dme-mir-137- 12- and 20-way alignments

dme-mir-137	chr2R:11952759-11952849 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	intergenic

Legend:

   mature strand at position 11952775-11952796
   star strand at position 11952812-11952834
   mutations
   read mismatches
   coordinate mismatch (possible incorrect ortholog)

12-way Fast Statistical Aligner re-alignment (From MAFs)

Species	Coordinate	Alignment
dm3	chr2R:11952744-11952864 -	TTAC-G-------ATGGCGTCGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA-AT--CCAAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TAAAAAGAG
droSim1	chr2R:10688339-10688459 -	TTAC-G-------ATGGCGTCGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA-AT--CCAAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAAAGCG
droSec1	super_1:9448872-9448992 -	TTAC-G-------ATGGCGTCGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA-AT--CCAAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAAAGCG
droYak2	chr2R:17032208-17032325 +	CTTCCA-------GTT--AA-CC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC-AT--CC-AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TTAAAAAAG
droEre2	scaffold_4845:13905048-13905167 +	TTAC-G-------GTGGCGA--------------------------------CTCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC-AT--CC-AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAAGGGG
droAna3	scaffold_13266:15447223-15447345 +	TTAA-A-------GTGGCAA-------------------------------CCTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA-ATGCG-AAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAA-TCGAAGTGG
dp4	chr3:16385889-16386036 -	TTAA-G-------ATGACAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT-AT--CCGAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAACTGA
droPer1	super_4:376928-377080 +	TTAA-G-------ATGACAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT-AT--CCGAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAACTGA
droWil1	scaffold_181141:1110993-1111093 -	TT------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT-ATACA-AAATGTTATTGCTTGAGAATACACGTAGTT-AACTAGATTCGTTCAACGG-GTCAAACAA
droVir3	scaffold_10468:1950-2093 -	GGAG-CAGACACGACAGCG------GAC-----ACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACA-ATC-AAATGTTATTGCTTGAGAATACACGTAGTT-AACAAGATTCTCTCAACGA-TCCAATAAA
droMoj3	scaffold_6496:10610036-10610166 +	GGAG-T-------GTGGACA-----------------CAAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACA-ATC-AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACAT-GGCAATGGC
droGri2	scaffold_15245:16918480-16918602 -	GGAG-A-------TTGGAAA-------------------------------ATTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACA-ATC-AAATGTTATTGCTTGAGAATACACGTAGTT-AACAAGATTGCCTCAACGACTCCAATAAC

20-way Fast Statistical Aligner re-alignment (Top LASTZ hits)

Species	Coordinate	Lastz Id	Alignment
dm3	chr2R:11952744-11952864 -	NA	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TAAAA-AGA----------------------------------G----------------------
droSim1	chr2R:10688339-10688459 -	22	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------
droSec1	super_1:9448872-9448992 -	25	TTACGATG-----------GCGTCG--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAA--TCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-AGC----------------------------------G----------------------
droYak2	chr2R:17032219-17032325 +	7	CC--------------------------------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TTAAA-AAA----------------------------------G----------------------
droEre2	scaffold_4845:13905048-13905167 +	1	TTACGGTG-----------GCGACT--------------------------------CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGACA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-GGG----------------------------------G----------------------
droEug1	scf7180000409672:857315-857459 -	2	TTAAATGG-----------TCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CCAAGCCACTGAAA---------GCTATAAAAAAACTG----------------------
droBia1	scf7180000301506:2893843-2893998 -	2	TTAAAGTG-----------GCCAT--------------------CTCAACCGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAA-TTAAA-ACG-G------TCACCGAATGGGGCGATA---------------AAA---------ACAG
droTak1	scf7180000415795:609483-609612 +	1	TCAACGTG-----------GCGACG---GCC-----AC-----------------C-TCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAA-CGGAGCC------------------------------A----------------------
droEle1	scf7180000491107:959925-960044 -	2	TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAA-CGG----------------------------------A----------------------
droRho1	scf7180000779911:146905-147024 +	1	TTAAAGTG-----------GCGACG--------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TGAAA-CGT----------------------------------A----------------------
droFic1	scf7180000453948:1198602-1198734 -	1	TTACAGTG-----------GCAGAA--------------------------------GCTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGATA--TCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAA-TCAAG-CGC----------------------------------GACACTACTG---------ACAA
droKik1	scf7180000302476:2644168-2644293 -	2	CTATAA---------------------------------------------------GCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGATA--TCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAA-TCCAAAC-G-G------AAATCGAAAGT---------------G----------------------
droAna3	scaffold_13266:15447223-15447345 +	2	TTAAAGTG-----------GCAAC-------------------------------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAAA--TGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAA-TCGAA-GTG----------------------------------G----------------------
droBip1	scf7180000396547:1600307-1600426 -	2	TTAAAGTG-----------GCAAT-------------------------------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGATG--TGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAA-TCGAA-A------------------------------------G----------------------
dp4	chr3:16385856-16386036 -	2	TTAAGATG-----------ACAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAA-CTG--------AAACGGAAAGTGTCTGTG---------------AAAGGTGTCCTTAAAG
droPer1	super_4:376928-377074 +	2	TTAAGATG-----------ACAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATA--TCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCA---------------------------------------------------------------
droWil1	scaffold_181141:1110993-1111093 -	1	TT---------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTTA--TACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAACGGGTCAAA-C-A----------------------------------A----------------------
droVir3	scaffold_10468:1951-2100 -	1	GTACGTCGGAGCAGACACGACAGCG---GAC-----ACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGA-TCCAA-T-A----------------------------------A----------------------
droMoj3	scaffold_6496:10610032-10610171 +	1	CAACGG-A-----------GTGTGG----AC-----AC---AAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATC--AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACAT-GGCAA-TGG------------------------------------------CA---------ACAT
droGri2	scaffold_15245:16918481-16918602 -	1	GGAGATTG-----------GAAAA-------------------------------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATC--AAATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGACTC-CA-ATA----------------------------------A----------------------

[View All Possible Orthologs]

Original 12-way multiz alignment with reads super-imposed

Species

Alignment

dm3

TTAC-G-------ATGGCGTCGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA-AT--CCAAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TAAAAAGAG

Size

Hit Count

Total Norm

droSim1

TTAC-G-------ATGGCGTCGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA-AT--CCAAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAAAGCG	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	1195.00	0.00	896.00	93.00	206.00
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	879.00	240.00	479.00	47.00	113.00
......................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................	23	1	126.00	8.00	70.00	4.00	44.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	44.00	9.00	32.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	36.00	0.00	21.00	5.00	10.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	19.00	9.00	6.00	0.00	4.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	6.00	1.00	5.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	5.00	1.00	4.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGGAG................................	22	1	5.00	2.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	5.00	0.00	5.00	0.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATA..........................................................................	21	1	4.00	2.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	4.00	2.00	0.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACA...................................	19	1	3.00	0.00	2.00	0.00	1.00
...............................................................................................................TATTTCTTGAGAATACACG...................................	19	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................ATTGCTTGAGAATACACG...................................	18	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGG...............................	23	1	3.00	0.00	2.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATGCACGTAG................................	22	1	2.00	0.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACATGTAG................................	22	1	2.00	1.00	1.00	0.00	0.00
...............................................................................................................TATTCCTTGAGAATACACG...................................	19	1	2.00	0.00	0.00	0.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	2.00	2.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACCCG...................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATACGCGTAG................................	22	1	1.00	0.00	1.00	0.00	0.00
.....................................................................CACGTGTATGCTCGTAGCT.............................................................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAGTACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGCGAATACACGTA.................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCGG................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATAAACG...................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGG..................................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAAAATACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTA.................................	21	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAACACACG...................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATATACG...................................	19	2	0.50	0.00	0.50	0.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATAACA.......................................................................	24	1	1.00	1.00	0.00	0.00	0.00
......................................................................ATGTGTATGCTCGTAGCTATAAC........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTTCTTGAGAATACACGTAG................................	22	1	1.00	0.00	1.00	0.00	0.00
........................................................................ACGTATGCTCGTAGCTATAAC........................................................................	21	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TATTGGTTGAGAATACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................ACGTGTATGCTxxTAGCTATAAC........................................................................	21	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTxAGAATACACGTAGG...............................	22	1	1.00	0.00	1.00	0.00	0.00
......................................................................ACGTGTATGCTCxTAGCTATAAC........................................................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TATTACTTGACAATACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................ACGTGTATCCTCGTAGCTATAAC........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTCCTTGAGAATACACGTAG................................	22	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAGAA..............................	24	1	1.00	0.00	1.00	0.00	0.00
...........................................................................................................................ATACACGxAGTTCAACGAGAT.....................	20	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................TATTGCTTGGGAATAGACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATCCACG...................................	19	1	1.00	0.00	1.00	0.00	0.00
......................................................................ACGGGTATGCTCGTAGCTATAAC........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATGCACG...................................	19	1	1.00	0.00	0.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTACC...............................	23	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACG...................................	20	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TAGTGCGTGAGAATACACGTAGT...............................	23	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGGTTGAGAATACACG...................................	19	1	1.00	0.00	1.00	0.00	0.00
......................................................................ACGTTTATGCTCGTAGCTA............................................................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTAAGAATACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATATACGGAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACGCGGAG................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATAAG........................................................................	23	1	1.00	1.00	0.00	0.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACGTA.................................	22	1	1.00	1.00	0.00	0.00	0.00
.................................................................................................................TATCTTGAGAATACACGTAG................................	20	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCATGAGAATACACG...................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCCTGAGAATACACG...................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATACGCG...................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TATTACTTGAGAATACACG...................................	19	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACATGG................................	22	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGGATACACG...................................	19	1	1.00	0.00	0.00	0.00	1.00
...............................................................................................................TATTGCTTGGGAATACACG...................................	19	1	1.00	0.00	0.00	1.00	0.00
..................................................................................................................TGCTTGxGAATACATGTAGT...............................	19	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................AATTGCTTGAGAATACACGTAG................................	22	1	1.00	0.00	0.00	1.00	0.00
......................................................................ACGTGTAGGCTCGTAGCTATAAC........................................................................	23	1	1.00	0.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGATTACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGGAG................................	22	1	1.00	1.00	0.00	0.00	0.00
......................................................................ACGTGTATGCTCGTAGCC.............................................................................	18	1	1.00	0.00	1.00	0.00	0.00
..............................................................................................................CTATTGCTTGAGAATACACGTA.................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATTCACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGTAG................................	22	1	1.00	1.00	0.00	0.00	0.00
...............................................................................................................TATTGCGTGAGAATACACGTAG................................	22	1	1.00	0.00	1.00	0.00	0.00

droSec1

TTAC-G-------ATGGCGTCGC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA-AT--CCAAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAAAGCG	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	5116.00	1100.00	1541.00	2475.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	1049.00	226.00	42.00	781.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	262.00	78.00	8.00	176.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	195.00	79.00	52.00	64.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	91.00	27.00	22.00	42.00
......................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................	23	1	78.00	5.00	44.00	29.00
...............................................................................................................TATTGCTTGAGAATACACATAG................................	22	1	24.00	14.00	2.00	8.00
...............................................................................................................TATTGCTTGAGAATATACGTAG................................	22	1	21.00	1.00	15.00	5.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	19.00	2.00	9.00	8.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	19.00	4.00	5.00	10.00
...............................................................................................................TATTGCTTGAGAATACACCTAG................................	22	1	16.00	11.00	3.00	2.00
.................................................................................................................TTGCTTGAGAATACACGTAG................................	20	1	16.00	5.00	8.00	3.00
...............................................................................................................TATTGCTTGAGAATACACGTAGTT..............................	24	1	13.00	5.00	0.00	8.00
...............................................................................................................TATTGCTTGAGAATACACTTAG................................	22	1	13.00	4.00	4.00	5.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	12.00	5.00	0.00	7.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	10.00	2.00	2.00	6.00
...............................................................................................................TATTGCTTGAGxATACACGTAG................................	21	1	10.00	0.00	10.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	9.00	1.00	3.00	5.00
...............................................................................................................TATTGCTTGAGAATACATGTAG................................	22	1	8.00	1.00	4.00	3.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	8.00	3.00	0.00	5.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	7.00	1.00	2.00	4.00
...............................................................................................................TATTGCTTGGGAATACACGTAG................................	22	1	7.00	1.00	3.00	3.00
......................................................................ACGTGTATGCTCGTAGCTATA..........................................................................	21	1	7.00	0.00	4.00	3.00
...............................................................................................................GATTGCTTGAGAATACACGTAG................................	22	1	6.00	1.00	5.00	0.00
...............................................................................................................TATTGCTCGAGAATACACGTAG................................	22	1	6.00	2.00	2.00	2.00
...............................................................................................................TCTTGCTTGAGAATACACGTAG................................	22	1	6.00	0.00	5.00	1.00
...............................................................................................................TATTGCTTGAGAATACGCGTAG................................	22	1	6.00	0.00	2.00	4.00
...............................................................................................................TATTGCTTGAGAGTACACGTAG................................	22	1	6.00	3.00	3.00	0.00
...............................................................................................................TACTGCTTGAGAATACACGTAG................................	22	1	6.00	2.00	2.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	6.00	2.00	1.00	3.00
...............................................................................................................TATTGCTTGAGAATACACGTAGAT..............................	24	1	5.00	3.00	0.00	2.00
......................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................	22	1	5.00	3.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACATA.................................	21	1	5.00	2.00	0.00	3.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	4.00	0.00	0.00	4.00
...............................................................................................................TATTTCTTGAGAATACACGTAG................................	22	1	4.00	0.00	0.00	4.00
...............................................................................................................TATTGCTTGAGAATACACGTAGAA..............................	24	1	4.00	0.00	2.00	2.00
...............................................................................................................TGTTGCTTGAGAATACACGTAG................................	22	1	4.00	2.00	1.00	1.00
...............................................................................................................CATTGCTTGAGAATACACGTAG................................	22	1	4.00	0.00	1.00	3.00
...............................................................................................................TATTCCTTGAGAATACACGTAG................................	22	1	4.00	0.00	2.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGTT.................................	21	1	4.00	3.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATTCACGTAG................................	22	1	4.00	0.00	4.00	0.00
..................................................................................................................TGCTTGAGAATACACGTAG................................	19	1	3.00	0.00	1.00	2.00
...............................................................................................................TATCGCTTGAGAATACACGTAG................................	22	1	3.00	1.00	0.00	2.00
...............................................................................................................TATTGCTTGAGACTACACGTAG................................	22	1	3.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATGCACGTA.................................	21	1	3.00	1.00	0.00	2.00
.................................................................................................................TTGCTTGAGAATACACGTAGT...............................	21	1	3.00	0.00	2.00	1.00
...............................................................................................................TATTGCTTGATAATACACGTAG................................	22	1	3.00	1.00	0.00	2.00
...............................................................................................................TATTGCTTGAGAATGCACGTAG................................	22	1	3.00	1.00	2.00	0.00
......................................................................ACGTGTATGCTCGTAGCTA............................................................................	19	1	3.00	0.00	0.00	3.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	3.00	0.00	1.00	2.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	3.00	0.00	0.00	3.00
...............................................................................................................TATTGCTTGAGAATACACGAAG................................	22	1	3.00	0.00	0.00	3.00
...............................................................................................................TATTGCTTGTGAATACACGTAG................................	22	1	3.00	0.00	1.00	2.00
...............................................................................................................TATTGCTTGAAAATACACGTA.................................	21	1	3.00	0.00	0.00	3.00
...............................................................................................................TATTGCTTGAGAATACCCGTAG................................	22	1	3.00	0.00	1.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	3.00	0.00	2.00	1.00
...............................................................................................................TATTGCCTGAGAATACACGTAG................................	22	1	3.00	1.00	2.00	0.00

droYak2

CTTCCA-------GTT--AA-CC--------------------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC-AT--CC-AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TTAAAAAAG	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	1894.00	158.00	345.00	442.00	851.00	98.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	369.00	6.00	67.00	74.00	218.00	4.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	192.00	0.00	0.00	0.00	0.00	192.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	98.00	0.00	18.00	27.00	52.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	46.00	5.00	8.00	13.00	19.00	1.00
......................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................	23	1	37.00	17.00	1.00	0.00	4.00	15.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	20.00	0.00	5.00	1.00	14.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	13.00	3.00	3.00	0.00	7.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	13.00	0.00	2.00	0.00	11.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	11.00	0.00	3.00	1.00	5.00	2.00
...............................................................................................................TATTGCTTGAGAATACCCGTAG................................	22	1	10.00	1.00	1.00	0.00	8.00	0.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	9.00	0.00	5.00	0.00	4.00	0.00
......................................................................ACGTGTATGCTCGTAGCTAT...........................................................................	20	1	8.00	0.00	3.00	0.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	7.00	0.00	0.00	2.00	4.00	1.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	7.00	0.00	2.00	1.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	6.00	0.00	0.00	3.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACTTAG................................	22	1	5.00	0.00	0.00	0.00	5.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAG................................	20	1	5.00	0.00	1.00	3.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTT.................................	21	1	5.00	0.00	0.00	1.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACATAG................................	22	1	5.00	0.00	3.00	0.00	2.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACGT..................................	21	1	5.00	0.00	1.00	0.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	5.00	0.00	2.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGCGAATACACGTAG................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGACTACACGTA.................................	21	1	4.00	0.00	0.00	0.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTTG................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
...............................................................................................................TATTGCCTGAGAATACACGTAG................................	22	1	4.00	0.00	2.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGTAG................................	22	1	4.00	0.00	0.00	2.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACCTAG................................	22	1	4.00	1.00	0.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGGAG................................	22	1	4.00	0.00	2.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTC.................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACGTAG................................	23	1	3.00	0.00	1.00	0.00	2.00	0.00
...............................................................................................................CATTGCTTGAGAATACACGTAG................................	22	1	3.00	0.00	2.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATAAACGTAG................................	22	1	3.00	1.00	1.00	0.00	1.00	0.00
...............................................................................................................TATTGCTTGAGTATACACGTAG................................	22	1	3.00	1.00	0.00	0.00	2.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................	22	1	3.00	1.00	0.00	0.00	1.00	1.00
...............................................................................................................TATTGCTTGAGAATGCACGTAG................................	22	1	3.00	1.00	1.00	0.00	1.00	0.00
...............................................................................................................TATTGCTTGATAATACACGTAG................................	22	1	3.00	0.00	1.00	1.00	1.00	0.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATCCACGTA.................................	21	1	3.00	0.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACGCGTAG................................	22	1	3.00	0.00	2.00	0.00	0.00	1.00

droEre2

TTAC-G-------GTGGCGA--------------------------------CTCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC-AT--CC-AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAA-TCAAAGGGG	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	5095.00	252.00	598.00	118.00	4127.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	1048.00	2.00	113.00	11.00	922.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	240.00	1.00	34.00	0.00	205.00
......................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................	23	1	100.00	18.00	7.00	5.00	70.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	81.00	6.00	8.00	11.00	56.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	58.00	10.00	6.00	1.00	41.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	54.00	0.00	12.00	0.00	42.00
...............................................................................................................TATTGCTTGATAATACACGTAG................................	22	1	41.00	2.00	1.00	2.00	36.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	37.00	2.00	1.00	0.00	34.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	34.00	1.00	5.00	1.00	27.00
...............................................................................................................TATTGCTTGAGAATACACTTAG................................	22	1	33.00	1.00	3.00	1.00	28.00
...............................................................................................................TATTTCTTGAGAATACACGTAG................................	22	1	24.00	3.00	0.00	0.00	21.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	23.00	0.00	5.00	0.00	18.00
......................................................................ACGTGTATGCTCGTAGCTATA..........................................................................	21	1	19.00	6.00	0.00	0.00	13.00
...............................................................................................................TATTGCTTGAGAATACAAGTAG................................	22	1	15.00	0.00	1.00	0.00	14.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	14.00	2.00	2.00	1.00	9.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	13.00	0.00	1.00	0.00	12.00
.................................................................................................................TTGCTTGAGAATACACGTAG................................	20	1	11.00	0.00	0.00	0.00	11.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	10.00	0.00	2.00	0.00	8.00
...............................................................................................................TACTGCTTGAGAATACACGTAG................................	22	1	10.00	0.00	1.00	1.00	8.00
...............................................................................................................TATTGCTTGAGAATACCCGTAG................................	22	1	9.00	0.00	3.00	0.00	6.00
..............................................................................................................TTATTGCTTGAGAATACACGTAG................................	23	1	9.00	0.00	1.00	0.00	8.00
...............................................................................................................TATTGCTTGAGAATACACCTAG................................	22	1	8.00	0.00	2.00	0.00	6.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	8.00	1.00	2.00	0.00	5.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	8.00	1.00	1.00	0.00	6.00
...............................................................................................................TATTGCTTGAGAATAAACGTAG................................	22	1	8.00	0.00	0.00	0.00	8.00
...............................................................................................................TATTGCTTGAGAATACATGTAG................................	22	1	8.00	1.00	0.00	0.00	7.00
...............................................................................................................TATTGCTTGAGAGTACACGTAG................................	22	1	8.00	1.00	1.00	0.00	6.00
...............................................................................................................TATCGCTTGAGAATACACGTAG................................	22	1	7.00	0.00	0.00	1.00	6.00
...............................................................................................................TATTGCTTGAAAATACACGTAG................................	22	1	7.00	1.00	1.00	0.00	5.00
...............................................................................................................TATTGATTGAGAATACACGTA.................................	21	1	7.00	0.00	0.00	0.00	7.00
...............................................................................................................TATTGCTTTAGAATACACGTA.................................	21	1	7.00	0.00	0.00	0.00	7.00
...............................................................................................................TATTGCTTGAGAATACACTTA.................................	21	1	7.00	0.00	1.00	0.00	6.00
...............................................................................................................TATTCCTTGAGAATACACGTAG................................	22	1	6.00	0.00	1.00	0.00	5.00
...............................................................................................................TATTGCTCGAGAATACACGTAG................................	22	1	6.00	1.00	1.00	0.00	4.00
...............................................................................................................TATTGCTTGAGAACACACGTAG................................	22	1	6.00	0.00	0.00	0.00	6.00
......................................................................ACGTGTATGCTCGTAGCTAT...........................................................................	20	1	6.00	0.00	1.00	0.00	5.00
...............................................................................................................TATTGCTTGGGAATACACGTAG................................	22	1	6.00	0.00	0.00	0.00	6.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	6.00	0.00	4.00	0.00	2.00
......................................................................ACGTGTATGCTCGTAGCTA............................................................................	19	1	6.00	0.00	0.00	0.00	6.00
...............................................................................................................TATTGCTTGATAATACACGTA.................................	21	1	6.00	0.00	0.00	0.00	6.00
...............................................................................................................TATTGCTTGAGAATCCACGTAG................................	22	1	5.00	2.00	0.00	1.00	2.00
...............................................................................................................TATTGCTTCAGAATACACGTAG................................	22	1	5.00	3.00	0.00	1.00	1.00
...............................................................................................................TAGTGCTTGAGAATACACGTAG................................	22	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................TATTGATTGAGAATACACGT..................................	20	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................TATTGCTTGAGGATACACGTA.................................	21	1	5.00	0.00	2.00	0.00	3.00
...............................................................................................................TATTGCCTGAGAATACACGTAG................................	22	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................TATTGCTTGAGAATACACGGAG................................	22	1	5.00	0.00	1.00	1.00	3.00
...............................................................................................................TATTTCTTGAGAATACACGTA.................................	21	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................GATTGCTTGAGAATACACGTAG................................	22	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	5.00	0.00	2.00	0.00	3.00
...............................................................................................................TATTGCTTGACAATACACGTAG................................	22	1	5.00	2.00	1.00	0.00	2.00
...............................................................................................................TAATGCTTGAGAATACACGTAG................................	22	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................TATTGCTTGAGAATACACGTG.................................	21	1	4.00	0.00	0.00	0.00	4.00
................................................................................................................ATTGCTTGAGAATACACGTAGT...............................	22	1	4.00	2.00	0.00	0.00	2.00
...............................................................................................................TATTGCTTGCGAATACACGTAG................................	22	1	4.00	0.00	1.00	1.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGCA.................................	21	1	4.00	0.00	3.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATAAACGTA.................................	21	1	4.00	0.00	0.00	0.00	4.00
...............................................................................................................CATTGCTTGAGAATACACGTAG................................	22	1	4.00	0.00	0.00	0.00	4.00
...................................................................................................................GCTTGAGAATACACGTAG................................	18	1	4.00	0.00	0.00	0.00	4.00
...............................................................................................................TATTGCTTGAGAATATACGTAG................................	22	1	4.00	0.00	1.00	0.00	3.00
...............................................................................................................TATTGCTTGAGCATACACGTAG................................	22	1	4.00	0.00	2.00	0.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	4.00	0.00	2.00	0.00	2.00
...............................................................................................................TATTGCTTGAGAATCCACGTA.................................	21	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................TATTGCTTGAGAATATACGTA.................................	21	1	3.00	0.00	1.00	0.00	2.00
...............................................................................................................TATTGCTTAAGAATACACGTAG................................	22	1	3.00	1.00	1.00	0.00	1.00
...............................................................................................................TATTGCTTTATAATACACGTAG................................	22	1	3.00	0.00	1.00	1.00	1.00
...............................................................................................................TATTGCTTGTGAATACACGTAG................................	22	1	3.00	0.00	1.00	0.00	2.00
..............................................................................................................TTATTGCTTGAGAATACACG...................................	20	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................TATTxCTTGAGAATACACGTAG................................	21	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................TATTGCTTxAGAATACACGTAG................................	21	1	3.00	0.00	0.00	0.00	3.00
..............................................................................................................CTATTGCTTGAGAATACACGTA.................................	22	1	3.00	0.00	1.00	0.00	2.00
...............................................................................................................TATTGCTTGAGxATACACGTAG................................	21	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................TATGGCTTGAGAATACACGTAG................................	22	1	3.00	0.00	1.00	0.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGTAGAA..............................	24	1	3.00	0.00	1.00	0.00	2.00
...............................................................................................................TATTGCTCGAGAATACACGTA.................................	21	1	3.00	0.00	0.00	0.00	3.00

droAna3

TTAA-A-------GTGGCAA-------------------------------CCTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA-ATGCG-AAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAA-TCGAAGTGG	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	2478.00	512.00	1289.00	637.00	40.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	418.00	85.00	214.00	117.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	191.00	50.00	78.00	63.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	104.00	38.00	45.00	18.00	3.00
......................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................	23	1	50.00	2.00	42.00	4.00	2.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	44.00	6.00	24.00	14.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	41.00	10.00	23.00	7.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	24.00	2.00	12.00	9.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	12.00	3.00	5.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTT.................................	21	1	11.00	1.00	8.00	2.00	0.00
...............................................................................................................TATTTCTTGAGAATACACGTAG................................	22	1	11.00	4.00	6.00	1.00	0.00
................................................................................................................ATTGCTTGAGAATACACGT..................................	19	1	11.00	2.00	7.00	2.00	0.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	11.00	0.00	8.00	3.00	0.00
...............................................................................................................TAGTGCTTGAGAATACACGTAG................................	22	1	10.00	0.00	10.00	0.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	9.00	3.00	3.00	2.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	9.00	1.00	0.00	7.00	1.00
..............................................................................................................TTATTGCTTGAGAATACACGT..................................	21	1	8.00	3.00	2.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	7.00	1.00	4.00	2.00	0.00
...............................................................................................................TATTGCTTGATAATACACGTAG................................	22	1	7.00	0.00	7.00	0.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGTAG................................	22	1	7.00	4.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	7.00	2.00	2.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACTTAG................................	22	1	6.00	1.00	5.00	0.00	0.00
...............................................................................................................TATTGCTTGGGAATACACGTAG................................	22	1	5.00	2.00	2.00	1.00	0.00
...............................................................................................................TACTGCTTGAGAATACACGTAG................................	22	1	5.00	0.00	4.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACATAG................................	22	1	5.00	0.00	3.00	2.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATA..........................................................................	21	1	5.00	0.00	3.00	1.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGGAG................................	22	1	5.00	0.00	0.00	4.00	1.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	5.00	0.00	3.00	2.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACGTA.................................	22	1	5.00	1.00	4.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	5.00	0.00	1.00	4.00	0.00
...............................................................................................................GATTGCTTGAGAATACACGTAG................................	22	1	4.00	0.00	1.00	2.00	1.00
......................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAGTT..............................	22	1	4.00	0.00	3.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAGTT..............................	24	1	4.00	2.00	0.00	2.00	0.00
...............................................................................................................TATGGCTTGAGAATACACGTAG................................	22	1	4.00	0.00	0.00	4.00	0.00
...............................................................................................................TATTGCTTGAAAATACACGTAG................................	22	1	4.00	1.00	3.00	0.00	0.00
...............................................................................................................TATTGATTGAGAATACACGTA.................................	21	1	4.00	0.00	3.00	1.00	0.00
...............................................................................................................TATCGCTTGAGAATACACGTAG................................	22	1	4.00	1.00	1.00	2.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACGTAG................................	23	1	4.00	0.00	3.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	4.00	1.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGATTACACGTAG................................	22	1	3.00	2.00	0.00	1.00	0.00
...............................................................................................................TAGTGCTTGAGAATACACGTAT................................	22	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATATACGTAG................................	22	1	3.00	3.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACTCGTAG................................	22	1	3.00	0.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTATT...............................	23	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACGCGTAG................................	22	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAGTACACGTAG................................	22	1	3.00	1.00	2.00	0.00	0.00
...............................................................................................................TAGTGCTTGAGAATACACGTA.................................	21	1	3.00	0.00	2.00	1.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTA.................................	20	1	3.00	1.00	2.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTTG................................	22	1	3.00	2.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTCAGAATACACGTAG................................	22	1	3.00	0.00	3.00	0.00	0.00

dp4

TTAA-G-------ATGACAGCGACGGCC-----AAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT-AT--CCGAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAACTGA	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	1545.00	340.00	437.00	767.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	186.00	47.00	14.00	125.00	0.00
......................................................................ACGTGTATACTCATAGCTATAAC........................................................................	23	1	87.00	0.00	82.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	73.00	12.00	1.00	60.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	41.00	14.00	11.00	16.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTA.................................	20	1	20.00	6.00	0.00	14.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTAGT...............................	22	1	20.00	1.00	5.00	14.00	0.00
.....................................................................CACGTGTATACTCATAGCTATAA.........................................................................	23	1	13.00	3.00	8.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	9.00	0.00	1.00	8.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	9.00	2.00	2.00	5.00	0.00
................................................................................................................ATTGCTTGAGAATACACGT..................................	19	1	8.00	1.00	0.00	7.00	0.00
...............................................................................................................TAGTGCTTGAGAATACACGTAG................................	22	1	6.00	0.00	1.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACCCGTAG................................	22	1	5.00	1.00	1.00	3.00	0.00
......................................................................ACGTGTATACTCATAGCTATAA.........................................................................	22	1	5.00	0.00	4.00	1.00	0.00
......................................................................ACGTGTATACTCATAGCTATA..........................................................................	21	1	5.00	0.00	3.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	5.00	2.00	0.00	3.00	0.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	4.00	0.00	4.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	4.00	0.00	2.00	2.00	0.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	4.00	1.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	4.00	0.00	0.00	3.00	1.00
.....................................................................CACGTGTATACTCATAGCTATA..........................................................................	22	1	4.00	0.00	4.00	0.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAGTT..............................	22	1	4.00	2.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	4.00	0.00	2.00	2.00	0.00
..............................................................................................................CTATTGCTTGAGAATACACGTAG................................	23	1	4.00	0.00	4.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	4.00	0.00	2.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATGCACGTAG................................	22	1	3.00	1.00	0.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCA.................................	21	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	3.00	0.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGTGAATACACGTAG................................	22	1	3.00	0.00	3.00	0.00	0.00
...............................................................................................................TATTGCTTGAGACTACACGTAG................................	22	1	3.00	1.00	2.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACAAGTAG................................	22	1	3.00	0.00	0.00	3.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAG................................	20	1	3.00	1.00	0.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACGCGTAG................................	22	1	3.00	0.00	1.00	2.00	0.00

droPer1

TTAA-G-------ATGACAGCGACGGCCACGCCACGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT-AT--CCGAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAA-TCAAACTGA	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	1823.00	302.00	89.00	638.00	770.00	24.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	370.00	20.00	2.00	147.00	201.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	161.00	7.00	2.00	64.00	88.00	0.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	66.00	0.00	0.00	1.00	3.00	62.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	53.00	11.00	1.00	19.00	22.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTA.................................	20	1	36.00	2.00	0.00	16.00	18.00	0.00
................................................................................................................ATTGCTTGAGAATACACGT..................................	19	1	20.00	0.00	0.00	7.00	13.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTAGT...............................	22	1	17.00	0.00	0.00	12.00	5.00	0.00
......................................................................ACGTGTATACTCATAGCTATAAC........................................................................	23	1	16.00	0.00	5.00	2.00	0.00	9.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	16.00	0.00	0.00	8.00	8.00	0.00
.....................................................................CACGTGTATACTCATAGCTATAA.........................................................................	23	1	16.00	0.00	1.00	5.00	7.00	3.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	14.00	0.00	0.00	4.00	8.00	2.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	13.00	0.00	1.00	4.00	8.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	12.00	1.00	0.00	6.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	8.00	0.00	0.00	5.00	3.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACGTAG................................	23	1	8.00	1.00	0.00	0.00	7.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGGAG................................	22	1	8.00	0.00	0.00	0.00	8.00	0.00
...............................................................................................................TATTGCTTGAGAATACACCTAG................................	22	1	7.00	0.00	0.00	2.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	7.00	0.00	1.00	4.00	2.00	0.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	7.00	1.00	0.00	5.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	7.00	0.00	0.00	1.00	6.00	0.00
.....................................................................CACGTGTATACTCATAGCTAT...........................................................................	21	1	6.00	0.00	0.00	2.00	4.00	0.00
...............................................................................................................TATGGCTTGAGAATACACGTAG................................	22	1	6.00	0.00	0.00	0.00	6.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGTA.................................	21	1	6.00	0.00	0.00	1.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACACTTAG................................	22	1	5.00	1.00	1.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	5.00	0.00	0.00	1.00	4.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTGGT...............................	22	1	5.00	0.00	0.00	3.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGGA.................................	21	1	5.00	0.00	0.00	1.00	4.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGTAG................................	22	1	4.00	0.00	0.00	1.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCA.................................	21	1	4.00	0.00	1.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTTG................................	22	1	4.00	0.00	1.00	0.00	3.00	0.00
.....................................................................CACGTGTATACTCATAGCTATA..........................................................................	22	1	4.00	0.00	2.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGATTACACGTAG................................	22	1	4.00	0.00	0.00	0.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	4.00	0.00	1.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACCCGTAG................................	22	1	4.00	0.00	0.00	2.00	2.00	0.00
...............................................................................................................TATTGCTTCAGAATACACGTAG................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGT..................................	20	1	3.00	0.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGGGAATACACGTAG................................	22	1	3.00	0.00	0.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACATAG................................	22	1	3.00	1.00	0.00	1.00	1.00	0.00
.....................................................................CACGTGTATACTCATAGCT.............................................................................	19	1	3.00	0.00	0.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGTATACACGTAG................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTAAGAATACACGTAG................................	22	1	3.00	0.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGAAG................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCGTGAGAATACACGTA.................................	21	1	3.00	0.00	0.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGTGAATACACGTAG................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAG................................	20	1	3.00	0.00	1.00	0.00	2.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAGTT..............................	22	1	3.00	0.00	0.00	3.00	0.00	0.00
...............................................................................................................TAGTGCTTGAGAATACACGTAG................................	22	1	3.00	0.00	0.00	1.00	2.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTT.................................	20	1	3.00	0.00	0.00	0.00	3.00	0.00

droWil1

TT------------------------------------------------------------TAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT-ATACA-AAATGTTATTGCTTGAGAATACACGTAGTT-AACTAGATTCGTTCAACGG-GTCAAACAA	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	3637.00	178.00	1404.00	1917.00	138.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	353.00	23.00	68.00	261.00	1.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	306.00	0.00	0.00	4.00	302.00
......................................................................ACGTGTATTCTTATAGCTGTAAC........................................................................	23	1	134.00	1.00	28.00	6.00	99.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	107.00	5.00	6.00	78.00	18.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	95.00	16.00	5.00	72.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	47.00	5.00	32.00	9.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	17.00	4.00	8.00	4.00	1.00
......................................................................ACGTGTATTCTTATAGCTGTA..........................................................................	21	1	14.00	0.00	1.00	1.00	12.00
..............................................................................................................TTATTGCTTGAGAATACACGTAG................................	23	1	13.00	0.00	2.00	11.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	11.00	1.00	4.00	6.00	0.00
...............................................................................................................TATTGCTTGAGAATACACTTAG................................	22	1	11.00	1.00	4.00	5.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	10.00	0.00	0.00	9.00	1.00
...............................................................................................................TATCGCTTGAGAATACACGTAG................................	22	1	10.00	1.00	3.00	6.00	0.00
...............................................................................................................TATTGCTTGAGAATACACATAG................................	22	1	9.00	0.00	3.00	5.00	1.00
......................................................................ACGTGTATTCTTATAGCTGTAA.........................................................................	22	1	9.00	0.00	1.00	1.00	7.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	8.00	0.00	1.00	7.00	0.00
...............................................................................................................TATTGCTTGAGAGTACACGTAG................................	22	1	8.00	0.00	4.00	4.00	0.00
...............................................................................................................TATTGCTTGAAAATACACGTAG................................	22	1	7.00	0.00	1.00	5.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGAAG................................	22	1	7.00	1.00	0.00	5.00	1.00
...............................................................................................................TATTGCTTAAGAATACACGTAG................................	22	1	6.00	0.00	4.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	6.00	1.00	2.00	3.00	0.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	6.00	0.00	5.00	1.00	0.00
...............................................................................................................CATTGCTTGAGAATACACGTAG................................	22	1	6.00	0.00	0.00	6.00	0.00
...............................................................................................................TATTTCTTGAGAATACACGTAG................................	22	1	6.00	1.00	2.00	3.00	0.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	5.00	0.00	1.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATGCACGTAG................................	22	1	5.00	0.00	0.00	4.00	1.00
...............................................................................................................TATTGCTTGAGCATACACGTAG................................	22	1	5.00	1.00	1.00	3.00	0.00
...............................................................................................................AATTGCTTGAGAATACACGTAG................................	22	1	5.00	0.00	0.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACGCGTAG................................	22	1	5.00	0.00	1.00	3.00	1.00
..............................................................................................................CTATTGCTTGAGAATACACGTAG................................	23	1	5.00	1.00	1.00	3.00	0.00
......................................................................ACGTGTATTCTTATAGCTGT...........................................................................	20	1	5.00	0.00	0.00	0.00	5.00
...............................................................................................................TATTGCTTGAGAATAAACGTAG................................	22	1	5.00	0.00	1.00	4.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAG................................	20	1	4.00	0.00	0.00	4.00	0.00
...............................................................................................................TATTGCCTGAGAATACACGTAG................................	22	1	4.00	1.00	2.00	1.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACGTA.................................	22	1	4.00	0.00	1.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTG.................................	21	1	4.00	1.00	0.00	3.00	0.00
...............................................................................................................TATTGCTTGAGAACACACGTAG................................	22	1	4.00	0.00	1.00	3.00	0.00
...............................................................................................................TATTGCTTGAGACTACACGTAG................................	22	1	4.00	1.00	0.00	3.00	0.00
...............................................................................................................GATTGCTTGAGAATACACGTAG................................	22	1	4.00	0.00	0.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	4.00	1.00	0.00	3.00	0.00
...............................................................................................................TATTxCTTGAGAATACACGTAG................................	21	1	4.00	0.00	2.00	2.00	0.00
......................................................................ACGTGTATTCTTATAGCTG............................................................................	19	1	4.00	0.00	0.00	0.00	4.00
...............................................................................................................TATTGCTTGAGAATCCACGTAG................................	22	1	4.00	0.00	1.00	3.00	0.00
...............................................................................................................TACTGCTTGAGAATACACGTAG................................	22	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGCGAATACACGTAG................................	22	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATATACGTAG................................	22	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGTTTGAGAATACACGTAG................................	22	1	3.00	1.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTCAGAATACACGTAG................................	22	1	3.00	0.00	1.00	2.00	0.00
..............................................................................................................TTATTGCTTGAGAATACACG...................................	20	1	3.00	0.00	0.00	0.00	3.00
...............................................................................................................TATTCCTTGAGAATACACGTAG................................	22	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTCGAGAATACACGTAG................................	22	1	3.00	0.00	0.00	3.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAGTT-.............................	22	1	3.00	0.00	0.00	3.00	0.00
......................................................................ACGTGTATTCTTATAGCTGTAACC.......................................................................	24	1	3.00	0.00	0.00	0.00	3.00

droVir3

GGAG-CAGACACGACAGCG------GAC-----ACAACAAT-----TGGAAATTGGAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACA-ATC-AAATGTTATTGCTTGAGAATACACGTAGTT-AACAAGATTCTCTCAACGA-TCCAATAAA	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	1132.00	353.00	601.00	118.00	3.00	57.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	450.00	83.00	354.00	11.00	0.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	189.00	23.00	163.00	0.00	0.00	3.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	96.00	1.00	5.00	0.00	3.00	87.00
......................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................	23	1	41.00	1.00	15.00	5.00	3.00	17.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	23.00	1.00	11.00	11.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	16.00	1.00	12.00	0.00	0.00	3.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	12.00	0.00	11.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	10.00	2.00	8.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	9.00	0.00	9.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	9.00	3.00	5.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCA.................................	21	1	8.00	1.00	7.00	0.00	0.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTAGT...............................	22	1	6.00	1.00	5.00	0.00	0.00	0.00
.....................................................................CACGTGTATGCTCGTAGCT.............................................................................	19	1	6.00	0.00	4.00	0.00	0.00	2.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	5.00	1.00	2.00	0.00	0.00	2.00
...............................................................................................................TATTGCTTGATAATACACGTAG................................	22	1	5.00	0.00	3.00	2.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGC..................................	20	1	5.00	0.00	5.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	5.00	0.00	5.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTTG................................	22	1	4.00	0.00	4.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTT.................................	21	1	4.00	1.00	3.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGGAG................................	22	1	4.00	0.00	3.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	4.00	0.00	3.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGGGAATACACGTAG................................	22	1	3.00	1.00	2.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACCTAG................................	22	1	3.00	0.00	3.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATCCACGTAG................................	22	1	3.00	1.00	1.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGACTACACGTAG................................	22	1	3.00	0.00	1.00	2.00	0.00	0.00
...............................................................................................................TATTGCTTGGGAATACACGTA.................................	21	1	3.00	0.00	3.00	0.00	0.00	0.00

droMoj3

GGAG-T-------GTGGACA-----------------CAAT-----TGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACA-ATC-AAATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACAT-GGCAATGGC	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	3540.00	952.00	1654.00	800.00	134.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	708.00	141.00	378.00	189.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	348.00	70.00	192.00	86.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	90.00	37.00	28.00	21.00	4.00
...G-T-------GTGCACA-----------------CGAT-----TGGAAAT................................................................................................................	20	1	79.00	79.00	0.00	0.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................	23	1	55.00	3.00	20.00	12.00	20.00
...............................................................................................................TATTGCTTGAGAATACACGTAT................................	22	1	37.00	8.00	18.00	11.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	27.00	12.00	10.00	4.00	1.00
...G-T-------GTGCACA-----------------CGAT-----TGGAAA.................................................................................................................	19	1	26.00	26.00	0.00	0.00	0.00
................................................................................................................ATTGCTTGAGAATACACGTAG................................	21	1	19.00	2.00	10.00	7.00	0.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	15.00	1.00	3.00	11.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGTAG................................	22	1	14.00	1.00	1.00	12.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	14.00	1.00	7.00	5.00	1.00
.....T-------GTGCACA-----------------CGAT-----TGGAAAT................................................................................................................	19	1	12.00	12.00	0.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACG...................................	19	1	11.00	1.00	6.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTT.................................	21	1	10.00	3.00	5.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTCG................................	22	1	10.00	0.00	2.00	8.00	0.00
...............................................................................................................TATTGCTTGAGAATACCCGTAG................................	22	1	9.00	1.00	3.00	4.00	1.00
...............................................................................................................TAGTGCTTGAGAATACACGTAG................................	22	1	8.00	0.00	6.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGCAG................................	22	1	8.00	0.00	5.00	3.00	0.00
...............................................................................................................TGTTGCTTGAGAATACACGTAG................................	22	1	7.00	1.00	4.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACCCGT..................................	20	1	7.00	0.00	0.00	7.00	0.00
...............................................................................................................TATTGCTGGAGAATACACGTAG................................	22	1	7.00	0.00	6.00	1.00	0.00
...............................................................................................................CATTGCTTGAGAATACACGTAG................................	22	1	6.00	1.00	5.00	0.00	0.00
...............................................................................................................TATTGCTTGATAATACACGTAG................................	22	1	6.00	0.00	0.00	6.00	0.00
...............................................................................................................TATTGCTTTAGAATACACGTA.................................	21	1	6.00	1.00	2.00	3.00	0.00
...............................................................................................................TATTGCTTGAGACTACACGTAG................................	22	1	6.00	0.00	1.00	5.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAA................................	22	1	6.00	0.00	4.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACTTAG................................	22	1	6.00	3.00	1.00	2.00	0.00
.............GTGCACA-----------------CGAT-----TGGAAAT................................................................................................................	18	1	6.00	6.00	0.00	0.00	0.00
...............................................................................................................TATTGATTGAGAATACACGTAG................................	22	1	6.00	0.00	5.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACATGTAG................................	22	1	6.00	4.00	0.00	2.00	0.00
...............................................................................................................TATTGCTTGAGGATACACGTAG................................	22	1	5.00	0.00	5.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTTG................................	22	1	5.00	0.00	3.00	2.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGTA.................................	21	1	5.00	0.00	1.00	4.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGTT-.............................	24	1	5.00	3.00	1.00	0.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGAAG................................	22	1	5.00	0.00	5.00	0.00	0.00
...............................................................................................................TATTGCTTGAGATTACACGTAG................................	22	1	5.00	0.00	4.00	1.00	0.00
...............................................................................................................TATTGCTTTAGAATACACGT..................................	20	1	5.00	0.00	2.00	3.00	0.00
.................................................................................................................TTGCTTGAGAATACACGTAG................................	20	1	5.00	3.00	2.00	0.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATA..........................................................................	21	1	5.00	0.00	2.00	0.00	3.00
...............................................................................................................TATTGCTTGAGAATACACGTAC................................	22	1	5.00	1.00	2.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACCCGTA.................................	21	1	5.00	0.00	0.00	5.00	0.00
...............................................................................................................TATTGCCTGAGAATACACGTAG................................	22	1	4.00	1.00	1.00	1.00	1.00
...............................................................................................................TATTACTTGAGAATACACGTAG................................	22	1	4.00	0.00	4.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATACACATAG................................	22	1	4.00	1.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATGCACGTAG................................	22	1	4.00	0.00	2.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGGAG................................	22	1	4.00	0.00	4.00	0.00	0.00
......................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................	22	1	4.00	0.00	2.00	1.00	1.00
...............................................................................................................TATTGCTTGAGAATACACCTAG................................	22	1	4.00	0.00	2.00	1.00	1.00
...............................................................................................................TATTGCTCGAGAATACACGTAG................................	22	1	4.00	0.00	0.00	4.00	0.00
...............................................................................................................TACTGCTTGAGAATACACGTAG................................	22	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGCATACACGT..................................	20	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTCAGAATACACGTA.................................	21	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGTAGC...............................	23	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAGTACACGTA.................................	21	1	3.00	1.00	2.00	0.00	0.00
...............................................................................................................TAGTGCTTGAGAATACACGTTG................................	22	1	3.00	0.00	1.00	2.00	0.00
...............................................................................................................TATTGCTTGCGAATACACGTAG................................	22	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGGGAATACACGTAG................................	22	1	3.00	1.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAGTACACGTAG................................	22	1	3.00	0.00	1.00	1.00	1.00
...............................................................................................................TATTGCTTGAGAATTCACGTAG................................	22	1	3.00	2.00	1.00	0.00	0.00
...............................................................................................................TATTGCTTGAGAATCCACGTA.................................	21	1	3.00	0.00	3.00	0.00	0.00
................................................................................................................ATTGCTTGAGAATACACGT..................................	19	1	3.00	1.00	0.00	2.00	0.00
...G-T-------GTGCACA-----------------CGAT-----TGGAA..................................................................................................................	18	1	3.00	3.00	0.00	0.00	0.00
...............................................................................................................TATTGTTTGAGAATACACGTAG................................	22	1	3.00	1.00	1.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATACACGGAC................................	22	1	3.00	0.00	2.00	1.00	0.00
...............................................................................................................TATTGCTTGAGAATCCACGTAG................................	22	1	3.00	1.00	1.00	1.00	0.00

droGri2

GGAG-A-------TTGGAAA-------------------------------ATTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACA-ATC-AAATGTTATTGCTTGAGAATACACGTAGTT-AACAAGATTGCCTCAACGACTCCAATAAC	Size	Hit Count	Total Norm	V109 Male body
...............................................................................................................TATTGCTTGAGAATACACGTAG................................	22	1	46.00	46.00
...............................................................................................................TATTGCTTGAGAATACACGTA.................................	21	1	12.00	12.00
...............................................................................................................TATTGCTTGAGAATACACGT..................................	20	1	6.00	6.00
...............................................................................................................TATTGCTTGAGAATACATGTAG................................	22	1	2.00	2.00
...............................................................................................................TATTGCTTGAGAATACAAGTAG................................	22	1	1.00	1.00
...............................................................................................................TATTGCTTTAGAATACACGTAG................................	22	1	1.00	1.00
...............................................................................................................TATTGCTTGAGAATACAGGTAG................................	22	1	1.00	1.00
...............................................................................................................TATTGCTCGAGAATACACGTAG................................	22	1	1.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAGA...............................	23	1	1.00	1.00
...............................................................................................................TAATGCTTGAGAATACACGTA.................................	21	1	1.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTGG................................	22	1	1.00	1.00
...............................................................................................................TATTGCTTGAGAATACACGTAGT...............................	23	1	1.00	1.00

12-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droAna3	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image