	37.00	82.00	3.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	122.00	0.00	35.00	85.00	2.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	120.00	0.00	26.00	92.00	2.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	115.00	0.00	32.00	82.00	1.00
.......................................................................................................................TTTGGTTCGTGTCCGTAATACC...........................................................	22	1	109.00	4.00	8.00	10.00	87.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAAA................................................................................	23	1	106.00	1.00	1.00	104.00	0.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	105.00	0.00	35.00	70.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	105.00	1.00	15.00	89.00	0.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	104.00	5.00	38.00	60.00	1.00
.................................................................................................CTAAATACTAGTGCCGCAGGAG.................................................................................	22	1	104.00	1.00	8.00	95.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	99.00	1.00	6.00	55.00	37.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	98.00	1.00	15.00	82.00	0.00
.................................................................................................CTAAGTACTAGTGCCGAAGGA..................................................................................	21	1	95.00	0.00	10.00	85.00	0.00
.................................................................................................CTAAGTACTAGTGCCxCAGGAG.................................................................................	21	1	95.00	0.00	15.00	74.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAGGG..................................................................................	21	1	94.00	3.00	2.00	36.00	53.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	92.00	3.00	22.00	65.00	2.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	92.00	2.00	19.00	67.00	4.00
...................................................................................................AAGTACTAGTGCCGCAGGAG.................................................................................	20	1	91.00	5.00	12.00	68.00	6.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	86.00	2.00	14.00	70.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	78.00	1.00	0.00	69.00	8.00
.................................................................................................CTAAGTACTAGTxCCGCAGGAG.................................................................................	21	1	76.00	7.00	19.00	41.00	9.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	76.00	0.00	27.00	49.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGA..................................................................................	21	1	75.00	0.00	1.00	74.00	0.00
.......................................................................................................................TTTGGTTCGTGTCCGTAATACCT..........................................................	23	1	74.00	0.00	20.00	2.00	52.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	73.00	0.00	8.00	65.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTAT......................................	21	1	71.00	0.00	1.00	69.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGAG..................................................................................	21	1	67.00	0.00	10.00	57.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAGT................................................................................	23	1	67.00	0.00	2.00	65.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGA..................................................................................	21	1	66.00	0.00	8.00	58.00	0.00
.................................................................................................CTAACTACTAGTGCCGCAGGAG.................................................................................	22	1	64.00	1.00	16.00	47.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	61.00	3.00	7.00	45.00	6.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAGT................................................................................	23	1	61.00	1.00	6.00	54.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTTT.............................................................................	26	1	59.00	0.00	0.00	59.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAGT................................................................................	23	1	58.00	0.00	6.00	52.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTA..............................................................................	25	1	57.00	0.00	3.00	54.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGG................................................................................	23	1	56.00	0.00	0.00	43.00	13.00
.................................................................................................ATAAGTACTAGTGCCGCAGGA..................................................................................	21	1	55.00	0.00	11.00	44.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGAA...............................................................................	24	1	55.00	0.00	2.00	52.00	1.00
.................................................................................................CTAAGTACTAGAGCCGCAGGA..................................................................................	21	1	55.00	1.00	2.00	51.00	1.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAGT................................................................................	23	1	54.00	0.00	3.00	51.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	54.00	0.00	2.00	51.00	1.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	53.00	0.00	11.00	42.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAAT................................................................................	23	1	52.00	0.00	0.00	50.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAAGA..................................................................................	21	1	52.00	0.00	2.00	49.00	1.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTTA..............................................................................	24	1	52.00	0.00	1.00	50.00	1.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAGT................................................................................	23	1	52.00	0.00	3.00	49.00	0.00

droVir3

T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAAGCGACTA-GTTTTCCACCAGCA-ACAATTAGAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	47716.00	9749.00	35446.00	1586.00	166.00	769.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	5462.00	1089.00	4077.00	54.00	37.00	205.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	1415.00	238.00	1038.00	37.00	13.00	89.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	804.00	113.00	638.00	2.00	17.00	34.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	703.00	111.00	551.00	17.00	5.00	19.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	540.00	29.00	476.00	32.00	1.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	538.00	70.00	75.00	6.00	49.00	338.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	490.00	4.00	72.00	4.00	54.00	356.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	465.00	9.00	455.00	1.00	0.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	387.00	2.00	372.00	11.00	0.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	233.00	6.00	214.00	12.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	232.00	4.00	228.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	230.00	22.00	204.00	4.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	203.00	36.00	159.00	4.00	0.00	4.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	184.00	23.00	151.00	9.00	0.00	1.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	175.00	0.00	174.00	1.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGCAG.................................................................................	22	1	153.00	0.00	152.00	1.00	0.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGGTG.................................................................................	22	1	141.00	0.00	141.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	132.00	10.00	112.00	5.00	1.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	127.00	11.00	102.00	1.00	3.00	10.00
.................................................................................................CGAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	118.00	1.00	115.00	2.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	116.00	20.00	61.00	9.00	6.00	20.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	109.00	6.00	98.00	5.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	105.00	5.00	87.00	13.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	104.00	3.00	99.00	2.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	100.00	4.00	81.00	15.00	0.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	97.00	6.00	90.00	1.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGCG.................................................................................	22	1	94.00	0.00	93.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	86.00	21.00	52.00	6.00	1.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	85.00	3.00	58.00	1.00	3.00	20.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	76.00	8.00	61.00	4.00	0.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	69.00	3.00	58.00	8.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGA..................................................................................	21	1	69.00	0.00	69.00	0.00	0.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	69.00	4.00	62.00	3.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	68.00	7.00	54.00	7.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	66.00	13.00	53.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	65.00	12.00	53.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	62.00	22.00	24.00	11.00	3.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	58.00	6.00	51.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	57.00	13.00	40.00	4.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	57.00	14.00	31.00	6.00	1.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCAGGG..................................................................................	21	1	56.00	2.00	14.00	0.00	12.00	28.00
.................................................................................................CTAAGGACTAGTGCCGCAGGA..................................................................................	21	1	51.00	3.00	47.00	1.00	0.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	49.00	6.00	35.00	0.00	3.00	5.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	48.00	11.00	36.00	0.00	1.00	0.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	48.00	6.00	40.00	2.00	0.00	0.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	46.00	8.00	35.00	3.00	0.00	0.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	46.00	7.00	34.00	2.00	0.00	3.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	45.00	1.00	40.00	4.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	45.00	7.00	35.00	2.00	1.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	43.00	2.00	24.00	5.00	4.00	8.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	43.00	14.00	29.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	43.00	15.00	19.00	7.00	0.00	2.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	43.00	15.00	22.00	3.00	0.00	3.00
.................................................................................................CGAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	42.00	0.00	42.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	42.00	16.00	23.00	3.00	0.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	39.00	1.00	38.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGCCG.................................................................................	22	1	39.00	0.00	39.00	0.00	0.00	0.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	38.00	5.00	32.00	1.00	0.00	0.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	38.00	3.00	34.00	1.00	0.00	0.00
.................................................................................................CTAAGGACTAGGGCCGCAGGAG.................................................................................	22	1	36.00	0.00	36.00	0.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGTG.................................................................................	22	1	35.00	0.00	34.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	34.00	0.00	33.00	0.00	1.00	0.00
.................................................................................................CTAAGGACTAGCGCCGCAGGAG.................................................................................	22	1	34.00	0.00	33.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	33.00	10.00	18.00	5.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	32.00	0.00	32.00	0.00	0.00	0.00
.................................................................................................TTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	31.00	1.00	30.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	31.00	3.00	22.00	6.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	30.00	6.00	24.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGACT................................................................................	23	1	29.00	0.00	2.00	0.00	2.00	25.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	28.00	2.00	23.00	1.00	0.00	2.00
.................................................................................................CTAAGCACTAGGGCCGCAGGAG.................................................................................	22	1	28.00	0.00	28.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	28.00	4.00	22.00	1.00	0.00	1.00
.................................................................................................CTAAGTACTAGGGCCGCAGGA..................................................................................	21	1	27.00	2.00	25.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCACGCG.................................................................................	22	1	27.00	0.00	26.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGATT................................................................................	23	1	25.00	0.00	5.00	0.00	1.00	19.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	25.00	2.00	22.00	1.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGCTG.................................................................................	22	1	24.00	0.00	24.00	0.00	0.00	0.00
.................................................................................................CTAAGTACAAGTGCCGCAGGAG.................................................................................	22	1	24.00	4.00	20.00	0.00	0.00	0.00
.................................................................................................ATAAGTACTAGTGCCGCAGGA..................................................................................	21	1	24.00	0.00	24.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	24.00	6.00	17.00	0.00	0.00	1.00
.................................................................................................CTAAGGACTAGTGCCGCAGGCG.................................................................................	22	1	23.00	0.00	22.00	1.00	0.00	0.00
.................................................................................................CTAAGAACTAGTGCCGCAGGCG.................................................................................	22	1	23.00	0.00	23.00	0.00	0.00	0.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	23.00	1.00	22.00	0.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGGG.................................................................................	22	1	22.00	0.00	22.00	0.00	0.00	0.00
.................................................................................................GTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	21.00	1.00	19.00	1.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAGT................................................................................	23	1	21.00	0.00	21.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCT.................................................................................	22	1	21.00	0.00	18.00	0.00	0.00	3.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	20.00	0.00	19.00	1.00	0.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGCG.................................................................................	21	1	20.00	0.00	20.00	0.00	0.00	0.00
.................................................................................................CGAAGTACTAGTGCCGCAGGA..................................................................................	21	1	20.00	0.00	20.00	0.00	0.00	0.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	19.00	0.00	19.00	0.00	0.00	0.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	19.00	1.00	7.00	0.00	5.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAGT...................................................................................	20	1	19.00	0.00	15.00	0.00	0.00	4.00
.................................................................................................CTAAGTACTAGTGACGCAGGA..................................................................................	21	1	19.00	0.00	19.00	0.00	0.00	0.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGAG.................................................................................	22	1	19.00	2.00	16.00	1.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGACGCAGGAG.................................................................................	22	1	18.00	0.00	18.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	18.00	3.00	15.00	0.00	0.00	0.00
.................................................................................................CTAAGTACTxxTGCCGCAGGAG.................................................................................	20	1	17.00	16.00	0.00	0.00	0.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	17.00	2.00	15.00	0.00	0.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCACGAG.................................................................................	22	1	17.00	0.00	17.00	0.00	0.00	0.00

droMoj3

T-----------------------------------------------------------------------------------------TGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGGTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATCAAAGCGACGA-GTTTTTCAACAGCA-GCA-A--TTAA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	74288.00	9232.00	33607.00	23988.00	7461.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	8332.00	1183.00	3779.00	3103.00	267.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	1565.00	194.00	713.00	468.00	190.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	1065.00	6.00	282.00	644.00	133.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	1031.00	114.00	483.00	347.00	87.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	681.00	80.00	321.00	273.00	7.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	632.00	8.00	330.00	235.00	59.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	603.00	1.00	82.00	456.00	64.00
.................................................................................................CTAAGTACTAGTGCCGCAGGTG.................................................................................	22	1	354.00	0.00	217.00	125.00	12.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	327.00	8.00	195.00	102.00	22.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	293.00	7.00	173.00	93.00	20.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	242.00	6.00	121.00	70.00	45.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATC.....................................	21	1	241.00	9.00	132.00	92.00	8.00
.................................................................................................CTAAGTACTAGTGCCGCAGTAG.................................................................................	22	1	237.00	4.00	122.00	109.00	2.00
.................................................................................................TTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	222.00	3.00	169.00	31.00	19.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	216.00	14.00	69.00	127.00	6.00
.................................................................................................CTAAGGACTAGTGCCGCAGGTG.................................................................................	22	1	200.00	0.00	131.00	69.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	180.00	13.00	78.00	88.00	1.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	168.00	4.00	82.00	65.00	17.00
.................................................................................................CTAAGTACTAGTGACGCAGGAG.................................................................................	22	1	148.00	9.00	75.00	50.00	14.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	145.00	14.00	70.00	51.00	10.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	143.00	3.00	101.00	35.00	4.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	143.00	3.00	34.00	101.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	131.00	2.00	70.00	52.00	7.00
.................................................................................................ATAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	130.00	8.00	81.00	33.00	8.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	124.00	13.00	56.00	47.00	8.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGA................................................................................	23	1	120.00	16.00	30.00	46.00	28.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATCA....................................	22	1	114.00	5.00	49.00	43.00	17.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	114.00	7.00	41.00	57.00	9.00
.................................................................................................CTAAGTACTAGTGCCGCAGGT..................................................................................	21	1	108.00	10.00	51.00	46.00	1.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	99.00	25.00	16.00	53.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	97.00	6.00	57.00	30.00	4.00
.................................................................................................CTAAGTACTAGTGCAGCAGGAG.................................................................................	22	1	96.00	8.00	58.00	24.00	6.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	96.00	3.00	21.00	62.00	10.00
.................................................................................................CTAAGTACTAGTGCCGCCGGA..................................................................................	21	1	93.00	0.00	14.00	73.00	6.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	90.00	4.00	33.00	43.00	10.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTAT......................................	20	1	86.00	5.00	42.00	39.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	85.00	2.00	40.00	35.00	8.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	83.00	13.00	31.00	34.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCCGGCG.................................................................................	22	1	82.00	0.00	6.00	69.00	7.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	81.00	6.00	43.00	27.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	81.00	21.00	25.00	23.00	12.00
.................................................................................................CTAGGTACTAGTGCCGCAGGAG.................................................................................	22	1	81.00	3.00	36.00	34.00	8.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	77.00	3.00	42.00	28.00	4.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	76.00	5.00	45.00	18.00	8.00
.................................................................................................CTAAGTACTAGAGCCGCAGGAG.................................................................................	22	1	75.00	7.00	41.00	20.00	7.00
.................................................................................................CTAAGGACTAGTGCCGCAGGA..................................................................................	21	1	71.00	2.00	38.00	30.00	1.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	70.00	11.00	34.00	23.00	2.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	69.00	0.00	15.00	48.00	6.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	68.00	2.00	52.00	10.00	4.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	66.00	9.00	38.00	15.00	4.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	64.00	10.00	24.00	16.00	14.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTATC.....................................	22	1	62.00	2.00	30.00	23.00	7.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	62.00	14.00	22.00	21.00	5.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	61.00	3.00	25.00	29.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAG....................................................................................	19	1	56.00	7.00	28.00	21.00	0.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	55.00	3.00	22.00	27.00	3.00
.................................................................................................CGAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	52.00	0.00	32.00	17.00	3.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	51.00	18.00	18.00	15.00	0.00
.................................................................................................CTAAGTAATAGTGCCGCAGGAG.................................................................................	22	1	49.00	6.00	24.00	14.00	5.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	49.00	6.00	21.00	21.00	1.00
.................................................................................................CTAAGTACTAGTACCGCAGGAG.................................................................................	22	1	48.00	2.00	29.00	14.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	48.00	3.00	27.00	14.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCA.....................................................................................	18	1	48.00	0.00	28.00	20.00	0.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	48.00	1.00	20.00	20.00	7.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	47.00	6.00	16.00	18.00	7.00
.................................................................................................CTAAGGACTAGTGCCGCAGGCG.................................................................................	22	1	47.00	0.00	28.00	14.00	5.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	45.00	0.00	9.00	31.00	5.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	44.00	17.00	14.00	11.00	2.00
.................................................................................................CTAAGCACTAGTGCCGCAGGA..................................................................................	21	1	42.00	0.00	26.00	16.00	0.00
.................................................................................................CTAAGCACTAGGGCCGCAGGAG.................................................................................	22	1	42.00	0.00	28.00	10.00	4.00
.................................................................................................CTAAGTACTAGTGCCGCAGGC..................................................................................	21	1	41.00	1.00	22.00	16.00	2.00
.................................................................................................CTAAGGACTAGCGCCGCAGGAG.................................................................................	22	1	41.00	0.00	29.00	10.00	2.00
.................................................................................................CTAAGTATTAGTGCCGCAGGAG.................................................................................	22	1	39.00	3.00	19.00	16.00	1.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	39.00	4.00	17.00	15.00	3.00
.................................................................................................CTAAGTACTAGCGCCGCAGGA..................................................................................	21	1	38.00	2.00	21.00	13.00	2.00
.................................................................................................CTAAGGACTAGGGCCGCAGGAG.................................................................................	22	1	35.00	0.00	17.00	17.00	1.00
.................................................................................................CTAAATACTAGTGCCGCAGGAG.................................................................................	22	1	34.00	1.00	9.00	15.00	9.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	34.00	0.00	25.00	7.00	2.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	33.00	3.00	16.00	11.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCACGCG.................................................................................	22	1	33.00	0.00	17.00	16.00	0.00
.................................................................................................GTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	32.00	3.00	25.00	3.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGCTG.................................................................................	22	1	30.00	0.00	19.00	9.00	2.00
.................................................................................................TTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	28.00	1.00	21.00	6.00	0.00
.................................................................................................CTAAGGACTAGTGCCGCAGCAG.................................................................................	22	1	28.00	0.00	14.00	14.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGCG.................................................................................	22	1	28.00	0.00	17.00	11.00	0.00
.............................................................................................................................................TCCTGCTGCCCAAGTGCTTAT......................................	21	1	26.00	0.00	15.00	11.00	0.00
.................................................................................................CTACGGACTAGTGCCGCAGGAG.................................................................................	22	1	25.00	0.00	5.00	19.00	1.00
.................................................................................................CTACGTACTAGTGCCGCAGGA..................................................................................	21	1	25.00	0.00	2.00	23.00	0.00
.................................................................................................CTAAGTACTAGGGCCGCAGGA..................................................................................	21	1	24.00	0.00	13.00	10.00	1.00
.................................................................................................CTAAGGACTAGTGCCGCAGGGG.................................................................................	22	1	24.00	0.00	13.00	6.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTT..............................................................................	25	1	24.00	4.00	10.00	9.00	1.00
.................................................................................................CGAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	23.00	0.00	16.00	7.00	0.00
.................................................................................................CTAAGCACTAGTGCCGCAGGGG.................................................................................	22	1	23.00	0.00	11.00	9.00	3.00
.................................................................................................CTAAGTACTAGTGACGCAGGA..................................................................................	21	1	23.00	1.00	11.00	9.00	2.00
.................................................................................................CTAAGTACTAGCGCCGCAGGCG.................................................................................	22	1	21.00	0.00	11.00	9.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCCGGGG.................................................................................	22	1	21.00	0.00	6.00	12.00	3.00
.................................................................................................CTAAGGACTAGTGCCGCAGGT..................................................................................	21	1	21.00	0.00	13.00	8.00	0.00
..................................................................................................TAAGTACTAGTGCCGCAGGCG.................................................................................	21	1	21.00	0.00	3.00	18.00	0.00
.................................................................................................ATAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	21.00	0.00	8.00	7.00	6.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGAG.................................................................................	22	1	20.00	0.00	6.00	10.00	4.00

droGri2

TTG-------TGGCACTTACTT---------------------------------------------------GAGCTTGATGC--GTATTGCTTTCCTAAGTACTAGTGCCGCAGGAGTTAGGTTTGTGTCCGCAATGCCTCCTGCTGCCCAAGTGCTTATTAAGGCGACGA-ATTTTCCAACAATGT----G--CGAG	Size	Hit Count	Total Norm	V109 Male body
.................................................................................................CTAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	1359.00	1359.00
.................................................................................................CTAAGTACTAGTGCCGCAGGA..................................................................................	21	1	100.00	100.00
..................................................................................................TAAGTACTAGTGCCGCAGGAG.................................................................................	21	1	31.00	31.00
.................................................................................................CTAAGTACTAGTGCCGCCGGAG.................................................................................	22	1	15.00	15.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGT................................................................................	23	1	14.00	14.00
.................................................................................................CTAAGTACTAGTGCCGCAGG...................................................................................	20	1	10.00	10.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGAG.................................................................................	22	1	10.00	10.00
.................................................................................................CTAAGTACTAGTGCCGCGGGAG.................................................................................	22	1	8.00	8.00
.................................................................................................CTAAGTACTAGTGCCGCTGGAG.................................................................................	22	1	7.00	7.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGT................................................................................	22	1	7.00	7.00
.................................................................................................CTAAGTACAAGTGCCGCAGGAG.................................................................................	22	1	5.00	5.00
.................................................................................................CTAAGTACTAGTTCCGCAGGAG.................................................................................	22	1	5.00	5.00
.................................................................................................CTCAGTACTAGTGCCGCAGGAG.................................................................................	22	1	5.00	5.00
.................................................................................................CTAAGTACTAGTGCCGCAAGAG.................................................................................	22	1	4.00	4.00
..................................................................................................TAAGTACTAGTGCCGCAGGA..................................................................................	20	1	4.00	4.00
.................................................................................................CTAAGAACTAGTGCCGCAGGAG.................................................................................	22	1	4.00	4.00
.................................................................................................CTGAGTACTAGTGCCGCAGGAG.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAG.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGTACTAGTGCCTCAGGAG.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAC.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGTGCTAGTGCCGCAGGAG.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCACGAG.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGGACTAGTGCCGCAGGAG.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAT.................................................................................	22	1	3.00	3.00
.................................................................................................CTAAGTACTAGTGCCGAAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGC................................................................................	23	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGCG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCACAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGGG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTACTGCCGCAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACCAGTGCCGCAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTCCCGCAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTTAGTACTAGTGCCGCAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTGGTGCCGCAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGAAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCGGGA..................................................................................	21	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGTAGGAG.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAA.................................................................................	22	1	2.00	2.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTG...............................................................................	24	1	1.00	1.00
.................................................................................................CTAAGTTCTAGTGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTTAGTACTAGTGCCTCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGGCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCACAGGAA.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGCACTAGTCCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAT.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTAATAGTGCCGCAGGA..................................................................................	21	1	1.00	1.00
..................................................................................................TAAGTACTAGTGCCGCAGGAGTT...............................................................................	23	1	1.00	1.00
.................................................................................................CTAAATACTAGTGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACCAGTGCCGCAGGA..................................................................................	21	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCGAAGG...................................................................................	20	1	1.00	1.00
.................................................................................................CTAAGTACTAxxGCCGCAGGAG.................................................................................	20	1	1.00	1.00
.................................................................................................CTAAGCACTAGTGCCGCAGGAGT................................................................................	23	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGTCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAxTGCCGCAGGAG.................................................................................	21	1	1.00	1.00
.................................................................................................CTAAGTACTAATGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTGA..............................................................................	25	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGCAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTCGTGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCTGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTTAGG............................................................................	27	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCAGAGG...................................................................................	20	1	1.00	1.00
.................................................................................................CTAAGTACTAGTxCCGCAGGAG.................................................................................	21	1	1.00	1.00
.................................................................................................CTAAGTACTAGCGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTACGTACTAGTGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCATGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGCGCCGCTGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCTGCGGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTCCTAGTGCCGCAGGA..................................................................................	21	1	1.00	1.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATTA....................................	22	1	1.00	1.00
.................................................................................................CCAAGTACTAATGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTCCTAGTGACGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTCAGTACTAGTGCCGCAGGA..................................................................................	21	1	1.00	1.00
.................................................................................................CTAAGTACGAGTGCCGCAGGAG.................................................................................	22	1	1.00	1.00
..............................................................................................................................................CCTGCTGCCCAAGTGCTTATT.....................................	21	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCCCAGGAG.................................................................................	22	1	1.00	1.00
...................................................................................................AAGTACTAGTGCCGCAGGAGT................................................................................	21	1	1.00	1.00
..................................................................................................TATGTACTAGTGCCGCAGGAG.................................................................................	21	1	1.00	1.00
.................................................................................................CCAAGTACTAGTGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGGGCCGCAGGAG.................................................................................	22	1	1.00	1.00
.................................................................................................CTAAGTACTAGTGCCGCAGGAGTT...............................................................................	24	1	1.00	1.00
...................................................................................................AAGTACTAGTGCCGCAGGAGTTT..............................................................................	23	1	1.00	1.00
.................................................................................................CTAAGTTCTAGTGCCACAGGAG.................................................................................	22	1	1.00	1.00
....................................................................................................AGTACTAGTGCCGCAGGAG.................................................................................	19	1	1.00	1.00
.................................................................................................CTAAGTACTATTGCCGCAGGAG.................................................................................	22	1	1.00	1.00

Generated: 04/20/2012 at 05:18:51 EDT

dme-mir-252

chr3R:9289941-9290033 -

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup