dme-mir-13b-2- Best orthologs

dme-mir-13b-2	chrX:8985263-8985332 +	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intron

Legend:

   mature strand at position 8985308-8985330
   star strand at position 8985270-8985293
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chrX:8985248-8985347 +		1	TCTAC-C---T------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GACAGCCAGC-CT
droSim1	chrX_random:2632466-2632565 +	LASTZ	1	TCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT
droSec1	super_34:345603-345702 +	LASTZ	1	CCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT
droYak2	chrX:12330556-12330651 -	LASTZ	1	CTTAC-C---C------------------------------CTG---------CTGTCTAGTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGCTG-GCCAGTC-----T
droEre2	scaffold_4690:6132295-6132393 -	LASTZ	1	TTTAA-ACCCC------------------------------CTG---------CTGTCTATTAGCGCGTCAAAGTGACTGTGAACTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCC-----C
droEug1	scf7180000409631:397666-397764 +	LASTZ	4	CTTAC-C---T------------------------------TTG---------CTGTCTATTAACGCGTTAAAATGACTGTGAGCTATGT----TGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGGCAC--AT
droBia1	scf7180000301760:4584588-4584685 +	LASTZ	4	T--AC-T---T------------------------------CTG---------CTGTCTATCAGCGCGTCAAAATGACTGTGAGCTATGT----GCATTTAA-CCTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCATGCGC--AT
droTak1	scf7180000415169:933669-933769 -	LASTZ	4	TTTATAC---C------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GCCAGTCGCA-TT
droEle1	scf7180000491006:2500520-2500618 +	LASTZ	4	TCTGC-T---A------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAACTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGGTG-GGCAGGCAC--AT
droRho1	scf7180000779841:510723-510818 +	LASTZ	4	TTCAG-C---T------------------------------TTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGGCA-----
droFic1	scf7180000453829:954200-954296 +	LASTZ	4	TCCATCA---T------------------------------CTG---------CTGTCTTTCAAAGCGTCAAGATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGGCG-GACAGCC-----T
droKik1	scf7180000301542:45346-45455 +	LASTZ	4	TCTCC-TCCAC------------------CTGTGCT-----TTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGTT---GAATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGATG-GACAGACTC--AT
droAna3	scaffold_13047:797460-797571 +	LASTZ	1	TGTCC-CGCTT------------------------------CTGCTTCATTACCTGTTTCCCAGCGCGTCGAAATGACTGTGACTTATGC----GTATTTGA-TGTCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGTGAAA-GT
droBip1	scf7180000396431:582372-582471 +	LASTZ	4	GCTAA-T---C------------------------------TTG---------CTGTTTCCCAACGCGTCGAAATGACTGTGACTTATGC----GTATTTGA-TGCCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGTCATA-AC
dp4	chrXL_group1e:7000785-7000885 -	LASTZ	1	GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droPer1	super_13:1553253-1553353 +	LASTZ	1	GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droWil1	scaffold_180777:2053037-2053171 +	LASTZ	1	TCCCCCA-ATGTACCTACCCCTGCAACTGCTGTGCTTACAACTG---------ATGTCCATGGTCGCGTCAAAATGACTGTGAGCTATGTTAACCGGTCAGAAATTCATATCACAGCCATTTTGACGAGTTCGATG-GGCATACG----A
droVir3	scaffold_12970:9304312-9304422 +	LASTZ	1	TCTCTCG-CTG------------------C------TGCCAATG---------CTCCATATTGGCGCGTCAAAATGACTGTGAGCTATGTTGTTGCATTTGCCATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----
droMoj3	scaffold_6473:13342549-13342650 -	LASTZ	1	TCCTC-T---A------------------------------ATG---------CTCCATATTTGCGCGTCAAATTGACTGTGAGCTATGT----TTATGAGATTATCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCACC-AA
droGri2	scaffold_15203:306998-307104 +	LASTZ	1	TCGTT-GC----------------------------TATCAGTG---------CTCCATATTGGCGCGTCAAATTGACTGTGAGCTATGTTGTTGCAGTTGTAATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TCTAC-C---T------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GACAGCCAGC-CT
droSim1	TCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT
droSec1	CCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT
droYak2	CTTAC-C---C------------------------------CTG---------CTGTCTAGTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGCTG-GCCAGTC-----T
droEre2	TTTAA-ACCCC------------------------------CTG---------CTGTCTATTAGCGCGTCAAAGTGACTGTGAACTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCC-----C
droEug1	CTTAC-C---T------------------------------TTG---------CTGTCTATTAACGCGTTAAAATGACTGTGAGCTATGT----TGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGGCAC--AT
droBia1	T--AC-T---T------------------------------CTG---------CTGTCTATCAGCGCGTCAAAATGACTGTGAGCTATGT----GCATTTAA-CCTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCATGCGC--AT
droTak1	TTTATAC---C------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GCCAGTCGCA-TT
droEle1	TCTGC-T---A------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAACTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGGTG-GGCAGGCAC--AT
droRho1	TTCAG-C---T------------------------------TTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGGCA-----
droFic1	TCCATCA---T------------------------------CTG---------CTGTCTTTCAAAGCGTCAAGATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGGCG-GACAGCC-----T
droKik1	TCTCC-TCCAC------------------CTGTGCT-----TTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGTT---GAATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGATG-GACAGACTC--AT
droAna3	TGTCC-CGCTT------------------------------CTGCTTCATTACCTGTTTCCCAGCGCGTCGAAATGACTGTGACTTATGC----GTATTTGA-TGTCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGTGAAA-GT
droBip1	GCTAA-T---C------------------------------TTG---------CTGTTTCCCAACGCGTCGAAATGACTGTGACTTATGC----GTATTTGA-TGCCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGTCATA-AC
dp4	GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droPer1	GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC
droWil1	TCCCCCA-ATGTACCTACCCCTGCAACTGCTGTGCTTACAACTG---------ATGTCCATGGTCGCGTCAAAATGACTGTGAGCTATGTTAACCGGTCAGAAATTCATATCACAGCCATTTTGACGAGTTCGATG-GGCATACG----A
droVir3	TCTCTCG-CTG------------------C------TGCCAATG---------CTCCATATTGGCGCGTCAAAATGACTGTGAGCTATGTTGTTGCATTTGCCATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----
droMoj3	TCCTC-T---A------------------------------ATG---------CTCCATATTTGCGCGTCAAATTGACTGTGAGCTATGT----TTATGAGATTATCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCACC-AA
droGri2	TCGTT-GC----------------------------TATCAGTG---------CTCCATATTGGCGCGTCAAATTGACTGTGAGCTATGTTGTTGCAGTTGTAATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	5	9791.00	8331.60	960.20	102.00	397.20
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	5	3518.20	2829.40	343.20	113.40	232.20
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	5	1500.60	603.00	714.20	79.20	104.20
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	5	1024.00	970.80	32.00	0.40	20.80
............................................................................................................TATCACAGCCATTTTGACG.......................	19	5	378.60	1.60	350.40	18.40	8.20
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	5	260.40	232.40	2.00	1.00	25.00
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	5	180.60	134.60	39.80	1.20	5.00
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	5	145.20	25.20	68.00	10.20	41.80
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	3	217.33	169.00	1.00	0.00	47.33
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	5	98.00	97.80	0.20	0.00	0.00
................................................................................................................ACAGCCATTTTGACGAGT....................	18	5	85.80	78.40	6.40	0.40	0.60
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	5	82.00	13.60	52.60	5.20	10.60
............................................................................................................TATCACAGCCATTTTGACGA......................	20	5	72.40	19.20	47.00	3.40	2.80
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	5	69.40	8.60	58.20	0.80	1.80
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	5	53.40	43.40	6.40	2.80	0.80
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	5	47.20	46.60	0.60	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	5	40.40	40.40	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAC.....................	21	5	39.20	0.00	33.40	2.60	3.20
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	5	32.80	9.40	10.40	0.60	12.40
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	5	30.80	30.20	0.20	0.20	0.20
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	5	27.00	20.00	1.60	1.60	3.80
............................................................................................................TATCACAGCCATTTTGATG.......................	19	5	22.20	0.20	21.40	0.60	0.00
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	5	20.80	20.80	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGAC........................	18	5	19.00	0.00	15.40	1.80	1.80
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	5	19.00	18.80	0.20	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	5	18.60	7.00	9.60	2.00	0.00
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	5	18.20	18.20	0.00	0.00	0.00
.................................................................GCGTCAAAATGACTGTGAGCT................................................................	21	2	45.00	1.00	27.50	7.00	9.50
............................................................................................................TATCACAGCCATTTTGACTAG.....................	21	5	17.60	2.60	12.80	0.40	1.80
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	5	16.00	15.20	0.60	0.20	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	5	15.80	15.40	0.20	0.20	0.00
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	5	15.40	15.20	0.20	0.00	0.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	5	15.40	15.40	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	5	14.80	14.60	0.00	0.20	0.00
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	5	14.20	12.80	1.20	0.20	0.00
............................................................................................................TATCACAGCCATTTTGACGAGGT...................	23	5	14.00	14.00	0.00	0.00	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	5	13.20	13.20	0.00	0.00	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	5	13.20	13.20	0.00	0.00	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGT....................	22	5	13.20	13.20	0.00	0.00	0.00
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	5	13.00	12.60	0.40	0.00	0.00
...............................................................ACGCGTCAAAATGACTGTGAGCT................................................................	23	2	31.00	0.00	4.00	0.00	27.00
.................................................................GCGTCAAAATGACTGTGAGCTATG.............................................................	24	2	30.50	19.50	4.50	1.50	5.00
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	5	11.80	11.20	0.40	0.00	0.20
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	5	11.80	4.60	3.80	1.80	1.60
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	5	11.80	11.80	0.00	0.00	0.00
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	5	11.40	9.60	1.20	0.20	0.40
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	5	10.80	10.80	0.00	0.00	0.00
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	5	10.20	8.40	1.80	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	5	10.00	9.40	0.40	0.00	0.20
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	5	9.40	9.20	0.20	0.00	0.00
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	5	9.20	7.60	1.60	0.00	0.00
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	5	9.20	9.20	0.00	0.00	0.00
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	5	9.20	8.20	0.80	0.00	0.20
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	5	9.00	6.20	2.00	0.20	0.60
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	5	9.00	8.60	0.20	0.00	0.20
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	5	8.60	8.20	0.20	0.20	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	5	8.60	6.60	1.00	0.40	0.60
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	5	8.20	6.60	1.20	0.00	0.40
............................................................................................................TATCACAGCCATTTTGACGG......................	20	5	8.00	0.00	6.80	0.60	0.60
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	5	7.80	7.80	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTTG.................	25	3	13.00	8.67	1.00	0.00	3.33
............................................................................................................TATCACAGCCATTTTGACGTGTT...................	23	5	7.60	7.60	0.00	0.00	0.00
............................................................................................................TATCACAGCCCTTTTGACGAG.....................	21	5	7.40	7.40	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	5	7.00	4.00	1.20	0.00	1.80
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	5	6.80	6.20	0.40	0.00	0.20
............................................................................................................TAACACAGCCATTTTGACGAGT....................	22	5	6.60	6.40	0.00	0.00	0.20
............................................................................................................TATCACAGACATTTTGATGAGTT...................	23	5	6.60	6.60	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	5	6.60	5.80	0.40	0.00	0.40
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	5	6.40	5.80	0.60	0.00	0.00
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	5	6.40	4.00	1.60	0.20	0.60
............................................................................................................TATCACAGCCATTTTGCTGAGTT...................	23	5	6.40	6.40	0.00	0.00	0.00
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	5	6.20	6.20	0.00	0.00	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGTT...................	24	5	6.20	6.00	0.20	0.00	0.00
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	5	6.20	6.20	0.00	0.00	0.00
............................................................................................................TATCACAGCCCTTTTGCCGAGT....................	22	3	10.33	10.33	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	5	6.00	5.40	0.20	0.00	0.40
.............................................................................................................ATCACAGCCATTTTGACGAGTT...................	22	5	6.00	5.20	0.40	0.00	0.40
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	5	6.00	5.60	0.20	0.00	0.20
............................................................................................................TATCACAGCCAGTTTGACGAGG....................	22	3	10.00	10.00	0.00	0.00	0.00
............................................................................................................TATCACAGCCCTTTTGATGAGTT...................	23	5	6.00	6.00	0.00	0.00	0.00
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	5	6.00	5.20	0.40	0.00	0.40
............................................................................................................TATCACAGCCTTTTTGACGAGT....................	22	5	5.80	5.80	0.00	0.00	0.00
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	5	5.80	5.40	0.20	0.00	0.20
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	5	5.80	4.80	0.40	0.20	0.40
............................................................................................................TATCACAGCCCTTTTGACGCGT....................	22	3	9.33	9.33	0.00	0.00	0.00
............................................................................................................TACCACAGCCATTTTGACGAGTT...................	23	5	5.40	4.40	0.60	0.00	0.40
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	5	5.40	3.60	1.00	0.00	0.80
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	5	5.40	2.80	1.20	0.00	1.40
............................................................................................................TATCACAGTCATTTTGACGAGTT...................	23	5	5.40	5.20	0.20	0.00	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGTT...................	23	5	5.20	5.00	0.00	0.00	0.20
............................................................................................................TATCACAGCCATTTTGACGAGTAA..................	24	3	8.67	6.67	0.33	0.33	1.33
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	5	5.20	4.60	0.60	0.00	0.00
............................................................................................................TATCACAGCCATGTTGACGAGT....................	22	5	5.20	5.20	0.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGATGA......................	20	5	5.20	0.00	5.20	0.00	0.00
............................................................................................................TATCACAGACATTTTGACGAG.....................	21	5	5.00	4.80	0.20	0.00	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGTT...................	23	5	5.00	4.80	0.00	0.00	0.20
............................................................................................................TATCACAGCCATTTTGAAGAGTT...................	23	5	4.80	4.60	0.00	0.20	0.00
............................................................................................................TATCACAGGCATTTTGACGAGT....................	22	5	4.60	4.40	0.20	0.00	0.00
............................................................................................................TCTCACAGCCATTTTGACGAGT....................	22	5	4.60	4.60	0.00	0.00	0.00
............................................................................................................TATCACAGCCGTTTTGACGAGTT...................	23	5	4.60	4.40	0.20	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTC..................	24	5	4.60	3.60	0.40	0.00	0.60

droSec1

CCTGC-C---T------------------------------CTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCCAGC-CT	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	5	50237.00	5085.20	14813.60	30338.20
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	5	21215.40	6137.20	8072.40	7005.80
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	5	9084.40	109.20	6701.40	2273.80
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	5	2628.20	140.40	264.00	2223.80
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	5	1218.00	20.80	288.60	908.60
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	5	1172.20	632.00	102.20	438.00
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	5	956.40	84.20	773.20	99.00
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	3	701.33	31.00	623.00	47.33
................................................................................................................ACAGCCATTTTGACGAGT....................	18	5	272.60	3.00	102.40	167.20
............................................................................................................TATCACAGCCATTTTGACGA......................	20	5	194.00	5.60	11.20	177.20
.................................................................GCGTCAAAATGACTGTGAGCTATG.............................................................	24	2	376.00	82.00	252.50	41.50
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	5	124.60	12.80	6.80	105.00
............................................................................................................TATCACAGCCAxTTTGACGAGT....................	21	5	121.20	5.00	85.80	30.40
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	5	108.00	2.80	9.60	95.60
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	5	105.60	30.20	18.40	57.00
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	5	104.00	34.40	10.80	58.80
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	5	89.20	10.00	28.00	51.20
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	5	77.20	41.60	6.80	28.80
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	5	76.80	3.00	41.40	32.40
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	5	67.80	2.20	54.40	11.20
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	5	66.00	5.60	26.20	34.20
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	5	65.60	6.80	12.40	46.40
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	5	63.80	10.60	10.40	42.80
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	5	62.40	15.00	18.20	29.20
............................................................................................................TATCACAGCCATTTTGACAAGTT...................	23	5	62.00	45.80	5.80	10.40
............................................................................................................TATCACAGCCATTTTGACG.......................	19	5	58.80	0.20	1.60	57.00
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	5	58.00	0.00	44.60	13.40
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	5	57.60	3.20	8.60	45.80
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	5	55.80	4.60	21.40	29.80
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	5	54.80	3.40	19.40	32.00
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	5	54.40	5.00	21.20	28.20
............................................................................................................TATCACAGCCATTTTGACCAGTT...................	23	5	53.40	45.80	2.20	5.40
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	5	52.00	0.60	7.60	43.80
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	5	51.40	1.40	16.40	33.60
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	5	51.20	2.20	32.20	16.80
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	5	51.00	2.20	34.40	14.40
............................................................................................................TATCACAGCCAxTTTGACGAGTT...................	22	5	47.80	4.80	36.60	6.40
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	5	46.20	6.20	18.80	21.20
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	5	46.00	4.60	15.00	26.40
............................................................................................................TATTACAGCCATTTTGACGAGTT...................	23	5	45.00	2.40	38.80	3.80
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	5	44.40	4.60	19.80	20.00
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	5	43.20	4.00	17.20	22.00
..............................................................................................................TATCAGCCATTTTGACGAGT....................	20	3	71.33	4.33	47.33	19.67
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	5	42.20	5.20	12.20	24.80
............................................................................................................TATCACAGCCAxxTTGACGAGT....................	20	3	70.33	4.33	49.33	16.67
............................................................................................................TATCACAGCTATTTTGACGAGTT...................	23	5	41.80	1.80	36.60	3.40
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	5	41.00	6.40	18.00	16.60
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	5	38.80	29.20	3.00	6.60
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	5	38.20	4.20	12.60	21.40
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	5	38.00	3.60	14.40	20.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	5	37.00	0.60	1.20	35.20
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	5	37.00	2.40	8.20	26.40
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	5	36.40	2.20	19.00	15.20
............................................................................................................TATCACACCCATTTTGACGAGTT...................	23	5	34.00	7.40	18.60	8.00
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	5	33.80	1.80	2.60	29.40
.............................................................................................................ATCACAGCCATTTTGACGAGT....................	21	5	32.20	3.80	4.40	24.00
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	5	32.20	1.60	16.20	14.40
.............................................................................................................ATCACAGCCATTTTGACGAGTT...................	22	5	31.80	7.80	13.00	11.00
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	5	31.60	4.80	7.20	19.60
.................................................................GCGTCAAAATGACTGTGAGCTAT..............................................................	23	2	78.00	24.50	44.50	9.00
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	5	30.40	6.20	11.60	12.60
..............................................................................................................TCACAGCCATTTTGACGAGT....................	20	5	29.40	0.80	18.00	10.60
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	5	29.20	3.80	10.00	15.40
............................................................................................................TATCACATCCATTTTGACGAGTT...................	23	5	28.80	8.80	8.80	11.20
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	5	28.40	2.40	3.80	22.20
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	5	28.40	0.00	24.00	4.40
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	5	27.20	1.60	10.80	14.80
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	5	27.00	7.80	12.80	6.40
............................................................................................................TATCACAGCCAxTTTGATGAGTT...................	22	5	26.00	0.00	23.40	2.60
............................................................................................................AATCACAGCCATTTTGACGAGT....................	22	5	25.20	0.40	3.00	21.80
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	5	25.00	8.80	10.80	5.40
............................................................................................................TATCATAGCCATTTTGACGAGTT...................	23	5	25.00	2.40	19.00	3.60
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	5	24.80	1.00	6.00	17.80
..............................................................................................................TATCAGCCATTTTGACGAGTT...................	21	3	40.33	2.33	35.00	3.00
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	5	24.00	1.60	9.40	13.00
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	5	23.80	1.00	7.80	15.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	5	23.80	1.60	3.20	19.00
............................................................................................................TATCACAGCCATTTTGACGAGTAA..................	24	3	39.00	10.67	20.67	7.67
............................................................................................................TATCACGGCCATTTTGACGAGTT...................	23	5	22.80	3.80	12.40	6.60
............................................................................................................TATCACAGCCATTTTGACGGGTT...................	23	5	22.80	4.40	11.60	6.80
...........................................................................................................CTATCACAGCCATTTTGACGAGTT...................	24	5	22.40	3.60	10.80	8.00
............................................................................................................TATTACAGCCATTTTGATGAGTT...................	23	5	22.40	0.00	21.40	1.00
............................................................................................................TATCACGGCCATTTTGATGAGTT...................	23	5	22.20	0.60	11.80	9.80
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	5	22.00	2.80	5.80	13.40
............................................................................................................TACCACAGCCATTTTGACGAGTT...................	23	5	21.80	7.40	8.60	5.80
............................................................................................................TATCACAGCCATTTCGACGAGTT...................	23	5	21.80	4.80	12.60	4.40
............................................................................................................TATCACAGCCATTTTGACGAAT....................	22	5	21.40	1.40	2.80	17.20
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	5	21.20	0.80	7.40	13.00
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	5	21.20	7.40	5.60	8.20
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	5	20.00	2.60	6.40	11.00
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	5	20.00	5.20	8.40	6.40
............................................................................................................TATCACAGCCATTTTGACGAGTTTG.................	25	3	33.00	8.33	15.33	9.33
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	5	19.60	6.80	6.20	6.60
............................................................................................................TATCACAACCATTTTGACGAGTT...................	23	5	19.40	3.20	4.60	11.60
............................................................................................................TATCACAGCCACTTTGACGAGTT...................	23	5	19.20	3.80	9.40	6.00
............................................................................................................TATCGCAGCCATTTTGACGAGTT...................	23	5	19.00	4.40	10.20	4.40
............................................................................................................CATCACAGCCATTTTGACGAGTT...................	23	5	18.20	4.60	7.00	6.60
............................................................................................................TATCACAGCCATTTTGACGAGTTC..................	24	5	18.00	4.40	5.20	8.40
............................................................................................................TATCACTGCCATTTTGACGAGT....................	22	5	17.00	0.80	9.60	6.60
............................................................................................................TATCACAGCCATCTTGACGAGTT...................	23	5	17.00	3.00	8.80	5.20
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	5	16.80	3.20	5.00	8.60

droYak2

CTTAC-C---C------------------------------CTG---------CTGTCTAGTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGCTG-GCCAGTC-----T	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	7	11436.71	4781.71	2074.43	946.00	3476.00	158.57
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	7	5823.43	1843.57	902.14	1401.29	1632.43	44.00
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	7	2158.43	946.14	314.14	47.71	844.14	6.29
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	7	552.29	280.00	55.29	27.14	92.71	97.14
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	7	391.71	77.29	86.86	11.00	211.00	5.57
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	7	228.86	32.00	39.14	87.86	68.86	1.00
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	7	153.29	122.57	6.14	11.00	13.29	0.29
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	7	148.14	29.71	22.29	0.71	95.14	0.29
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	7	129.71	47.71	27.86	2.29	51.86	0.00
................................................................................................................ACAGCCATTTTGACGAGT....................	18	7	113.57	48.43	24.00	0.86	40.14	0.14
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	7	83.57	16.29	11.86	1.57	53.57	0.29
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	7	62.57	19.57	11.43	4.43	27.14	0.00
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	7	58.43	7.71	4.43	0.57	45.57	0.14
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	5	81.00	73.80	0.80	4.80	1.60	0.00
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	7	45.71	8.14	3.71	2.57	21.71	9.57
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	7	44.86	17.86	7.43	2.86	16.71	0.00
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	7	41.29	9.71	3.71	0.57	12.29	15.00
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	7	36.57	5.29	16.71	0.14	14.14	0.29
............................................................................................................TATCACAGCCATTTTGACG.......................	19	7	33.71	0.71	1.86	0.00	1.86	29.29
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	7	31.71	4.14	8.71	0.14	18.57	0.14
.................................................................GCGTCAAAATGACTGTGAGCTATG.............................................................	24	2	109.50	24.50	15.50	35.50	34.00	0.00
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	7	31.14	6.00	1.29	0.29	23.57	0.00
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	7	30.00	4.14	10.14	1.14	14.29	0.29
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	7	29.14	8.86	4.43	0.43	15.43	0.00
............................................................................................................TATCACAGCCATTTTGACGA......................	20	7	28.71	7.14	4.29	2.86	10.43	4.00
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	7	27.86	1.71	6.86	0.00	19.29	0.00
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	7	27.43	2.57	4.29	0.57	10.00	10.00
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	7	27.29	4.43	1.71	1.86	19.14	0.14
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	7	26.57	5.00	5.29	1.43	14.86	0.00
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	7	25.57	7.57	4.57	2.14	11.29	0.00
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	7	24.00	15.43	2.43	0.57	5.57	0.00
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	7	22.00	8.29	4.57	0.43	8.43	0.29
............................................................................................................TATCACAGCCATTTTGCTGAGTT...................	23	7	21.71	4.29	2.57	0.00	14.86	0.00
............................................................................................................TATCACAGCCATTTTGACGTGTT...................	23	7	20.86	3.43	0.57	0.14	16.71	0.00
............................................................................................................TATCACAGCCATTTTGATGCGTT...................	23	7	19.71	4.00	1.71	0.00	14.00	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGT....................	22	7	19.71	6.57	2.86	0.14	10.14	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	7	19.14	9.14	2.43	0.57	6.86	0.14
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	7	18.71	1.71	7.43	0.29	9.29	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	7	18.00	4.86	1.86	0.00	11.29	0.00
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	7	17.86	4.14	3.71	1.57	7.57	0.86
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	7	16.57	5.43	2.57	0.86	7.71	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	7	16.29	5.57	4.57	2.57	3.29	0.29
............................................................................................................TATCACAGCCCTTTTGATGAGTT...................	23	7	15.71	6.43	1.57	0.00	7.71	0.00
............................................................................................................TATCACAGCCCTTTTGACGCGT....................	22	5	21.40	3.60	2.60	0.00	15.20	0.00
............................................................................................................TAGCACAGCCATTTTGACGAGTT...................	23	7	15.29	1.57	3.71	0.00	10.00	0.00
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	7	14.86	1.14	4.43	0.43	8.43	0.43
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	7	14.86	3.43	5.00	0.43	6.00	0.00
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	7	14.71	6.00	2.57	0.29	5.71	0.14
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	7	14.71	0.86	3.29	1.43	9.14	0.00
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	7	14.57	6.29	3.29	0.43	4.57	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	7	14.29	7.43	2.71	0.43	3.71	0.00
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	7	14.00	5.43	3.00	1.00	4.57	0.00
............................................................................................................TATCACAGCCGTTTTGACGAGTT...................	23	7	13.29	4.14	1.43	1.57	6.14	0.00
............................................................................................................TATCACAGCCATTTTGACGAGGT...................	23	7	13.14	6.14	3.43	0.29	3.29	0.00
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	7	13.00	6.14	2.29	0.00	4.57	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	7	12.43	2.57	1.57	1.43	6.00	0.86
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	7	12.29	4.00	2.71	0.57	5.00	0.00
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	7	11.57	4.29	2.71	0.29	4.29	0.00
.............................................................................................................ATCACAGCCATTTTGACGAGTT...................	22	7	11.43	4.71	1.14	1.57	4.00	0.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	7	11.43	5.29	2.14	0.43	3.57	0.00
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	7	11.29	5.00	3.29	0.29	2.57	0.14
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	7	11.14	7.71	1.14	0.57	1.71	0.00
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	7	11.00	4.43	2.00	0.43	4.14	0.00
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	7	10.71	5.00	2.00	0.00	3.57	0.14
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	7	10.29	0.86	3.14	1.86	4.29	0.14
............................................................................................................TATCACAGCCTTTTTGACGAGT....................	22	7	10.14	3.14	0.57	0.00	6.43	0.00
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	7	10.14	3.86	2.71	0.57	2.86	0.14
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	7	10.14	3.43	2.86	0.57	3.14	0.14
............................................................................................................TATCACCGCCATTTTGACGAGT....................	22	7	10.00	2.00	1.29	0.57	5.86	0.29
............................................................................................................TATCACAGCCATTTTGCCGCGT....................	22	5	13.80	1.20	1.60	0.00	11.00	0.00
............................................................................................................TATCACAGCCATTTTGATGATTT...................	23	7	9.71	0.71	1.00	0.29	7.71	0.00
............................................................................................................TATCACAGCCATTTTGATTAGTT...................	23	7	9.71	0.86	4.71	0.00	4.14	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGTT...................	23	7	9.43	2.14	0.57	0.14	6.57	0.00
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	7	9.43	1.00	2.43	0.00	5.86	0.14
............................................................................................................TATCACAGCCATTTTGACGGGTT...................	23	7	9.29	1.86	2.57	0.57	4.29	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	7	9.29	2.86	1.43	1.43	3.43	0.14
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	7	9.14	3.29	1.00	0.71	2.14	2.00
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	7	8.71	3.29	0.71	0.43	4.29	0.00
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	7	8.57	2.00	0.86	1.00	4.57	0.14
............................................................................................................TATCACAGCCATTTTGACGCG.....................	21	7	8.43	3.71	1.00	0.00	3.43	0.29
............................................................................................................TATCACAGCCCTTTTGCCGAGT....................	22	5	11.00	2.20	1.20	0.00	7.60	0.00
............................................................................................................TATCACAGCCCTTTTGACGCGTT...................	23	5	10.20	3.20	0.60	0.00	6.40	0.00
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	7	7.29	3.14	1.57	0.14	2.14	0.29
............................................................................................................TAGCACAGCCATTTTGATGAGTT...................	23	7	7.14	1.00	1.86	0.00	4.29	0.00
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	7	7.00	2.00	1.29	0.14	3.57	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGTT...................	24	7	7.00	2.86	1.29	0.29	2.57	0.00
............................................................................................................TATCACAGCCATTGTGACGAGT....................	22	7	7.00	1.86	1.57	0.14	3.43	0.00
............................................................................................................TATCACAGCCATTTTGACAAGTT...................	23	7	7.00	2.71	2.71	0.29	1.14	0.14
............................................................................................................TACCACAGCCATTTTGACGAGTT...................	23	7	6.86	2.71	0.57	1.43	2.14	0.00
............................................................................................................TATCACAGCCATTTTAACGAGTT...................	23	7	6.86	2.29	2.29	0.29	2.00	0.00
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	7	6.71	2.43	0.71	0.86	2.71	0.00
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	7	6.57	2.71	1.14	0.43	2.29	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	7	6.57	3.14	1.29	0.00	2.14	0.00
............................................................................................................TAGCACAGCCGTTTTGACGAGT....................	22	5	9.20	0.40	4.60	0.00	4.20	0.00
............................................................................................................AATCACAGCCATTTTGACGAGT....................	22	7	6.43	1.14	1.00	0.14	4.00	0.14
............................................................................................................TATCACAGCCATTTTGACGAC.....................	21	7	6.43	0.00	0.14	0.14	0.43	5.71
............................................................................................................TATCACATCCATTTTGACGAGTT...................	23	7	6.43	0.86	1.29	0.86	3.43	0.00
............................................................................................................TATCACAGCCACTTTGACGAGTT...................	23	7	6.29	2.29	0.86	0.57	2.57	0.00
............................................................................................................TATCACAGACATTTTGATGAGTT...................	23	7	6.29	5.00	0.57	0.00	0.71	0.00
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	7	6.29	2.29	1.00	0.14	2.86	0.00
............................................................................................................TATCACAGCCATTTTGATGTGTT...................	23	7	6.29	1.43	0.14	0.00	4.71	0.00

droEre2

TTTAA-ACCCC------------------------------CTG---------CTGTCTATTAGCGCGTCAAAGTGACTGTGAACTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGCC-----C	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	9	33580.44	2098.56	861.56	0.00	30620.33
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	9	5402.11	588.89	305.89	0.00	4507.33
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	9	2850.78	448.44	470.33	0.00	1932.00
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	9	2235.44	125.00	33.56	0.00	2076.89
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	9	1222.67	61.67	150.00	0.00	1011.00
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	9	383.44	11.11	1.00	0.00	371.33
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	9	374.78	25.22	5.56	0.00	344.00
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	9	320.78	0.78	0.56	0.00	319.44
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	9	303.00	7.89	11.67	0.00	283.44
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	9	286.78	35.00	4.11	0.00	247.67
............................................................................................................TATCACAGCCATTTTGACGA......................	20	9	161.22	6.78	1.89	0.00	152.56
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	9	143.89	1.33	1.00	0.00	141.56
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	9	129.78	3.22	1.00	0.00	125.56
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	9	106.78	2.11	8.00	0.00	96.67
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	9	88.11	1.89	0.11	0.00	86.11
................................................................................................................ACAGCCATTTTGACGAGT....................	18	11	69.09	17.27	7.82	0.00	44.00
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	9	72.78	6.67	2.78	0.00	63.33
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	9	62.44	29.33	2.44	0.00	30.67
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	9	61.44	2.89	1.11	0.00	57.44
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	9	59.22	11.22	4.33	0.00	43.67
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	9	58.89	1.22	1.44	0.00	56.22
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	9	58.56	2.89	1.67	0.00	54.00
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	9	58.11	17.89	4.67	0.00	35.56
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	9	57.78	2.00	0.78	0.00	55.00
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	9	57.44	7.56	1.56	0.00	48.33
............................................................................................................TATCACATCCATTTTGACGAGTT...................	23	9	56.67	3.11	0.33	0.00	53.22
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	9	54.89	19.44	12.67	0.00	22.78
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	9	49.89	11.56	1.89	0.00	36.44
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	9	47.89	4.78	1.11	0.00	42.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	9	47.22	0.89	0.78	0.00	45.56
............................................................................................................TATCACAGCAATTTTGACGAGTT...................	23	9	45.78	0.11	0.11	0.00	45.56
............................................................................................................TATCACAGCCAxTTTGACGAGT....................	21	9	40.56	0.33	0.44	0.00	39.78
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	9	38.44	5.00	5.67	0.00	27.78
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	9	38.00	10.11	0.44	0.00	27.44
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	9	37.33	3.67	0.44	0.00	33.22
............................................................................................................TAACACAGCCATTTTGACGAGT....................	22	9	36.89	1.22	0.11	0.00	35.56
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	9	35.22	2.78	1.44	0.00	31.00
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	9	33.78	2.56	0.67	0.00	30.56
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	9	33.44	2.89	0.89	0.00	29.67
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	9	33.33	5.78	0.56	0.00	27.00
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	9	33.00	2.11	1.22	0.00	29.67
............................................................................................................TATCACAGCCATTTTGATTAGTT...................	23	9	33.00	10.00	4.00	0.00	19.00
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	9	30.89	2.89	1.44	0.00	26.56
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	9	30.78	2.00	0.67	0.00	28.11
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	9	30.67	2.89	0.78	0.00	27.00
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	9	29.11	1.89	1.00	0.00	26.22
............................................................................................................TATCACATCCATTTTGATGAGTT...................	23	9	29.00	2.89	0.33	0.00	25.78
............................................................................................................TATCACATCCATTTTGACGAG.....................	21	9	27.89	1.00	0.11	0.00	26.78
............................................................................................................TATCACAGCCATTTTGACTAG.....................	21	9	27.78	2.44	0.67	0.00	24.67
.............................................................................................................ATCACAGCCATTTTGACGAGT....................	21	9	27.67	0.89	0.67	0.00	26.11
............................................................................................................TATCACAGCCATTTTGACGAGTG...................	23	9	27.56	0.67	0.33	0.00	26.56
............................................................................................................TATCACAGCCATTTTGACG.......................	19	9	27.22	0.22	0.44	0.00	26.56
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	9	26.22	6.78	0.89	0.00	18.56
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	9	25.78	5.00	0.22	0.00	20.56
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	9	25.44	2.11	0.67	0.00	22.67
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	9	24.67	3.44	0.33	0.00	20.89
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	9	24.56	2.89	1.78	0.00	19.89
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	9	24.44	2.22	1.67	0.00	20.56
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	9	24.11	3.56	0.33	0.00	20.22
............................................................................................................TATGACAGCCATTTTGACGAGT....................	22	9	23.67	0.56	0.33	0.00	22.78
............................................................................................................TATAACAGCCATTTTGACGAGTT...................	23	9	22.78	0.44	0.22	0.00	22.11
............................................................................................................TATCACAGCAATTTTGACGAG.....................	21	9	22.44	0.22	0.00	0.00	22.22
............................................................................................................TATCACAGCCATTTTGATGAGTC...................	23	9	22.33	0.22	0.89	0.00	21.22
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	9	21.89	0.78	0.56	0.00	20.56
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	9	21.67	1.56	0.00	0.00	20.11
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	9	21.44	1.22	1.00	0.00	19.22
............................................................................................................TATCACAGCCATTTTTACGAG.....................	21	9	20.33	3.22	0.22	0.00	16.89
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	9	20.33	3.67	1.11	0.00	15.56
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	9	20.00	3.22	1.78	0.00	15.00
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	9	19.78	1.00	5.22	0.00	13.56
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	9	19.11	1.78	0.44	0.00	16.89
............................................................................................................TATCACAGCCAxxTTGACGAGT....................	20	7	23.86	0.00	0.14	0.00	23.71
..............................................................................................................TCACAGCCATTTTGACGAGT....................	20	9	18.00	1.89	0.11	0.00	16.00
............................................................................................................TATCACAGCCATTTTGATGAGTA...................	23	9	18.00	0.00	0.22	0.00	17.78
............................................................................................................TATCACAGCAATTTTGATGAGTT...................	23	9	17.89	0.33	0.33	0.00	17.22
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	9	17.44	5.22	0.44	0.00	11.78
............................................................................................................TATCACATCCATTTTGATGAGT....................	22	9	17.11	0.22	0.11	0.00	16.78
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	9	16.78	1.89	0.56	0.00	14.33
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	11	13.55	3.73	3.27	0.00	6.55
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	9	16.11	1.33	0.78	0.00	14.00
............................................................................................................TATCACAGCCATTTTGACGAAT....................	22	9	15.89	2.56	0.67	0.00	12.67
............................................................................................................TATCACAGCCATTTTTATGAGTT...................	23	9	15.89	7.22	1.22	0.00	7.44
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	11	12.91	4.00	4.27	0.00	4.64
............................................................................................................TATCACGGCCATTTTGATGAGTT...................	23	9	15.78	0.78	2.00	0.00	13.00
............................................................................................................TATCACCGCCATTTTGACGAGT....................	22	9	15.67	1.56	0.78	0.00	13.33
............................................................................................................TATCACAGCCATTTTGATTAGT....................	22	9	15.56	2.11	1.22	0.00	12.22
............................................................................................................TCTCACAGCCATTTTGACGAGT....................	22	9	14.89	2.33	0.22	0.00	12.33
............................................................................................................TATCACAGCCATTTTGATGATTT...................	23	9	14.33	4.67	3.78	0.00	5.89
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	9	13.78	0.56	0.22	0.00	13.00
............................................................................................................TATCACAGCCATTTTGAAGAGTT...................	23	9	13.56	0.44	0.33	0.00	12.78
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	9	13.56	5.11	5.22	0.00	3.22
..............................................................................................................TATCAGCCATTTTGACGAGT....................	20	7	16.86	0.00	0.00	0.00	16.86
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	9	13.00	3.33	0.22	0.00	9.44
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	9	12.56	3.56	2.56	0.00	6.44
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	7	16.14	11.57	0.43	0.00	4.14
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	9	12.11	5.00	0.89	0.00	6.22
............................................................................................................TATCACAGCAATTTTGATGAGT....................	22	9	11.22	0.11	0.00	0.00	11.11
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	9	11.11	2.89	0.89	0.00	7.33
............................................................................................................TATCACATCCATTTTGACTAGT....................	22	7	13.86	1.29	0.00	0.00	12.57
............................................................................................................TATCACAGCCATTTTGACGAT.....................	21	9	10.78	1.67	0.33	0.00	8.78
............................................................................................................TATCACAGACATTTTGATGAGTT...................	23	9	10.33	0.78	0.33	0.00	9.22

droEug1

CTTAC-C---T------------------------------TTG---------CTGTCTATTAACGCGTTAAAATGACTGTGAGCTATGT----TGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGGCAC--AT

Size

Hit Count

Total Norm

droBia1

T--AC-T---T------------------------------CTG---------CTGTCTATCAGCGCGTCAAAATGACTGTGAGCTATGT----GCATTTAA-CCTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCATGCGC--AT

Size

Hit Count

Total Norm

droTak1

TTTATAC---C------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GCCAGTCGCA-TT

Size

Hit Count

Total Norm

droEle1

TCTGC-T---A------------------------------CTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAACTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGGTG-GGCAGGCAC--AT

Size

Hit Count

Total Norm

droRho1

TTCAG-C---T------------------------------TTG---------CTGTCTATTAACGCGTCAAAATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGTTG-GGCAGGCA-----

Size

Hit Count

Total Norm

droFic1

TCCATCA---T------------------------------CTG---------CTGTCTTTCAAAGCGTCAAGATGACTGTGAGCTATGT----GGATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGGCG-GACAGCC-----T

Size

Hit Count

Total Norm

droKik1

TCTCC-TCCAC------------------CTGTGCT-----TTG---------CTGTCTATCAACGCGTCAAAATGACTGTGAGCTATGTT---GAATTTGA-CTTCATATCACAGCCATTTTGACGAGTTTGATG-GACAGACTC--AT

Size

Hit Count

Total Norm

droAna3

TGTCC-CGCTT------------------------------CTGCTTCATTACCTGTTTCCCAGCGCGTCGAAATGACTGTGACTTATGC----GTATTTGA-TGTCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGTGAAA-GT	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	6	59771.00	1671.67	53117.50	3713.83	1268.00
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	6	8738.67	1852.83	4733.17	1560.33	592.33
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	6	3866.50	43.67	3629.50	84.00	109.33
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	6	2509.33	62.50	1631.33	735.83	79.67
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	6	1507.00	425.00	871.67	191.67	18.67
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	6	1144.50	17.33	903.17	208.50	15.50
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	6	1035.17	16.67	1003.83	6.50	8.17
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	6	516.17	10.67	486.17	16.83	2.50
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	6	443.00	0.00	414.17	26.50	2.33
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	6	425.67	6.67	392.17	11.00	15.83
............................................................................................................TATCACAGCCATTTTGACGA......................	20	6	425.00	4.17	399.83	13.00	8.00
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	6	249.33	4.50	205.00	15.83	24.00
............................................................................................................TATCACAGCCATTTTGACGAAT....................	22	6	223.67	13.83	208.50	1.00	0.33
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	6	188.67	15.67	33.33	15.33	124.33
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	6	181.00	8.00	162.00	7.17	3.83
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	6	163.67	6.83	139.17	8.17	9.50
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	6	157.33	2.17	144.50	10.17	0.50
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	6	133.83	2.83	86.33	38.33	6.33
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	6	117.50	0.83	102.00	9.67	5.00
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	6	113.00	1.50	98.83	12.33	0.33
............................................................................................................TATCACATCCATTTTGACGAGTT...................	23	6	111.17	18.50	88.00	2.67	2.00
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	6	94.83	3.83	81.67	8.83	0.50
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	3	170.33	3.67	2.67	2.67	161.33
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	6	82.00	5.17	68.17	6.83	1.83
............................................................................................................TATCACAGCCATTTTGACG.......................	19	6	77.67	0.17	73.50	2.83	1.17
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	6	75.17	1.33	66.50	6.33	1.00
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	6	74.17	2.67	65.00	5.17	1.33
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	6	71.67	1.33	62.83	5.67	1.83
............................................................................................................TATCACAGCCAxTTTGACGAGT....................	21	6	69.33	1.17	66.50	1.17	0.50
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	6	69.00	1.33	56.00	6.33	5.33
............................................................................................................TATCACATCCATTTTGACGAG.....................	21	6	67.17	0.33	66.50	0.00	0.33
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	6	66.33	6.67	50.67	6.33	2.67
................................................................................................................ACAGCCATTTTGACGAGT....................	18	6	65.83	0.00	13.83	40.17	11.83
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	6	65.50	5.00	32.50	26.83	1.17
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	6	65.33	0.83	54.67	6.50	3.33
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	6	62.83	4.00	41.33	15.67	1.83
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	6	62.33	2.67	28.50	18.00	13.17
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	6	60.83	0.67	51.00	7.83	1.33
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	6	60.17	12.67	38.00	8.00	1.50
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	6	59.67	0.83	10.33	33.17	15.33
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	6	59.50	1.33	49.50	5.33	3.33
............................................................................................................TATCACAGCCATTTTGACGAT.....................	21	6	58.83	0.67	57.17	0.33	0.67
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	6	56.83	1.33	50.33	3.33	1.83
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	6	56.00	1.33	47.33	4.33	3.00
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	6	53.50	2.17	41.50	6.67	3.17
............................................................................................................TATCACATCCATTTTGATGAGTT...................	23	6	50.17	0.50	46.17	2.50	1.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	6	49.00	1.50	42.83	3.50	1.17
............................................................................................................TAGCACAGCCATTTTGACGAGTT...................	23	6	49.00	0.00	37.00	11.17	0.83
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	6	48.17	1.00	41.33	5.00	0.83
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	6	47.50	5.00	22.00	6.33	14.17
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	6	44.67	4.67	29.00	4.00	7.00
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	6	43.67	0.17	26.67	12.00	4.83
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	6	42.50	1.00	37.50	3.67	0.33
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	6	39.67	0.67	11.17	24.83	3.00
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	6	39.50	4.50	17.67	12.17	5.17
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	6	39.33	1.17	31.00	6.17	1.00
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	6	39.00	5.17	26.00	6.17	1.67
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	6	38.83	0.83	10.00	24.17	3.83
............................................................................................................TATCACATCCATTTTGACTAGT....................	22	3	75.00	0.67	72.33	1.00	1.00
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	6	37.17	3.33	28.00	4.33	1.50
............................................................................................................TATCACAGCCATTTTGACTAG.....................	21	6	36.50	0.00	35.17	0.67	0.67
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	6	35.83	0.83	31.67	2.17	1.17
.............................................................................................................ATCACAGCCATTTTGACGAGT....................	21	6	35.33	1.17	31.33	1.67	1.17
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	6	35.00	7.67	21.17	3.00	3.17
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	6	33.00	1.67	24.00	4.83	2.50
............................................................................................................TATCACAGCCATTTTGACGACTT...................	23	6	32.67	14.00	15.00	2.17	1.50
............................................................................................................TATCACAGCCATTTTGACGAATT...................	23	6	31.83	12.17	18.17	0.50	1.00
............................................................................................................TATCACAGACATTTTGACGAG.....................	21	6	31.67	0.17	30.17	1.33	0.00
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	6	31.50	0.67	22.17	4.83	3.83
............................................................................................................TAGCACAGCCATTTTGACGAG.....................	21	6	31.00	0.00	30.00	1.00	0.00
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	6	29.83	1.17	1.83	20.00	6.83
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	6	29.83	0.00	21.83	7.50	0.50
............................................................................................................TATCACAGCCAxxTTGACGAGT....................	20	3	59.00	2.33	56.33	0.33	0.00
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	6	29.33	0.33	23.83	3.33	1.83
............................................................................................................TATCACAGCCAGTTTGACGAGT....................	22	6	27.33	7.83	1.83	16.00	1.67
............................................................................................................TATCACATCCATTTTGATGAGT....................	22	6	25.33	0.17	25.00	0.17	0.00
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	6	25.17	1.83	6.50	11.50	5.33
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	6	23.83	0.50	1.33	16.50	5.50
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	6	23.50	2.00	17.00	3.33	1.17
............................................................................................................TATCACATCCATTTTGACGAGTTT..................	24	6	23.33	3.17	19.83	0.33	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	6	23.00	0.17	17.50	4.00	1.33
..............................................................................................................TCACAGCCATTTTGACGAGT....................	20	6	22.00	1.00	19.17	1.50	0.33
............................................................................................................TATCACAGCAATTTTGACGAGTT...................	23	6	21.00	3.50	10.83	6.50	0.17
............................................................................................................TATCACAGCCATTTTGACGAGTTTT.................	25	6	20.33	6.83	7.83	5.50	0.17
............................................................................................................TATCACAGCCATTTTGACGAA.....................	21	6	20.33	0.17	18.83	1.17	0.17
............................................................................................................TATCACATCCATTTTTACGAGT....................	22	3	39.67	0.67	36.33	0.67	2.00
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	6	19.17	0.17	7.33	10.17	1.50
............................................................................................................TATCACAGCCACTTTGACGAGTT...................	23	6	17.83	6.67	6.00	4.17	1.00
............................................................................................................TAGCACAGCCATTTTGATGAGTT...................	23	6	17.83	0.00	11.83	5.83	0.17
..............................................................................................................TATCAGCCATTTTGACGAGT....................	20	3	35.33	4.00	31.33	0.00	0.00
............................................................................................................TCTCACAGCCATTTTGACGAGT....................	22	6	17.50	2.17	12.00	2.17	1.17
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	6	17.33	3.50	1.83	7.00	5.00
............................................................................................................TATCACAGACATTTTGATGAGTT...................	23	6	17.33	0.33	13.83	2.83	0.33
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	6	17.00	0.67	1.67	12.67	2.00
............................................................................................................TATAACAGCCATTTTGACGAGTT...................	23	6	16.83	4.50	7.17	4.17	1.00
............................................................................................................AATCACAGCCATTTTGACGAGT....................	22	6	16.33	0.50	9.00	6.00	0.83
............................................................................................................TATCACAGCCATATTGACGAGT....................	22	6	16.33	7.83	7.33	0.83	0.33
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	6	16.00	0.50	11.00	3.83	0.67
............................................................................................................TATCACAGCCAGTTTGACGAGTT...................	23	6	15.50	10.00	0.67	4.50	0.33
............................................................................................................TATCACCGCCATTTTGACGAGT....................	22	6	15.17	1.50	9.17	2.67	1.83
............................................................................................................TATCACAGCCATTTTTACGAG.....................	21	6	14.83	0.17	11.67	0.67	2.33

droBip1

GCTAA-T---C------------------------------TTG---------CTGTTTCCCAACGCGTCGAAATGACTGTGACTTATGC----GTATTTGA-TGCCATATCACAGCCATTTTGACGAGTTTGGTG-GACAGTCATA-AC

Size

Hit Count

Total Norm

dp4

GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	6	13385.83	2342.00	7238.67	3801.00	4.17
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	6	6412.67	2143.67	2476.67	1787.00	5.33
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	6	2601.83	31.83	1499.50	1070.50	0.00
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	6	750.67	74.17	519.00	155.50	2.00
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	6	641.67	12.17	212.83	416.67	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	6	435.67	323.83	38.50	73.33	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	6	178.17	36.17	127.17	14.83	0.00
................................................................................................................ACAGCCATTTTGACGAGT....................	18	6	125.33	10.67	78.83	35.83	0.00
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	6	68.67	1.00	59.50	8.17	0.00
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	6	67.50	1.17	47.33	19.00	0.00
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	6	60.17	0.83	51.33	8.00	0.00
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	6	54.17	0.83	8.17	45.17	0.00
............................................................................................................TATCACAGCCATTTTGACGA......................	20	6	51.67	5.67	31.83	13.83	0.33
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	6	51.67	10.33	22.00	19.33	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	3	98.67	19.00	75.00	4.67	0.00
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	6	39.33	5.17	11.00	23.17	0.00
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	6	37.83	1.00	30.50	6.33	0.00
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	6	34.67	0.17	15.50	19.00	0.00
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	6	34.67	1.50	13.50	19.67	0.00
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	6	32.33	1.17	6.50	24.67	0.00
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	6	31.67	3.67	17.83	10.00	0.17
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	6	31.33	0.33	24.00	7.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	6	31.00	1.83	19.00	10.17	0.00
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	6	29.00	0.00	15.17	13.83	0.00
.................................................................GCGTCAAAATGACTGTGAGCTATG.............................................................	24	2	79.50	49.50	18.50	11.50	0.00
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	6	25.67	0.17	22.33	3.17	0.00
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	6	25.00	1.00	17.67	6.33	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	6	23.67	2.00	16.33	5.33	0.00
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	6	23.67	2.67	12.83	8.17	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGT....................	22	6	23.17	0.00	15.67	7.50	0.00
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	6	23.00	1.00	18.33	3.67	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	6	22.33	0.33	18.33	3.67	0.00
.............................................................................................................ATCACAGCCATTTTGACGAGTT...................	22	6	21.33	6.50	9.33	5.50	0.00
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	6	20.33	0.67	16.00	3.67	0.00
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	6	19.33	2.83	11.17	5.33	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	6	19.33	4.83	8.17	6.33	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTC..................	24	6	19.33	13.33	1.67	4.33	0.00
............................................................................................................TATCACAGCCATTTTGCTGAGTT...................	23	6	18.67	0.00	8.00	10.67	0.00
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	6	18.17	0.00	12.17	6.00	0.00
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	6	18.00	0.67	8.50	8.83	0.00
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	6	18.00	1.17	7.33	9.50	0.00
............................................................................................................TATCACAGCCATTTTGACGAGGT...................	23	6	17.83	0.00	15.83	2.00	0.00
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	6	17.67	0.50	14.33	2.83	0.00
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	6	17.17	1.83	9.67	5.67	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	6	17.00	1.17	14.33	1.50	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	6	16.83	2.00	10.17	4.67	0.00
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	6	16.50	1.83	11.50	3.17	0.00
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	6	16.00	2.67	7.67	5.50	0.17
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	6	15.50	3.50	8.33	3.67	0.00
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	6	15.33	0.83	10.50	4.00	0.00
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	6	15.17	1.67	10.50	3.00	0.00
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	6	15.17	1.33	4.67	9.17	0.00
............................................................................................................TATCACAGCCATTTTGACGTGTT...................	23	6	15.00	0.50	9.67	4.83	0.00
............................................................................................................TAGCACAGCCATTTTGACGAGTT...................	23	6	14.83	0.00	4.67	10.17	0.00
............................................................................................................TATCACAGACATTTTGATGAGTT...................	23	6	14.17	0.00	12.50	1.67	0.00
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	6	13.83	1.83	6.50	5.50	0.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	6	13.67	0.50	9.50	3.67	0.00
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	6	13.17	1.50	7.83	3.83	0.00
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	6	12.83	0.50	9.50	2.83	0.00
............................................................................................................TATCACAGCCATTTTGATGCGTT...................	23	6	12.50	0.00	6.67	5.83	0.00
............................................................................................................TATCACAGCCTTTTTGACGAGT....................	22	6	12.33	0.17	9.00	3.17	0.00
.............................................................................................................ATCACAGCCATTTTGACGAGT....................	21	6	11.83	3.33	5.17	3.33	0.00
............................................................................................................TAACACAGCCATTTTGACGAGT....................	22	6	11.67	0.17	3.33	8.17	0.00
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	6	11.67	1.83	6.67	3.17	0.00
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	6	11.50	0.83	6.50	4.17	0.00
............................................................................................................TATCACAGCCGTTTTGATGAGTT...................	23	6	11.50	0.67	1.83	9.00	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	6	11.33	2.67	6.17	2.50	0.00
............................................................................................................TATCACGGCCATTTTGATGAGTT...................	23	6	11.17	0.33	1.83	9.00	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGTT...................	24	6	11.17	4.50	3.83	2.83	0.00
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	6	10.67	1.50	7.17	2.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	6	10.33	3.00	3.67	3.50	0.17
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	6	10.17	1.33	5.17	3.67	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGTT...................	23	6	9.67	0.00	8.00	1.67	0.00
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	6	9.67	1.33	4.83	3.50	0.00
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	6	9.67	0.83	3.83	5.00	0.00
............................................................................................................TATCACAGCCATTTTGATGAGGT...................	23	6	9.33	0.00	8.17	1.17	0.00
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	6	9.17	1.33	6.00	1.83	0.00
............................................................................................................TATCACAGGCATTTTGACGAGT....................	22	6	8.83	0.17	8.00	0.67	0.00
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	6	8.83	1.67	4.17	3.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	6	8.67	0.67	7.00	0.83	0.17
............................................................................................................TATCACAGCCATTTTGACG.......................	19	6	8.67	0.00	3.67	3.50	1.50
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	6	8.50	0.67	5.50	2.33	0.00
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	6	8.50	0.17	4.50	3.83	0.00
.................................................................GCGTCAAAATGACTGTGAGCTAT..............................................................	23	2	25.00	19.00	4.00	2.00	0.00
............................................................................................................TATCACAGCCGTTTTGACGAGTT...................	23	6	8.00	1.00	4.33	2.67	0.00
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	6	8.00	0.17	4.67	3.17	0.00
............................................................................................................TATCACAGCCATTTTGGTGAGTT...................	23	6	8.00	0.17	5.17	2.67	0.00
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	6	7.83	0.50	5.83	1.50	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGTT...................	23	6	7.83	0.67	5.67	1.50	0.00
............................................................................................................TATCACAGCCATTTTGACAAGTT...................	23	6	7.83	0.67	3.17	4.00	0.00
............................................................................................................TACCACAGCCATTTTGACGAGTT...................	23	6	7.67	1.83	2.67	3.17	0.00
................................................................................................................ACAGCCATTTTGATGAGT....................	18	6	7.33	0.00	2.17	5.17	0.00
............................................................................................................TATCACAGCCATGTTGACGAGT....................	22	6	7.33	0.00	5.67	1.50	0.17
............................................................................................................TATCACAGCCAGTTTGACGAGG....................	22	3	14.33	0.00	12.33	2.00	0.00
............................................................................................................TATCACAGCCATTTTGATGTGTT...................	23	6	7.17	0.00	5.17	2.00	0.00
............................................................................................................TATCACGGCCATTTTGACGAGTT...................	23	6	7.17	2.00	3.17	2.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAAT....................	22	6	7.00	0.67	4.00	2.33	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGTT...................	23	6	7.00	0.00	4.17	2.83	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTAA..................	24	3	14.00	5.00	8.33	0.67	0.00
............................................................................................................TATCACAGCCATTGTGACGAGT....................	22	6	7.00	0.00	3.83	3.17	0.00
............................................................................................................AATCACAGCCATTTTGACGAGT....................	22	6	6.83	0.00	5.33	1.50	0.00

droPer1

GCTAC-T---G------------------------------CTG---------CTGCACATTTACGCGTCAAAATGACTGTGAGCTATGT----GTTTTTGA-TCTCATATCACAGCCATTTTGACGAGTTTGATG-TGCAGTCCCACTC	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	6	12025.67	666.00	1602.50	3886.17	5811.17	59.83
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	6	5962.83	566.17	639.83	1545.83	3183.33	27.67
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	6	2396.33	16.67	379.83	1096.00	901.00	2.83
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	6	773.83	5.33	60.50	396.67	310.50	0.83
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	6	500.00	18.67	159.33	153.33	150.33	18.33
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	6	288.50	61.83	12.83	49.50	164.33	0.00
................................................................................................................ACAGCCATTTTGACGAGT....................	18	6	126.00	0.33	18.50	40.00	67.00	0.17
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	6	109.83	9.33	52.17	12.83	34.17	1.33
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	6	92.67	0.83	2.17	27.33	61.33	1.00
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	6	77.17	0.00	12.17	22.33	42.67	0.00
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	6	72.00	0.50	1.50	42.83	27.00	0.17
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	6	64.83	0.00	0.83	6.83	57.17	0.00
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	6	59.17	1.33	0.83	25.50	31.50	0.00
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	6	53.67	0.67	6.33	15.33	31.17	0.17
............................................................................................................TATCACAGCCATTTTGACGA......................	20	6	51.83	1.67	21.33	12.33	13.83	2.67
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	6	51.50	0.00	2.00	15.83	33.67	0.00
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	6	48.33	0.33	5.00	11.50	31.50	0.00
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	6	39.67	0.00	4.50	3.50	31.67	0.00
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	6	35.50	0.17	12.50	5.67	17.17	0.00
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	6	33.67	0.67	1.00	7.17	24.67	0.17
............................................................................................................TAGCACAGCCATTTTGACGAGTT...................	23	6	33.33	0.00	0.83	1.67	30.83	0.00
.................................................................GCGTCAAAATGACTGTGAGCTATG.............................................................	24	2	96.50	47.50	6.00	10.50	31.50	1.00
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	3	62.67	3.00	47.00	2.00	9.33	1.33
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	6	28.50	0.17	3.00	12.17	13.00	0.17
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	6	28.17	0.83	2.17	5.83	19.33	0.00
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	6	27.67	0.50	4.83	2.67	19.67	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGT....................	22	6	27.50	0.00	0.50	3.17	23.83	0.00
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	6	27.00	0.17	2.67	3.33	16.83	4.00
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	6	26.50	0.00	1.33	5.33	19.83	0.00
............................................................................................................TATCACAGCCATTTTGACGTGTT...................	23	6	24.83	0.17	1.83	1.50	21.33	0.00
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	6	24.67	0.17	1.33	4.33	18.83	0.00
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	6	24.50	0.00	2.67	11.67	10.17	0.00
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	6	23.83	0.83	2.00	4.00	17.00	0.00
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	6	23.00	0.67	1.00	5.50	14.50	1.33
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	6	20.67	0.17	0.83	4.67	15.00	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	6	20.50	0.50	2.33	2.67	15.00	0.00
............................................................................................................TATCAGAGCCATTTTGACGAGT....................	22	6	20.00	0.00	0.33	13.67	6.00	0.00
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	6	18.67	0.33	1.17	6.33	10.83	0.00
.............................................................................................................ATCACAGCCATTTTGACGAGTT...................	22	6	18.50	3.33	0.50	5.67	9.00	0.00
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	6	18.33	0.33	2.00	9.83	6.17	0.00
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	6	18.00	0.67	1.17	4.17	12.00	0.00
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	6	17.83	0.33	2.17	4.50	10.83	0.00
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	6	17.67	0.17	4.67	1.33	11.50	0.00
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	6	17.67	0.17	2.00	1.33	14.17	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTC..................	24	6	17.33	9.50	0.33	3.00	4.33	0.17
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	6	17.00	0.33	2.50	3.17	11.00	0.00
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	6	16.67	1.00	1.50	5.50	8.50	0.17
............................................................................................................TATCACAGCCATTTTGTCGAGTT...................	23	6	16.50	0.00	1.00	1.83	13.67	0.00
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	6	16.50	0.17	5.50	2.83	8.00	0.00
............................................................................................................TATCACGGCCATTTTGATGAGTT...................	23	6	16.17	0.17	0.83	7.33	7.83	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	6	16.17	0.50	4.17	4.00	7.50	0.00
............................................................................................................TATCACAGCCATTTTGCTGAGTT...................	23	6	16.00	0.00	1.83	5.50	8.67	0.00
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	6	15.17	0.00	1.17	6.83	7.17	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGTT...................	23	6	14.50	0.00	0.83	1.67	12.00	0.00
............................................................................................................TAGCACAGCCATTTTGATGAGTT...................	23	6	14.33	0.00	0.00	1.67	12.67	0.00
............................................................................................................TATCACAGCCTTTTTGACGAGT....................	22	6	14.00	0.00	1.00	2.50	10.50	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	6	14.00	0.00	0.50	7.17	6.33	0.00
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	6	13.83	0.17	0.67	1.83	11.17	0.00
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	6	13.50	0.33	0.67	4.83	7.67	0.00
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	6	13.17	0.17	1.50	2.00	9.50	0.00
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	6	13.17	0.33	1.50	3.67	7.67	0.00
............................................................................................................TATCACAGCCGTTTTGACGAGTT...................	23	6	13.00	0.17	1.00	2.67	9.17	0.00
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	6	12.67	0.33	1.00	3.00	8.33	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	6	12.50	0.17	1.83	3.67	6.83	0.00
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	6	12.33	0.33	1.83	2.33	7.83	0.00
............................................................................................................TATCACAGCCATTTTCACGAGTT...................	23	6	12.17	0.00	0.50	2.67	9.00	0.00
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	6	12.17	1.33	1.00	2.67	6.83	0.33
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	6	12.00	1.00	0.67	1.83	8.33	0.17
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	6	11.83	0.33	1.33	2.67	7.50	0.00
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	6	11.83	0.00	0.17	2.00	9.67	0.00
............................................................................................................TATCACAGCCATGTTGACGAGT....................	22	6	11.83	0.00	0.17	1.00	10.17	0.50
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	6	11.17	0.33	0.67	2.33	7.83	0.00
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	6	11.00	0.33	0.83	2.50	7.17	0.17
............................................................................................................TATCACAGCCATTGTGACGAGT....................	22	6	11.00	0.00	1.33	1.00	8.67	0.00
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	6	11.00	0.17	1.33	6.83	2.67	0.00
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	6	10.83	0.67	0.33	3.33	6.50	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	6	10.83	0.50	1.00	1.17	8.17	0.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	6	10.67	0.00	1.83	3.00	5.83	0.00
............................................................................................................TAACACAGCCATTTTGACGAGT....................	22	6	10.50	0.17	0.83	1.00	8.50	0.00
............................................................................................................AATCACAGCCATTTTGACGAGT....................	22	6	10.33	0.17	0.83	1.83	7.50	0.00
.............................................................................................................ATCACAGCCATTTTGACGAGT....................	21	6	10.33	1.17	0.17	3.33	5.67	0.00
............................................................................................................TATCACAGCCGTTTTGATGAGTT...................	23	6	10.33	0.33	0.17	5.50	4.33	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	6	10.17	0.00	4.67	1.50	1.83	2.17
............................................................................................................TATCACAGCCATTTTGATGCGTT...................	23	6	10.17	0.00	1.50	3.67	5.00	0.00
................................................................................................................ACAGCCATTTTGATGAGT....................	18	6	9.67	0.00	0.50	5.17	4.00	0.00
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	6	9.50	0.50	2.33	1.17	5.50	0.00
............................................................................................................TATCACAGCCATTTTGCCGCGT....................	22	3	19.00	0.00	0.67	4.00	14.33	0.00
............................................................................................................TATCACAGCCATTTTGACG.......................	19	6	9.33	0.00	1.50	2.33	3.50	2.00
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	6	9.33	0.33	0.33	1.33	7.17	0.17
............................................................................................................TATCACAGCCATTTTGACGGGTT...................	23	6	9.33	0.33	0.83	1.67	6.50	0.00
............................................................................................................TATCACAGCCACTTTGACGAGTT...................	23	6	9.17	0.50	0.50	1.67	6.33	0.17
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	6	9.17	0.00	0.33	3.33	5.50	0.00
............................................................................................................TATCACAGCCATTTTGACGAGGT...................	23	6	8.67	0.00	1.50	1.17	6.00	0.00
............................................................................................................TATCAGAGCCATTTTGACGAGTT...................	23	6	8.67	0.00	0.33	4.50	3.83	0.00
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	6	8.50	0.17	0.33	2.17	5.83	0.00
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	6	8.50	0.50	0.17	1.50	6.33	0.00
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	6	8.33	0.00	0.83	2.17	5.33	0.00
............................................................................................................TATCACAGCCATTTTGATGTGTT...................	23	6	8.33	0.00	1.67	1.50	5.17	0.00
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	6	8.00	0.17	0.50	2.00	5.33	0.00
............................................................................................................CATCACAGCCATTTTGACGAGTT...................	23	6	7.83	0.83	0.50	2.67	3.83	0.00
............................................................................................................TATCACAGCAATTTTGACGAGTT...................	23	6	7.83	0.33	0.83	1.67	5.00	0.00

droWil1

TCCCCCA-ATGTACCTACCCCTGCAACTGCTGTGCTTACAACTG---------ATGTCCATGGTCGCGTCAAAATGACTGTGAGCTATGTTAACCGGTCAGAAATTCATATCACAGCCATTTTGACGAGTTCGATG-GGCATACG----A	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	6	131656.33	1296.17	61401.50	67998.00	960.67
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	6	20813.67	691.83	15726.50	4235.00	160.33
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	6	8829.33	43.00	6642.67	2102.50	41.17
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	6	7265.17	41.17	1531.67	5134.83	557.50
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	6	1688.00	8.33	606.83	1043.00	29.83
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	6	1162.33	5.17	1141.83	15.00	0.33
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	3	1458.33	2.00	1452.33	3.33	0.67
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	6	541.83	59.83	301.17	179.00	1.83
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	6	394.33	1.67	270.17	120.50	2.00
............................................................................................................TATCACAGCCATTTTGACGA......................	20	6	386.83	3.33	54.67	304.83	24.00
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	6	381.67	4.00	89.00	256.33	32.33
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	6	347.50	1.83	203.67	138.33	3.67
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	6	293.50	0.50	85.33	206.83	0.83
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	6	287.33	0.00	77.83	209.50	0.00
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	6	279.33	0.17	81.33	197.83	0.00
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	6	276.83	1.17	58.33	217.17	0.17
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	6	259.00	0.33	36.33	222.17	0.17
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	6	233.00	4.00	70.67	158.17	0.17
................................................................................................................ACAGCCATTTTGACGAGT....................	18	6	219.33	0.67	94.67	120.00	4.00
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	6	217.50	1.33	57.50	157.67	1.00
............................................................................................................TATCACAGCCATTTTGACGAGTTAAA................	26	2	642.50	0.50	641.50	0.50	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	6	206.83	0.17	21.00	185.50	0.17
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	6	195.00	1.00	47.33	142.67	4.00
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	6	183.83	0.33	129.33	53.33	0.83
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	6	179.83	0.33	19.17	121.33	39.00
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	6	179.67	0.50	26.33	152.33	0.50
............................................................................................................TATCACAGCCATTTTGACG.......................	19	6	175.33	0.17	3.50	89.67	82.00
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	6	159.83	2.17	59.17	98.00	0.50
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	6	152.33	1.50	56.67	93.67	0.50
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	6	149.17	2.17	65.50	80.67	0.83
............................................................................................................TATCACAGCCAxTTTGACGAGT....................	21	6	148.83	1.67	64.17	83.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	6	148.67	0.00	37.33	52.50	58.83
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	6	147.00	2.00	58.33	86.33	0.33
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	6	137.83	1.00	43.00	93.33	0.50
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	6	135.00	0.50	53.67	79.67	1.17
............................................................................................................TATCACAGCCATTTTGACGAAT....................	22	6	132.67	1.50	19.33	111.67	0.17
............................................................................................................AATCACAGCCATTTTGACGAGT....................	22	6	132.33	0.00	8.67	123.67	0.00
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	6	129.83	2.00	55.83	70.83	1.17
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	6	126.67	0.67	58.50	67.50	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	6	125.83	0.50	59.17	66.17	0.00
.............................................................................................................ATCACAGCCATTTTGACGAGT....................	21	6	123.67	1.00	30.83	91.00	0.83
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	6	123.33	1.50	53.17	68.67	0.00
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	6	122.33	0.33	23.67	98.17	0.17
............................................................................................................TATCACAGCCATTTTGACGAGTTC..................	24	3	237.00	27.33	53.33	148.67	7.67
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	6	114.67	1.00	25.67	88.00	0.00
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	6	100.83	1.67	31.17	67.67	0.33
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	6	98.83	0.50	34.00	63.83	0.50
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	6	96.17	0.67	32.33	63.00	0.17
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	6	94.00	0.33	37.50	55.33	0.83
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	6	89.67	1.67	32.67	53.33	2.00
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	6	88.17	0.00	8.50	79.67	0.00
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	6	85.83	1.67	27.17	56.83	0.17
............................................................................................................TATCACATCCATTTTGACGAGTT...................	23	6	80.00	0.83	69.83	8.83	0.50
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	6	77.33	0.17	24.50	52.67	0.00
..............................................................................................................TCACAGCCATTTTGACGAGT....................	20	6	75.17	0.50	26.50	48.17	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	6	73.83	0.50	58.50	14.33	0.50
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	6	72.83	0.50	27.50	44.67	0.17
............................................................................................................TATCACAGCCAxxTTGACGAGT....................	20	3	144.67	2.00	46.67	95.33	0.67
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	6	71.17	1.00	27.00	42.50	0.67
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	6	70.33	0.33	44.50	15.67	9.83
.................................................................GCGTCAAAATGACTGTGAGCTATG.............................................................	24	2	211.00	61.00	111.50	37.50	1.00
............................................................................................................TCTCACAGCCATTTTGACGAGT....................	22	6	66.67	0.33	20.33	46.00	0.00
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	6	65.83	0.50	27.00	38.17	0.17
.............................................................................................................ATCACAGCCATTTTGACGAGTT...................	22	6	65.17	1.50	46.17	17.17	0.33
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	6	61.67	0.33	26.00	35.17	0.17
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	6	61.33	0.00	35.67	25.33	0.33
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	6	61.00	0.33	27.50	32.67	0.50
...........................................................................................................ATATCACAGCCATTTTGACGAG.....................	22	6	55.67	0.00	25.33	27.17	3.17
............................................................................................................TATCACGGCCATTTTGATGAGTT...................	23	6	53.50	2.17	7.50	41.50	2.33
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	6	48.00	0.83	37.17	10.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTAA..................	24	3	94.33	0.33	91.33	2.67	0.00
..............................................................................................................TATCAGCCATTTTGACGAGT....................	20	3	88.67	0.67	46.00	42.00	0.00
............................................................................................................TATCACATCCATTTTGATGAGTT...................	23	6	42.50	0.00	38.50	4.00	0.00
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	6	38.67	0.33	33.67	3.67	1.00
............................................................................................................TATCACAGCCATTTTGACGAGTTCC.................	25	6	38.50	1.33	0.83	35.67	0.67
...............................................................................................................CACAGCCATTTTGACGAGT....................	19	6	37.83	0.50	5.00	32.33	0.00
............................................................................................................TATCACAGCCAATTTGACGAGT....................	22	6	35.83	0.50	4.17	31.17	0.00
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	6	35.17	0.00	23.17	11.67	0.33
............................................................................................................TATCACAGCCATATTGACGAGT....................	22	6	34.17	0.00	9.50	22.50	2.17
............................................................................................................TATCACAGCAATTTTGACGAGTT...................	23	6	33.33	0.17	19.83	13.33	0.00
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	6	31.67	0.00	13.33	18.33	0.00
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	6	31.50	0.00	29.67	1.67	0.17
............................................................................................................TATAACAGCCATTTTGACGAGTT...................	23	6	30.50	0.00	18.50	12.00	0.00
............................................................................................................TATCACCGCCATTTTGACGAGT....................	22	6	30.17	0.17	21.17	8.83	0.00
............................................................................................................TATCACAGCCATTTAGACGAGT....................	22	6	29.33	0.00	4.17	25.17	0.00
............................................................................................................TATCACAGCCATTTTGAAGAGTT...................	23	6	28.33	0.00	11.83	16.50	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	6	28.00	0.33	9.50	18.17	0.00
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	6	27.67	1.17	20.33	4.67	1.50
............................................................................................................TAACACAGCCATTTTGACGAGT....................	22	6	27.33	0.33	8.50	18.33	0.17
............................................................................................................CATCACAGCCATTTTGACGAGTT...................	23	6	27.00	0.00	14.67	12.33	0.00
............................................................................................................TATCGCAGCCATTTTGACGAGTT...................	23	6	26.67	0.50	19.83	6.17	0.17
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	6	26.67	1.50	17.00	7.67	0.50
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	6	26.33	0.17	19.33	6.83	0.00
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	6	24.67	1.50	17.17	5.83	0.17
............................................................................................................TATCACAGCCATTTTGACGAGTTAG.................	25	3	49.00	0.00	48.33	0.67	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	6	24.17	0.83	17.50	5.67	0.17
............................................................................................................TATCACAGCCATTTTGACGAC.....................	21	6	23.83	0.17	0.83	3.17	19.67
............................................................................................................TATCACACCCATTTTGACGAGTT...................	23	6	22.67	0.83	16.00	5.83	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGTT...................	24	6	22.33	0.17	17.67	4.50	0.00
............................................................................................................TACCACAGCCATTTTGACGAGTT...................	23	6	22.17	0.50	14.50	7.17	0.00
............................................................................................................TATCACAGCCATTATGACGAGT....................	22	6	21.83	0.33	4.83	16.50	0.17

droVir3

TCTCTCG-CTG------------------C------TGCCAATG---------CTCCATATTGGCGCGTCAAAATGACTGTGAGCTATGTTGTTGCATTTGCCATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	8	8639.13	2698.25	4153.88	1684.88	21.38	80.75
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	8	4037.38	1701.38	1674.25	631.13	7.13	23.50
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	8	983.75	43.75	705.50	231.25	0.25	3.00
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	8	485.00	313.63	121.13	49.75	0.13	0.38
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	8	402.25	78.50	185.25	68.88	16.38	53.25
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	8	362.00	9.50	331.63	16.00	0.00	4.88
............................................................................................................TATCACAGCCATTTTGACGAGTTC..................	24	8	120.75	95.50	14.63	8.88	1.38	0.38
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	8	98.25	25.00	18.25	54.13	0.13	0.75
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	8	78.50	1.75	59.00	17.50	0.13	0.13
................................................................................................................ACAGCCATTTTGACGAGT....................	18	8	69.38	2.50	48.25	18.50	0.00	0.13
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	8	55.75	6.25	40.50	3.75	0.75	4.50
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	5	85.20	11.60	4.00	69.40	0.20	0.00
.................................................................GCGTCAAAATGACTGTGAGCTATG.............................................................	24	2	202.50	131.00	43.50	27.00	1.00	0.00
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	8	44.50	1.13	34.75	8.50	0.13	0.00
............................................................................................................TATCACAGCCATTTTGACG.......................	19	8	37.13	0.13	5.63	0.38	4.38	26.63
............................................................................................................TATCACAGCCATTTTGACGA......................	20	8	35.75	6.63	20.88	2.88	0.88	4.50
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	8	35.25	1.13	7.63	26.38	0.00	0.13
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	8	34.38	1.00	24.38	1.13	0.25	7.63
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	8	32.63	0.38	30.50	1.75	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	8	30.50	6.88	9.25	6.13	1.13	7.13
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	8	27.63	1.75	19.63	6.13	0.00	0.13
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	8	26.38	3.25	7.25	15.63	0.00	0.25
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	8	24.38	2.88	8.25	13.25	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	8	23.38	14.25	5.00	3.25	0.25	0.63
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	8	22.88	5.88	12.25	4.13	0.25	0.38
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	8	22.50	1.13	15.88	5.50	0.00	0.00
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	8	21.25	2.00	17.13	2.00	0.00	0.13
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	8	20.25	3.63	7.13	9.50	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	8	18.38	1.63	13.50	3.25	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	8	17.63	0.75	6.88	10.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	8	16.63	2.50	10.38	3.75	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	8	16.38	0.63	13.25	2.50	0.00	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGT....................	22	8	15.50	0.25	12.63	2.63	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	8	15.13	1.13	10.38	3.63	0.00	0.00
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	8	13.88	0.75	3.13	10.00	0.00	0.00
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	8	13.75	0.13	9.88	3.75	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	8	13.63	7.00	3.25	3.13	0.00	0.25
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	8	12.75	1.25	8.63	2.63	0.00	0.25
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	8	12.25	0.00	9.38	2.75	0.13	0.00
............................................................................................................TAGCACAGCCATTTTGACGAGTT...................	23	8	12.25	0.38	11.38	0.50	0.00	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	8	11.75	0.63	10.00	1.13	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	8	11.50	2.38	5.88	3.25	0.00	0.00
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	8	11.13	2.38	3.00	5.75	0.00	0.00
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	8	11.13	2.50	6.38	2.00	0.13	0.13
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	8	10.50	1.75	3.38	3.63	0.50	1.25
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	8	10.38	4.38	3.75	2.25	0.00	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	8	10.13	2.63	4.13	3.25	0.00	0.13
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	8	9.88	2.63	4.38	2.88	0.00	0.00
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	8	9.63	2.38	3.88	3.25	0.13	0.00
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	8	9.38	2.13	3.88	3.38	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGTTAAA................	26	2	37.50	1.00	0.00	36.50	0.00	0.00
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	8	9.38	2.75	4.75	1.88	0.00	0.00
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	8	9.25	2.75	2.25	4.25	0.00	0.00
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	8	9.25	1.25	5.00	3.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	8	9.00	0.75	2.13	5.75	0.00	0.38
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	8	9.00	2.13	4.63	2.13	0.13	0.00
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	8	8.88	2.38	5.00	1.50	0.00	0.00
............................................................................................................TATCACGGCCATTTTGATGAGTT...................	23	8	8.75	0.13	8.13	0.50	0.00	0.00
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	8	8.63	1.00	6.25	1.25	0.13	0.00
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	8	8.63	1.75	5.50	1.38	0.00	0.00
............................................................................................................TATCACAGCCATGTTGACGAGT....................	22	8	8.63	0.00	7.50	1.13	0.00	0.00
............................................................................................................TATCACAGCCATTTTGATGCGTT...................	23	8	8.63	0.00	7.25	1.38	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGAGGT...................	23	8	8.50	2.88	3.38	2.25	0.00	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	8	8.38	2.25	3.75	2.38	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGTGTT...................	23	8	8.38	0.13	6.88	1.38	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	8	8.38	1.75	3.00	3.63	0.00	0.00
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	8	8.25	1.63	4.38	2.13	0.00	0.13
............................................................................................................TATCACAGCCATTTTGACGAGTAA..................	24	5	13.00	3.40	1.00	8.40	0.00	0.20
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	8	8.13	1.75	2.75	3.50	0.00	0.13
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	8	8.13	0.00	6.50	1.63	0.00	0.00
............................................................................................................TATCACATCCATTTTGACGAGTT...................	23	8	8.00	1.38	2.75	3.75	0.00	0.13
............................................................................................................TATCACAGCCATTTTGACGCGC....................	22	5	11.60	0.00	10.60	1.00	0.00	0.00
............................................................................................................TATCACAGCCTTTTTGACGAGT....................	22	8	7.25	0.50	6.13	0.63	0.00	0.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	8	7.13	3.13	3.00	1.00	0.00	0.00
............................................................................................................TATCACAGCCATTTTGATGAGTTC..................	24	8	6.88	4.13	0.88	1.88	0.00	0.00
............................................................................................................TATCACCGCCATTTTGACGAGT....................	22	8	6.88	0.38	4.38	2.13	0.00	0.00
............................................................................................................TATCACAGCCATTTTGTCGAGTT...................	23	8	6.75	0.13	5.63	1.00	0.00	0.00
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	8	6.75	2.25	2.13	2.25	0.13	0.00
............................................................................................................TATCACAGCCATTTTGATTAGTT...................	23	8	6.50	0.00	1.13	5.38	0.00	0.00
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	8	6.50	0.75	4.75	1.00	0.00	0.00
...........................................................................................................CTATCACAGCCATTTTGACGAGTT...................	24	8	6.00	1.25	2.75	2.00	0.00	0.00
.................................................................GCGTCAAAATGACTGTGAGCT................................................................	21	2	23.50	7.50	2.50	0.00	1.00	12.50
............................................................................................................TATCACAGCCATTTTCACGAGTT...................	23	8	5.88	1.00	2.88	2.00	0.00	0.00
............................................................................................................CATCACAGCCATTTTGACGAGTT...................	23	8	5.88	1.38	3.25	1.25	0.00	0.00
............................................................................................................TATCACAGCCATTTTGATG.......................	19	8	5.75	0.00	1.38	0.00	0.00	4.38
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	8	5.50	1.50	2.88	1.13	0.00	0.00
............................................................................................................TATCACGGCCATTTTGATGAGT....................	22	8	5.50	0.13	5.38	0.00	0.00	0.00
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	8	5.50	0.50	3.63	1.38	0.00	0.00
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	8	5.50	1.25	2.63	1.63	0.00	0.00
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	8	5.38	1.50	3.00	0.88	0.00	0.00
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	8	5.38	1.00	2.75	1.63	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGGGTT...................	23	8	5.38	2.13	2.13	1.13	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACAAGTT...................	23	8	5.13	1.63	1.75	1.75	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGACTT...................	23	8	5.13	1.25	3.00	0.88	0.00	0.00
................................................................................................................ACAGCCATTTTGATGAGT....................	18	8	5.00	0.00	4.88	0.13	0.00	0.00
............................................................................................................TATCACAGCCATTTTGCTGAGTT...................	23	8	5.00	0.00	2.75	2.25	0.00	0.00
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	8	4.88	0.50	3.50	0.88	0.00	0.00
............................................................................................................TATCACAGCCAGTTTGACGAGTT...................	23	8	4.88	0.13	3.88	0.88	0.00	0.00
............................................................................................................TATCACAGCCATTTTAACGAGTT...................	23	8	4.75	1.25	2.75	0.75	0.00	0.00
............................................................................................................TACCACAGCCATTTTGACGAGTT...................	23	8	4.75	1.75	1.63	1.38	0.00	0.00
............................................................................................................TATCACAGCCATTTTGACGCG.....................	21	8	4.63	0.13	3.88	0.50	0.00	0.13

droMoj3

TCCTC-T---A------------------------------ATG---------CTCCATATTTGCGCGTCAAATTGACTGTGAGCTATGT----TTATGAGATTATCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCACC-AA	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	5	45481.40	9241.60	10887.80	8710.40	16641.60
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	5	10026.00	3009.00	2369.20	1745.60	2902.20
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	5	4757.20	113.80	1503.60	829.00	2310.80
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	5	2052.00	220.20	301.00	226.40	1304.40
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	5	774.00	29.00	344.20	214.00	186.80
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	5	759.00	381.80	177.80	122.60	76.80
.............................................................................................................ATCACAGCCATTTTGACGAGTT...................	22	5	749.00	251.40	187.80	119.40	190.40
.............................................................................................................ATCACAGCCATTTTGACGAGT....................	21	5	584.20	195.00	158.80	127.40	103.00
................................................................................................................ACAGCCATTTTGACGAGT....................	18	5	408.00	4.00	127.00	89.00	188.00
............................................................................................................TATCACAGCCCTTTTGACGAGT....................	22	5	364.20	2.20	20.60	187.80	153.60
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	5	359.20	2.00	45.40	198.40	113.40
............................................................................................................TATCACAGCCATTTTGACGAGTTC..................	24	5	202.80	138.60	34.60	26.00	3.60
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	5	182.20	35.40	16.80	11.80	118.20
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	5	150.60	1.80	46.60	63.00	39.20
............................................................................................................TATCACAGCCATTTTGACGA......................	20	5	143.20	24.00	32.40	29.00	57.80
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	5	131.60	12.80	60.60	26.40	31.80
............................................................................................................TATCACAGCCATTTTTACGAGT....................	22	5	118.40	9.20	20.40	67.00	21.80
.............................................................................................................ATCACAGCCATTTTGACGAGTTT..................	23	5	118.00	62.40	28.40	19.40	7.80
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	5	113.20	2.80	17.20	10.60	82.60
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	5	108.20	0.60	48.40	38.60	20.60
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	5	98.60	5.00	52.80	24.40	16.40
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	5	92.00	1.00	13.60	48.40	29.00
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	5	90.00	17.80	18.80	41.00	12.40
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	5	77.60	40.60	17.80	11.80	7.40
............................................................................................................TATCACAGCCATTTTGACGAGG....................	22	5	76.20	3.40	15.60	15.20	42.00
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	5	75.60	1.00	26.80	23.20	24.60
............................................................................................................TATCACAGCCGTTTTGACGAGT....................	22	5	74.40	3.20	25.00	16.80	29.40
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	5	70.40	1.00	4.20	34.80	30.40
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	5	68.40	4.60	15.00	14.20	34.60
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	5	64.40	10.80	19.00	10.40	24.20
............................................................................................................TATCACAGCCATTTTGACGTGT....................	22	5	63.20	1.00	24.40	15.40	22.40
............................................................................................................TATCACAGCCAGTTTGACGAGT....................	22	5	63.20	0.40	28.40	15.60	18.80
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	5	62.80	11.00	8.00	8.00	35.80
............................................................................................................TATCACAGCCATTTTGTCGAGT....................	22	5	61.80	1.40	26.80	12.20	21.40
............................................................................................................TATCACAGCCATTTTGACGGGT....................	22	5	61.20	4.40	17.00	12.40	27.40
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	3	101.67	13.67	3.00	1.00	84.00
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	5	59.00	2.80	16.20	32.60	7.40
............................................................................................................TATCACAGCCATTTTCACGAGT....................	22	5	53.20	1.20	24.20	20.20	7.60
............................................................................................................TATCACATCCATTTTGACGAGT....................	22	5	51.40	24.20	4.80	14.20	8.20
............................................................................................................TATCGCAGCCATTTTGACGAGT....................	22	5	51.00	5.80	14.00	11.60	19.60
............................................................................................................TATCACAGCCATTTTGATGAG.....................	21	5	50.80	3.20	24.00	18.00	5.60
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	5	49.40	4.60	11.00	9.40	24.40
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	5	48.80	4.20	15.20	9.80	19.60
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	5	48.60	7.00	14.80	10.00	16.80
............................................................................................................TATCACAGCCATTTTAACGAGT....................	22	5	47.80	2.40	16.20	16.80	12.40
............................................................................................................TATCACAGCCATTTTGACAAGT....................	22	5	47.00	6.60	10.40	12.80	17.20
................................................................................................................ACAGCCATTTTGATGAGTT...................	19	5	46.80	0.00	19.00	9.40	18.40
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	5	46.40	1.60	8.80	9.20	26.80
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	5	45.80	3.00	13.40	13.00	16.40
............................................................................................................TATCACAGCCCTTTTGACGCGT....................	22	3	75.33	0.00	1.67	56.00	17.67
............................................................................................................TATCACAGCCATTTCGACGAGT....................	22	5	45.00	4.40	16.00	10.60	14.00
.................................................................GCGTCAAATTGACTGTGAGCTATG.............................................................	24	2	110.50	73.00	15.50	13.00	9.00
............................................................................................................CATCACAGCCATTTTGACGAGT....................	22	5	42.40	4.20	15.00	10.40	12.80
............................................................................................................TATCACAGCCATTTTGCTGAGTT...................	23	5	41.80	0.00	11.80	14.00	16.00
............................................................................................................TATCACAGCCATCTTGACGAGT....................	22	5	41.40	4.40	13.20	9.20	14.60
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	5	40.80	2.00	13.40	12.00	13.40
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	5	38.80	2.20	7.40	11.00	18.20
............................................................................................................TATCACAGCCATTTTGACGAGTAA..................	24	3	62.33	10.33	2.67	2.67	46.67
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	5	35.80	4.40	12.00	7.60	11.80
............................................................................................................TGTCACAGCCATTTTGACGAGT....................	22	5	33.00	1.20	7.00	11.00	13.80
.............................................................................................................ATCACAGCCATTTTGACGAG.....................	20	5	32.40	4.20	5.40	6.60	16.20
............................................................................................................TATCACAGCAATTTTGACGAGT....................	22	5	29.20	3.40	9.60	5.00	11.20
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	5	28.80	0.60	10.60	11.60	6.00
............................................................................................................TATCACAGCCTTTTTGACGAGT....................	22	5	28.00	0.00	10.60	6.00	11.40
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	5	27.60	0.80	4.20	3.60	19.00
............................................................................................................TATCACAGCCATTTTGATGAGCT...................	23	5	27.20	0.20	8.00	5.20	13.80
............................................................................................................TATCACAGCCATTCTGACGAGT....................	22	5	27.00	2.00	10.60	7.80	6.60
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	5	26.20	3.40	9.60	3.40	9.80
.............................................................................................................ATCACAGCCATTTTGACGAGTTA..................	23	5	26.00	3.40	1.20	1.40	20.00
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	5	26.00	1.80	3.60	16.40	4.20
............................................................................................................TATCACAGCCATTTTGATGCGTT...................	23	5	26.00	0.00	5.40	10.60	10.00
............................................................................................................TATCACAGCTATTTTGACGAGT....................	22	5	25.60	3.60	6.60	4.80	10.60
............................................................................................................TATCACAGCCAxTTTGACGAGT....................	21	5	25.60	11.60	6.00	5.40	2.60
............................................................................................................TCTCACAGCCATTTTGACGAGT....................	22	5	25.00	0.80	3.40	12.40	8.40
............................................................................................................TATTACAGCCATTTTGACGAGT....................	22	5	24.80	4.40	5.20	5.20	10.00
............................................................................................................TATCACAGCCATTTTGACGCG.....................	21	5	24.20	0.40	2.40	7.40	14.00
............................................................................................................TATCACAGCCCTTTTGATGAGTT...................	23	5	24.20	0.00	1.00	10.40	12.80
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	5	24.00	0.80	5.40	3.80	14.00
............................................................................................................TATCACAACCATTTTGACGAGT....................	22	5	23.60	3.80	6.00	4.40	9.40
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	5	23.60	0.40	7.00	7.40	8.80
............................................................................................................TATCACAGCCATTTTGCCGCGT....................	22	3	39.33	0.00	12.33	19.67	7.33
............................................................................................................TATCACCGCCATTTTGACGAGT....................	22	5	22.80	0.80	6.20	11.40	4.40
............................................................................................................TATCACAGCCATTTTGACCAGT....................	22	5	22.00	3.20	5.20	7.60	6.00
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	5	22.00	6.20	5.40	5.60	4.80
............................................................................................................TATCACAGCCATTTTGACGTGTT...................	23	5	21.80	0.00	10.00	5.00	6.80
............................................................................................................TAGCACAGCCATTTTGACGAGTT...................	23	5	21.80	0.20	10.00	7.20	4.40
.............................................................................................................ATCACAGCCATTTTGACGAGTTC..................	23	5	21.60	12.20	5.00	3.60	0.80
............................................................................................................TATCACAGCCATTTTGATTAGTT...................	23	5	20.60	0.00	3.00	14.00	3.60
.................................................................GCGTCAAATTGACTGTGAGCTAT..............................................................	23	2	51.50	36.50	7.00	5.00	3.00
............................................................................................................TAACACAGCCATTTTGACGAGT....................	22	5	19.80	1.20	7.20	4.80	6.60
............................................................................................................TATCACAGCCATGTTGACGAGT....................	22	5	19.60	0.40	9.40	5.40	4.40
............................................................................................................TATCACAGCCATTTTGACTAGTT...................	23	5	19.40	3.00	3.60	9.80	3.00
............................................................................................................TATCACAGCCCTTTTGACGAG.....................	21	5	18.80	0.00	0.20	6.40	12.20
............................................................................................................GATCACAGCCATTTTGACGAGT....................	22	5	18.60	1.60	6.00	6.40	4.60
............................................................................................................TATCACAGCCATTGTGACGAGT....................	22	5	18.40	0.20	8.40	5.00	4.80
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	5	18.40	3.60	3.80	9.40	1.60
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	5	18.40	2.40	7.00	3.20	5.80
............................................................................................................TATCACAGCCATTTTGACGAAT....................	22	5	18.00	1.60	3.60	5.80	7.00
............................................................................................................TATCACAGACATTTTGATGAGTT...................	23	5	17.60	0.00	2.20	1.60	13.80
............................................................................................................TATCACAGCCATTTTGACGAGGT...................	23	5	17.60	0.40	1.80	4.40	11.00
............................................................................................................AATCACAGCCATTTTGACGAGT....................	22	5	17.40	0.60	5.40	3.60	7.80

droGri2

TCGTT-GC----------------------------TATCAGTG---------CTCCATATTGGCGCGTCAAATTGACTGTGAGCTATGTTGTTGCAGTTGTAATTCATATCACAGCCATTTTGACGAGTTTGATGTGGCAGCCA-----	Size	Hit Count	Total Norm	V109 Male body
............................................................................................................TATCACAGCCATTTTGACGAGTT...................	23	7	987.00	987.00
............................................................................................................TATCACAGCCATTTTGACGAGT....................	22	7	407.29	407.29
............................................................................................................TATCACAGCCATTTTGACGAGTTT..................	24	7	155.43	155.43
............................................................................................................TATCACAGCCATTTTGATGAGTT...................	23	7	23.14	23.14
............................................................................................................TATCACAGCCATTTTGACGAGTTA..................	24	7	10.86	10.86
............................................................................................................TATCACAGCCATTTTGAAGAGTT...................	23	7	9.29	9.29
............................................................................................................TATCACAGCCATTTTGACGAGTC...................	23	7	8.00	8.00
............................................................................................................TATCACAGCCATTTTGACGAG.....................	21	7	7.29	7.29
............................................................................................................TATCACAGCCATTTTGAGGAGTT...................	23	7	6.43	6.43
.................................................................GCGTCAAATTGACTGTGAGCTATG.............................................................	24	2	22.50	22.50
............................................................................................................TATCACAGCCATTTTGATGAGT....................	22	7	5.14	5.14
............................................................................................................TATCACAGCCATTTTGACGAGTG...................	23	7	5.00	5.00
............................................................................................................TATCACAGCCATTTTGAAGAGT....................	22	7	4.86	4.86
............................................................................................................TATCACAGCCATTTTGACGAGTA...................	23	7	3.86	3.86
............................................................................................................TATCACAGACATTTTGACGAGTT...................	23	7	3.57	3.57
............................................................................................................TACCACAGCCATTTTGACGAGTT...................	23	7	3.43	3.43
............................................................................................................TATCAAAGCCATTTTGACGAGTT...................	23	7	3.29	3.29
............................................................................................................TATCACCGCCATTTTGACGAGTT...................	23	7	3.00	3.00
............................................................................................................TATCACAGCCATTTTGAAGAGTTT..................	24	7	2.29	2.29
............................................................................................................TATCACGGCCATTTTGACGAGTT...................	23	7	2.29	2.29
............................................................................................................TATCACAGCCATTTTGAGGAGT....................	22	7	2.14	2.14
............................................................................................................TAACACAGCCATTTTGACGAGTT...................	23	7	2.14	2.14
............................................................................................................TATCAGAGCCATTTTGACGAGTT...................	23	7	2.00	2.00
............................................................................................................TATCACAGTCATTTTGACGAGTT...................	23	7	2.00	2.00
............................................................................................................TATCACCGCCATTTTGACGAGT....................	22	7	2.00	2.00
............................................................................................................TATCACAGCCATTTTGACGATTT...................	23	7	1.86	1.86
............................................................................................................TATCACTGCCATTTTGACGAGTT...................	23	7	1.71	1.71
............................................................................................................TATCACAGCCATTTTGACGCGTT...................	23	7	1.71	1.71
............................................................................................................TATCACAGCCATTTTGCCGAGTT...................	23	7	1.57	1.57
............................................................................................................TATCAAAGCCATTTTGACGAGT....................	22	7	1.57	1.57
............................................................................................................TATCACAGCCCTTTTGACGAGTT...................	23	7	1.57	1.57
............................................................................................................TATCATAGCCATTTTGACGAGTT...................	23	7	1.57	1.57
............................................................................................................TATCACATCCATTTTGACGAGTT...................	23	7	1.57	1.57
............................................................................................................TATCACAGCCATTTTGACGAGCT...................	23	7	1.43	1.43
............................................................................................................TACCACAGCCATTTTGACGAGT....................	22	7	1.29	1.29
............................................................................................................TATCACAGCCATTTTGACGAGTGT..................	24	7	1.29	1.29
............................................................................................................TATCACAGCCATTTTGACGAGTTAA.................	25	5	1.80	1.80
............................................................................................................TATCACAGCCATTTTGATGAGTTT..................	24	7	1.14	1.14
............................................................................................................TAGCACAGCCATTTTGACGAGTT...................	23	7	1.14	1.14
............................................................................................................TATCACAGGCATTTTGACGAGTT...................	23	7	1.14	1.14
............................................................................................................TATCACAGCCATTTTGACGAGTCT..................	24	7	1.14	1.14
............................................................................................................TATCACACCCATTTTGACGAGTT...................	23	7	1.14	1.14
............................................................................................................TATCACAGCCATTTTGACGAGTAT..................	24	7	1.14	1.14
................................................................................................................ACAGCCATTTTGACGAGTT...................	19	7	1.00	1.00
............................................................................................................TATCACAGCCATTTTGACGAGTTTT.................	25	7	1.00	1.00
............................................................................................................TATCACAGCCATTTTGACCAGTT...................	23	7	1.00	1.00
............................................................................................................TATCACAGCCATTTTGAGGAGTTT..................	24	7	1.00	1.00
............................................................................................................TATCACAGCCATTTCGACGAGTT...................	23	7	1.00	1.00
............................................................................................................TATCACAGCAATTTTGACGAGTT...................	23	7	0.86	0.86
............................................................................................................TATCACAGCCATTTTGACAAGTT...................	23	7	0.86	0.86
............................................................................................................TATCACGGCCATTTTGACGAGT....................	22	7	0.86	0.86
............................................................................................................TATCACAGCCATTTTAACGAGTT...................	23	7	0.86	0.86
............................................................................................................TAGCACAGCCATTTTGACGAGT....................	22	7	0.86	0.86
............................................................................................................TATCACAGCCACTTTGACGAGTT...................	23	7	0.86	0.86
............................................................................................................TATCACAGCCATCTTGACGAGTT...................	23	7	0.86	0.86
............................................................................................................TATCACAGTCATTTTGACGAGT....................	22	7	0.71	0.71
............................................................................................................TATCACAGCCATTTTGACGCGT....................	22	7	0.71	0.71
............................................................................................................TCTCACAGCCATTTTGACGAGTT...................	23	7	0.71	0.71
............................................................................................................TATCACAGACATTTTGACGAGT....................	22	7	0.71	0.71
............................................................................................................CATCACAGCCATTTTGACGAGTT...................	23	7	0.71	0.71
............................................................................................................TATCACAGCCATTTTGACTAGT....................	22	7	0.71	0.71
............................................................................................................TATCACAGCCATTTTCACGAGTT...................	23	7	0.71	0.71
............................................................................................................TATCAGAGCCATTTTGACGAGTTT..................	24	7	0.71	0.71
............................................................................................................TATCACAGCCATTTTGGCGAGTT...................	23	7	0.57	0.57
............................................................................................................TATCACAGCCATTTTGACGACTT...................	23	7	0.57	0.57
............................................................................................................TATCACAGTCATTTTGACGAGTTT..................	24	7	0.57	0.57
............................................................................................................TATCACAGCCATTTTTACGAGTT...................	23	7	0.57	0.57
............................................................................................................TATCCCAGCCATTTTGACGAGT....................	22	7	0.57	0.57
............................................................................................................TATAACAGCCATTTTGACGAGTT...................	23	7	0.57	0.57
............................................................................................................TATTACAGCCATTTTGACGAGTT...................	23	7	0.57	0.57
............................................................................................................TATCACACCCATTTTGACGAGT....................	22	7	0.57	0.57
...........................................................................................................CTATCACAGCCATTTTGACGAGTT...................	24	7	0.57	0.57
.........................................................................................TTGTTGCAGTTGTAATTCA..........................................	19	2	2.00	2.00
............................................................................................................TATCACAGCCATTTTGACGCGTTT..................	24	7	0.57	0.57
............................................................................................................TATCATAGCCATTTTGACGAGT....................	22	7	0.57	0.57
............................................................................................................TATCACAGCCATTTTGACGGGTT...................	23	7	0.57	0.57
............................................................................................................TATCACCGCCATTTTGACGAGTTT..................	24	7	0.57	0.57
............................................................................................................TATAACAGCCATTTTGACGAGT....................	22	7	0.57	0.57
............................................................................................................TATCAGAGCCATTTTGACGAGT....................	22	7	0.57	0.57
............................................................................................................TATCACAGCCATTCTGACGAGTT...................	23	7	0.57	0.57
............................................................................................................TATCGCAGCCATTTTGACGAGTT...................	23	7	0.57	0.57
............................................................................................................TATCACAACCATTTTGACGAGTT...................	23	7	0.57	0.57
............................................................................................................TCTCACAGCCATTTTGACGAGT....................	22	7	0.43	0.43
................................................................................................................ACAGCCATTTTGACGAGT....................	18	8	0.38	0.38
............................................................................................................TATCACAGCCATTTTGACGAGAT...................	23	7	0.43	0.43
............................................................................................................TATCACAGCCATTTTGACGAGC....................	22	8	0.38	0.38
............................................................................................................TATCACAGCCATTTTGACGATT....................	22	7	0.43	0.43
............................................................................................................TATCACAGCCACTTTGACGAGT....................	22	7	0.43	0.43
............................................................................................................TATCATAGCCATTTTGACGAGTTT..................	24	7	0.43	0.43
............................................................................................................TAACACAGCCATTTTGACGAGT....................	22	7	0.43	0.43
...........................................................................................................CTATCACAGCCATTTTGACGAGT....................	23	7	0.43	0.43
..............................................................................................................TATCAGCCATTTTGACGAGTT...................	21	5	0.60	0.60
............................................................................................................TATCACAGCCATTTTGGCGAGT....................	22	7	0.43	0.43
............................................................................................................TATCACAGCCATTTTGACGAGTTG..................	24	7	0.43	0.43
............................................................................................................TATCACAGCCATTTTGACGACT....................	22	7	0.43	0.43
............................................................................................................TATCACAGCCATTTTGCCGAGT....................	22	7	0.43	0.43
............................................................................................................TACCACAGCCATTTTGACGAGTTT..................	24	7	0.43	0.43
............................................................................................................TATCACAGCCATTTTGACGAGA....................	22	7	0.43	0.43
............................................................................................................TATCACTGCCATTTTGACGAGTTT..................	24	7	0.43	0.43
............................................................................................................TATCACAGCCATTTTGGCGAGTTT..................	24	7	0.43	0.43
............................................................................................................TATCACAGCCAxTTTGACGAGTT...................	22	7	0.43	0.43

Generated: 04/20/2012 at 05:19:59 EDT

dme-mir-13b-2

chrX:8985263-8985332 +

Known_mirbase

intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup