dme-mir-137- Best orthologs

dme-mir-137	chr2R:11952759-11952849 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11952775-11952796
   star strand at position 11952812-11952834
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr2R:11952744-11952864 -		1	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TAAAA-AGA----------------------------------G----------------------
droSim1	chr2R:10688339-10688459 -	LASTZ	1	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------
droSec1	super_1:9448872-9448992 -	LASTZ	1	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------
droYak2	chr2R:17032219-17032325 +	LASTZ	1	CC--------------------------------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TTAAA-AAA----------------------------------G----------------------
droEre2	scaffold_4845:13905048-13905167 +	LASTZ	1	TTACGGTG-----------GCGACT--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-GGG----------------------------------G----------------------
droEug1	scf7180000409672:857315-857459 -	LASTZ	4	TTAAATGG-----------TCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CCAAGCCACTGAAA---------GCTATAAAAAAACTG----------------------
droBia1	scf7180000301506:2893843-2893998 -	LASTZ	4	TTAAAGTG-----------GCCAT--------------------CTCAACCGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAA-TTAAA-ACG-G------TCACCGAATGGGGCGATA---------------AAA---------ACAG
droTak1	scf7180000415795:609483-609612 +	LASTZ	4	TCAACGTG-----------GCGACG---GCC-----AC-----------------C-TCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CGGAGCC------------------------------A----------------------
droEle1	scf7180000491107:959925-960044 -	LASTZ	4	TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAA-CGG----------------------------------A----------------------
droRho1	scf7180000779911:146905-147024 +	LASTZ	4	TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TGAAA-CGT----------------------------------A----------------------
droFic1	scf7180000453948:1198602-1198734 -	LASTZ	4	TTACAGTG-----------GCAGAA--------------------------------GCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAG-CGC----------------------------------GACACTACTG---------ACAA
droKik1	scf7180000302476:2644168-2644293 -	LASTZ	4	CTATAA---------------------------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAA-TCCAAAC-G-G------AAATCGAAAGT---------------G----------------------
droAna3	scaffold_13266:15447223-15447345 +	LASTZ	1	TTAAAGTG-----------GCAAC-------------------------------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAA--TGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAA-TCGAA-GTG----------------------------------G----------------------
droBip1	scf7180000396547:1600307-1600426 -	LASTZ	4	TTAAAGTG-----------GCAAT-------------------------------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGATG--TGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TCGAA-A------------------------------------G----------------------
dp4	chr3:16385856-16386036 -	LASTZ	1	TTAAGATG-----------ACAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAA-CTG--------AAACGGAAAGTGTCTGTG---------------AAAGGTGTCCTTAAAG
droPer1	super_4:376928-377074 +	LASTZ	1	TTAAGATG-----------ACAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCA---------------------------------------------------------------
droWil1	scaffold_181141:1110993-1111093 -	LASTZ	1	TT---------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTTA--TACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTCAAA-C-A----------------------------------A----------------------
droVir3	scaffold_10468:1951-2100 -	LASTZ	1	GTACGTCGGAGCAGACACGACAGCG---GAC-----ACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGA-TCCAA-T-A----------------------------------A----------------------
droMoj3	scaffold_6496:10610032-10610171 +	LASTZ	1	CAACGG-A-----------GTGTGG----AC-----AC---AAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACAT-GGCAA-TGG------------------------------------------CA---------ACAT
droGri2	scaffold_15245:16918481-16918602 -	LASTZ	1	GGAGATTG-----------GAAAA-------------------------------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACTC-CA-ATA----------------------------------A----------------------

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TAAAA-AGA----------------------------------G----------------------
droSim1	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------
droSec1	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------
droYak2	CC--------------------------------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TTAAA-AAA----------------------------------G----------------------
droEre2	TTACGGTG-----------GCGACT--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-GGG----------------------------------G----------------------
droEug1	TTAAATGG-----------TCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CCAAGCCACTGAAA---------GCTATAAAAAAACTG----------------------
droBia1	TTAAAGTG-----------GCCAT--------------------CTCAACCGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAA-TTAAA-ACG-G------TCACCGAATGGGGCGATA---------------AAA---------ACAG
droTak1	TCAACGTG-----------GCGACG---GCC-----AC-----------------C-TCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CGGAGCC------------------------------A----------------------
droEle1	TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAA-CGG----------------------------------A----------------------
droRho1	TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TGAAA-CGT----------------------------------A----------------------
droFic1	TTACAGTG-----------GCAGAA--------------------------------GCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAG-CGC----------------------------------GACACTACTG---------ACAA
droKik1	CTATAA---------------------------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAA-TCCAAAC-G-G------AAATCGAAAGT---------------G----------------------
droAna3	TTAAAGTG-----------GCAAC-------------------------------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAA--TGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAA-TCGAA-GTG----------------------------------G----------------------
droBip1	TTAAAGTG-----------GCAAT-------------------------------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGATG--TGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TCGAA-A------------------------------------G----------------------
dp4	TTAAGATG-----------ACAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAA-CTG--------AAACGGAAAGTGTCTGTG---------------AAAGGTGTCCTTAAAG
droPer1	TTAAGATG-----------ACAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCA---------------------------------------------------------------
droWil1	TT---------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTTA--TACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTCAAA-C-A----------------------------------A----------------------
droVir3	GTACGTCGGAGCAGACACGACAGCG---GAC-----ACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGA-TCCAA-T-A----------------------------------A----------------------
droMoj3	CAACGG-A-----------GTGTGG----AC-----AC---AAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACAT-GGCAA-TGG------------------------------------------CA---------ACAT
droGri2	GGAGATTG-----------GAAAA-------------------------------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACTC-CA-ATA----------------------------------A----------------------

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	1195.00	0.00	896.00	93.00	206.00
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	879.00	240.00	479.00	47.00	113.00
.........................................................................ACGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	126.00	8.00	70.00	4.00	44.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	44.00	9.00	32.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	36.00	0.00	21.00	5.00	10.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	19.00	9.00	6.00	0.00	4.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	6.00	1.00	5.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGGAG.........................................................................................	22	1	5.00	2.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	5.00	0.00	5.00	0.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTATA...................................................................................................................................	21	1	4.00	2.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	4.00	2.00	0.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACA............................................................................................	19	1	3.00	0.00	2.00	0.00	1.00
..................................................................................................................TATTTCTTGAGAATACACG............................................................................................	19	1	3.00	0.00	3.00	0.00	0.00
...................................................................................................................ATTGCTTGAGAATACACG............................................................................................	18	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGG........................................................................................	23	1	3.00	0.00	2.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATGCACGTAG.........................................................................................	22	1	2.00	0.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACATGTAG.........................................................................................	22	1	2.00	1.00	1.00	0.00	0.00
..................................................................................................................TATTCCTTGAGAATACACG............................................................................................	19	1	2.00	0.00	0.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	2.00	2.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACCCG............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATACGCGTAG.........................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................CACGTGTATGCTCGTAGCT......................................................................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAGTACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGCGAATACACGTA..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCGG.........................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATAAACG............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGG...........................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAAAATACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTA..........................................................................................	21	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAACACACG............................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATATACG............................................................................................	19	2	0.50	0.00	0.50	0.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTATAACA................................................................................................................................	24	1	1.00	1.00	0.00	0.00	0.00
.........................................................................ATGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTTCTTGAGAATACACGTAG.........................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
...........................................................................ACGTATGCTCGTAGCTATAAC.................................................................................................................................	21	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TATTGGTTGAGAATACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.........................................................................ACGTGTATGCTxxTAGCTATAAC.................................................................................................................................	21	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTxAGAATACACGTAGG........................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
.........................................................................ACGTGTATGCTCxTAGCTATAAC.................................................................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TATTACTTGACAATACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.........................................................................ACGTGTATCCTCGTAGCTATAAC.................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTCCTTGAGAATACACGTAG.........................................................................................	22	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAGAA.......................................................................................	24	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................................ATACACGxAGTTCAACGAGAT..............................................................................	20	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................TATTGCTTGGGAATAGACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATCCACG............................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................................ACGGGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATGCACG............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTACC........................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACG............................................................................................	20	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TAGTGCGTGAGAATACACGTAGT........................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGGTTGAGAATACACG............................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
.........................................................................ACGTTTATGCTCGTAGCTA.....................................................................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTAAGAATACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATATACGGAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACGCGGAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTATAAG.................................................................................................................................	23	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACGTA..........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
....................................................................................................................TATCTTGAGAATACACGTAG.........................................................................................	20	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCATGAGAATACACG............................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCCTGAGAATACACG............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATACGCG............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TATTACTTGAGAATACACG............................................................................................	19	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACATGG.........................................................................................	22	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGGATACACG............................................................................................	19	1	1.00	0.00	0.00	0.00	1.00
..................................................................................................................TATTGCTTGGGAATACACG............................................................................................	19	1	1.00	0.00	0.00	1.00	0.00
.....................................................................................................................TGCTTGxGAATACATGTAGT........................................................................................	19	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................AATTGCTTGAGAATACACGTAG.........................................................................................	22	1	1.00	0.00	0.00	1.00	0.00
.........................................................................ACGTGTAGGCTCGTAGCTATAAC.................................................................................................................................	23	1	1.00	0.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGATTACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGGAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
.........................................................................ACGTGTATGCTCGTAGCC......................................................................................................................................	18	1	1.00	0.00	1.00	0.00	0.00
.................................................................................................................CTATTGCTTGAGAATACACGTA..........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATTCACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGTAG.........................................................................................	22	1	1.00	1.00	0.00	0.00	0.00
..................................................................................................................TATTGCGTGAGAATACACGTAG.........................................................................................	22	1	1.00	0.00	1.00	0.00	0.00

droSec1

TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	5116.00	1100.00	1541.00	2475.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	1049.00	226.00	42.00	781.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	262.00	78.00	8.00	176.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	195.00	79.00	52.00	64.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	91.00	27.00	22.00	42.00
.........................................................................ACGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	78.00	5.00	44.00	29.00
..................................................................................................................TATTGCTTGAGAATACACATAG.........................................................................................	22	1	24.00	14.00	2.00	8.00
..................................................................................................................TATTGCTTGAGAATATACGTAG.........................................................................................	22	1	21.00	1.00	15.00	5.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	19.00	2.00	9.00	8.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	19.00	4.00	5.00	10.00
..................................................................................................................TATTGCTTGAGAATACACCTAG.........................................................................................	22	1	16.00	11.00	3.00	2.00
....................................................................................................................TTGCTTGAGAATACACGTAG.........................................................................................	20	1	16.00	5.00	8.00	3.00
..................................................................................................................TATTGCTTGAGAATACACGTAGTT.......................................................................................	24	1	13.00	5.00	0.00	8.00
..................................................................................................................TATTGCTTGAGAATACACTTAG.........................................................................................	22	1	13.00	4.00	4.00	5.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	12.00	5.00	0.00	7.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	10.00	2.00	2.00	6.00
..................................................................................................................TATTGCTTGAGxATACACGTAG.........................................................................................	21	1	10.00	0.00	10.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	9.00	1.00	3.00	5.00
..................................................................................................................TATTGCTTGAGAATACATGTAG.........................................................................................	22	1	8.00	1.00	4.00	3.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	8.00	3.00	0.00	5.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	7.00	1.00	2.00	4.00
..................................................................................................................TATTGCTTGGGAATACACGTAG.........................................................................................	22	1	7.00	1.00	3.00	3.00
.........................................................................ACGTGTATGCTCGTAGCTATA...................................................................................................................................	21	1	7.00	0.00	4.00	3.00
..................................................................................................................GATTGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	1.00	5.00	0.00
..................................................................................................................TATTGCTCGAGAATACACGTAG.........................................................................................	22	1	6.00	2.00	2.00	2.00
..................................................................................................................TCTTGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	5.00	1.00
..................................................................................................................TATTGCTTGAGAATACGCGTAG.........................................................................................	22	1	6.00	0.00	2.00	4.00
..................................................................................................................TATTGCTTGAGAGTACACGTAG.........................................................................................	22	1	6.00	3.00	3.00	0.00
..................................................................................................................TACTGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	2.00	2.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	6.00	2.00	1.00	3.00
..................................................................................................................TATTGCTTGAGAATACACGTAGAT.......................................................................................	24	1	5.00	3.00	0.00	2.00
.........................................................................ACGTGTATGCTCGTAGCTATAA..................................................................................................................................	22	1	5.00	3.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACATA..........................................................................................	21	1	5.00	2.00	0.00	3.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	4.00	0.00	0.00	4.00
..................................................................................................................TATTTCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	4.00
..................................................................................................................TATTGCTTGAGAATACACGTAGAA.......................................................................................	24	1	4.00	0.00	2.00	2.00
..................................................................................................................TGTTGCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	2.00	1.00	1.00
..................................................................................................................CATTGCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	1.00	3.00
..................................................................................................................TATTCCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	2.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGTT..........................................................................................	21	1	4.00	3.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATTCACGTAG.........................................................................................	22	1	4.00	0.00	4.00	0.00
.....................................................................................................................TGCTTGAGAATACACGTAG.........................................................................................	19	1	3.00	0.00	1.00	2.00
..................................................................................................................TATCGCTTGAGAATACACGTAG.........................................................................................	22	1	3.00	1.00	0.00	2.00
..................................................................................................................TATTGCTTGAGACTACACGTAG.........................................................................................	22	1	3.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATGCACGTA..........................................................................................	21	1	3.00	1.00	0.00	2.00
....................................................................................................................TTGCTTGAGAATACACGTAGT........................................................................................	21	1	3.00	0.00	2.00	1.00
..................................................................................................................TATTGCTTGATAATACACGTAG.........................................................................................	22	1	3.00	1.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATGCACGTAG.........................................................................................	22	1	3.00	1.00	2.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTA.....................................................................................................................................	19	1	3.00	0.00	0.00	3.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	3.00
..................................................................................................................TATTGCTTGAGAATACACGAAG.........................................................................................	22	1	3.00	0.00	0.00	3.00
..................................................................................................................TATTGCTTGTGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00
..................................................................................................................TATTGCTTGAAAATACACGTA..........................................................................................	21	1	3.00	0.00	0.00	3.00
..................................................................................................................TATTGCTTGAGAATACCCGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	3.00	0.00	2.00	1.00
..................................................................................................................TATTGCCTGAGAATACACGTAG.........................................................................................	22	1	3.00	1.00	2.00	0.00

droYak2

CC--------------------------------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TTAAA-AAA----------------------------------G----------------------	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	1894.00	158.00	345.00	442.00	851.00	98.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	369.00	6.00	67.00	74.00	218.00	4.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	192.00	0.00	0.00	0.00	0.00	192.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	98.00	0.00	18.00	27.00	52.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	46.00	5.00	8.00	13.00	19.00	1.00
.........................................................................ACGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	37.00	17.00	1.00	0.00	4.00	15.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	20.00	0.00	5.00	1.00	14.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	13.00	0.00	2.00	0.00	11.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	13.00	3.00	3.00	0.00	7.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	11.00	0.00	3.00	1.00	5.00	2.00
..................................................................................................................TATTGCTTGAGAATACCCGTAG.........................................................................................	22	1	10.00	1.00	1.00	0.00	8.00	0.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	9.00	0.00	5.00	0.00	4.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTAT....................................................................................................................................	20	1	8.00	0.00	3.00	0.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	7.00	0.00	0.00	2.00	4.00	1.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	7.00	0.00	2.00	1.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	6.00	0.00	0.00	3.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	5.00	0.00	2.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTT..........................................................................................	21	1	5.00	0.00	0.00	1.00	4.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACGT...........................................................................................	21	1	5.00	0.00	1.00	0.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACTTAG.........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACATAG.........................................................................................	22	1	5.00	0.00	3.00	0.00	2.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAG.........................................................................................	20	1	5.00	0.00	1.00	3.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACCTAG.........................................................................................	22	1	4.00	1.00	0.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGGAG.........................................................................................	22	1	4.00	0.00	2.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	2.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTTG.........................................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGCGAATACACGTAG.........................................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................................................................................TATTGCCTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	2.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGACTACACGTA..........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACGCGTAG.........................................................................................	22	1	3.00	0.00	2.00	0.00	0.00	1.00
.................................................................................................................TTATTGCTTGAGAATACACGTAG.........................................................................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGATAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTC..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTATAA..................................................................................................................................	22	1	3.00	1.00	0.00	0.00	1.00	1.00
..................................................................................................................TATTGCTTGAGTATACACGTAG.........................................................................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
..................................................................................................................CATTGCTTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATCCACGTA..........................................................................................	21	1	3.00	0.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATAAACGTAG.........................................................................................	22	1	3.00	1.00	1.00	0.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATGCACGTAG.........................................................................................	22	1	3.00	1.00	1.00	0.00	1.00	0.00

droEre2

TTACGGTG-----------GCGACT--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-GGG----------------------------------G----------------------	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	4977.00	252.00	598.00	0.00	4127.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	1037.00	2.00	113.00	0.00	922.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	240.00	1.00	34.00	0.00	205.00
.........................................................................ACGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	95.00	18.00	7.00	0.00	70.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	70.00	6.00	8.00	0.00	56.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	57.00	10.00	6.00	0.00	41.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	54.00	0.00	12.00	0.00	42.00
..................................................................................................................TATTGCTTGATAATACACGTAG.........................................................................................	22	1	39.00	2.00	1.00	0.00	36.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	37.00	2.00	1.00	0.00	34.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	33.00	1.00	5.00	0.00	27.00
..................................................................................................................TATTGCTTGAGAATACACTTAG.........................................................................................	22	1	32.00	1.00	3.00	0.00	28.00
..................................................................................................................TATTTCTTGAGAATACACGTAG.........................................................................................	22	1	24.00	3.00	0.00	0.00	21.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	23.00	0.00	5.00	0.00	18.00
.........................................................................ACGTGTATGCTCGTAGCTATA...................................................................................................................................	21	1	19.00	6.00	0.00	0.00	13.00
..................................................................................................................TATTGCTTGAGAATACAAGTAG.........................................................................................	22	1	15.00	0.00	1.00	0.00	14.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	13.00	2.00	2.00	0.00	9.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	13.00	0.00	1.00	0.00	12.00
....................................................................................................................TTGCTTGAGAATACACGTAG.........................................................................................	20	1	11.00	0.00	0.00	0.00	11.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	10.00	0.00	2.00	0.00	8.00
..................................................................................................................TATTGCTTGAGAATACCCGTAG.........................................................................................	22	1	9.00	0.00	3.00	0.00	6.00
.................................................................................................................TTATTGCTTGAGAATACACGTAG.........................................................................................	23	1	9.00	0.00	1.00	0.00	8.00
..................................................................................................................TACTGCTTGAGAATACACGTAG.........................................................................................	22	1	9.00	0.00	1.00	0.00	8.00
..................................................................................................................TATTGCTTGAGAATACACCTAG.........................................................................................	22	1	8.00	0.00	2.00	0.00	6.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	8.00	1.00	2.00	0.00	5.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	8.00	1.00	1.00	0.00	6.00
..................................................................................................................TATTGCTTGAGAATAAACGTAG.........................................................................................	22	1	8.00	0.00	0.00	0.00	8.00
..................................................................................................................TATTGCTTGAGAATACATGTAG.........................................................................................	22	1	8.00	1.00	0.00	0.00	7.00
..................................................................................................................TATTGCTTGAGAGTACACGTAG.........................................................................................	22	1	8.00	1.00	1.00	0.00	6.00
..................................................................................................................TATTGCTTGAAAATACACGTAG.........................................................................................	22	1	7.00	1.00	1.00	0.00	5.00
..................................................................................................................TATTGATTGAGAATACACGTA..........................................................................................	21	1	7.00	0.00	0.00	0.00	7.00
..................................................................................................................TATTGCTTTAGAATACACGTA..........................................................................................	21	1	7.00	0.00	0.00	0.00	7.00
..................................................................................................................TATTGCTTGAGAATACACTTA..........................................................................................	21	1	7.00	0.00	1.00	0.00	6.00
..................................................................................................................TATTCCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	1.00	0.00	5.00
..................................................................................................................TATTGCTCGAGAATACACGTAG.........................................................................................	22	1	6.00	1.00	1.00	0.00	4.00
..................................................................................................................TATTGCTTGAGAACACACGTAG.........................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
.........................................................................ACGTGTATGCTCGTAGCTAT....................................................................................................................................	20	1	6.00	0.00	1.00	0.00	5.00
..................................................................................................................TATTGCTTGGGAATACACGTAG.........................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	6.00	0.00	4.00	0.00	2.00
..................................................................................................................TATCGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	0.00	0.00	6.00
.........................................................................ACGTGTATGCTCGTAGCTA.....................................................................................................................................	19	1	6.00	0.00	0.00	0.00	6.00
..................................................................................................................TATTGCTTGATAATACACGTA..........................................................................................	21	1	6.00	0.00	0.00	0.00	6.00
..................................................................................................................TAGTGCTTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................TATTGATTGAGAATACACGT...........................................................................................	20	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................TATTGCTTGAGGATACACGTA..........................................................................................	21	1	5.00	0.00	2.00	0.00	3.00
..................................................................................................................TATTGCCTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................TATTTCTTGAGAATACACGTA..........................................................................................	21	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................GATTGCTTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	5.00	0.00	2.00	0.00	3.00
..................................................................................................................TATTGCTTGACAATACACGTAG.........................................................................................	22	1	5.00	2.00	1.00	0.00	2.00
..................................................................................................................TAATGCTTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................TATTGCTTGAGAATCCACGTAG.........................................................................................	22	1	4.00	2.00	0.00	0.00	2.00
..................................................................................................................TATTGCTTCAGAATACACGTAG.........................................................................................	22	1	4.00	3.00	0.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTG..........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00
...................................................................................................................ATTGCTTGAGAATACACGTAGT........................................................................................	22	1	4.00	2.00	0.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGCA..........................................................................................	21	1	4.00	0.00	3.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATAAACGTA..........................................................................................	21	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................CATTGCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................TATTGCTTGAGAATACACGGAG.........................................................................................	22	1	4.00	0.00	1.00	0.00	3.00
......................................................................................................................GCTTGAGAATACACGTAG.........................................................................................	18	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................TATTGCTTGAGAATATACGTAG.........................................................................................	22	1	4.00	0.00	1.00	0.00	3.00
..................................................................................................................TATTGCTTGAGCATACACGTAG.........................................................................................	22	1	4.00	0.00	2.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	4.00	0.00	2.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATCCACGTA..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................TATTGCTTGAGAATATACGTA..........................................................................................	21	1	3.00	0.00	1.00	0.00	2.00
..................................................................................................................TATTGCTTAAGAATACACGTAG.........................................................................................	22	1	3.00	1.00	1.00	0.00	1.00
..................................................................................................................TATTGCTTGTGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
.................................................................................................................TTATTGCTTGAGAATACACG............................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................TATTGCTTGCGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
..................................................................................................................TATTxCTTGAGAATACACGTAG.........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................TATTGCTTxAGAATACACGTAG.........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
.................................................................................................................CTATTGCTTGAGAATACACGTA..........................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
..................................................................................................................TATTGCTTGAGxATACACGTAG.........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................TATGGCTTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGTAGAA.......................................................................................	24	1	3.00	0.00	1.00	0.00	2.00
..................................................................................................................TATTGCTCGAGAATACACGTA..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00

droEug1

TTAAATGG-----------TCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CCAAGCCACTGAAA---------GCTATAAAAAAACTG----------------------

Size

Hit Count

Total Norm

droBia1

TTAAAGTG-----------GCCAT--------------------CTCAACCGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAA-TTAAA-ACG-G------TCACCGAATGGGGCGATA---------------AAA---------ACAG

Size

Hit Count

Total Norm

droTak1

TCAACGTG-----------GCGACG---GCC-----AC-----------------C-TCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CGGAGCC------------------------------A----------------------

Size

Hit Count

Total Norm

droEle1

TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAA-CGG----------------------------------A----------------------

Size

Hit Count

Total Norm

droRho1

TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TGAAA-CGT----------------------------------A----------------------

Size

Hit Count

Total Norm

droFic1

TTACAGTG-----------GCAGAA--------------------------------GCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAG-CGC----------------------------------GACACTACTG---------ACAA

Size

Hit Count

Total Norm

droKik1

CTATAA---------------------------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAA-TCCAAAC-G-G------AAATCGAAAGT---------------G----------------------

Size

Hit Count

Total Norm

droAna3

TTAAAGTG-----------GCAAC-------------------------------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAA--TGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAA-TCGAA-GTG----------------------------------G----------------------	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	2478.00	512.00	1289.00	637.00	40.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	418.00	85.00	214.00	117.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	191.00	50.00	78.00	63.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	104.00	38.00	45.00	18.00	3.00
.........................................................................ACGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	50.00	2.00	42.00	4.00	2.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	44.00	6.00	24.00	14.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	41.00	10.00	23.00	7.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	24.00	2.00	12.00	9.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	12.00	3.00	5.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTT..........................................................................................	21	1	11.00	1.00	8.00	2.00	0.00
..................................................................................................................TATTTCTTGAGAATACACGTAG.........................................................................................	22	1	11.00	4.00	6.00	1.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGT...........................................................................................	19	1	11.00	2.00	7.00	2.00	0.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	11.00	0.00	8.00	3.00	0.00
..................................................................................................................TAGTGCTTGAGAATACACGTAG.........................................................................................	22	1	10.00	0.00	10.00	0.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	9.00	3.00	3.00	2.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	9.00	1.00	0.00	7.00	1.00
.................................................................................................................TTATTGCTTGAGAATACACGT...........................................................................................	21	1	8.00	3.00	2.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	7.00	1.00	4.00	2.00	0.00
..................................................................................................................TATTGCTTGATAATACACGTAG.........................................................................................	22	1	7.00	0.00	7.00	0.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGTAG.........................................................................................	22	1	7.00	4.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	7.00	2.00	2.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACTTAG.........................................................................................	22	1	6.00	1.00	5.00	0.00	0.00
..................................................................................................................TATTGCTTGGGAATACACGTAG.........................................................................................	22	1	5.00	2.00	2.00	1.00	0.00
..................................................................................................................TACTGCTTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACATAG.........................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTATA...................................................................................................................................	21	1	5.00	0.00	3.00	1.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGGAG.........................................................................................	22	1	5.00	0.00	0.00	4.00	1.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACGTA..........................................................................................	22	1	5.00	1.00	4.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	5.00	0.00	1.00	4.00	0.00
..................................................................................................................GATTGCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	1.00	2.00	1.00
.........................................................................ACGTGTATGCTCGTAGCTATAA..................................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAGTT.......................................................................................	22	1	4.00	0.00	3.00	0.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAGTT.......................................................................................	24	1	4.00	2.00	0.00	2.00	0.00
..................................................................................................................TATGGCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
..................................................................................................................TATTGCTTGAAAATACACGTAG.........................................................................................	22	1	4.00	1.00	3.00	0.00	0.00
..................................................................................................................TATTGATTGAGAATACACGTA..........................................................................................	21	1	4.00	0.00	3.00	1.00	0.00
..................................................................................................................TATCGCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	1.00	1.00	2.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACGTAG.........................................................................................	23	1	4.00	0.00	3.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	4.00	1.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGATTACACGTAG.........................................................................................	22	1	3.00	2.00	0.00	1.00	0.00
..................................................................................................................TAGTGCTTGAGAATACACGTAT.........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATATACGTAG.........................................................................................	22	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACTCGTAG.........................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTATT........................................................................................	23	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACGCGTAG.........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAGTACACGTAG.........................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
..................................................................................................................TAGTGCTTGAGAATACACGTA..........................................................................................	21	1	3.00	0.00	2.00	1.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTA..........................................................................................	20	1	3.00	1.00	2.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTTG.........................................................................................	22	1	3.00	2.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTCAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00

droBip1

TTAAAGTG-----------GCAAT-------------------------------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGATG--TGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TCGAA-A------------------------------------G----------------------

Size

Hit Count

Total Norm

dp4

TTAAGATG-----------ACAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAA-CTG--------AAACGGAAAGTGTCTGTG---------------AAAGGTGTCCTTAAAG	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	1545.00	340.00	437.00	767.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	186.00	47.00	14.00	125.00	0.00
.........................................................................ACGTGTATACTCATAGCTATAAC.................................................................................................................................	23	1	87.00	0.00	82.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	73.00	12.00	1.00	60.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	41.00	14.00	11.00	16.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTA..........................................................................................	20	1	20.00	6.00	0.00	14.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTAGT........................................................................................	22	1	20.00	1.00	5.00	14.00	0.00
........................................................................CACGTGTATACTCATAGCTATAA..................................................................................................................................	23	1	13.00	3.00	8.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	9.00	0.00	1.00	8.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	9.00	2.00	2.00	5.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGT...........................................................................................	19	1	8.00	1.00	0.00	7.00	0.00
..................................................................................................................TAGTGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	1.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACCCGTAG.........................................................................................	22	1	5.00	1.00	1.00	3.00	0.00
.........................................................................ACGTGTATACTCATAGCTATAA..................................................................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
.........................................................................ACGTGTATACTCATAGCTATA...................................................................................................................................	21	1	5.00	0.00	3.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	5.00	2.00	0.00	3.00	0.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	4.00	0.00	2.00	2.00	0.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	4.00	1.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	4.00	0.00	0.00	3.00	1.00
........................................................................CACGTGTATACTCATAGCTATA...................................................................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAGTT.......................................................................................	22	1	4.00	2.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
.................................................................................................................CTATTGCTTGAGAATACACGTAG.........................................................................................	23	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	4.00	0.00	2.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATGCACGTAG.........................................................................................	22	1	3.00	1.00	0.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCA..........................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGTGAATACACGTAG.........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00
..................................................................................................................TATTGCTTGAGACTACACGTAG.........................................................................................	22	1	3.00	1.00	2.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACAAGTAG.........................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAG.........................................................................................	20	1	3.00	1.00	0.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACGCGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00

droPer1

TTAAGATG-----------ACAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCA---------------------------------------------------------------	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	1823.00	302.00	89.00	638.00	770.00	24.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	370.00	20.00	2.00	147.00	201.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	161.00	7.00	2.00	64.00	88.00	0.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	66.00	0.00	0.00	1.00	3.00	62.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	53.00	11.00	1.00	19.00	22.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTA..........................................................................................	20	1	36.00	2.00	0.00	16.00	18.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGT...........................................................................................	19	1	20.00	0.00	0.00	7.00	13.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTAGT........................................................................................	22	1	17.00	0.00	0.00	12.00	5.00	0.00
.........................................................................ACGTGTATACTCATAGCTATAAC.................................................................................................................................	23	1	16.00	0.00	5.00	2.00	0.00	9.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	16.00	0.00	0.00	8.00	8.00	0.00
........................................................................CACGTGTATACTCATAGCTATAA..................................................................................................................................	23	1	16.00	0.00	1.00	5.00	7.00	3.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	14.00	0.00	0.00	4.00	8.00	2.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	13.00	0.00	1.00	4.00	8.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	12.00	1.00	0.00	6.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	8.00	0.00	0.00	5.00	3.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACGTAG.........................................................................................	23	1	8.00	1.00	0.00	0.00	7.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGGAG.........................................................................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
..................................................................................................................TATTGCTTGAGAATACACCTAG.........................................................................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	7.00	0.00	1.00	4.00	2.00	0.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	7.00	1.00	0.00	5.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	7.00	0.00	0.00	1.00	6.00	0.00
........................................................................CACGTGTATACTCATAGCTAT....................................................................................................................................	21	1	6.00	0.00	0.00	2.00	4.00	0.00
..................................................................................................................TATGGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGTA..........................................................................................	21	1	6.00	0.00	0.00	1.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACTTAG.........................................................................................	22	1	5.00	1.00	1.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTGGT........................................................................................	22	1	5.00	0.00	0.00	3.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGGA..........................................................................................	21	1	5.00	0.00	0.00	1.00	4.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCA..........................................................................................	21	1	4.00	0.00	1.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTTG.........................................................................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
........................................................................CACGTGTATACTCATAGCTATA...................................................................................................................................	22	1	4.00	0.00	2.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGATTACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	4.00	0.00	1.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACCCGTAG.........................................................................................	22	1	4.00	0.00	0.00	2.00	2.00	0.00
..................................................................................................................TATTGCTTCAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGT...........................................................................................	20	1	3.00	0.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGGGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACATAG.........................................................................................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
........................................................................CACGTGTATACTCATAGCT......................................................................................................................................	19	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGTATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTAAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGAAG.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCGTGAGAATACACGTA..........................................................................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGTGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAG.........................................................................................	20	1	3.00	0.00	1.00	0.00	2.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAGTT.......................................................................................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
..................................................................................................................TAGTGCTTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTT..........................................................................................	20	1	3.00	0.00	0.00	0.00	3.00	0.00

droWil1

TT---------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTTA--TACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTCAAA-C-A----------------------------------A----------------------	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	3637.00	178.00	1404.00	1917.00	138.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	353.00	23.00	68.00	261.00	1.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	306.00	0.00	0.00	4.00	302.00
.........................................................................ACGTGTATTCTTATAGCTGTAAC.................................................................................................................................	23	1	134.00	1.00	28.00	6.00	99.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	107.00	5.00	6.00	78.00	18.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	95.00	16.00	5.00	72.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	47.00	5.00	32.00	9.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	17.00	4.00	8.00	4.00	1.00
.........................................................................ACGTGTATTCTTATAGCTGTA...................................................................................................................................	21	1	14.00	0.00	1.00	1.00	12.00
.................................................................................................................TTATTGCTTGAGAATACACGTAG.........................................................................................	23	1	13.00	0.00	2.00	11.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	11.00	1.00	4.00	6.00	0.00
..................................................................................................................TATTGCTTGAGAATACACTTAG.........................................................................................	22	1	11.00	1.00	4.00	5.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	10.00	0.00	0.00	9.00	1.00
..................................................................................................................TATCGCTTGAGAATACACGTAG.........................................................................................	22	1	10.00	1.00	3.00	6.00	0.00
..................................................................................................................TATTGCTTGAGAATACACATAG.........................................................................................	22	1	9.00	0.00	3.00	5.00	1.00
.........................................................................ACGTGTATTCTTATAGCTGTAA..................................................................................................................................	22	1	9.00	0.00	1.00	1.00	7.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	8.00	0.00	1.00	7.00	0.00
..................................................................................................................TATTGCTTGAGAGTACACGTAG.........................................................................................	22	1	8.00	0.00	4.00	4.00	0.00
..................................................................................................................TATTGCTTGAAAATACACGTAG.........................................................................................	22	1	7.00	0.00	1.00	5.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGAAG.........................................................................................	22	1	7.00	1.00	0.00	5.00	1.00
..................................................................................................................TATTGCTTAAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	4.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	6.00	1.00	2.00	3.00	0.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	5.00	1.00	0.00
..................................................................................................................CATTGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	0.00	6.00	0.00
..................................................................................................................TATTTCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	1.00	2.00	3.00	0.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	1.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATGCACGTAG.........................................................................................	22	1	5.00	0.00	0.00	4.00	1.00
..................................................................................................................TATTGCTTGAGCATACACGTAG.........................................................................................	22	1	5.00	1.00	1.00	3.00	0.00
..................................................................................................................AATTGCTTGAGAATACACGTAG.........................................................................................	22	1	5.00	0.00	0.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACGCGTAG.........................................................................................	22	1	5.00	0.00	1.00	3.00	1.00
.................................................................................................................CTATTGCTTGAGAATACACGTAG.........................................................................................	23	1	5.00	1.00	1.00	3.00	0.00
.........................................................................ACGTGTATTCTTATAGCTGT....................................................................................................................................	20	1	5.00	0.00	0.00	0.00	5.00
..................................................................................................................TATTGCTTGAGAATAAACGTAG.........................................................................................	22	1	5.00	0.00	1.00	4.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAG.........................................................................................	20	1	4.00	0.00	0.00	4.00	0.00
..................................................................................................................TATTGCCTGAGAATACACGTAG.........................................................................................	22	1	4.00	1.00	2.00	1.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACGTA..........................................................................................	22	1	4.00	0.00	1.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTG..........................................................................................	21	1	4.00	1.00	0.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAACACACGTAG.........................................................................................	22	1	4.00	0.00	1.00	3.00	0.00
..................................................................................................................TATTGCTTGAGACTACACGTAG.........................................................................................	22	1	4.00	1.00	0.00	3.00	0.00
..................................................................................................................GATTGCTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	4.00	1.00	0.00	3.00	0.00
..................................................................................................................TATTxCTTGAGAATACACGTAG.........................................................................................	21	1	4.00	0.00	2.00	2.00	0.00
.........................................................................ACGTGTATTCTTATAGCTG.....................................................................................................................................	19	1	4.00	0.00	0.00	0.00	4.00
..................................................................................................................TATTGCTTGAGAATCCACGTAG.........................................................................................	22	1	4.00	0.00	1.00	3.00	0.00
..................................................................................................................TACTGCTTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGCGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATATACGTAG.........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGTTTGAGAATACACGTAG.........................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTCAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
.................................................................................................................TTATTGCTTGAGAATACACG............................................................................................	20	1	3.00	0.00	0.00	0.00	3.00
..................................................................................................................TATTCCTTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTCGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
....................................................................................................................TTGCTTGAGAATACACGTAGTT.......................................................................................	22	1	3.00	0.00	0.00	3.00	0.00
.........................................................................ACGTGTATTCTTATAGCTGTAACC................................................................................................................................	24	1	3.00	0.00	0.00	0.00	3.00

droVir3

GTACGTCGGAGCAGACACGACAGCG---GAC-----ACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGA-TCCAA-T-A----------------------------------A----------------------	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	1132.00	353.00	601.00	118.00	3.00	57.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	450.00	83.00	354.00	11.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	189.00	23.00	163.00	0.00	0.00	3.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	96.00	1.00	5.00	0.00	3.00	87.00
.........................................................................ACGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	41.00	1.00	15.00	5.00	3.00	17.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	23.00	1.00	11.00	11.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	16.00	1.00	12.00	0.00	0.00	3.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	12.00	0.00	11.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	10.00	2.00	8.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	9.00	0.00	9.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	9.00	3.00	5.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGCA..........................................................................................	21	1	8.00	1.00	7.00	0.00	0.00	0.00
........................................................................CACGTGTATGCTCGTAGCT......................................................................................................................................	19	1	6.00	0.00	4.00	0.00	0.00	2.00
...................................................................................................................ATTGCTTGAGAATACACGTAGT........................................................................................	22	1	6.00	1.00	5.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGC...........................................................................................	20	1	5.00	0.00	5.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGATAATACACGTAG.........................................................................................	22	1	5.00	0.00	3.00	2.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	5.00	0.00	5.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	5.00	1.00	2.00	0.00	0.00	2.00
..................................................................................................................TATTGCTTGAGAATACACGGAG.........................................................................................	22	1	4.00	0.00	3.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	4.00	0.00	3.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTTG.........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTT..........................................................................................	21	1	4.00	1.00	3.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGACTACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
..................................................................................................................TATTGCTTGGGAATACACGTA..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGGGAATACACGTAG.........................................................................................	22	1	3.00	1.00	2.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACCTAG.........................................................................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATCCACGTAG.........................................................................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00

droMoj3

CAACGG-A-----------GTGTGG----AC-----AC---AAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACAT-GGCAA-TGG------------------------------------------CA---------ACAT	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	3540.00	952.00	1654.00	800.00	134.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	708.00	141.00	378.00	189.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	348.00	70.00	192.00	86.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	90.00	37.00	28.00	21.00	4.00
...................GTGTGC----AC-----AC---GAT-----TGGAAAT.........................................................................................................................................................................	20	1	79.00	79.00	0.00	0.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTATAAC.................................................................................................................................	23	1	55.00	3.00	20.00	12.00	20.00
..................................................................................................................TATTGCTTGAGAATACACGTAT.........................................................................................	22	1	37.00	8.00	18.00	11.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	27.00	12.00	10.00	4.00	1.00
...................GTGTGC----AC-----AC---GAT-----TGGAAA..........................................................................................................................................................................	19	1	26.00	26.00	0.00	0.00	0.00
...................................................................................................................ATTGCTTGAGAATACACGTAG.........................................................................................	21	1	19.00	2.00	10.00	7.00	0.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	15.00	1.00	3.00	11.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	14.00	1.00	7.00	5.00	1.00
..................................................................................................................TATTGCTTGAGCATACACGTAG.........................................................................................	22	1	14.00	1.00	1.00	12.00	0.00
....................TGTGC----AC-----AC---GAT-----TGGAAAT.........................................................................................................................................................................	19	1	12.00	12.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACG............................................................................................	19	1	11.00	1.00	6.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTCG.........................................................................................	22	1	10.00	0.00	2.00	8.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTT..........................................................................................	21	1	10.00	3.00	5.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACCCGTAG.........................................................................................	22	1	9.00	1.00	3.00	4.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGCAG.........................................................................................	22	1	8.00	0.00	5.00	3.00	0.00
..................................................................................................................TAGTGCTTGAGAATACACGTAG.........................................................................................	22	1	8.00	0.00	6.00	2.00	0.00
..................................................................................................................TATTGCTGGAGAATACACGTAG.........................................................................................	22	1	7.00	0.00	6.00	1.00	0.00
..................................................................................................................TGTTGCTTGAGAATACACGTAG.........................................................................................	22	1	7.00	1.00	4.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACCCGT...........................................................................................	20	1	7.00	0.00	0.00	7.00	0.00
..................................................................................................................TATTGCTTGATAATACACGTAG.........................................................................................	22	1	6.00	0.00	0.00	6.00	0.00
..................................................................................................................CATTGCTTGAGAATACACGTAG.........................................................................................	22	1	6.00	1.00	5.00	0.00	0.00
.....................GTGC----AC-----AC---GAT-----TGGAAAT.........................................................................................................................................................................	18	1	6.00	6.00	0.00	0.00	0.00
..................................................................................................................TATTGCTTGAGACTACACGTAG.........................................................................................	22	1	6.00	0.00	1.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACTTAG.........................................................................................	22	1	6.00	3.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAA.........................................................................................	22	1	6.00	0.00	4.00	2.00	0.00
..................................................................................................................TATTGATTGAGAATACACGTAG.........................................................................................	22	1	6.00	0.00	5.00	1.00	0.00
..................................................................................................................TATTGCTTTAGAATACACGTA..........................................................................................	21	1	6.00	1.00	2.00	3.00	0.00
..................................................................................................................TATTGCTTGAGAATACATGTAG.........................................................................................	22	1	6.00	4.00	0.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGAAG.........................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGTA..........................................................................................	21	1	5.00	0.00	1.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTTG.........................................................................................	22	1	5.00	0.00	3.00	2.00	0.00
..................................................................................................................TATTGCTTGAGGATACACGTAG.........................................................................................	22	1	5.00	0.00	5.00	0.00	0.00
.........................................................................ACGTGTATGCTCGTAGCTATA...................................................................................................................................	21	1	5.00	0.00	2.00	0.00	3.00
..................................................................................................................TATTGCTTGAGAATACACGTAC.........................................................................................	22	1	5.00	1.00	2.00	2.00	0.00
..................................................................................................................TATTGCTTTAGAATACACGT...........................................................................................	20	1	5.00	0.00	2.00	3.00	0.00
..................................................................................................................TATTGCTTGAGATTACACGTAG.........................................................................................	22	1	5.00	0.00	4.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACCCGTA..........................................................................................	21	1	5.00	0.00	0.00	5.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGTT-......................................................................................	24	1	5.00	3.00	1.00	0.00	1.00
....................................................................................................................TTGCTTGAGAATACACGTAG.........................................................................................	20	1	5.00	3.00	2.00	0.00	0.00
..................................................................................................................TATTACTTGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TATTGCTCGAGAATACACGTAG.........................................................................................	22	1	4.00	0.00	0.00	4.00	0.00
..................................................................................................................TATTGCTTGAGAATGCACGTAG.........................................................................................	22	1	4.00	0.00	2.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGGAG.........................................................................................	22	1	4.00	0.00	4.00	0.00	0.00
..................................................................................................................TATTGCTTGAGAATACACATAG.........................................................................................	22	1	4.00	1.00	2.00	1.00	0.00
..................................................................................................................TATTGCCTGAGAATACACGTAG.........................................................................................	22	1	4.00	1.00	1.00	1.00	1.00
.........................................................................ACGTGTATGCTCGTAGCTATAA..................................................................................................................................	22	1	4.00	0.00	2.00	1.00	1.00
..................................................................................................................TATTGCTTGAGAATACACCTAG.........................................................................................	22	1	4.00	0.00	2.00	1.00	1.00
...................................................................................................................ATTGCTTGAGAATACACGT...........................................................................................	19	1	3.00	1.00	0.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAGTACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	1.00	1.00
..................................................................................................................TACTGCTTGAGAATACACGTAG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGTAGC........................................................................................	23	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTCAGAATACACGTA..........................................................................................	21	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGAGAATCCACGTAG.........................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATCCACGTA..........................................................................................	21	1	3.00	0.00	3.00	0.00	0.00
...................GTGTGC----AC-----AC---GAT-----TGGAA...........................................................................................................................................................................	18	1	3.00	3.00	0.00	0.00	0.00
..................................................................................................................TATTGTTTGAGAATACACGTAG.........................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATACACGGAC.........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................TAGTGCTTGAGAATACACGTTG.........................................................................................	22	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGGGAATACACGTAG.........................................................................................	22	1	3.00	1.00	1.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAATTCACGTAG.........................................................................................	22	1	3.00	2.00	1.00	0.00	0.00
..................................................................................................................TATTGCTTGAGCATACACGT...........................................................................................	20	1	3.00	0.00	1.00	2.00	0.00
..................................................................................................................TATTGCTTGCGAATACACGTAG.........................................................................................	22	1	3.00	0.00	2.00	1.00	0.00
..................................................................................................................TATTGCTTGAGAGTACACGTA..........................................................................................	21	1	3.00	1.00	2.00	0.00	0.00

droGri2

GGAGATTG-----------GAAAA-------------------------------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACTC-CA-ATA----------------------------------A----------------------	Size	Hit Count	Total Norm	V109 Male body
..................................................................................................................TATTGCTTGAGAATACACGTAG.........................................................................................	22	1	46.00	46.00
..................................................................................................................TATTGCTTGAGAATACACGTA..........................................................................................	21	1	12.00	12.00
..................................................................................................................TATTGCTTGAGAATACACGT...........................................................................................	20	1	6.00	6.00
..................................................................................................................TATTGCTTGAGAATACATGTAG.........................................................................................	22	1	2.00	2.00
..................................................................................................................TATTGCTTGAGAATACAAGTAG.........................................................................................	22	1	1.00	1.00
..................................................................................................................TATTGCTTTAGAATACACGTAG.........................................................................................	22	1	1.00	1.00
..................................................................................................................TATTGCTTGAGAATACAGGTAG.........................................................................................	22	1	1.00	1.00
..................................................................................................................TATTGCTCGAGAATACACGTAG.........................................................................................	22	1	1.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAGA........................................................................................	23	1	1.00	1.00
..................................................................................................................TAATGCTTGAGAATACACGTA..........................................................................................	21	1	1.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTGG.........................................................................................	22	1	1.00	1.00
..................................................................................................................TATTGCTTGAGAATACACGTAGT........................................................................................	23	1	1.00	1.00

Generated: 04/20/2012 at 05:20:03 EDT

dme-mir-137

chr2R:11952759-11952849 -

Known_mirbase

intergenic

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup