dme-mir-210- Best orthologs

dme-mir-210	chrX:18022252-18022351 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 18022304-18022325
   star strand at position 18022267-18022289
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chrX:18022237-18022366 +		1	CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC
droSim1	chrX_random:4635946-4636075 +	LASTZ	1	CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC
droSec1	super_8:332193-332322 +	LASTZ	1	CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC
droYak2	chrX:16646312-16646441 +	LASTZ	1	CCA-----------------T------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA------------------------------------------------------------------------------CCAGCCA-------------------------------TCGTCCCA--------------TA
droEre2	scaffold_4690:8350125-8350254 +	LASTZ	1	CCA-----------------C------------------------------GT---CG-CGAA-CCAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA------------------------------------------------------------------------------CCAGCCA-------------------------------TCGTCCCA--------------CA
droEug1	scf7180000408176:660268-660428 -	LASTZ	4	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGAATAGAAC---------------------------C--AAAA-AC--G----AGAACCAG---------CA-GCC-AACCAATCA-------------------------------TCATCCAA--------------TA
droBia1	scf7180000301760:580720-580858 -	LASTZ	4	CTG-----------------C------------------------------GC---CG-CGAG-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGA-----------------------G---------------------------GCAGCCAG---------CA-G-----CCAGCCA-------------------------------T----CCA--------------AT
droTak1	scf7180000415843:453822-453975 -	LASTZ	4	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGA-----------------------ACGGAACG---------------------------G---------AA-C-----CGA---A-------------------------------TCATCCAATAATCGAGGCTCCATC
droEle1	scf7180000491193:230657-230827 +	LASTZ	4	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGATTA--AC---CAGCACCACAAGCACCAAA--AGCACCAAA---A-------GCAGC-AG-------------------CAGCCA-------------------------------TCATCCAA--------------TA
droRho1	scf7180000779986:493851-494009 -	LASTZ	4	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGACTA--AC----------------------CAA-------CA-GCAGCAGAAGCAGC-AG---------CA-G------CCGCCA-------------------------------TCATCCAA--------------TA
droFic1	scf7180000453872:332227-332411 -	LASTZ	4	GTG-----------------C------------------------------GT---CG-CTCG-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGAACAGCACAGA-------------ACTGAACAAAAC--AAATC-CAG-----GCAGCCAGTCAGCCAGCCA-GCC-AGCCAGCCA-------------------------------GCAGCCCA--------------TC
droKik1	scf7180000302696:1725488-1725608 +	LASTZ	4	GAC-----------------T------------------------------CT---------A-TAAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACTA--------------------------------------------------------------------------------AGTCA-------------------------------TCATGCCG----------------
droAna3	scaffold_13335:1603991-1604112 -	LASTZ	1	GC-------------------------------------------------GT-------------TAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACCAATCA--------------------ACTGA-----------------------------------------------------CCA-------------------------------CCAG---A--------------TC
droBip1	scf7180000395454:64412-64524 +	LASTZ	4	GTG-----------------T------------------------------TT---CAACGAGCGTTAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------
dp4	chrXL_group3a:1970441-1970623 -	LASTZ	1	ATA-----------------T------------------------------GT---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA-----------------------ACTAAACAAACC--AAAA-AG-------GAAGT-TG---------AACGCCTA-------ATGCAATCGATGAGTGTTGGGTTGCTTCA-----GTT-----------------TC
droPer1	super_11:2708510-2708698 +	LASTZ	1	ATA-----------------T------------------------------GT---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA-----------------------ACTAAACAAACA--AAAA-AG-------GAAGT-TG---------AACGCCTA-------ATGCAATCGATGAGTGTTGGGTTGCTTCAGTTTCATTCCA----------------
droWil1	scaffold_181096:12033222-12033334 +	LASTZ	1	CAA-----------------T------------------------------CG---CA-AAAG-CATAACGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCAGAAAACGACCAG--------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12928:1257190-1257317 -	LASTZ	1	T--------------------------------------------------AT---AT-TTAA-ACGAGCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTC--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGAGAAACAGCGAAT-A--------------------------------------------------------------------T-----TTAACTA-------------------------------TTTTTCC-----------------
droMoj3	scaffold_6473:13732313-13732476 +	LASTZ	1	CCACATATACAGAGCATATATGTATATGCATATATCATACAAGTATATAGAATCCAGATCCATTGGGAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTC--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGATGCCAGAGAAGCAACA---------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15203:8453543-8453644 +	LASTZ	1	----------------------------------------------------------------------GGAGCTTATTGGAGCTGCTGGCCACTGCACAAGATTAGATTCAAAAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGATAA----CAT------------------------------------------------------------------------------CAAGCCA-------------------------------T-----------------------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC
droSim1	CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC
droSec1	CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC
droYak2	CCA-----------------T------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA------------------------------------------------------------------------------CCAGCCA-------------------------------TCGTCCCA--------------TA
droEre2	CCA-----------------C------------------------------GT---CG-CGAA-CCAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA------------------------------------------------------------------------------CCAGCCA-------------------------------TCGTCCCA--------------CA
droEug1	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGAATAGAAC---------------------------C--AAAA-AC--G----AGAACCAG---------CA-GCC-AACCAATCA-------------------------------TCATCCAA--------------TA
droBia1	CTG-----------------C------------------------------GC---CG-CGAG-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGA-----------------------G---------------------------GCAGCCAG---------CA-G-----CCAGCCA-------------------------------T----CCA--------------AT
droTak1	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGA-----------------------ACGGAACG---------------------------G---------AA-C-----CGA---A-------------------------------TCATCCAATAATCGAGGCTCCATC
droEle1	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGATTA--AC---CAGCACCACAAGCACCAAA--AGCACCAAA---A-------GCAGC-AG-------------------CAGCCA-------------------------------TCATCCAA--------------TA
droRho1	CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGACTA--AC----------------------CAA-------CA-GCAGCAGAAGCAGC-AG---------CA-G------CCGCCA-------------------------------TCATCCAA--------------TA
droFic1	GTG-----------------C------------------------------GT---CG-CTCG-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGAACAGCACAGA-------------ACTGAACAAAAC--AAATC-CAG-----GCAGCCAGTCAGCCAGCCA-GCC-AGCCAGCCA-------------------------------GCAGCCCA--------------TC
droKik1	GAC-----------------T------------------------------CT---------A-TAAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACTA--------------------------------------------------------------------------------AGTCA-------------------------------TCATGCCG----------------
droAna3	GC-------------------------------------------------GT-------------TAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACCAATCA--------------------ACTGA-----------------------------------------------------CCA-------------------------------CCAG---A--------------TC
droBip1	GTG-----------------T------------------------------TT---CAACGAGCGTTAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------
dp4	ATA-----------------T------------------------------GT---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA-----------------------ACTAAACAAACC--AAAA-AG-------GAAGT-TG---------AACGCCTA-------ATGCAATCGATGAGTGTTGGGTTGCTTCA-----GTT-----------------TC
droPer1	ATA-----------------T------------------------------GT---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA-----------------------ACTAAACAAACA--AAAA-AG-------GAAGT-TG---------AACGCCTA-------ATGCAATCGATGAGTGTTGGGTTGCTTCAGTTTCATTCCA----------------
droWil1	CAA-----------------T------------------------------CG---CA-AAAG-CATAACGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCAGAAAACGACCAG--------------------------------------------------------------------------------------------------------------------------------------------
droVir3	T--------------------------------------------------AT---AT-TTAA-ACGAGCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTC--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGAGAAACAGCGAAT-A--------------------------------------------------------------------T-----TTAACTA-------------------------------TTTTTCC-----------------
droMoj3	CCACATATACAGAGCATATATGTATATGCATATATCATACAAGTATATAGAATCCAGATCCATTGGGAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTC--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGATGCCAGAGAAGCAACA---------------------------------------------------------------------------------------------------------------------------------------------
droGri2	----------------------------------------------------------------------GGAGCTTATTGGAGCTGCTGGCCACTGCACAAGATTAGATTCAAAAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGATAA----CAT------------------------------------------------------------------------------CAAGCCA-------------------------------T-----------------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	524740.00	5.00	522666.00	750.00	1319.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	87949.00	0.00	87664.00	92.00	193.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	86735.00	11.00	86067.00	430.00	227.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	47705.00	10.00	47476.00	89.00	130.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	38109.00	4.00	37967.00	48.00	90.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	32557.00	1.00	32406.00	59.00	91.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	21	1	17308.00	0.00	17206.00	47.00	55.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	16821.00	1.00	16756.00	20.00	44.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	20	1	14174.00	0.00	14107.00	51.00	16.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	6452.00	1.00	6416.00	20.00	15.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	4607.00	1.00	4585.00	14.00	7.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	3712.00	32.00	3663.00	5.00	12.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	20	1	2833.00	0.00	2795.00	21.00	17.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCT......................................................................................................................................................................	21	1	2078.00	0.00	2059.00	1.00	18.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	1886.00	29.00	1848.00	3.00	6.00
........................................................................................................................CTTGTGCGTTTGACAGCGGCT......................................................................................................................................................................	21	1	1601.00	0.00	1595.00	1.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	1453.00	1.00	1439.00	2.00	11.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	1429.00	0.00	1423.00	1.00	5.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	1193.00	0.00	1188.00	0.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAC......................................................................................................................................................................	21	1	1146.00	0.00	1145.00	0.00	1.00
..........................................................................................................................CTTGCGTGTGACAGCGGCT......................................................................................................................................................................	19	1	1074.00	0.00	1067.00	2.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	1031.00	1.00	1026.00	2.00	2.00
........................................................................................................................CTTGTGCxTGTGACAGCGGCT......................................................................................................................................................................	20	1	1018.00	0.00	1010.00	1.00	7.00
........................................................................................................................CTTGTGCGGGTGACAGCGGCT......................................................................................................................................................................	21	1	985.00	0.00	985.00	0.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	952.00	0.00	949.00	1.00	2.00
........................................................................................................................CTTTTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	899.00	0.00	897.00	0.00	2.00
........................................................................................................................CTTGTGCxxGTGACAGCGGCT......................................................................................................................................................................	19	1	747.00	0.00	745.00	0.00	2.00
........................................................................................................................CTTGTGCCTGTGACAGCGGCT......................................................................................................................................................................	21	1	724.00	0.00	721.00	1.00	2.00
.........................................................................................................................TTGTGCTTGTGACAGCGGCT......................................................................................................................................................................	20	1	667.00	0.00	661.00	2.00	4.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	660.00	0.00	659.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	610.00	2.00	606.00	0.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGAC.......................................................................................................................................................................	20	1	573.00	0.00	571.00	0.00	2.00
........................................................................................................................CTTGTGCGTCTGACAGCGGCT......................................................................................................................................................................	21	1	562.00	0.00	560.00	1.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	520.00	0.00	520.00	0.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	500.00	0.00	499.00	0.00	1.00
........................................................................................................................CTTGTGTGTGTGACAGCGGCT......................................................................................................................................................................	21	1	496.00	0.00	494.00	0.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	479.00	0.00	475.00	1.00	3.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	459.00	1.00	455.00	1.00	2.00
.........................................................................................................................TTGTGCGTTTGACAGCGGCT......................................................................................................................................................................	20	1	459.00	0.00	455.00	2.00	2.00
........................................................................................................................CCTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	440.00	0.00	439.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	426.00	0.00	425.00	0.00	1.00
........................................................................................................................CTTGTCCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	420.00	0.00	419.00	0.00	1.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCC......................................................................................................................................................................	21	1	405.00	0.00	405.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	402.00	0.00	400.00	2.00	0.00
...........................................................................................................................CTGCGTGTGACAGCGGCT......................................................................................................................................................................	18	1	396.00	0.00	395.00	0.00	1.00
........................................................................................................................CTTGTxCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	389.00	0.00	386.00	1.00	2.00
.........................................................................................................................TTGTGCGTGTGACATCGGCT......................................................................................................................................................................	20	1	349.00	0.00	347.00	2.00	0.00
........................................................................................................................CTTCTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	343.00	0.00	341.00	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	303.00	0.00	301.00	1.00	1.00
.........................................................................................................................TTGTGCxTGTGACAGCGGCT......................................................................................................................................................................	19	1	303.00	0.00	303.00	0.00	0.00
........................................................................................................................CTTGTGCGTGGGACAGCGGCT......................................................................................................................................................................	21	1	300.00	0.00	298.00	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	300.00	0.00	296.00	4.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	296.00	0.00	295.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCT......................................................................................................................................................................	21	1	295.00	0.00	295.00	0.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	21	1	291.00	0.00	290.00	0.00	1.00
........................................................................................................................CTTGTGCGTTTGACAGCGGCC......................................................................................................................................................................	21	1	284.00	0.00	283.00	1.00	0.00
........................................................................................................................CTTGTGCGTGTCACAGCGGCT......................................................................................................................................................................	21	1	276.00	0.00	275.00	0.00	1.00
..........................................................................................................................CTTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	20	1	267.00	0.00	264.00	0.00	3.00
........................................................................................................................CTTGTGCATGTGACAGCGGCT......................................................................................................................................................................	21	1	262.00	0.00	261.00	1.00	0.00
........................................................................................................................CTTGTGCGTGTGACATCGGCC......................................................................................................................................................................	21	1	262.00	0.00	262.00	0.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGAC......................................................................................................................................................................	20	1	260.00	0.00	259.00	0.00	1.00
.........................................................................................................................CTTTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	250.00	0.00	250.00	0.00	0.00
........................................................................................................................CTTGTACGTGTGACAGCGGCT......................................................................................................................................................................	21	1	236.00	0.00	235.00	1.00	0.00
...........................................................................................................................TTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	19	1	234.00	0.00	233.00	0.00	1.00
.........................................................................................................................TTGTGCCTGTGACAGCGGCT......................................................................................................................................................................	20	1	231.00	0.00	231.00	0.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	230.00	0.00	227.00	1.00	2.00
........................................................................................................................CTTGTGCGTxTGACAGCGGCT......................................................................................................................................................................	20	1	225.00	0.00	225.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	225.00	0.00	222.00	2.00	1.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	221.00	0.00	221.00	0.00	0.00
...........................................................................................................................TTGCGTGTGACAGCGGCT......................................................................................................................................................................	18	1	220.00	0.00	218.00	0.00	2.00
.........................................................................................................................TTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	20	1	208.00	0.00	208.00	0.00	0.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	204.00	0.00	202.00	0.00	2.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	203.00	0.00	202.00	0.00	1.00
.........................................................................................................................TTGTGCxxGTGACAGCGGCT......................................................................................................................................................................	18	1	199.00	0.00	199.00	0.00	0.00
........................................................................................................................CTTGTxxGTGTGACAGCGGCT......................................................................................................................................................................	19	1	192.00	0.00	192.00	0.00	0.00
.........................................................................................................................TTGTTCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	186.00	0.00	186.00	0.00	0.00
.........................................................................................................................TTTTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	184.00	0.00	184.00	0.00	0.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	184.00	0.00	184.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCT......................................................................................................................................................................	21	1	180.00	0.00	180.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGATAGCGGCT......................................................................................................................................................................	21	1	176.00	0.00	175.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTTACAGCGGCT......................................................................................................................................................................	21	1	174.00	0.00	173.00	1.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGAC.......................................................................................................................................................................	19	1	173.00	0.00	173.00	0.00	0.00
........................................................................................................................CTTATGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	173.00	0.00	172.00	1.00	0.00
........................................................................................................................CTTGTGCGTGTGACGGCT.........................................................................................................................................................................	18	1	168.00	0.00	167.00	0.00	1.00
........................................................................................................................CTTTTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	167.00	0.00	167.00	0.00	0.00
.........................................................................................................................TTGTGCGTCTGACAGCGGCT......................................................................................................................................................................	20	1	164.00	0.00	163.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCC......................................................................................................................................................................	21	1	162.00	0.00	160.00	0.00	2.00
.........................................................................................................................TTTTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	159.00	0.00	158.00	1.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACC...................................................................................................................................................................	24	1	154.00	0.00	151.00	1.00	2.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCTT.....................................................................................................................................................................	22	1	152.00	0.00	151.00	0.00	1.00
........................................................................................................................CTTGTGCxTGTGACAGCGGCC......................................................................................................................................................................	20	1	152.00	0.00	151.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGTGGCT......................................................................................................................................................................	21	1	149.00	0.00	149.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGACT......................................................................................................................................................................	21	1	147.00	0.00	147.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACACCGGCT......................................................................................................................................................................	21	1	147.00	0.00	147.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTAACAGCGGCT......................................................................................................................................................................	21	1	143.00	0.00	143.00	0.00	0.00
.........................................................................................................................TTGTGCGGGTGACAGCGGCT......................................................................................................................................................................	20	1	142.00	0.00	142.00	0.00	0.00
........................................................................................................................CTTGTGCGTATGACAGCGGCT......................................................................................................................................................................	21	1	141.00	0.00	141.00	0.00	0.00
.........................................................................................................................TTGTGCGTTTGACAGCGGCTA.....................................................................................................................................................................	21	1	139.00	0.00	138.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGG.......................................................................................................................................................................	20	1	138.00	0.00	133.00	2.00	3.00
........................................................................................................................CTTTTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	132.00	0.00	132.00	0.00	0.00
...........................................................................................................................CTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	19	1	129.00	0.00	129.00	0.00	0.00

droSec1

CCA-----------------C------------------------------GT---CC-GGAA-CCGAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAG------------------------------------------------------------------------------CCAGCCA-------------------------------TTGTTCCA--------------TC	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	128751.00	393.00	124.00	128234.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	59465.00	162.00	134.00	59169.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	57140.00	142.00	123.00	56875.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	32192.00	55.00	40.00	32097.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	31314.00	661.00	55.00	30598.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	30387.00	104.00	44.00	30239.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	28191.00	75.00	29.00	28087.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	13944.00	37.00	14.00	13893.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	6925.00	48.00	5.00	6872.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	6379.00	17.00	17.00	6345.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	5829.00	15.00	7.00	5807.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	4601.00	13.00	5.00	4583.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	3971.00	14.00	5.00	3952.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	2422.00	6.00	3.00	2413.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	2154.00	4.00	4.00	2146.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	2064.00	3.00	0.00	2061.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	1545.00	2.00	6.00	1537.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	1329.00	3.00	3.00	1323.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	1318.00	6.00	1.00	1311.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	1315.00	2.00	1.00	1312.00
........................................................................................................................CTTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	20	1	1307.00	3.00	2.00	1302.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	1298.00	5.00	2.00	1291.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACC...................................................................................................................................................................	24	1	1249.00	2.00	11.00	1236.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	1174.00	2.00	4.00	1168.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	826.00	3.00	1.00	822.00
.........................................................................................................................TTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	19	1	766.00	2.00	0.00	764.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	755.00	1.00	0.00	754.00
.........................................................................................................................TTGTGCGTGTGACAGCGG........................................................................................................................................................................	18	1	643.00	1.00	0.00	642.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	603.00	6.00	0.00	597.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	21	1	595.00	9.00	1.00	585.00
.........................................................................................................................TTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	19	1	503.00	3.00	0.00	500.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	22	1	444.00	4.00	0.00	440.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	443.00	0.00	1.00	442.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	24	1	421.00	1.00	0.00	420.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACA...................................................................................................................................................................	24	1	411.00	1.00	2.00	408.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	20	1	405.00	2.00	0.00	403.00
.........................................................................................................................TTGTGCGTGTGACAGCGTA.......................................................................................................................................................................	19	1	361.00	1.00	0.00	360.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	20	1	355.00	5.00	0.00	350.00
.........................................................................................................................TTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	19	1	336.00	1.00	1.00	334.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTA....................................................................................................................................................................	22	1	328.00	3.00	0.00	325.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAT......................................................................................................................................................................	21	1	321.00	3.00	0.00	318.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	307.00	0.00	1.00	306.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTA....................................................................................................................................................................	23	1	302.00	0.00	0.00	302.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	272.00	0.00	0.00	272.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCT......................................................................................................................................................................	21	1	262.00	1.00	0.00	261.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	260.00	0.00	0.00	260.00
..................................................................................AGCTGCTGGCCACTGCACAAGA...........................................................................................................................................................................................................	22	1	253.00	0.00	4.00	249.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAAA...................................................................................................................................................................	24	1	249.00	0.00	0.00	249.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	245.00	0.00	0.00	245.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATAA..................................................................................................................................................................	25	1	244.00	1.00	1.00	242.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	240.00	1.00	2.00	237.00
........................................................................................................................CTTGTACGTGTGACAGCGGCT......................................................................................................................................................................	21	1	239.00	0.00	0.00	239.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAA......................................................................................................................................................................	21	1	235.00	0.00	0.00	235.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	24	1	224.00	0.00	0.00	224.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	222.00	1.00	0.00	221.00
........................................................................................................................CTTGTGCGTGTGACAGCG.........................................................................................................................................................................	18	1	208.00	0.00	0.00	208.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAAA...................................................................................................................................................................	23	1	207.00	0.00	0.00	207.00
.........................................................................................................................TTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	22	1	206.00	0.00	0.00	206.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	204.00	0.00	0.00	204.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATAT..................................................................................................................................................................	24	1	198.00	0.00	0.00	198.00
........................................................................................................................CTTGTGCATGTGACAGCGGCT......................................................................................................................................................................	21	1	192.00	0.00	0.00	192.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAGA...................................................................................................................................................................	23	1	192.00	1.00	0.00	191.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	188.00	1.00	1.00	186.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	187.00	0.00	0.00	187.00
..................................................................................AGCTGCTGGCCACTGCACAAGAT..........................................................................................................................................................................................................	23	1	176.00	0.00	2.00	174.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	23	1	175.00	1.00	0.00	174.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTA......................................................................................................................................................................	21	1	173.00	0.00	0.00	173.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTTA.....................................................................................................................................................................	21	1	170.00	3.00	0.00	167.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	170.00	0.00	1.00	169.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	167.00	2.00	2.00	163.00
..........................................................................................................................CTTGCGTGTGACAGCGGCT......................................................................................................................................................................	19	1	165.00	0.00	1.00	164.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	164.00	0.00	0.00	164.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	164.00	0.00	0.00	164.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	21	1	163.00	0.00	0.00	163.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	163.00	2.00	0.00	161.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATAA..................................................................................................................................................................	24	1	162.00	1.00	0.00	161.00
........................................................................................................................CTTGTGCGTGTGACAGCGACT......................................................................................................................................................................	21	1	156.00	5.00	0.00	151.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	152.00	0.00	0.00	152.00
........................................................................................................................CTTGTGCGTATGACAGCGGCT......................................................................................................................................................................	21	1	149.00	0.00	0.00	149.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATAT..................................................................................................................................................................	25	1	149.00	2.00	0.00	147.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	23	1	149.00	0.00	0.00	149.00
........................................................................................................................CTTGTGTGTGTGACAGCGGCT......................................................................................................................................................................	21	1	149.00	0.00	2.00	147.00
........................................................................................................................CTTGTCCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	146.00	1.00	0.00	145.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACT...................................................................................................................................................................	24	1	143.00	0.00	0.00	143.00
........................................................................................................................CCTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	141.00	0.00	0.00	141.00
.........................................................................................................................TTGTGCGTGTGACAGCGGAT......................................................................................................................................................................	20	1	139.00	7.00	0.00	132.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCT......................................................................................................................................................................	21	1	139.00	0.00	0.00	139.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	135.00	0.00	0.00	135.00
...........................................................................................................................TTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	20	1	134.00	0.00	1.00	133.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCT......................................................................................................................................................................	21	1	133.00	0.00	0.00	133.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCT......................................................................................................................................................................	21	1	132.00	7.00	0.00	125.00
..........................................................................................................................TGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	21	1	129.00	1.00	0.00	128.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	21	1	128.00	2.00	0.00	126.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCT......................................................................................................................................................................	21	1	127.00	0.00	0.00	127.00
........................................................................................................................CTTATGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	123.00	0.00	0.00	123.00
........................................................................................................................CTTGTGCGTGTGACAGCGCT.......................................................................................................................................................................	20	1	120.00	0.00	0.00	120.00
.........................................................................................................................TTGTGCTTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	120.00	1.00	0.00	119.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	21	1	117.00	0.00	0.00	117.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTTA.....................................................................................................................................................................	22	1	116.00	0.00	0.00	116.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTAA.....................................................................................................................................................................	22	1	114.00	0.00	0.00	114.00
........................................................................................................................CTTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	20	1	110.00	0.00	0.00	110.00

droYak2

CCA-----------------T------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA------------------------------------------------------------------------------CCAGCCA-------------------------------TCGTCCCA--------------TA	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	162775.00	3.00	39959.00	432.00	58282.00	64099.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	99456.00	20.00	43495.00	490.00	55077.00	374.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	95052.00	16.00	38500.00	444.00	54905.00	1187.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	63225.00	3.00	20486.00	738.00	27824.00	14174.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	49852.00	5.00	18620.00	260.00	24635.00	6332.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	47551.00	2.00	14129.00	188.00	22141.00	11091.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	14782.00	0.00	3755.00	60.00	6741.00	4226.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	14052.00	2.00	4904.00	84.00	6804.00	2258.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	12651.00	0.00	71.00	0.00	141.00	12439.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	7002.00	0.00	2344.00	49.00	3684.00	925.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	5579.00	0.00	2357.00	32.00	2613.00	577.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	23	1	3298.00	0.00	740.00	2.00	2552.00	4.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	3132.00	1.00	1311.00	14.00	1519.00	287.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	20	1	2782.00	0.00	31.00	0.00	48.00	2703.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	2716.00	0.00	743.00	14.00	1545.00	414.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	21	1	2568.00	0.00	62.00	0.00	104.00	2402.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	2545.00	0.00	716.00	0.00	1702.00	127.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	2520.00	0.00	833.00	23.00	1623.00	41.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	2346.00	0.00	769.00	4.00	1505.00	68.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	2254.00	0.00	929.00	5.00	1270.00	50.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	22	1	2038.00	1.00	454.00	0.00	1580.00	3.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	2014.00	0.00	972.00	12.00	990.00	40.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	1851.00	0.00	636.00	15.00	1197.00	3.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	1613.00	0.00	648.00	0.00	907.00	58.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	1448.00	1.00	568.00	11.00	858.00	10.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	1236.00	0.00	542.00	8.00	630.00	56.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	1132.00	0.00	452.00	0.00	660.00	20.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	1032.00	0.00	391.00	8.00	446.00	187.00
.........................................................................................................................TTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	19	1	960.00	0.00	391.00	3.00	563.00	3.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCT......................................................................................................................................................................	21	1	865.00	0.00	209.00	1.00	650.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	734.00	0.00	285.00	5.00	414.00	30.00
.........................................................................................................................TTGTGCGTGTGACAGCGG........................................................................................................................................................................	18	1	717.00	0.00	294.00	2.00	418.00	3.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCT......................................................................................................................................................................	21	1	675.00	0.00	47.00	1.00	622.00	5.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCTAT....................................................................................................................................................................	23	1	673.00	0.00	182.00	3.00	488.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	19	1	614.00	0.00	227.00	3.00	383.00	1.00
.........................................................................................................................TTGTGCGTGTGCCAGCGGCTAT....................................................................................................................................................................	22	1	571.00	0.00	97.00	0.00	473.00	1.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	563.00	0.00	123.00	0.00	440.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	20	1	561.00	0.00	19.00	0.00	30.00	512.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCTAT....................................................................................................................................................................	23	1	518.00	0.00	43.00	2.00	473.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	518.00	0.00	191.00	4.00	323.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	510.00	0.00	198.00	2.00	308.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	21	1	478.00	0.00	90.00	0.00	388.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	469.00	0.00	177.00	1.00	286.00	5.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCT......................................................................................................................................................................	21	1	454.00	0.00	97.00	0.00	351.00	6.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	397.00	0.00	89.00	0.00	166.00	142.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	391.00	0.00	138.00	3.00	250.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	24	1	387.00	0.00	125.00	0.00	246.00	16.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	23	1	374.00	0.00	136.00	0.00	233.00	5.00
.........................................................................................................................TTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	22	1	374.00	0.00	96.00	1.00	277.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCT......................................................................................................................................................................	21	1	371.00	0.00	163.00	1.00	203.00	4.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	23	1	360.00	0.00	73.00	0.00	285.00	2.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	22	1	335.00	0.00	68.00	0.00	267.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	331.00	0.00	54.00	1.00	245.00	31.00
.........................................................................................................................TTGTGCGTGTGACCGCGGCTAT....................................................................................................................................................................	22	1	327.00	0.00	72.00	0.00	255.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	327.00	0.00	88.00	1.00	183.00	55.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCT......................................................................................................................................................................	21	1	326.00	0.00	42.00	0.00	79.00	205.00
.........................................................................................................................TTGTGCGTTTGACAGCGGCTAT....................................................................................................................................................................	22	1	306.00	0.00	197.00	0.00	105.00	4.00
.........................................................................................................................TTGTGCGTGTGCCAGCGGCT......................................................................................................................................................................	20	1	305.00	0.00	42.00	0.00	234.00	29.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	303.00	0.00	86.00	4.00	210.00	3.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	24	1	293.00	0.00	86.00	2.00	197.00	8.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	291.00	0.00	48.00	1.00	236.00	6.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	291.00	0.00	85.00	0.00	199.00	7.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	286.00	0.00	37.00	1.00	135.00	113.00
........................................................................................................................CTTGTGCGTTTGACAGCGGCT......................................................................................................................................................................	21	1	282.00	0.00	38.00	0.00	95.00	149.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	281.00	0.00	51.00	0.00	123.00	107.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	274.00	0.00	52.00	0.00	203.00	19.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	271.00	0.00	33.00	0.00	236.00	2.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	271.00	0.00	70.00	2.00	136.00	63.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	24	1	269.00	0.00	93.00	2.00	174.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	23	1	267.00	0.00	126.00	1.00	139.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	23	1	265.00	0.00	59.00	0.00	206.00	0.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCT......................................................................................................................................................................	21	1	263.00	0.00	51.00	0.00	164.00	48.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCTA.....................................................................................................................................................................	22	1	262.00	0.00	76.00	0.00	185.00	1.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	259.00	0.00	40.00	2.00	183.00	34.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCTAT....................................................................................................................................................................	23	1	256.00	0.00	57.00	0.00	199.00	0.00
........................................................................................................................CTTGTGCGTGGGACAGCGGCT......................................................................................................................................................................	21	1	252.00	0.00	63.00	0.00	177.00	12.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	20	1	251.00	0.00	88.00	0.00	161.00	2.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	248.00	0.00	76.00	0.00	171.00	1.00
.........................................................................................................................TTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	22	1	244.00	0.00	75.00	1.00	168.00	0.00
.........................................................................................................................TTGTGCGTGTGCCAGCGGCTA.....................................................................................................................................................................	21	1	243.00	0.00	38.00	0.00	191.00	14.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	240.00	0.00	74.00	2.00	155.00	9.00
.........................................................................................................................TTGTGCGTGTGACATCGGCTAT....................................................................................................................................................................	22	1	233.00	0.00	87.00	0.00	140.00	6.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	232.00	0.00	49.00	0.00	181.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	231.00	0.00	59.00	0.00	172.00	0.00
........................................................................................................................CTTGTGCGTGTTACAGCGGCT......................................................................................................................................................................	21	1	231.00	0.00	64.00	0.00	150.00	17.00
.........................................................................................................................TTGTGCGTTTGACAGCGGCT......................................................................................................................................................................	20	1	223.00	0.00	103.00	0.00	58.00	62.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	212.00	0.00	40.00	1.00	165.00	6.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	207.00	0.00	35.00	0.00	134.00	38.00
........................................................................................................................CTTGTGCGTGTGACATCGGCTAT....................................................................................................................................................................	23	1	204.00	0.00	83.00	0.00	115.00	6.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	21	1	203.00	0.00	42.00	0.00	107.00	54.00
........................................................................................................................CTTGTGCGTGGGACAGCGGCTAT....................................................................................................................................................................	23	1	202.00	0.00	49.00	0.00	152.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	202.00	0.00	44.00	0.00	79.00	79.00
........................................................................................................................CTTGTGCGTGTGAAAGCGGCT......................................................................................................................................................................	21	1	200.00	0.00	59.00	0.00	133.00	8.00
.........................................................................................................................TTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	22	1	198.00	0.00	84.00	0.00	114.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	22	1	195.00	0.00	57.00	0.00	138.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	23	1	194.00	0.00	65.00	1.00	125.00	3.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCTA.....................................................................................................................................................................	22	1	193.00	0.00	19.00	1.00	172.00	1.00
.........................................................................................................................TTGTGCGTGTGGCAGCGGCTAT....................................................................................................................................................................	22	1	192.00	0.00	66.00	0.00	126.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAAA...................................................................................................................................................................	23	1	185.00	0.00	63.00	2.00	118.00	2.00
.........................................................................................................................TTGTGCGTGGGACAGCGGCTAT....................................................................................................................................................................	22	1	185.00	0.00	46.00	1.00	138.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGT........................................................................................................................................................................	18	1	184.00	0.00	79.00	0.00	104.00	1.00

droEre2

CCA-----------------C------------------------------GT---CG-CGAA-CCAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAA------------------------------------------------------------------------------CCAGCCA-------------------------------TCGTCCCA--------------CA	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	176408.00	37.00	44777.00	0.00	131594.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	170345.00	18.00	34656.00	0.00	135671.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	142182.00	18.00	34168.00	0.00	107996.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	58866.00	5.00	14750.00	0.00	44111.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	58178.00	8.00	13690.00	0.00	44480.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	54588.00	5.00	11553.00	0.00	43030.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	43186.00	3.00	5883.00	0.00	37300.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	24840.00	1.00	3207.00	0.00	21632.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	7814.00	1.00	1614.00	0.00	6199.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	7656.00	0.00	672.00	0.00	6984.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	7296.00	0.00	975.00	0.00	6321.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	6851.00	0.00	1245.00	0.00	5606.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	4911.00	1.00	772.00	0.00	4138.00
.........................................................................................................................TTGTGCGTGTGACAGCGG........................................................................................................................................................................	18	1	4279.00	0.00	252.00	0.00	4027.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	4132.00	1.00	902.00	0.00	3229.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	3700.00	4.00	597.00	0.00	3099.00
.........................................................................................................................TTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	19	1	3240.00	1.00	600.00	0.00	2639.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	2973.00	1.00	713.00	0.00	2259.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	2500.00	0.00	470.00	0.00	2030.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	2440.00	0.00	233.00	0.00	2207.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	2397.00	2.00	360.00	0.00	2035.00
.........................................................................................................................TTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	19	1	2366.00	0.00	355.00	0.00	2011.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	2210.00	1.00	321.00	0.00	1888.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	2121.00	0.00	314.00	0.00	1807.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	1520.00	0.00	183.00	0.00	1337.00
.........................................................................................................................TTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	22	1	1511.00	0.00	108.00	0.00	1403.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCT......................................................................................................................................................................	21	1	1446.00	0.00	82.00	0.00	1364.00
........................................................................................................................CTTGTGCGTGTGACAGCG.........................................................................................................................................................................	18	1	1411.00	0.00	86.00	0.00	1325.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	23	1	1392.00	1.00	82.00	0.00	1309.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	1372.00	0.00	22.00	0.00	1350.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	24	1	1264.00	0.00	166.00	0.00	1098.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	20	1	1224.00	0.00	269.00	0.00	955.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	1222.00	0.00	233.00	0.00	989.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	21	1	1201.00	0.00	127.00	0.00	1074.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	1156.00	0.00	281.00	0.00	875.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	1148.00	0.00	28.00	0.00	1120.00
........................................................................................................................CTTGTGCGTGTTACAGCGGCTAT....................................................................................................................................................................	23	1	1080.00	1.00	47.00	0.00	1032.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	1057.00	0.00	90.00	0.00	967.00
.........................................................................................................................TTGTGCGTGTTACAGCGGCTAT....................................................................................................................................................................	22	1	1054.00	0.00	73.00	0.00	981.00
........................................................................................................................CTTGTGCGTGTTACAGCGGCT......................................................................................................................................................................	21	1	975.00	0.00	58.00	0.00	917.00
..................................................................................AGCTGCTGGCCACTGCACAAGA...........................................................................................................................................................................................................	22	1	952.00	0.00	67.00	0.00	885.00
.........................................................................................................................TTGTGCGTGTGACATCGGCTAT....................................................................................................................................................................	22	1	924.00	0.00	143.00	0.00	781.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	23	1	900.00	0.00	754.00	0.00	146.00
........................................................................................................................CTTGTGCGTGTGACATCGGCTAT....................................................................................................................................................................	23	1	899.00	0.00	90.00	0.00	809.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	897.00	3.00	359.00	0.00	535.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	22	1	885.00	0.00	769.00	0.00	116.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	876.00	0.00	288.00	0.00	588.00
........................................................................................................................CTTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	20	1	832.00	0.00	132.00	0.00	700.00
.........................................................................................................................TTGTGCGTGTGACAGCGGATAT....................................................................................................................................................................	22	1	819.00	0.00	52.00	0.00	767.00
........................................................................................................................CTTGTGCGTGTGACAGCGGATAT....................................................................................................................................................................	23	1	801.00	0.00	20.00	0.00	781.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	800.00	0.00	68.00	0.00	732.00
.........................................................................................................................TTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	22	1	795.00	0.00	172.00	0.00	623.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	23	1	741.00	0.00	144.00	0.00	597.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	739.00	0.00	98.00	0.00	641.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	21	1	734.00	1.00	173.00	0.00	560.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAT......................................................................................................................................................................	21	1	727.00	0.00	68.00	0.00	659.00
.........................................................................................................................TTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	22	1	661.00	0.00	76.00	0.00	585.00
.........................................................................................................................TTGTGCGTGTGACAGCTGCT......................................................................................................................................................................	20	1	654.00	1.00	35.00	0.00	618.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATAA..................................................................................................................................................................	25	1	644.00	0.00	61.00	0.00	583.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	641.00	0.00	62.00	0.00	579.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	20	1	629.00	1.00	96.00	0.00	532.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	606.00	0.00	508.00	0.00	98.00
........................................................................................................................CTTGTGCGTGTGACAGCTGC.......................................................................................................................................................................	20	1	568.00	0.00	26.00	0.00	542.00
.........................................................................................................................TTGTGAGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	564.00	0.00	20.00	0.00	544.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	541.00	0.00	25.00	0.00	516.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	526.00	0.00	16.00	0.00	510.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	510.00	0.00	24.00	0.00	486.00
.........................................................................................................................TTGTTCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	500.00	0.00	13.00	0.00	487.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	492.00	0.00	39.00	0.00	453.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	467.00	0.00	81.00	0.00	386.00
.........................................................................................................................TTGTGCGTGTGACAGCGTA.......................................................................................................................................................................	19	1	456.00	0.00	29.00	0.00	427.00
.........................................................................................................................TTGTGCGTGTGACAGCTGCTA.....................................................................................................................................................................	21	1	454.00	0.00	36.00	0.00	418.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAAA...................................................................................................................................................................	24	1	449.00	0.00	53.00	0.00	396.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	439.00	0.00	365.00	0.00	74.00
..................................................................................AGCTGCTGGCCACTGCACAAGAT..........................................................................................................................................................................................................	23	1	438.00	3.00	42.00	0.00	393.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	434.00	0.00	122.00	0.00	312.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	421.00	0.00	6.00	0.00	415.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	418.00	0.00	68.00	0.00	350.00
.........................................................................................................................TTGTGCGTGTGACAGCAGCTAT....................................................................................................................................................................	22	1	407.00	0.00	120.00	0.00	287.00
.........................................................................................................................TTGTGCGTGTTACAGCGGCT......................................................................................................................................................................	20	1	398.00	0.00	18.00	0.00	380.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCTA.....................................................................................................................................................................	22	1	397.00	0.00	25.00	0.00	372.00
.........................................................................................................................TTGTGCGTTTGACAGCGGCTAT....................................................................................................................................................................	22	1	395.00	0.00	98.00	0.00	297.00
........................................................................................................................ATTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	378.00	0.00	4.00	0.00	374.00
.........................................................................................................................TTGTGCTTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	370.00	0.00	23.00	0.00	347.00
.........................................................................................................................TTGTGCGTGTTACAGCGGCTA.....................................................................................................................................................................	21	1	370.00	0.00	23.00	0.00	347.00
.........................................................................................................................TTGTGCGTGTGACATCGGCT......................................................................................................................................................................	20	1	369.00	0.00	54.00	0.00	315.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAAA...................................................................................................................................................................	23	1	357.00	0.00	58.00	0.00	299.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCTAT....................................................................................................................................................................	23	1	357.00	0.00	81.00	0.00	276.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	355.00	0.00	30.00	0.00	325.00
.........................................................................................................................TTGTGCGTGTGACAGTGGCTAT....................................................................................................................................................................	22	1	349.00	0.00	24.00	0.00	325.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	23	1	348.00	2.00	175.00	0.00	171.00
........................................................................................................................CTTGTGCGTGTTACAGCGGCTA.....................................................................................................................................................................	22	1	348.00	0.00	15.00	0.00	333.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	347.00	1.00	51.00	0.00	295.00
.........................................................................................................................TTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	22	1	344.00	0.00	65.00	0.00	279.00
.........................................................................................................................TTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	20	1	344.00	0.00	61.00	0.00	283.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	341.00	0.00	82.00	0.00	259.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATAA..................................................................................................................................................................	24	1	338.00	0.00	44.00	0.00	294.00
........................................................................................................................CTTGTGCGTGTGAAAGCGGCTAT....................................................................................................................................................................	23	1	333.00	0.00	32.00	0.00	301.00
.........................................................................................................................TTGTGCGTGTGACAGCGTCTA.....................................................................................................................................................................	21	1	333.00	0.00	55.00	0.00	278.00
.........................................................................................................................TTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	22	1	332.00	0.00	58.00	0.00	274.00
........................................................................................................................CTTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	20	1	328.00	0.00	38.00	0.00	290.00

droEug1

CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGAATAGAAC---------------------------C--AAAA-AC--G----AGAACCAG---------CA-GCC-AACCAATCA-------------------------------TCATCCAA--------------TA

Size

Hit Count

Total Norm

droBia1

CTG-----------------C------------------------------GC---CG-CGAG-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGA-----------------------G---------------------------GCAGCCAG---------CA-G-----CCAGCCA-------------------------------T----CCA--------------AT

Size

Hit Count

Total Norm

droTak1

CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGA-----------------------ACGGAACG---------------------------G---------AA-C-----CGA---A-------------------------------TCATCCAATAATCGAGGCTCCATC

Size

Hit Count

Total Norm

droEle1

CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGATTA--AC---CAGCACCACAAGCACCAAA--AGCACCAAA---A-------GCAGC-AG-------------------CAGCCA-------------------------------TCATCCAA--------------TA

Size

Hit Count

Total Norm

droRho1

CTG-----------------C------------------------------GT---CG-CGAA-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGACTA--AC----------------------CAA-------CA-GCAGCAGAAGCAGC-AG---------CA-G------CCGCCA-------------------------------TCATCCAA--------------TA

Size

Hit Count

Total Norm

droFic1

GTG-----------------C------------------------------GT---CG-CTCG-CCGAAAGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACAGAACAGCACAGA-------------ACTGAACAAAAC--AAATC-CAG-----GCAGCCAGTCAGCCAGCCA-GCC-AGCCAGCCA-------------------------------GCAGCCCA--------------TC

Size

Hit Count

Total Norm

droKik1

GAC-----------------T------------------------------CT---------A-TAAAAAGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACTA--------------------------------------------------------------------------------AGTCA-------------------------------TCATGCCG----------------

Size

Hit Count

Total Norm

droAna3

GC-------------------------------------------------GT-------------TAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAACCAATCA--------------------ACTGA-----------------------------------------------------CCA-------------------------------CCAG---A--------------TC	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	106537.00	4180.00	61601.00	40754.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	83040.00	1551.00	62234.00	19250.00	5.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	46759.00	1839.00	19989.00	24925.00	6.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	29868.00	572.00	21928.00	7367.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	20789.00	1692.00	6521.00	12573.00	3.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	19236.00	819.00	7720.00	10697.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	19235.00	698.00	12526.00	6009.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	10093.00	415.00	5957.00	3720.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	5759.00	326.00	2076.00	3356.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	5295.00	259.00	2803.00	2233.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	4310.00	108.00	3403.00	799.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	3236.00	174.00	1559.00	1503.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	3025.00	214.00	922.00	1889.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGG........................................................................................................................................................................	18	1	2484.00	25.00	594.00	1865.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	19	1	2238.00	162.00	515.00	1561.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	19	1	2181.00	166.00	547.00	1468.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	2000.00	84.00	1145.00	771.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	1460.00	67.00	1130.00	263.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	1448.00	68.00	699.00	681.00	0.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	1443.00	54.00	1306.00	83.00	0.00
........................................................................................................................CTTGTGCGTGTGACATCGGCTAT....................................................................................................................................................................	23	1	1434.00	16.00	1385.00	33.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	1398.00	32.00	748.00	618.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	1392.00	23.00	998.00	371.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	1266.00	9.00	1006.00	251.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	1077.00	81.00	310.00	686.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	964.00	22.00	794.00	148.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	856.00	13.00	386.00	456.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	854.00	4.00	72.00	777.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	817.00	31.00	337.00	449.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	809.00	9.00	662.00	138.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAT......................................................................................................................................................................	21	1	784.00	26.00	692.00	66.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	24	1	728.00	35.00	399.00	294.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGATAT....................................................................................................................................................................	23	1	717.00	10.00	684.00	23.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	696.00	39.00	380.00	277.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	653.00	10.00	501.00	142.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	21	1	651.00	22.00	526.00	103.00	0.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	639.00	21.00	594.00	24.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	622.00	15.00	409.00	198.00	0.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	621.00	8.00	605.00	8.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	605.00	26.00	268.00	311.00	0.00
........................................................................................................................CTGGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	588.00	0.00	465.00	123.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	20	1	583.00	34.00	120.00	429.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCG.........................................................................................................................................................................	18	1	548.00	8.00	318.00	222.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	542.00	4.00	265.00	273.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	536.00	8.00	478.00	50.00	0.00
.........................................................................................................................TTGTGCGTGTGACATCGGCTAT....................................................................................................................................................................	22	1	536.00	32.00	468.00	36.00	0.00
........................................................................................................................CTGGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	507.00	0.00	471.00	36.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	499.00	5.00	51.00	442.00	1.00
........................................................................................................................CTTGTGCGTGTGACATCGGCTA.....................................................................................................................................................................	22	1	457.00	6.00	435.00	16.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGT........................................................................................................................................................................	18	1	456.00	0.00	60.00	395.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	24	1	418.00	21.00	264.00	133.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	406.00	15.00	248.00	143.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	401.00	6.00	284.00	111.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	23	1	395.00	4.00	351.00	40.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCT......................................................................................................................................................................	21	1	390.00	10.00	328.00	52.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGTA.......................................................................................................................................................................	19	1	388.00	22.00	164.00	202.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	23	1	355.00	1.00	32.00	322.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	20	1	353.00	15.00	178.00	160.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	22	1	350.00	12.00	63.00	275.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	341.00	3.00	2.00	336.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGATAT....................................................................................................................................................................	22	1	339.00	9.00	274.00	56.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	322.00	3.00	259.00	60.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	320.00	6.00	36.00	277.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	21	1	310.00	30.00	135.00	145.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	21	1	309.00	17.00	143.00	149.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTG....................................................................................................................................................................	22	1	306.00	5.00	168.00	133.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	20	1	302.00	9.00	206.00	87.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	23	1	297.00	1.00	273.00	23.00	0.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	297.00	5.00	5.00	287.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATAA..................................................................................................................................................................	25	1	296.00	3.00	264.00	29.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGATA.....................................................................................................................................................................	22	1	296.00	2.00	280.00	14.00	0.00
........................................................................................................................CTTGTGCGTGTGACATCGGC.......................................................................................................................................................................	20	1	291.00	16.00	250.00	25.00	0.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	289.00	11.00	124.00	154.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	286.00	1.00	60.00	225.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	286.00	2.00	78.00	206.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	21	1	285.00	15.00	134.00	136.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	280.00	12.00	90.00	178.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	280.00	24.00	157.00	99.00	0.00
..................................................................................AGCTGCTGGCCACTGCACAAGAT..........................................................................................................................................................................................................	23	1	275.00	1.00	261.00	12.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	22	1	263.00	6.00	193.00	64.00	0.00
.........................................................................................................................TTGTTCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	262.00	9.00	240.00	13.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCAAT....................................................................................................................................................................	23	1	254.00	13.00	240.00	1.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	249.00	5.00	126.00	118.00	0.00
..................................................................................AGCTGCTGGCCACTGCACAAGA...........................................................................................................................................................................................................	22	1	231.00	1.00	212.00	18.00	0.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	226.00	5.00	29.00	192.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	19	1	225.00	22.00	70.00	133.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCT......................................................................................................................................................................	21	1	223.00	4.00	43.00	176.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGTG.......................................................................................................................................................................	19	1	222.00	18.00	44.00	160.00	0.00
.........................................................................................................................TTGTGCGTGTGACATCGGCTA.....................................................................................................................................................................	21	1	221.00	11.00	188.00	22.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTG....................................................................................................................................................................	23	1	218.00	8.00	124.00	86.00	0.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	216.00	2.00	210.00	4.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	22	1	213.00	9.00	56.00	147.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	22	1	209.00	17.00	102.00	90.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCG.........................................................................................................................................................................	17	1	206.00	0.00	0.00	206.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	201.00	8.00	105.00	88.00	0.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	198.00	8.00	110.00	80.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGT........................................................................................................................................................................	19	1	197.00	11.00	93.00	93.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	23	1	193.00	4.00	116.00	73.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCCAT....................................................................................................................................................................	23	1	192.00	9.00	166.00	17.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCGAT....................................................................................................................................................................	23	1	189.00	12.00	161.00	16.00	0.00
........................................................................................................................CTTGTGCGTGTGACACCGGCT......................................................................................................................................................................	21	1	188.00	10.00	50.00	128.00	0.00

droBip1

GTG-----------------T------------------------------TT---CAACGAGCGTTAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATAGAAGCAAC----------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

dp4

ATA-----------------T------------------------------GT---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA-----------------------ACTAAACAAACC--AAAA-AG-------GAAGT-TG---------AACGCCTA-------ATGCAATCGATGAGTGTTGGGTTGCTTCA-----GTT-----------------TC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	54444.00	879.00	23.00	53540.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	48122.00	855.00	8.00	47126.00	133.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	42966.00	501.00	25.00	42440.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	23117.00	516.00	8.00	22555.00	38.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	19049.00	288.00	6.00	18739.00	16.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	18347.00	306.00	7.00	18029.00	5.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	15793.00	418.00	0.00	15366.00	9.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	4535.00	116.00	5.00	4411.00	3.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	3268.00	62.00	1.00	3201.00	4.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	2340.00	74.00	0.00	2266.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	2154.00	61.00	0.00	2093.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	19	1	2060.00	57.00	0.00	2003.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	1904.00	37.00	0.00	1867.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	1654.00	23.00	0.00	1631.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGG........................................................................................................................................................................	18	1	1554.00	5.00	0.00	1549.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	1083.00	16.00	0.00	1065.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	886.00	9.00	1.00	876.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	640.00	10.00	0.00	630.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	628.00	7.00	1.00	620.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	552.00	7.00	0.00	545.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	545.00	8.00	1.00	536.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	487.00	9.00	0.00	478.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	486.00	5.00	0.00	481.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	23	1	484.00	2.00	0.00	482.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	370.00	8.00	0.00	362.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	308.00	2.00	0.00	306.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	307.00	3.00	0.00	304.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	19	1	267.00	6.00	0.00	261.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	19	1	249.00	6.00	0.00	243.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	22	1	234.00	1.00	0.00	233.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	193.00	6.00	1.00	186.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	20	1	191.00	5.00	0.00	186.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	187.00	1.00	0.00	186.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	24	1	186.00	9.00	0.00	177.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	183.00	1.00	0.00	182.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	177.00	0.00	0.00	177.00	0.00
........................................................................................................................CTAGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	176.00	0.00	0.00	176.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	169.00	1.00	0.00	168.00	0.00
.........................................................................................................................TTATGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	160.00	1.00	0.00	159.00	0.00
........................................................................................................................CTAGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	158.00	0.00	0.00	158.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCG.........................................................................................................................................................................	18	1	154.00	1.00	0.00	153.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	153.00	0.00	1.00	152.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGT........................................................................................................................................................................	18	1	153.00	0.00	0.00	153.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	148.00	2.00	0.00	146.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACC...................................................................................................................................................................	24	1	145.00	2.00	2.00	141.00	0.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	143.00	0.00	0.00	143.00	0.00
........................................................................................................................CTCGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	139.00	1.00	0.00	138.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	137.00	1.00	0.00	136.00	0.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	135.00	1.00	0.00	134.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	135.00	1.00	0.00	134.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	20	1	122.00	2.00	0.00	120.00	0.00
........................................................................................................................CTCGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	120.00	0.00	0.00	120.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGT........................................................................................................................................................................	19	1	120.00	1.00	2.00	117.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	116.00	0.00	0.00	116.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	113.00	2.00	0.00	111.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	112.00	0.00	0.00	112.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	106.00	0.00	0.00	106.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAAA...................................................................................................................................................................	24	1	105.00	3.00	0.00	102.00	0.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCTAT....................................................................................................................................................................	23	1	101.00	1.00	0.00	100.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	100.00	0.00	0.00	100.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	98.00	0.00	0.00	98.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	20	1	97.00	2.00	0.00	95.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	23	1	96.00	0.00	0.00	96.00	0.00
.........................................................................................................................TTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	22	1	96.00	1.00	0.00	95.00	0.00
........................................................................................................................CTGGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	94.00	0.00	0.00	94.00	0.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCT......................................................................................................................................................................	21	1	94.00	0.00	0.00	94.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATAA..................................................................................................................................................................	25	1	93.00	3.00	0.00	90.00	0.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	93.00	0.00	0.00	93.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	92.00	1.00	0.00	91.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCTAT....................................................................................................................................................................	23	1	90.00	0.00	0.00	90.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCT......................................................................................................................................................................	21	1	88.00	1.00	0.00	87.00	0.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCT......................................................................................................................................................................	21	1	87.00	1.00	0.00	86.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	22	1	85.00	0.00	0.00	85.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	83.00	0.00	0.00	83.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCT......................................................................................................................................................................	21	1	81.00	0.00	0.00	81.00	0.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCTAT....................................................................................................................................................................	23	1	81.00	0.00	0.00	81.00	0.00
........................................................................................................................CTGGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	80.00	0.00	0.00	80.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	23	1	79.00	1.00	0.00	78.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	24	1	79.00	1.00	0.00	78.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	22	1	79.00	0.00	1.00	78.00	0.00
.........................................................................................................................TTGCGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	78.00	0.00	0.00	78.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	77.00	0.00	0.00	77.00	0.00
........................................................................................................................CTAGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	77.00	0.00	0.00	77.00	0.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	76.00	2.00	0.00	74.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	76.00	2.00	0.00	69.00	5.00
.........................................................................................................................TTATGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	75.00	0.00	0.00	75.00	0.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCTAT....................................................................................................................................................................	23	1	75.00	0.00	0.00	75.00	0.00
.........................................................................................................................TTCTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	75.00	0.00	0.00	75.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	74.00	0.00	0.00	74.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	24	1	73.00	2.00	0.00	71.00	0.00
........................................................................................................................CTTGAGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	72.00	0.00	0.00	72.00	0.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCT......................................................................................................................................................................	21	1	72.00	1.00	0.00	71.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	71.00	1.00	0.00	70.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCTAT....................................................................................................................................................................	23	1	70.00	1.00	0.00	69.00	0.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	69.00	1.00	0.00	68.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	68.00	0.00	0.00	68.00	0.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCT......................................................................................................................................................................	21	1	64.00	0.00	0.00	64.00	0.00
.........................................................................................................................TTATGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	64.00	0.00	0.00	64.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	23	1	63.00	1.00	0.00	62.00	0.00
.........................................................................................................................TTGTGCGTGTGGCAGCGGCTAT....................................................................................................................................................................	22	1	63.00	2.00	0.00	61.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	21	1	63.00	5.00	0.00	58.00	0.00

droPer1

ATA-----------------T------------------------------GT---GATTTAGCTCGATCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGATTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCATATTAGCATCAAA-----------------------ACTAAACAAACA--AAAA-AG-------GAAGT-TG---------AACGCCTA-------ATGCAATCGATGAGTGTTGGGTTGCTTCAGTTTCATTCCA----------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	205948.00	1097.00	7.00	62039.00	142799.00	6.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	165786.00	1668.00	4.00	44319.00	119493.00	302.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	135337.00	621.00	7.00	48492.00	86217.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	75432.00	529.00	3.00	21432.00	53447.00	21.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	49038.00	582.00	1.00	16686.00	31726.00	43.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	42278.00	253.00	3.00	13929.00	28070.00	23.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	12981.00	154.00	0.00	4071.00	8754.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	11721.00	151.00	1.00	3138.00	8426.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	6339.00	61.00	0.00	1477.00	4786.00	15.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	5217.00	32.00	0.00	1285.00	3898.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	5183.00	16.00	0.00	1003.00	4164.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	4126.00	27.00	0.00	1236.00	2862.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	3656.00	69.00	0.00	1332.00	2255.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	23	1	2955.00	0.00	0.00	538.00	2417.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	2947.00	0.00	0.00	254.00	2690.00	3.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	2896.00	13.00	1.00	903.00	1979.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	2594.00	24.00	0.00	676.00	1894.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	2306.00	15.00	0.00	709.00	1582.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	1987.00	6.00	1.00	424.00	1556.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	1705.00	5.00	0.00	554.00	1144.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	1515.00	12.00	1.00	194.00	1307.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	1396.00	4.00	0.00	509.00	883.00	0.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	1382.00	0.00	0.00	113.00	1269.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGG........................................................................................................................................................................	18	1	1370.00	3.00	0.00	542.00	825.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	1188.00	0.00	0.00	177.00	1011.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	1003.00	1.00	0.00	42.00	960.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	970.00	2.00	0.00	114.00	852.00	2.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	956.00	2.00	0.00	317.00	637.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	22	1	927.00	0.00	0.00	218.00	709.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	908.00	0.00	0.00	36.00	872.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	19	1	893.00	8.00	0.00	282.00	603.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	882.00	3.00	0.00	137.00	742.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	829.00	2.00	0.00	236.00	585.00	6.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	758.00	1.00	0.00	86.00	671.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	741.00	3.00	0.00	125.00	613.00	0.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	732.00	2.00	0.00	104.00	626.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	714.00	4.00	0.00	143.00	567.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	665.00	6.00	0.00	167.00	492.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	24	1	647.00	0.00	0.00	63.00	584.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	630.00	1.00	0.00	103.00	526.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	608.00	1.00	0.00	103.00	504.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	596.00	0.00	0.00	95.00	501.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	584.00	0.00	0.00	66.00	518.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	575.00	1.00	0.00	97.00	477.00	0.00
........................................................................................................................CTTGAGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	573.00	0.00	0.00	56.00	517.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	562.00	2.00	0.00	108.00	452.00	0.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	551.00	2.00	0.00	32.00	517.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCT......................................................................................................................................................................	21	1	549.00	1.00	0.00	83.00	465.00	0.00
........................................................................................................................CTTGAGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	537.00	0.00	0.00	48.00	489.00	0.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCT......................................................................................................................................................................	21	1	526.00	0.00	0.00	43.00	483.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	22	1	508.00	0.00	0.00	74.00	434.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	23	1	506.00	0.00	0.00	71.00	435.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	23	1	490.00	0.00	0.00	59.00	431.00	0.00
........................................................................................................................CTGGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	465.00	0.00	0.00	23.00	442.00	0.00
........................................................................................................................CTTGTGCGTGGGACAGCGGCTAT....................................................................................................................................................................	23	1	463.00	1.00	0.00	33.00	429.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCTAT....................................................................................................................................................................	23	1	462.00	0.00	0.00	93.00	369.00	0.00
........................................................................................................................CTTGTGCGTGGGACAGCGGCT......................................................................................................................................................................	21	1	458.00	1.00	0.00	25.00	432.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	445.00	0.00	0.00	46.00	399.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	437.00	8.00	0.00	113.00	316.00	0.00
........................................................................................................................CGTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	428.00	0.00	0.00	33.00	395.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	22	1	427.00	0.00	0.00	111.00	316.00	0.00
.........................................................................................................................TTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	22	1	426.00	1.00	0.00	107.00	318.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	23	1	424.00	2.00	1.00	80.00	341.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	420.00	4.00	0.00	69.00	347.00	0.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCTAT....................................................................................................................................................................	23	1	408.00	0.00	0.00	77.00	331.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	403.00	0.00	0.00	54.00	349.00	0.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	402.00	0.00	0.00	48.00	354.00	0.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	396.00	1.00	0.00	37.00	358.00	0.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCTAT....................................................................................................................................................................	23	1	383.00	0.00	0.00	41.00	342.00	0.00
........................................................................................................................CTTGTACGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	380.00	1.00	0.00	295.00	84.00	0.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCT......................................................................................................................................................................	21	1	372.00	0.00	0.00	60.00	312.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	370.00	7.00	0.00	80.00	283.00	0.00
.........................................................................................................................TTGTGAGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	366.00	1.00	0.00	263.00	102.00	0.00
........................................................................................................................CGTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	365.00	0.00	0.00	24.00	341.00	0.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCT......................................................................................................................................................................	21	1	365.00	0.00	0.00	57.00	308.00	0.00
........................................................................................................................CTTGTGCGTGTGACACCGGCT......................................................................................................................................................................	21	1	362.00	0.00	0.00	38.00	324.00	0.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	362.00	0.00	0.00	26.00	336.00	0.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCTAT....................................................................................................................................................................	23	1	354.00	0.00	0.00	69.00	285.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	353.00	0.00	0.00	139.00	212.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	345.00	2.00	0.00	54.00	251.00	38.00
........................................................................................................................CTTGTGCGTGTGAAAGCGGCTAT....................................................................................................................................................................	23	1	342.00	0.00	0.00	60.00	282.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	23	1	339.00	2.00	0.00	75.00	262.00	0.00
........................................................................................................................CTGGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	336.00	0.00	0.00	17.00	319.00	0.00
........................................................................................................................CTTGTGCGGGTGACAGCGGCTAT....................................................................................................................................................................	23	1	334.00	0.00	0.00	20.00	314.00	0.00
........................................................................................................................CTTGTGCGGGTGACAGCGGCT......................................................................................................................................................................	21	1	331.00	0.00	0.00	18.00	312.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAAA...................................................................................................................................................................	24	1	330.00	3.00	0.00	80.00	247.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	328.00	0.00	0.00	13.00	315.00	0.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCTAT....................................................................................................................................................................	23	1	328.00	3.00	0.00	95.00	230.00	0.00
........................................................................................................................CTTGTGCGTGTGAAAGCGGCT......................................................................................................................................................................	21	1	326.00	0.00	0.00	56.00	270.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	320.00	1.00	0.00	47.00	272.00	0.00
........................................................................................................................CTTGTGCGTGTGACACCGGCTAT....................................................................................................................................................................	23	1	319.00	0.00	0.00	39.00	280.00	0.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	313.00	0.00	0.00	57.00	256.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	21	1	309.00	3.00	0.00	61.00	245.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACC...................................................................................................................................................................	24	1	305.00	7.00	0.00	62.00	236.00	0.00
.........................................................................................................................TTGTGCGTGGGACAGCGGCTAT....................................................................................................................................................................	22	1	301.00	1.00	0.00	26.00	274.00	0.00
........................................................................................................................CCTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	301.00	0.00	0.00	69.00	232.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCG.........................................................................................................................................................................	18	1	290.00	0.00	0.00	73.00	217.00	0.00
........................................................................................................................CTTGTACGTGTGACAGCGGCT......................................................................................................................................................................	21	1	288.00	0.00	0.00	213.00	75.00	0.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCT......................................................................................................................................................................	21	1	287.00	3.00	0.00	53.00	231.00	0.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCTAT....................................................................................................................................................................	23	1	279.00	1.00	0.00	54.00	224.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTTAT....................................................................................................................................................................	23	1	274.00	2.00	0.00	44.00	228.00	0.00

droWil1

CAA-----------------T------------------------------CG---CA-AAAG-CATAACGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTT--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGGCCAGAAAACGACCAG--------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	280240.00	960.00	231.00	51271.00	227778.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	132927.00	1100.00	328.00	124433.00	7066.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	91810.00	1025.00	331.00	88771.00	1683.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	66516.00	433.00	143.00	19208.00	46732.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	52235.00	695.00	72.00	17221.00	34247.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	28651.00	358.00	80.00	12600.00	15613.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	27664.00	1.00	0.00	58.00	27605.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	10117.00	63.00	11.00	7273.00	2770.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	8835.00	82.00	32.00	7836.00	885.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	7925.00	53.00	17.00	1130.00	6725.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	7835.00	78.00	39.00	3554.00	4164.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	21	1	5986.00	0.00	1.00	13.00	5972.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACC...................................................................................................................................................................	24	1	4141.00	35.00	9.00	2748.00	1349.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	20	1	4096.00	2.00	0.00	20.00	4074.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	2629.00	10.00	1.00	1121.00	1497.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	2338.00	26.00	8.00	2202.00	102.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	1998.00	18.00	3.00	1228.00	749.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	1750.00	5.00	1.00	825.00	919.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	1367.00	27.00	5.00	727.00	608.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	1312.00	13.00	1.00	1291.00	7.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	1230.00	20.00	5.00	1103.00	102.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	1198.00	1.00	0.00	663.00	534.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCT......................................................................................................................................................................	21	1	1118.00	0.00	0.00	51.00	1067.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAAC...................................................................................................................................................................	24	1	1067.00	0.00	0.00	256.00	811.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	1054.00	27.00	14.00	351.00	662.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACT...................................................................................................................................................................	24	1	1027.00	8.00	3.00	663.00	353.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	997.00	4.00	5.00	852.00	136.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	963.00	29.00	13.00	902.00	19.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	891.00	1.00	0.00	60.00	830.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	20	1	886.00	0.00	0.00	4.00	882.00
.........................................................................................................................TTGTGCGTGTGACAGTGGCTAT....................................................................................................................................................................	22	1	855.00	0.00	1.00	854.00	0.00
........................................................................................................................CTTGTGCGTTTGACAGCGGCT......................................................................................................................................................................	21	1	810.00	0.00	0.00	28.00	782.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACA...................................................................................................................................................................	24	1	730.00	12.00	3.00	588.00	127.00
........................................................................................................................CTTGTGCGTGTGACAGTGGCTAT....................................................................................................................................................................	23	1	727.00	1.00	0.00	721.00	5.00
..................................................................................AGCTGCTGGCCACTGCACAAGAT..........................................................................................................................................................................................................	23	1	698.00	0.00	13.00	566.00	119.00
..................................................................................AGCTGCTGGCCACTGCACAAGA...........................................................................................................................................................................................................	22	1	635.00	1.00	13.00	474.00	147.00
..........................................................................................................................CTTGCGTGTGACAGCGGCT......................................................................................................................................................................	19	1	628.00	0.00	0.00	63.00	565.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	620.00	2.00	0.00	65.00	553.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	607.00	3.00	2.00	481.00	121.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	605.00	7.00	2.00	433.00	163.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	580.00	2.00	0.00	83.00	495.00
........................................................................................................................CTTGTGCGTGTGACAGCGGATAT....................................................................................................................................................................	23	1	573.00	0.00	0.00	573.00	0.00
........................................................................................................................CTTGTGCxTGTGACAGCGGCT......................................................................................................................................................................	20	1	547.00	0.00	0.00	10.00	537.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	518.00	0.00	0.00	517.00	1.00
........................................................................................................................CTTTTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	512.00	0.00	0.00	25.00	487.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	498.00	12.00	2.00	360.00	124.00
........................................................................................................................CTTGTGCGTGTGAAAGCGGCTAT....................................................................................................................................................................	23	1	493.00	0.00	0.00	492.00	1.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	486.00	0.00	1.00	128.00	357.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	443.00	2.00	1.00	435.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	23	1	423.00	2.00	0.00	411.00	10.00
.........................................................................................................................TTGTGTGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	418.00	1.00	0.00	414.00	3.00
.........................................................................................................................TTGTGCGTGTGACAGCGGATAT....................................................................................................................................................................	22	1	418.00	1.00	0.00	417.00	0.00
..........................................................................................................................CTTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	20	1	405.00	1.00	1.00	41.00	362.00
........................................................................................................................CTTGTGCCTGTGACAGCGGCT......................................................................................................................................................................	21	1	400.00	0.00	0.00	46.00	354.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTTAT....................................................................................................................................................................	23	1	399.00	0.00	0.00	395.00	4.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCTAT....................................................................................................................................................................	23	1	380.00	1.00	0.00	374.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAAT...................................................................................................................................................................	24	1	380.00	1.00	0.00	180.00	199.00
.........................................................................................................................CTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	376.00	2.00	0.00	373.00	1.00
.........................................................................................................................TTGTGCTTGTGACAGCGGCT......................................................................................................................................................................	20	1	375.00	1.00	0.00	17.00	357.00
.........................................................................................................................TTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	22	1	374.00	0.00	0.00	374.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	366.00	6.00	0.00	68.00	292.00
.........................................................................................................................TTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	22	1	358.00	0.00	0.00	356.00	2.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	353.00	4.00	0.00	341.00	8.00
........................................................................................................................CTTGTGTGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	352.00	1.00	0.00	340.00	11.00
.........................................................................................................................TTGTGCGTGTGACAGxGGCTAT....................................................................................................................................................................	21	1	351.00	2.00	0.00	349.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCAGCTAT....................................................................................................................................................................	22	1	349.00	1.00	0.00	347.00	1.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	349.00	1.00	0.00	105.00	243.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	23	1	339.00	2.00	1.00	321.00	15.00
........................................................................................................................CTTGTGTGTGTGACAGCGGCT......................................................................................................................................................................	21	1	335.00	0.00	0.00	111.00	224.00
.........................................................................................................................TTGTGAGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	333.00	0.00	0.00	333.00	0.00
.........................................................................................................................TTGTGCGTGTGAAAGCGGCTAT....................................................................................................................................................................	22	1	332.00	0.00	0.00	326.00	6.00
........................................................................................................................CTTGTGCxxGTGACAGCGGCT......................................................................................................................................................................	19	1	329.00	0.00	0.00	21.00	308.00
........................................................................................................................CTTGTGCATGTGACAGCGGCTAT....................................................................................................................................................................	23	1	326.00	0.00	0.00	323.00	3.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	321.00	1.00	1.00	164.00	155.00
........................................................................................................................CTTGTGCGTGTGACAGxGGCTAT....................................................................................................................................................................	22	1	313.00	0.00	0.00	312.00	1.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	312.00	0.00	0.00	310.00	2.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTTAT....................................................................................................................................................................	22	1	311.00	1.00	0.00	309.00	1.00
..........................................................................................................................CTTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	21	1	303.00	1.00	0.00	216.00	86.00
........................................................................................................................CTTGTGCGTGTAACAGCGGCTAT....................................................................................................................................................................	23	1	300.00	1.00	1.00	295.00	3.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	298.00	1.00	1.00	295.00	1.00
..................................................................................AGCTGCTGGCCACTGCACAAGACC.........................................................................................................................................................................................................	24	1	295.00	0.00	0.00	138.00	157.00
........................................................................................................................CTTGTGCGTGTGACAGCGACTAT....................................................................................................................................................................	23	1	295.00	0.00	0.00	293.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCxGCTAT....................................................................................................................................................................	22	1	284.00	2.00	1.00	280.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAC......................................................................................................................................................................	21	1	270.00	0.00	0.00	0.00	270.00
........................................................................................................................CTTGTGCATGTGACAGCGGCT......................................................................................................................................................................	21	1	257.00	1.00	0.00	140.00	116.00
.........................................................................................................................TTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	22	1	256.00	5.00	2.00	243.00	6.00
........................................................................................................................CCTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	255.00	2.00	0.00	89.00	164.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCT......................................................................................................................................................................	21	1	247.00	1.00	0.00	147.00	99.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAT......................................................................................................................................................................	21	1	245.00	0.00	1.00	226.00	18.00
........................................................................................................................CTTGTGCGTGTGACAACGGCTAT....................................................................................................................................................................	23	1	244.00	0.00	1.00	241.00	2.00
........................................................................................................................CTTGTACGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	240.00	0.00	1.00	238.00	1.00
........................................................................................................................CTTGTGCGTCTGACAGCGGCT......................................................................................................................................................................	21	1	239.00	0.00	0.00	34.00	205.00
........................................................................................................................CTTGTCCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	237.00	1.00	0.00	58.00	178.00
.........................................................................................................................TTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	22	1	236.00	2.00	1.00	233.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	229.00	1.00	0.00	210.00	18.00
.........................................................................................................................TTGTGCGTGTGACAGCxGCTAT....................................................................................................................................................................	21	1	228.00	0.00	1.00	226.00	1.00
........................................................................................................................CTTGTGCGTATGACAGCGGCTAT....................................................................................................................................................................	23	1	228.00	1.00	0.00	222.00	5.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	227.00	0.00	0.00	5.00	222.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCTA.....................................................................................................................................................................	22	1	225.00	1.00	0.00	23.00	201.00
.........................................................................................................................TTGTGCGTGTGACAGGGGCTAT....................................................................................................................................................................	22	1	222.00	0.00	0.00	221.00	1.00
........................................................................................................................CTTTTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	221.00	0.00	0.00	7.00	214.00

droVir3

T--------------------------------------------------AT---AT-TTAA-ACGAGCGGTACTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTC--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGAGAAACAGCGAAT-A--------------------------------------------------------------------T-----TTAACTA-------------------------------TTTTTCC-----------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	282678.00	197.00	126375.00	9.00	2732.00	153365.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	74295.00	96.00	72948.00	12.00	11.00	1228.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	62420.00	108.00	61933.00	7.00	9.00	363.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	48550.00	47.00	33410.00	5.00	247.00	14841.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	42272.00	257.00	26865.00	2.00	430.00	14718.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	29673.00	48.00	23236.00	6.00	111.00	6272.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	25950.00	2.00	258.00	0.00	358.00	25332.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	17154.00	16.00	9466.00	0.00	151.00	7521.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	12949.00	23.00	9277.00	1.00	68.00	3580.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	10084.00	13.00	8352.00	0.00	13.00	1706.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	21	1	7501.00	0.00	187.00	0.00	169.00	7145.00
.........................................................................................................................TTGTGCGTGTGACAGCGG........................................................................................................................................................................	18	1	6635.00	6.00	6547.00	0.00	0.00	82.00
.........................................................................................................................TTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	19	1	3842.00	6.00	3811.00	0.00	0.00	25.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	3515.00	11.00	2629.00	0.00	22.00	853.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	3318.00	8.00	3260.00	0.00	1.00	49.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	2895.00	5.00	2796.00	2.00	2.00	90.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	20	1	2559.00	0.00	99.00	0.00	63.00	2397.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	2310.00	0.00	2092.00	0.00	5.00	213.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	2248.00	4.00	1928.00	0.00	4.00	312.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	2007.00	4.00	1680.00	0.00	16.00	307.00
.........................................................................................................................TTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	19	1	1858.00	1.00	1787.00	0.00	1.00	69.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	1649.00	2.00	1495.00	0.00	1.00	151.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	1383.00	5.00	1348.00	1.00	0.00	29.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	1212.00	4.00	1054.00	0.00	3.00	151.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	23	1	1043.00	0.00	1033.00	1.00	0.00	9.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	961.00	2.00	956.00	0.00	0.00	3.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	914.00	2.00	904.00	0.00	0.00	8.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	913.00	2.00	860.00	0.00	0.00	51.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	900.00	0.00	885.00	1.00	0.00	14.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	848.00	0.00	796.00	0.00	1.00	51.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	20	1	779.00	0.00	48.00	0.00	27.00	704.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	22	1	702.00	0.00	700.00	0.00	2.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	697.00	0.00	675.00	0.00	3.00	19.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	693.00	1.00	655.00	0.00	2.00	35.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	691.00	3.00	562.00	0.00	2.00	124.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	658.00	0.00	359.00	0.00	6.00	293.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	656.00	5.00	620.00	0.00	0.00	31.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	623.00	0.00	378.00	0.00	0.00	245.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	602.00	0.00	602.00	0.00	0.00	0.00
........................................................................................................................CGTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	562.00	0.00	553.00	0.00	0.00	9.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	516.00	0.00	487.00	0.00	1.00	28.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	509.00	0.00	324.00	0.00	6.00	179.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	482.00	0.00	481.00	0.00	0.00	1.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCT......................................................................................................................................................................	21	1	472.00	0.00	70.00	0.00	11.00	391.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	20	1	471.00	1.00	464.00	0.00	0.00	6.00
.........................................................................................................................TTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	19	1	464.00	1.00	452.00	0.00	0.00	11.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	21	1	442.00	0.00	319.00	0.00	4.00	119.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	425.00	0.00	350.00	0.00	3.00	72.00
.........................................................................................................................TTGTGCGTGTGACAGCGT........................................................................................................................................................................	18	1	422.00	0.00	389.00	0.00	0.00	33.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	394.00	1.00	190.00	0.00	2.00	201.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	389.00	0.00	304.00	0.00	2.00	83.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	387.00	0.00	387.00	0.00	0.00	0.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	386.00	0.00	386.00	0.00	0.00	0.00
........................................................................................................................CTTGAGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	378.00	0.00	326.00	0.00	0.00	52.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	365.00	0.00	163.00	0.00	7.00	195.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCT......................................................................................................................................................................	21	1	362.00	0.00	347.00	0.00	0.00	15.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	353.00	0.00	308.00	0.00	2.00	43.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	345.00	0.00	344.00	0.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	343.00	0.00	334.00	0.00	0.00	9.00
........................................................................................................................CTTGTGCGTTTGACAGCGGCT......................................................................................................................................................................	21	1	342.00	0.00	58.00	0.00	6.00	278.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCT......................................................................................................................................................................	21	1	341.00	0.00	335.00	0.00	0.00	6.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCT......................................................................................................................................................................	21	1	327.00	0.00	317.00	0.00	0.00	10.00
........................................................................................................................CTTGTGCGTGTGACAGCGGAC......................................................................................................................................................................	21	1	324.00	0.00	4.00	0.00	5.00	315.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	322.00	0.00	310.00	0.00	1.00	11.00
........................................................................................................................CTTGTGCGTGGGACAGCGGCT......................................................................................................................................................................	21	1	307.00	0.00	265.00	0.00	1.00	41.00
........................................................................................................................CTGGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	305.00	0.00	300.00	0.00	0.00	5.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	300.00	0.00	289.00	0.00	1.00	10.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	296.00	1.00	178.00	0.00	2.00	115.00
........................................................................................................................CTTGTGCGTGTGACAGCGGA.......................................................................................................................................................................	20	1	290.00	0.00	268.00	0.00	2.00	20.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	290.00	0.00	290.00	0.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	24	1	282.00	0.00	273.00	0.00	0.00	9.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	21	1	280.00	0.00	270.00	0.00	0.00	10.00
.........................................................................................................................TTGTGCGTGTGACAGCGTA.......................................................................................................................................................................	19	1	280.00	0.00	271.00	0.00	1.00	8.00
........................................................................................................................CTTGTGCGTGTGACACCGGCT......................................................................................................................................................................	21	1	280.00	0.00	262.00	0.00	1.00	17.00
........................................................................................................................CCTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	272.00	0.00	142.00	0.00	2.00	128.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	23	1	270.00	0.00	267.00	0.00	0.00	3.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	268.00	0.00	141.00	0.00	2.00	125.00
........................................................................................................................CTTGTGCGTGTGAAAGCGGCT......................................................................................................................................................................	21	1	265.00	0.00	256.00	0.00	0.00	9.00
........................................................................................................................CGTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	254.00	0.00	254.00	0.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCT......................................................................................................................................................................	21	1	246.00	0.00	152.00	0.00	0.00	94.00
..........................................................................................................................CTTGCGTGTGACAGCGGCT......................................................................................................................................................................	19	1	246.00	0.00	3.00	0.00	11.00	232.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	24	1	237.00	1.00	236.00	0.00	0.00	0.00
.........................................................................................................................TTGTGCGTGGGACAGCGGCTAT....................................................................................................................................................................	22	1	232.00	0.00	232.00	0.00	0.00	0.00
........................................................................................................................CTTGTTCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	232.00	0.00	43.00	0.00	7.00	182.00
........................................................................................................................CTTGTGTGTGTGACAGCGGCT......................................................................................................................................................................	21	1	226.00	0.00	118.00	0.00	1.00	107.00
.........................................................................................................................TTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	21	1	225.00	0.00	224.00	0.00	0.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	23	1	221.00	0.00	219.00	0.00	0.00	2.00
........................................................................................................................CTTGTGCxTGTGACAGCGGCT......................................................................................................................................................................	20	1	215.00	0.00	1.00	0.00	8.00	206.00
........................................................................................................................CTTTTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	212.00	0.00	39.00	0.00	3.00	170.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	211.00	0.00	211.00	0.00	0.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCT......................................................................................................................................................................	21	1	207.00	1.00	131.00	0.00	2.00	73.00
........................................................................................................................CTTGTCCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	205.00	0.00	139.00	0.00	0.00	66.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	20	1	203.00	2.00	185.00	0.00	0.00	16.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	24	1	202.00	0.00	168.00	0.00	1.00	33.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCT......................................................................................................................................................................	21	1	201.00	0.00	193.00	0.00	0.00	8.00
........................................................................................................................CTTGTGCGTGTGACTGCGGCT......................................................................................................................................................................	21	1	199.00	0.00	193.00	0.00	0.00	6.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	192.00	0.00	190.00	0.00	0.00	2.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	192.00	0.00	187.00	0.00	1.00	4.00
........................................................................................................................CGTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	188.00	0.00	188.00	0.00	0.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	22	1	186.00	0.00	186.00	0.00	0.00	0.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	185.00	0.00	181.00	0.00	0.00	4.00

droMoj3

CCACATATACAGAGCATATATGTATATGCATATATCATACAAGTATATAGAATCCAGATCCATTGGGAACGGTGCTTATTGCAGCTGCTGGCCACTGCACAAGATTAGACTC--AAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGATGCCAGAGAAGCAACA---------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	227877.00	1560.00	124396.00	101916.00	5.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	179738.00	1986.00	99192.00	78534.00	26.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	122354.00	1287.00	66786.00	54259.00	22.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	52828.00	573.00	30934.00	21319.00	2.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	38104.00	329.00	21378.00	16391.00	6.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	33452.00	470.00	18085.00	14896.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	22	1	29188.00	193.00	17327.00	11668.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	17355.00	181.00	8908.00	8262.00	4.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	12389.00	239.00	8305.00	3843.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	23	1	9678.00	56.00	5376.00	4246.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	23	1	9540.00	69.00	4808.00	4663.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	9299.00	139.00	6073.00	3086.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTT.....................................................................................................................................................................	21	1	6397.00	56.00	3697.00	2644.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	25	1	6238.00	83.00	4318.00	1837.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	22	1	4644.00	0.00	1705.00	2939.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	23	1	4566.00	1.00	988.00	3575.00	2.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTT..................................................................................................................................................................	24	1	3684.00	42.00	2637.00	1005.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	23	1	3391.00	23.00	1531.00	1837.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTT....................................................................................................................................................................	22	1	3281.00	21.00	1907.00	1353.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGG........................................................................................................................................................................	19	1	2648.00	34.00	1646.00	968.00	0.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCT......................................................................................................................................................................	21	1	2109.00	0.00	294.00	1815.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	24	1	2032.00	14.00	1210.00	808.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	1783.00	25.00	816.00	941.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAC....................................................................................................................................................................	22	1	1750.00	4.00	849.00	897.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGT.......................................................................................................................................................................	20	1	1623.00	8.00	902.00	713.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTCT....................................................................................................................................................................	22	1	1600.00	2.00	338.00	1259.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTT......................................................................................................................................................................	21	1	1372.00	5.00	863.00	504.00	0.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCTAT....................................................................................................................................................................	23	1	1365.00	0.00	194.00	1171.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCA......................................................................................................................................................................	21	1	1344.00	13.00	730.00	601.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAA....................................................................................................................................................................	22	1	1324.00	4.00	661.00	659.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	24	1	1293.00	22.00	743.00	528.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	1267.00	13.00	716.00	538.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	23	1	1255.00	2.00	667.00	586.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTG.....................................................................................................................................................................	22	1	1175.00	3.00	722.00	450.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAG....................................................................................................................................................................	22	1	1087.00	0.00	559.00	528.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACT...................................................................................................................................................................	24	1	1059.00	9.00	604.00	446.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTC.....................................................................................................................................................................	21	1	1020.00	0.00	312.00	708.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	24	1	870.00	1.00	418.00	451.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGTTT.....................................................................................................................................................................	22	1	812.00	10.00	476.00	326.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	781.00	0.00	651.00	130.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTTT...................................................................................................................................................................	23	1	776.00	3.00	468.00	305.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTTTT..................................................................................................................................................................	25	1	744.00	6.00	441.00	297.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACC...................................................................................................................................................................	24	1	682.00	2.00	371.00	308.00	1.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCT......................................................................................................................................................................	21	1	680.00	0.00	342.00	338.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCT......................................................................................................................................................................	21	1	674.00	1.00	387.00	286.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	23	1	667.00	5.00	444.00	218.00	0.00
........................................................................................................................TTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	638.00	0.00	525.00	113.00	0.00
.........................................................................................................................TTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	638.00	2.00	382.00	254.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTA....................................................................................................................................................................	23	1	627.00	10.00	354.00	263.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATC...................................................................................................................................................................	23	1	625.00	1.00	336.00	288.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTG....................................................................................................................................................................	23	1	614.00	0.00	394.00	220.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	601.00	1.00	415.00	185.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCT......................................................................................................................................................................	21	1	599.00	0.00	267.00	332.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAAT...................................................................................................................................................................	24	1	585.00	0.00	243.00	342.00	0.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCT......................................................................................................................................................................	21	1	569.00	0.00	252.00	317.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCT......................................................................................................................................................................	21	1	546.00	0.00	362.00	184.00	0.00
........................................................................................................................CTTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	23	1	539.00	4.00	319.00	216.00	0.00
.........................................................................................................................TTGGGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	531.00	1.00	363.00	167.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCT......................................................................................................................................................................	21	1	489.00	3.00	291.00	195.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATTTT.................................................................................................................................................................	26	1	482.00	20.00	356.00	106.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAAT...................................................................................................................................................................	23	1	480.00	0.00	142.00	338.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCT......................................................................................................................................................................	21	1	465.00	1.00	122.00	342.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATG...................................................................................................................................................................	24	1	463.00	8.00	309.00	146.00	0.00
.........................................................................................................................TTGTGCGTGTGACCGCGGCTAT....................................................................................................................................................................	22	1	458.00	0.00	69.00	389.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATAT..................................................................................................................................................................	25	1	453.00	6.00	264.00	183.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	449.00	2.00	335.00	112.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATTTT.................................................................................................................................................................	25	1	446.00	7.00	343.00	96.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTGT....................................................................................................................................................................	23	1	429.00	5.00	286.00	138.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTTG....................................................................................................................................................................	22	1	423.00	1.00	243.00	179.00	0.00
........................................................................................................................CTTGCGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	418.00	3.00	289.00	126.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCG......................................................................................................................................................................	21	1	414.00	0.00	206.00	208.00	0.00
........................................................................................................................CGTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	411.00	0.00	226.00	185.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	23	1	410.00	3.00	264.00	143.00	0.00
........................................................................................................................CTTGTGCGTGTGAAAGCGGCT......................................................................................................................................................................	21	1	409.00	0.00	218.00	191.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTACA...................................................................................................................................................................	24	1	406.00	6.00	231.00	169.00	0.00
........................................................................................................................ATTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	389.00	1.00	290.00	98.00	0.00
........................................................................................................................CTTGTGCGTGGGACAGCGGCT......................................................................................................................................................................	21	1	386.00	0.00	201.00	185.00	0.00
........................................................................................................................CTTGTGCGTGTGACACCGGCT......................................................................................................................................................................	21	1	379.00	1.00	267.00	111.00	0.00
........................................................................................................................CTTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	21	1	377.00	1.00	251.00	125.00	0.00
........................................................................................................................CTTGTGCGTGTGTCAGCGGCTAT....................................................................................................................................................................	23	1	371.00	0.00	208.00	163.00	0.00
........................................................................................................................CTTGTGCGTGTGACATCGGCT......................................................................................................................................................................	21	1	369.00	3.00	143.00	223.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGTCTAT....................................................................................................................................................................	23	1	368.00	5.00	147.00	216.00	0.00
........................................................................................................................CTTGGGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	367.00	1.00	235.00	131.00	0.00
.........................................................................................................................TTGTGCGTGTGCCAGCGGCTAT....................................................................................................................................................................	22	1	366.00	0.00	72.00	294.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCTGCTAT....................................................................................................................................................................	23	1	365.00	2.00	77.00	286.00	0.00
........................................................................................................................CTTGTGCGTGTGGCAGCGGCT......................................................................................................................................................................	21	1	364.00	1.00	202.00	161.00	0.00
........................................................................................................................CTTGTGCGTGTGACCGCGGCTA.....................................................................................................................................................................	22	1	363.00	0.00	48.00	315.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	21	1	362.00	1.00	206.00	155.00	0.00
........................................................................................................................CTTGTGCGTGTTACAGCGGCT......................................................................................................................................................................	21	1	362.00	0.00	152.00	210.00	0.00
........................................................................................................................CTTGTGCGTGTGCCAGCGGCTAT....................................................................................................................................................................	23	1	359.00	0.00	154.00	205.00	0.00
........................................................................................................................CCTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	353.00	0.00	190.00	163.00	0.00
........................................................................................................................CTTGTGCGCGTGACAGCGGCTAT....................................................................................................................................................................	23	1	345.00	5.00	206.00	134.00	0.00
.........................................................................................................................TTGTGCGTGCGACAGCGGCTAT....................................................................................................................................................................	22	1	332.00	2.00	205.00	124.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCC....................................................................................................................................................................	23	1	328.00	0.00	105.00	223.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCAGCT......................................................................................................................................................................	21	1	322.00	3.00	117.00	202.00	0.00
........................................................................................................................CTTGAGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	318.00	0.00	259.00	59.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTTC....................................................................................................................................................................	23	1	318.00	2.00	166.00	150.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGCCT......................................................................................................................................................................	21	1	317.00	0.00	247.00	70.00	0.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTCTT...................................................................................................................................................................	24	1	311.00	0.00	74.00	237.00	0.00
.........................................................................................................................TTGTGCGTGTGACAGAGGCTAT....................................................................................................................................................................	22	1	307.00	1.00	204.00	102.00	0.00
........................................................................................................................CTTGTGCGTGTGACGGCGGCT......................................................................................................................................................................	21	1	302.00	1.00	188.00	113.00	0.00

droGri2

----------------------------------------------------------------------GGAGCTTATTGGAGCTGCTGGCCACTGCACAAGATTAGATTCAAAAGACTCTTGTGCGTGTGACAGCGGCTATTGTAAGAGACCAGATAA----CAT------------------------------------------------------------------------------CAAGCCA-------------------------------T-----------------------	Size	Hit Count	Total Norm	V109 Male body
.........................................................................................................................TTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	54.00	54.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	40.00	40.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	20	1	32.00	32.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCT......................................................................................................................................................................	21	1	25.00	25.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	21	1	9.00	9.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	2.00	2.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCCATT...................................................................................................................................................................	24	1	1.00	1.00
.........................................................................................................................TTGTGAGTGTGACAGCGGCT......................................................................................................................................................................	20	1	1.00	1.00
.........................................................................................................................TCGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	1.00	1.00
.........................................................................................................................TTATGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	1.00	1.00
.........................................................................................................................TTTTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	22	1	1.00	1.00
.......................................................................................................................TCTTGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	24	1	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGTT.......................................................................................................................................................................	19	1	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	19	1	1.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	24	1	1.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGTGGCTAT....................................................................................................................................................................	23	1	1.00	1.00
.........................................................................................................................TTGTGCGTTTGACAGCGGCTA.....................................................................................................................................................................	21	1	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATA...................................................................................................................................................................	23	1	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGCCTAT....................................................................................................................................................................	22	1	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCTATT...................................................................................................................................................................	23	1	1.00	1.00
........................................................................................................................CTCGTGCGTGTGACAGCGGCTAT....................................................................................................................................................................	23	1	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACAGCGGCC......................................................................................................................................................................	20	1	1.00	1.00
..........................................................................................................................TGTGCGTGTGACAGCGGCT......................................................................................................................................................................	19	1	1.00	1.00
........................................................................................................................CTTGTGCTTGTGACAGCGGCTA.....................................................................................................................................................................	22	1	1.00	1.00
.........................................................................................................................TTGTGCCTGTGACAGCGGCT......................................................................................................................................................................	20	1	1.00	1.00
...............................................................................AGAAGCTGCTGGCCACTG..................................................................................................................................................................................................................	18	1	1.00	1.00
........................................................................................................................CTTGTGCGTGTGACAGCGGC.......................................................................................................................................................................	20	1	1.00	1.00
.........................................................................................................................TTGTGCGTGTGACATCGGCT......................................................................................................................................................................	20	1	1.00	1.00

Generated: 04/20/2012 at 05:20:59 EDT

dme-mir-210

chrX:18022252-18022351 +

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup