dme-mir-1000- Best orthologs

dme-mir-1000	chr3R:21414581-21414680 -	Known_mirbase
[View on miRBase]	[View on UCSC Genome Browser {Cornell Mirror}]	antisense_to_intron

Legend:

   mature strand at position 21414646-21414666
   star strand at position 21414600-21414621
   mutations
   read mismatches

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Species	Coordinate	Source	Confidence	Alignment
dm3	chr3R:21414566-21414695 -		1	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droSim1	chr3R:21243636-21243765 -	LASTZ	1	TATACC-GTG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droSec1	super_13:202504-202633 -	LASTZ	1	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droYak2	chr3R:25064545-25064667 +	LASTZ	1	---------G----A------------ATTG-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCC-------------------------------------------------------------------A-------------------G-
droEre2	scaffold_4820:6627814-6627943 +	LASTZ	1	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTC-------------------------------------------------------------------A-------------------G-
droEug1	scf7180000409798:1136852-1136983 +	LASTZ	4	TATGCC-ACA----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------TGGCGGCA-------------------------------------------------------------------A-------------------G-
droBia1	scf7180000302136:2260816-2260952 -	LASTZ	4	TACATCCATC----G------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-
droTak1	scf7180000415257:294611-294745 -	LASTZ	4	TGTAC--ACA----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-
droEle1	scf7180000491280:3122819-3122940 -	LASTZ	4	TACACT-ACG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG---------------------------------------------------------------------------------------------------------
droRho1	scf7180000779501:511380-511509 +	LASTZ	4	TATGTC-ACG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCC-------------------------------------------------------------------A-------------------G-
droFic1	scf7180000454055:1331162-1331296 -	LASTZ	4	TATTCC-ATG----G------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAAA-ACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-
droKik1	scf7180000302639:1623489-1623623 +	LASTZ	4	TATATC-GCGC---A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CAGCGGAA----------------------------AACTCC-------------------------------------------------------
droAna3	scaffold_13340:3670416-3670527 -	LASTZ	1	TA--------------------------------------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG----------------------------------------------------------------------------------A-------------------G-
droBip1	scf7180000396712:682201-682324 +	LASTZ	4	TATACC-GTC----A------------TAT--------------A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG----------------------------------------------------------------------------------A-------------------G-
dp4	chr2:21158113-21158302 -	LASTZ	1	TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGAAGGAGAAGCTACAAAGCTACAAAGCTACGGAAAAATGCTAC------------------------------A-------------------G-
droPer1	super_3:3932619-3932791 -	LASTZ	1	TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGCTACA-----------------AAGCTACGGAAAAATGCTAC------------------------------A-------------------G-
droWil1	scaffold_181130:14638697-14638859 +	LASTZ	1	TCCATC-TAA----C------------AAAA-------------G-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CGGAAAAC-------------------------------TCT-ACTTCTGATGATGATAATAATGATTCAAGTCAA-------------------A-
droVir3	scaffold_12855:6810247-6810376 -	LASTZ	1	TATATC-GTC----G-------------ATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAA-A-----AGCCAGAA-------------------------------------------------------------------A-------------------A-
droMoj3	scaffold_6540:25791543-25791693 +	LASTZ	1	TCTATT-AT-------------------------------------AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGA--------AGAAATC-------------------------------TA-------------------------ATCGAGTCGACTATGCGGCATACACAGAGG-
droGri2	scaffold_14906:2964690-2964824 -	LASTZ	1	TATATT--------T------------AATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGC-------------------------------------------------------------------A-------------------GC

Legend

0- The ortholog is absent. A better synthenic sequence candidate could not be found.
1- Reads w/ good pileup on mature and star strand & folds into hairpin structure.
2- Reads w/ good pileup on mature and star strand BUT does not fold into hairpin structure.
3- Sporadic reads & folds into a hairpin structure.
4- No reads but folds into a hairpin structure.
5- Ortholog is confident but miRNA appears absent (no reads and does not fold into a hairpin)

Re-alignment after removal of non-confident orthologs

Species	Alignment
dm3	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droSim1	TATACC-GTG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droSec1	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-
droYak2	---------G----A------------ATTG-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCC-------------------------------------------------------------------A-------------------G-
droEre2	TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTC-------------------------------------------------------------------A-------------------G-
droEug1	TATGCC-ACA----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------TGGCGGCA-------------------------------------------------------------------A-------------------G-
droBia1	TACATCCATC----G------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-
droTak1	TGTAC--ACA----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-
droEle1	TACACT-ACG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG---------------------------------------------------------------------------------------------------------
droRho1	TATGTC-ACG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCC-------------------------------------------------------------------A-------------------G-
droFic1	TATTCC-ATG----G------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAAA-ACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-
droKik1	TATATC-GCGC---A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CAGCGGAA----------------------------AACTCC-------------------------------------------------------
droAna3	TA--------------------------------------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG----------------------------------------------------------------------------------A-------------------G-
droBip1	TATACC-GTC----A------------TAT--------------A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG----------------------------------------------------------------------------------A-------------------G-
dp4	TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGAAGGAGAAGCTACAAAGCTACAAAGCTACGGAAAAATGCTAC------------------------------A-------------------G-
droPer1	TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGCTACA-----------------AAGCTACGGAAAAATGCTAC------------------------------A-------------------G-
droWil1	TCCATC-TAA----C------------AAAA-------------G-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CGGAAAAC-------------------------------TCT-ACTTCTGATGATGATAATAATGATTCAAGTCAA-------------------A-
droVir3	TATATC-GTC----G-------------ATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAA-A-----AGCCAGAA-------------------------------------------------------------------A-------------------A-
droMoj3	TCTATT-AT-------------------------------------AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGA--------AGAAATC-------------------------------TA-------------------------ATCGAGTCGACTATGCGGCATACACAGAGG-
droGri2	TATATT--------T------------AATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGC-------------------------------------------------------------------A-------------------GC

20-way Secondary Structure

	dm3	droSim1	droSec1	droYak2	droEre2	droEug1	droBia1	droTak1	droEle1	droRho1	droFic1	droKik1	droAna3	droBip1	dp4	droPer1	droWil1	droVir3	droMoj3	droGri2
RNAfold Image
UNAFold Image

Small RNA-seq read pileup

Species

Alignment

droSim1

TATACC-GTG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-	Size	Hit Count	Total Norm	V044 Embryo	M023 Head	M024 Male body	M025 Embryo
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	18445.00	20.00	17787.00	335.00	303.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	8976.00	4519.00	2880.00	59.00	1518.00
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	6141.00	1421.00	4390.00	106.00	224.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	503.00	0.00	495.00	6.00	2.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	487.00	1.00	471.00	9.00	6.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	487.00	0.00	458.00	10.00	19.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	444.00	5.00	388.00	16.00	35.00
............................................................ATATTGTCCTGTCACAGCAC..................................................................................................................................................................................	20	1	359.00	0.00	352.00	2.00	5.00
...........................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................	22	1	173.00	82.00	17.00	0.00	74.00
............................................................ATATTGTCCTGTCACAGCGG..................................................................................................................................................................................	20	1	93.00	0.00	84.00	6.00	3.00
...........................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................	21	1	93.00	18.00	13.00	1.00	61.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	88.00	15.00	69.00	2.00	2.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	73.00	54.00	19.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCCGTA................................................................................................................................................................................	22	1	35.00	35.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCAGGA................................................................................................................................................................................	22	1	31.00	20.00	4.00	0.00	7.00
............................................................ATATTGCCCTGTCACAGCAG..................................................................................................................................................................................	20	1	28.00	0.00	27.00	0.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	28.00	6.00	19.00	0.00	3.00
............................................................ATATTGTCCTGCCACAGCAG..................................................................................................................................................................................	20	1	28.00	0.00	27.00	0.00	1.00
............................................................ATATTTTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	24.00	0.00	22.00	1.00	1.00
............................................................ATATTGTCCTTTCACAGCAGTA................................................................................................................................................................................	22	1	22.00	3.00	9.00	0.00	10.00
............................................................ATATTGTCCTGTCACGGCAG..................................................................................................................................................................................	20	1	22.00	0.00	22.00	0.00	0.00
............................................................ATATTGTCCCGTCACAGCAG..................................................................................................................................................................................	20	1	21.00	0.00	21.00	0.00	0.00
............................................................ATATTGTCCTTTCACAGCAG..................................................................................................................................................................................	20	1	21.00	0.00	18.00	0.00	3.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	20.00	20.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCT...................................................................................................................................................................................	19	1	19.00	0.00	19.00	0.00	0.00
............................................................ATATTGTCCTGTCACCGCAGTA................................................................................................................................................................................	22	1	19.00	18.00	1.00	0.00	0.00
............................................................ATATTGTCATGTCACAGCAGTA................................................................................................................................................................................	22	1	19.00	18.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	19.00	9.00	9.00	1.00	0.00
...........................................................................................................CTGCTGGGTCGGGGCATT.....................................................................................................................................	18	1	18.00	0.00	12.00	2.00	4.00
.............................................................TATTGTCCTGTCACAGCAG..................................................................................................................................................................................	19	1	18.00	0.00	17.00	1.00	0.00
............................................................ATATTGGCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	17.00	16.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	17.00	2.00	13.00	2.00	0.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	16.00	2.00	13.00	1.00	0.00
............................................................ATATTGTCCTGGCACAGCAG..................................................................................................................................................................................	20	1	16.00	0.00	16.00	0.00	0.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	16.00	11.00	5.00	0.00	0.00
............................................................ATATTGTCCxxTCACAGCAG..................................................................................................................................................................................	18	1	16.00	0.00	16.00	0.00	0.00
............................................................ATATTGTCCTGTCGCAGCAG..................................................................................................................................................................................	20	1	16.00	0.00	16.00	0.00	0.00
............................................................ATATTGTACTGTCACAGCAGTA................................................................................................................................................................................	22	1	14.00	14.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCG...................................................................................................................................................................................	19	1	13.00	0.00	13.00	0.00	0.00
............................................................ATATTGTCCxxTCACAGCAGT.................................................................................................................................................................................	19	1	13.00	0.00	13.00	0.00	0.00
............................................................ATATTCTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	12.00	0.00	11.00	0.00	1.00
............................................................ATATTGTCCTGTCGCAGCAGTA................................................................................................................................................................................	22	1	12.00	6.00	4.00	0.00	2.00
............................................................ATATTGTCCxxTCACAGCAGTA................................................................................................................................................................................	20	1	12.00	0.00	8.00	0.00	4.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	12.00	4.00	4.00	0.00	4.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	12.00	0.00	12.00	0.00	0.00
............................................................ATATTGTCCTGGCACAGCAGTA................................................................................................................................................................................	22	1	12.00	8.00	4.00	0.00	0.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	11.00	0.00	11.00	0.00	0.00
............................................................ATATTGTCCCGTCACAGCAGTA................................................................................................................................................................................	22	1	11.00	5.00	6.00	0.00	0.00
............................................................ATATTGCCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	11.00	6.00	1.00	0.00	4.00
.................................................................................................................................TTGTTGAGCGTCATTAGCAAC............................................................................................................	21	1	11.00	0.00	8.00	0.00	3.00
.................................................................................................................................TTGTTGAGCGTCATTAGC...............................................................................................................	18	1	11.00	0.00	8.00	0.00	3.00
............................................................ATATTGTCCTGTCACGGCAGTA................................................................................................................................................................................	22	1	11.00	7.00	2.00	0.00	2.00
............................................................ATATTGGCCTGTCACAGCAG..................................................................................................................................................................................	20	1	11.00	0.00	11.00	0.00	0.00
............................................................ATATCGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	10.00	0.00	10.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	10.00	7.00	2.00	0.00	1.00
............................................................ATATTGTCCTGTCATAGCAGTA................................................................................................................................................................................	22	1	10.00	8.00	1.00	0.00	1.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	10.00	1.00	8.00	0.00	1.00
.............................................................TATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	21	1	9.00	4.00	3.00	0.00	2.00
............................................................ATATTGTCCTGTCACAGCAA..................................................................................................................................................................................	20	1	9.00	0.00	8.00	0.00	1.00
............................................................ATATTGTCTTGTCACAGCAG..................................................................................................................................................................................	20	1	9.00	0.00	9.00	0.00	0.00
............................................................GTATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	9.00	0.00	9.00	0.00	0.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	9.00	2.00	7.00	0.00	0.00
............................................................ATATTGTCCTxTCACAGCAGTA................................................................................................................................................................................	21	1	9.00	0.00	6.00	0.00	3.00
............................................................ATATTGTCCTGTTACAGCAG..................................................................................................................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
............................................................ATATTGTCCTGTTACAGCAGTA................................................................................................................................................................................	22	1	8.00	7.00	0.00	0.00	1.00
............................................................ATATTATCCTGTCACAGCAG..................................................................................................................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	8.00	5.00	3.00	0.00	0.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	8.00	6.00	2.00	0.00	0.00
............................................................ATATTGTCCTCTCACAGCAGTA................................................................................................................................................................................	22	1	8.00	4.00	1.00	0.00	3.00
............................................................ATATTGTCCTGTCACAGCTT..................................................................................................................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
............................................................ATATTGTCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	8.00	5.00	2.00	0.00	1.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	8.00	4.00	4.00	0.00	0.00
............................................................ATATTGTCCTATCACAGCAG..................................................................................................................................................................................	20	1	8.00	0.00	8.00	0.00	0.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	8.00	3.00	4.00	0.00	1.00
............................................................ATATTGTCCTGTCCCAGCAGTA................................................................................................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
............................................................ATATTGTTCTGTCACAGCAGTA................................................................................................................................................................................	22	1	7.00	5.00	2.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGTAGTA................................................................................................................................................................................	22	1	7.00	5.00	2.00	0.00	0.00
..............................................................ATTGTCCTGTCACAGCAG..................................................................................................................................................................................	18	1	7.00	0.00	7.00	0.00	0.00
............................................................GTATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	7.00	4.00	1.00	0.00	2.00
............................................................ACATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	7.00	0.00	7.00	0.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	7.00	6.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCATTA................................................................................................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
............................................................ATATTGTCCTCTCACAGCAG..................................................................................................................................................................................	20	1	7.00	0.00	7.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCTGTA................................................................................................................................................................................	22	1	7.00	7.00	0.00	0.00	0.00
............................................................ATATTGTCCTxTCACAGCAGT.................................................................................................................................................................................	20	1	7.00	0.00	5.00	1.00	1.00
............................................................ATATTGTCCTGTCATAGCAG..................................................................................................................................................................................	20	1	6.00	0.00	6.00	0.00	0.00
............................................................ATATTGTCCTGTCACACCAG..................................................................................................................................................................................	20	1	6.00	0.00	6.00	0.00	0.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	6.00	5.00	1.00	0.00	0.00
...........................................................................................................CTGCTGGGTCGGGGCATTAA...................................................................................................................................	20	1	6.00	0.00	0.00	1.00	5.00
............................................................ATATTGTCCTGACACAGCAGTA................................................................................................................................................................................	22	1	6.00	0.00	2.00	0.00	4.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	6.00	0.00	6.00	0.00	0.00
............................................................ATATTGTCCTGACACAGCAG..................................................................................................................................................................................	20	1	6.00	0.00	4.00	2.00	0.00
............................................................ATATTGGACTGTCACAGCAGTA................................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTAACAGCAGTA................................................................................................................................................................................	22	1	5.00	4.00	1.00	0.00	0.00
............................................................ATGTTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	5.00	4.00	0.00	0.00	1.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	5.00	5.00	0.00	0.00	0.00
............................................................TTATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	5.00	0.00	5.00	0.00	0.00
............................................................TTATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCAAAGCAG..................................................................................................................................................................................	20	1	5.00	0.00	5.00	0.00	0.00
............................................................ATATTGTCCTATCACAGCAGTA................................................................................................................................................................................	22	1	5.00	5.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	5.00	2.00	3.00	0.00	0.00

droSec1

TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGAC-------------------------------------------------------------------A-------------------G-	Size	Hit Count	Total Norm	V113 Male body	V114 Embryo	V115 Head
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	44506.00	4696.00	6045.00	33765.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	9644.00	136.00	5906.00	3602.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	5628.00	204.00	75.00	5349.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	3149.00	0.00	19.00	3130.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	1875.00	77.00	19.00	1779.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	449.00	15.00	97.00	337.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	397.00	12.00	1.00	384.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	316.00	29.00	34.00	253.00
...........................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................	22	1	179.00	6.00	159.00	14.00
.............................................................TATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	21	1	169.00	8.00	50.00	111.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	83.00	5.00	8.00	70.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	72.00	7.00	21.00	44.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	72.00	43.00	3.00	26.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	71.00	28.00	15.00	28.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	63.00	5.00	16.00	42.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	55.00	5.00	12.00	38.00
..............................................................ATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	19	1	52.00	1.00	24.00	27.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	51.00	1.00	1.00	49.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	51.00	4.00	10.00	37.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	51.00	5.00	7.00	39.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	51.00	10.00	8.00	33.00
............................................................ATATTGTTCTGTCACAGCAGTA................................................................................................................................................................................	22	1	50.00	0.00	48.00	2.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	50.00	2.00	0.00	48.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	48.00	1.00	1.00	46.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	47.00	5.00	10.00	32.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	47.00	3.00	5.00	39.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	46.00	2.00	9.00	35.00
............................................................ACATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	45.00	0.00	40.00	5.00
..............................................................ATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	20	1	44.00	1.00	35.00	8.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	43.00	5.00	12.00	26.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	42.00	2.00	13.00	27.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	40.00	0.00	8.00	32.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	38.00	3.00	7.00	28.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	38.00	3.00	3.00	32.00
............................................................ATATTGTCCTGTCACAGCAAT.................................................................................................................................................................................	21	1	37.00	0.00	3.00	34.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	37.00	1.00	20.00	16.00
............................................................ATATTGTCCTGTCATAGCAGTA................................................................................................................................................................................	22	1	37.00	0.00	30.00	7.00
............................................................ATATTGTCCxxTCACAGCAGT.................................................................................................................................................................................	19	1	36.00	3.00	5.00	28.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	36.00	7.00	5.00	24.00
............................................................ATATTGTCCTGTCACAGCTGT.................................................................................................................................................................................	21	1	35.00	30.00	1.00	4.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	35.00	3.00	18.00	14.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	32.00	1.00	1.00	30.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	32.00	0.00	1.00	31.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	31.00	9.00	5.00	17.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	31.00	5.00	9.00	17.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	30.00	1.00	7.00	22.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	30.00	2.00	3.00	25.00
.............................................................TATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	21	1	28.00	0.00	0.00	28.00
............................................................AAATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	28.00	0.00	0.00	28.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	28.00	3.00	5.00	20.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	27.00	2.00	7.00	18.00
............................................................ATATTGTCCTGTCACAGCAGTAAA..............................................................................................................................................................................	24	1	27.00	3.00	0.00	24.00
.............................................................TATTGTCCTGTCACAGCAG..................................................................................................................................................................................	19	1	27.00	0.00	0.00	27.00
............................................................ATATTGTCCTGTxxCAGCAGT.................................................................................................................................................................................	19	1	27.00	0.00	9.00	18.00
............................................................ATATTGTCCAGTCACAGCAGT.................................................................................................................................................................................	21	1	26.00	0.00	1.00	25.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	26.00	3.00	1.00	22.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	26.00	2.00	10.00	14.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	26.00	1.00	1.00	24.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	26.00	3.00	1.00	22.00
............................................................ATATTGTCCTGTTACAGCAGTA................................................................................................................................................................................	22	1	24.00	0.00	23.00	1.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	24.00	3.00	5.00	16.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	22.00	0.00	0.00	22.00
............................................................ATATTGTCCTGTCACAGCAA..................................................................................................................................................................................	20	1	21.00	0.00	0.00	21.00
............................................................ATAATGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	1.00	3.00	16.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	20.00	2.00	3.00	15.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	1.00	2.00	17.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	18.00	0.00	3.00	15.00
..............................................................ATATTCCTGTCACAGCAGT.................................................................................................................................................................................	19	1	18.00	2.00	3.00	13.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	18.00	1.00	4.00	13.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	17.00	2.00	13.00	2.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	17.00	1.00	6.00	10.00
............................................................ATATTCTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	16.00	0.00	11.00	5.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	16.00	0.00	12.00	4.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	16.00	0.00	2.00	14.00
...........................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................	21	1	15.00	0.00	13.00	2.00
............................................................ATATTGTCCTGTCACACCAG..................................................................................................................................................................................	20	1	14.00	2.00	1.00	11.00
............................................................ATATTGTCCTGTCACAGCCGTA................................................................................................................................................................................	22	1	14.00	3.00	9.00	2.00
............................................................ATGTTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	13.00	0.00	7.00	6.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	13.00	1.00	6.00	6.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	13.00	0.00	6.00	7.00
............................................................ATATAGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	13.00	0.00	1.00	12.00
............................................................ATATTGTCCTGTxxCAGCAGTA................................................................................................................................................................................	20	2	6.50	0.00	5.50	1.00
............................................................ATATTGTCTTGTCACAGCAGTA................................................................................................................................................................................	22	1	13.00	0.00	10.00	3.00
............................................................ATATTGTCCTGTCACAGCGGTA................................................................................................................................................................................	22	1	13.00	0.00	6.00	7.00
............................................................ATATTGTCCTGTCACAGCCG..................................................................................................................................................................................	20	1	13.00	2.00	1.00	10.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	12.00	0.00	0.00	12.00
............................................................ATATTATCCTGTCACAGCAG..................................................................................................................................................................................	20	1	12.00	0.00	0.00	12.00
............................................................ATATTGTCCTGTCGCAGCAGTA................................................................................................................................................................................	22	1	12.00	0.00	10.00	2.00
............................................................ATATTGTCCTGTCACACCAGTA................................................................................................................................................................................	22	1	12.00	0.00	10.00	2.00
............................................................ATTTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	12.00	0.00	4.00	8.00
............................................................ATATTGTCCTGCCACAGCAG..................................................................................................................................................................................	20	1	12.00	0.00	0.00	12.00
............................................................ATATTGTGCTGTCACAGCAGT.................................................................................................................................................................................	21	1	11.00	1.00	0.00	10.00
............................................................ATATTGTCCTGTCACTGCAGT.................................................................................................................................................................................	21	1	11.00	0.00	8.00	3.00
............................................................ATATTGCCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	11.00	0.00	7.00	4.00
............................................................ATATTGTCCTGTCACAGTAGTA................................................................................................................................................................................	22	1	10.00	0.00	7.00	3.00
............................................................ATATTTTCCTGTCACAGCA...................................................................................................................................................................................	19	1	10.00	0.00	0.00	10.00
............................................................ATATTGTCCTGTCACAGT....................................................................................................................................................................................	18	1	10.00	0.00	0.00	10.00
............................................................ATTTTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	10.00	0.00	10.00	0.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	10.00	0.00	6.00	4.00
............................................................ATATTGTCCTGTCGCAGCAG..................................................................................................................................................................................	20	1	10.00	0.00	0.00	10.00

droYak2

---------G----A------------ATTG-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCC-------------------------------------------------------------------A-------------------G-	Size	Hit Count	Total Norm	V046 Embryo	V052 Head	V120 Male body	V058 Head	M026 Head
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	46131.00	912.00	17480.00	1159.00	25139.00	1441.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	7400.00	3804.00	1115.00	34.00	1470.00	977.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	6709.00	10.00	1789.00	24.00	2068.00	2818.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	1230.00	18.00	469.00	7.00	719.00	17.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	774.00	12.00	177.00	0.00	581.00	4.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	655.00	2.00	217.00	3.00	373.00	60.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	625.00	21.00	264.00	3.00	332.00	5.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	393.00	2.00	108.00	4.00	278.00	1.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	391.00	0.00	36.00	1.00	184.00	170.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	368.00	0.00	62.00	0.00	306.00	0.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	345.00	4.00	66.00	1.00	107.00	167.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	235.00	0.00	39.00	0.00	196.00	0.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	182.00	4.00	24.00	1.00	151.00	2.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	157.00	3.00	27.00	2.00	125.00	0.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	150.00	1.00	61.00	1.00	84.00	3.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	149.00	1.00	24.00	0.00	124.00	0.00
............................................................ATATTGTCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	136.00	1.00	39.00	0.00	96.00	0.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	134.00	3.00	39.00	0.00	92.00	0.00
............................................................ATATTGTCCTGTCACAGCTGT.................................................................................................................................................................................	21	1	130.00	1.00	21.00	0.00	107.00	1.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	128.00	1.00	27.00	1.00	97.00	2.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	102.00	1.00	20.00	0.00	77.00	4.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	100.00	12.00	30.00	0.00	52.00	6.00
............................................................ATATTGTCCTGTCACAGCCG..................................................................................................................................................................................	20	1	99.00	0.00	20.00	0.00	58.00	21.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	99.00	0.00	15.00	0.00	84.00	0.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	89.00	1.00	27.00	0.00	61.00	0.00
............................................................ATATTGTCCTGTCACAGCAC..................................................................................................................................................................................	20	1	83.00	0.00	1.00	0.00	6.00	76.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	78.00	4.00	23.00	1.00	28.00	22.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	77.00	1.00	17.00	0.00	59.00	0.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	71.00	0.00	23.00	0.00	48.00	0.00
............................................................ATATTGTCCTGTCACAGCCGTA................................................................................................................................................................................	22	1	70.00	32.00	8.00	0.00	28.00	2.00
............................................................AGATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	70.00	0.00	16.00	0.00	54.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	69.00	0.00	22.00	0.00	47.00	0.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	67.00	0.00	3.00	0.00	4.00	60.00
...........................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................	22	1	65.00	35.00	2.00	0.00	6.00	22.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	59.00	0.00	14.00	0.00	45.00	0.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	58.00	0.00	21.00	1.00	35.00	1.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	56.00	2.00	7.00	1.00	46.00	0.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	55.00	0.00	12.00	1.00	42.00	0.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	54.00	0.00	26.00	3.00	25.00	0.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	54.00	0.00	17.00	0.00	36.00	1.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	53.00	1.00	21.00	1.00	29.00	1.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	52.00	1.00	21.00	1.00	29.00	0.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	52.00	0.00	28.00	1.00	22.00	1.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	51.00	2.00	16.00	2.00	31.00	0.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	50.00	0.00	20.00	0.00	28.00	2.00
............................................................ATATTGTCCTGTCACCGCCGT.................................................................................................................................................................................	21	1	50.00	1.00	8.00	0.00	41.00	0.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	48.00	1.00	13.00	1.00	33.00	0.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	48.00	0.00	12.00	0.00	31.00	5.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	48.00	1.00	18.00	0.00	29.00	0.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	48.00	1.00	12.00	1.00	34.00	0.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	48.00	0.00	14.00	0.00	34.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTCA...............................................................................................................................................................................	23	1	47.00	0.00	24.00	3.00	20.00	0.00
............................................................ATATTGTCCTGTCACTGCAGT.................................................................................................................................................................................	21	1	46.00	1.00	7.00	0.00	38.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTGT...............................................................................................................................................................................	23	1	46.00	0.00	18.00	2.00	25.00	1.00
............................................................ATATTGTCCTGTCACAGCAT..................................................................................................................................................................................	20	1	45.00	0.00	10.00	0.00	33.00	2.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	44.00	0.00	8.00	1.00	35.00	0.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	43.00	0.00	16.00	1.00	26.00	0.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	43.00	3.00	4.00	0.00	36.00	0.00
............................................................ATATTGTCCTGTCACATCATT.................................................................................................................................................................................	21	1	42.00	0.00	8.00	0.00	34.00	0.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	41.00	1.00	10.00	0.00	29.00	1.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	38.00	3.00	17.00	0.00	18.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	37.00	11.00	8.00	0.00	11.00	7.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	37.00	4.00	14.00	0.00	19.00	0.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	36.00	2.00	9.00	0.00	24.00	1.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	35.00	1.00	10.00	2.00	22.00	0.00
............................................................ATATTGTCCGGTCACAGCAGT.................................................................................................................................................................................	21	1	35.00	0.00	12.00	0.00	23.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAAA..............................................................................................................................................................................	24	1	34.00	0.00	11.00	1.00	19.00	3.00
............................................................ATATTGTCCTGTCTCAGCAGT.................................................................................................................................................................................	21	1	34.00	0.00	4.00	0.00	30.00	0.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	29.00	0.00	6.00	0.00	23.00	0.00
............................................................ATATTGTCCTGTCCCAGCCGT.................................................................................................................................................................................	21	1	27.00	0.00	2.00	0.00	25.00	0.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	26.00	0.00	12.00	0.00	14.00	0.00
............................................................ATATTGTCCTGTCACAGCGG..................................................................................................................................................................................	20	1	26.00	0.00	5.00	0.00	9.00	12.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	25.00	0.00	13.00	0.00	11.00	1.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	24.00	2.00	10.00	1.00	11.00	0.00
............................................................ATATTGTGCTGTCACAGCAGT.................................................................................................................................................................................	21	1	24.00	0.00	9.00	0.00	15.00	0.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	24.00	3.00	7.00	0.00	14.00	0.00
............................................................ATATTGTCCTGGCACAGCAGG.................................................................................................................................................................................	21	1	22.00	1.00	6.00	0.00	15.00	0.00
............................................................ATATTGTCCTGTCACAGCCGC.................................................................................................................................................................................	21	1	22.00	0.00	1.00	0.00	21.00	0.00
.................................................................................................................................TTGTTGAGCGTCATTAGCAAC............................................................................................................	21	1	22.00	0.00	0.00	0.00	2.00	20.00
............................................................ATATTGTCCTGTCACCGCAG..................................................................................................................................................................................	20	1	22.00	0.00	5.00	0.00	17.00	0.00
............................................................ATATTGGCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	21.00	9.00	1.00	0.00	11.00	0.00
...........................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................	21	1	21.00	13.00	1.00	0.00	1.00	6.00
............................................................ATATTGTCCTGTCACAGCCGTT................................................................................................................................................................................	22	1	21.00	0.00	6.00	0.00	15.00	0.00
............................................................ATATTGTCATGTCACAGCAGTA................................................................................................................................................................................	22	1	20.00	14.00	1.00	0.00	5.00	0.00
............................................................CTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	1.00	13.00	0.00	6.00	0.00
............................................................ATATTGTCCTGTCACAGCAAT.................................................................................................................................................................................	21	1	20.00	0.00	10.00	0.00	10.00	0.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	0.00	9.00	0.00	11.00	0.00
............................................................ATATTGTCCTGTCACCGCAGTA................................................................................................................................................................................	22	1	20.00	7.00	1.00	0.00	12.00	0.00
............................................................ATATTGTCCTGTCACAGCAGGA................................................................................................................................................................................	22	1	19.00	7.00	1.00	0.00	11.00	0.00
............................................................ATATGGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	19.00	0.00	1.00	0.00	18.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAG...............................................................................................................................................................................	23	1	19.00	1.00	4.00	0.00	12.00	2.00
............................................................ATATTGTCCTGGCACAGCAGTA................................................................................................................................................................................	22	1	19.00	7.00	2.00	0.00	10.00	0.00
............................................................ATATTGTCCTTTCACAGCAG..................................................................................................................................................................................	20	1	18.00	0.00	6.00	0.00	9.00	3.00
............................................................ATATTGTCCTGTCACAGCAA..................................................................................................................................................................................	20	1	18.00	0.00	6.00	0.00	12.00	0.00
............................................................ATATTGCCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	18.00	9.00	1.00	0.00	4.00	4.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	17.00	5.00	3.00	0.00	9.00	0.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	17.00	1.00	5.00	0.00	10.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTAC...............................................................................................................................................................................	23	1	17.00	1.00	3.00	0.00	10.00	3.00
............................................................ATATTGTCCTGTCACAGCATTA................................................................................................................................................................................	22	1	17.00	0.00	5.00	0.00	12.00	0.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	17.00	7.00	6.00	0.00	2.00	2.00
............................................................ATATTGTCCTGTCACAGCAGCT................................................................................................................................................................................	22	1	16.00	1.00	5.00	0.00	10.00	0.00

droEre2

TATACC-ATG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CGGCGGTC-------------------------------------------------------------------A-------------------G-	Size	Hit Count	Total Norm	V040 Embryo	V060 Head	V047 Embryo	V108 Head
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	54911.00	1131.00	6048.00	0.00	47732.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	9914.00	2723.00	559.00	0.00	6632.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	6316.00	13.00	599.00	0.00	5704.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	5135.00	3.00	219.00	0.00	4913.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	1738.00	27.00	86.00	0.00	1625.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	1603.00	15.00	128.00	0.00	1460.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	357.00	1.00	4.00	0.00	352.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	320.00	22.00	53.00	0.00	245.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	286.00	0.00	5.00	0.00	281.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	273.00	1.00	3.00	0.00	269.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	200.00	1.00	9.00	0.00	190.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	171.00	2.00	16.00	0.00	153.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	159.00	8.00	22.00	0.00	129.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	145.00	4.00	3.00	0.00	138.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	144.00	17.00	73.00	0.00	54.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	140.00	5.00	28.00	0.00	107.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	131.00	1.00	9.00	0.00	121.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	126.00	6.00	22.00	0.00	98.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	125.00	3.00	12.00	0.00	110.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	121.00	1.00	12.00	0.00	108.00
.............................................................TATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	21	1	107.00	9.00	4.00	0.00	94.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	106.00	60.00	5.00	0.00	41.00
............................................................ATATTGTCCTGTCACAGCAGTAAA..............................................................................................................................................................................	24	1	99.00	1.00	4.00	0.00	94.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	93.00	2.00	14.00	0.00	77.00
...........................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................	22	1	85.00	16.00	23.00	0.00	46.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	82.00	1.00	29.00	0.00	52.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	82.00	0.00	4.00	0.00	78.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	79.00	0.00	27.00	0.00	52.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	73.00	3.00	5.00	0.00	65.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	71.00	1.00	7.00	0.00	63.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	67.00	2.00	6.00	0.00	59.00
............................................................ATATTGTCCTGTCACAGCAGTGT...............................................................................................................................................................................	23	1	67.00	0.00	11.00	0.00	56.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	65.00	1.00	6.00	0.00	58.00
..............................................................ATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	19	1	63.00	1.00	6.00	0.00	56.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	61.00	0.00	1.00	0.00	60.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	59.00	9.00	15.00	0.00	35.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	58.00	0.00	4.00	0.00	54.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	57.00	10.00	4.00	0.00	43.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	57.00	3.00	8.00	0.00	46.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	57.00	0.00	12.00	0.00	45.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	55.00	0.00	4.00	0.00	51.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	53.00	2.00	5.00	0.00	46.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	53.00	1.00	18.00	0.00	34.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	46.00	1.00	7.00	0.00	38.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	46.00	2.00	6.00	0.00	38.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	46.00	3.00	13.00	0.00	30.00
............................................................ATATTGTCATGTCACAGCAGTA................................................................................................................................................................................	22	1	46.00	1.00	1.00	0.00	44.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	45.00	12.00	4.00	0.00	29.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	44.00	1.00	2.00	0.00	41.00
............................................................ATATTGTCCTGTCACAGCAT..................................................................................................................................................................................	20	1	43.00	0.00	7.00	0.00	36.00
............................................................ATATTGTCCTGTCACAGCAGTAG...............................................................................................................................................................................	23	1	43.00	0.00	1.00	0.00	42.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	43.00	0.00	5.00	0.00	38.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	42.00	1.00	5.00	0.00	36.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	40.00	2.00	3.00	0.00	35.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	39.00	1.00	6.00	0.00	32.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	39.00	2.00	7.00	0.00	30.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	39.00	2.00	5.00	0.00	32.00
............................................................ATATTGTCCTGTAACAGCAGTA................................................................................................................................................................................	22	1	38.00	0.00	1.00	0.00	37.00
............................................................ATATTGTCCTGTCACAGCAGTAC...............................................................................................................................................................................	23	1	38.00	3.00	5.00	0.00	30.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	38.00	2.00	6.00	0.00	30.00
............................................................ATATTGTCCTGTxxCAGCAGT.................................................................................................................................................................................	19	1	38.00	1.00	0.00	0.00	37.00
............................................................ATATTGTCCTTTCACAGCAGTA................................................................................................................................................................................	22	1	37.00	17.00	3.00	0.00	17.00
............................................................ATTTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	37.00	0.00	1.00	0.00	36.00
............................................................ATATTGTCCxxTCACAGCAGT.................................................................................................................................................................................	19	1	37.00	0.00	0.00	0.00	37.00
............................................................ATATTGTCCTGTCACATCA...................................................................................................................................................................................	19	1	37.00	0.00	3.00	0.00	34.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	36.00	0.00	5.00	0.00	31.00
............................................................ATATTGTCATGTCACAGCA...................................................................................................................................................................................	19	1	36.00	0.00	1.00	0.00	35.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	35.00	2.00	1.00	0.00	32.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	35.00	0.00	9.00	0.00	26.00
............................................................ATATTGTCCTGTCACAGCATTA................................................................................................................................................................................	22	1	34.00	14.00	2.00	0.00	18.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	34.00	0.00	10.00	0.00	24.00
............................................................ATATTGTACTGTCACAGCAGTA................................................................................................................................................................................	22	1	33.00	2.00	1.00	0.00	30.00
............................................................ATAGTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	33.00	2.00	7.00	0.00	24.00
............................................................ATATTTTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	32.00	11.00	1.00	0.00	20.00
............................................................ATATTGTCCTGTCACAGCAGTGA...............................................................................................................................................................................	23	1	32.00	0.00	0.00	0.00	32.00
............................................................CTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	31.00	2.00	4.00	0.00	25.00
............................................................ATATTGTACTGTCACAGCAG..................................................................................................................................................................................	20	1	30.00	0.00	0.00	0.00	30.00
............................................................ATATTGTCATGTCACAGCAG..................................................................................................................................................................................	20	1	29.00	0.00	0.00	0.00	29.00
............................................................ATATTGTCCTGTCACAGCCGTA................................................................................................................................................................................	22	1	29.00	19.00	4.00	0.00	6.00
............................................................ATATTGTACTGTCACAGCA...................................................................................................................................................................................	19	1	28.00	0.00	0.00	0.00	28.00
............................................................ATAATGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	28.00	0.00	4.00	0.00	24.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	28.00	18.00	1.00	0.00	9.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	28.00	0.00	3.00	0.00	25.00
............................................................ATATTGTCCTTTCACAGCA...................................................................................................................................................................................	19	1	27.00	0.00	1.00	0.00	26.00
............................................................ATATTGTCCTGTCACAGCAGTTG...............................................................................................................................................................................	23	1	27.00	0.00	3.00	0.00	24.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	26.00	13.00	9.00	0.00	4.00
..............................................................ATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	20	1	25.00	0.00	0.00	0.00	25.00
............................................................ATATTGTCCTGTCACAGCAGGA................................................................................................................................................................................	22	1	25.00	20.00	1.00	0.00	4.00
............................................................ATATTGTCCTGTCACCGCAGTA................................................................................................................................................................................	22	1	25.00	14.00	1.00	0.00	10.00
............................................................ATATTGTCCTGTCAAAGCAGTA................................................................................................................................................................................	22	1	25.00	4.00	1.00	0.00	20.00
............................................................ATATTGTCCTGTAACAGCAG..................................................................................................................................................................................	20	1	23.00	0.00	0.00	0.00	23.00
............................................................ATATTGTCCTGTCACAGAAGTA................................................................................................................................................................................	22	1	23.00	0.00	1.00	0.00	22.00
............................................................ATATTGTCCTGTCACTGCAGT.................................................................................................................................................................................	21	1	22.00	0.00	5.00	0.00	17.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	21.00	6.00	1.00	0.00	14.00
............................................................ATATTGTCCTGTAACAGCA...................................................................................................................................................................................	19	1	21.00	0.00	0.00	0.00	21.00
............................................................ATATTGTCCTGTCACAGAAG..................................................................................................................................................................................	20	1	20.00	0.00	0.00	0.00	20.00
............................................................ATATTGTCCTTTCACAGCAG..................................................................................................................................................................................	20	1	19.00	0.00	3.00	0.00	16.00
............................................................ATATTGTCCTGTCACAGCAA..................................................................................................................................................................................	20	1	19.00	0.00	2.00	0.00	17.00
..............................................................ATATTCCTGTCACAGCAGT.................................................................................................................................................................................	19	1	19.00	0.00	0.00	0.00	19.00
............................................................ATATTTTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	19.00	0.00	0.00	0.00	19.00
............................................................ATATTGTCATGTCACAGCAGTAA...............................................................................................................................................................................	23	1	19.00	0.00	0.00	0.00	19.00

droEug1

TATGCC-ACA----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------TGGCGGCA-------------------------------------------------------------------A-------------------G-

Size

Hit Count

Total Norm

droBia1

TACATCCATC----G------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-

Size

Hit Count

Total Norm

droTak1

TGTAC--ACA----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-

Size

Hit Count

Total Norm

droEle1

TACACT-ACG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG---------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

droRho1

TATGTC-ACG----A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------AGGCGGCC-------------------------------------------------------------------A-------------------G-

Size

Hit Count

Total Norm

droFic1

TATTCC-ATG----G------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAAA-ACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACA-GGCG-GCGGCGGCA-------------------------------------------------------------------A-------------------G-

Size

Hit Count

Total Norm

droKik1

TATATC-GCGC---A------------AATC-------------G-GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAG--------CAGCGGAA----------------------------AACTCC-------------------------------------------------------

Size

Hit Count

Total Norm

droAna3

TA--------------------------------------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG----------------------------------------------------------------------------------A-------------------G-	Size	Hit Count	Total Norm	V105 Male body	V106 Head	V055 Unknown	V039 Embryo
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	52523.00	2408.00	34186.00	15698.00	231.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	8613.00	66.00	6898.00	1264.00	385.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	7515.00	52.00	5468.00	1987.00	8.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	5652.00	58.00	4620.00	973.00	1.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	2051.00	4.00	1571.00	475.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	1152.00	7.00	902.00	230.00	13.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	771.00	38.00	644.00	88.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTGT...............................................................................................................................................................................	23	1	484.00	37.00	268.00	179.00	0.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	419.00	16.00	326.00	70.00	7.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	326.00	15.00	281.00	30.00	0.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	256.00	10.00	106.00	139.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTGA...............................................................................................................................................................................	23	1	222.00	2.00	214.00	6.00	0.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	190.00	6.00	111.00	73.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	183.00	3.00	114.00	66.00	0.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	173.00	2.00	6.00	163.00	2.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	161.00	0.00	134.00	27.00	0.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	159.00	2.00	10.00	143.00	4.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	158.00	1.00	123.00	33.00	1.00
............................................................ATATTGTCCTGTCACAGCAT..................................................................................................................................................................................	20	1	138.00	3.00	120.00	15.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAG...............................................................................................................................................................................	23	1	135.00	5.00	109.00	21.00	0.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	135.00	7.00	40.00	88.00	0.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	122.00	3.00	46.00	72.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTTG...............................................................................................................................................................................	23	1	117.00	2.00	71.00	44.00	0.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	114.00	4.00	60.00	50.00	0.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	112.00	2.00	45.00	64.00	1.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	103.00	4.00	64.00	35.00	0.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	101.00	1.00	44.00	51.00	5.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	99.00	9.00	22.00	67.00	1.00
............................................................ATATTGTCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	96.00	4.00	7.00	85.00	0.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	90.00	8.00	54.00	28.00	0.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	82.00	2.00	14.00	66.00	0.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	82.00	4.00	6.00	72.00	0.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	78.00	2.00	47.00	28.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTGG...............................................................................................................................................................................	23	1	77.00	0.00	69.00	8.00	0.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	77.00	6.00	52.00	19.00	0.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	76.00	0.00	70.00	1.00	5.00
............................................................ATATTGTCCTGTCACAGCAGTAAA..............................................................................................................................................................................	24	1	75.00	0.00	59.00	13.00	3.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	74.00	0.00	55.00	19.00	0.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	74.00	4.00	33.00	37.00	0.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	72.00	3.00	7.00	62.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	69.00	1.00	51.00	16.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTTA...............................................................................................................................................................................	23	1	68.00	3.00	45.00	20.00	0.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	65.00	0.00	14.00	50.00	1.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	65.00	6.00	32.00	24.00	3.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	63.00	4.00	51.00	6.00	2.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	62.00	3.00	10.00	46.00	3.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	61.00	7.00	24.00	29.00	1.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	61.00	1.00	29.00	30.00	1.00
............................................................ATATTGTCCTGTCACAGAAGTA................................................................................................................................................................................	22	1	59.00	0.00	58.00	1.00	0.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	58.00	1.00	42.00	15.00	0.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	57.00	8.00	32.00	17.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTTGT..............................................................................................................................................................................	24	1	57.00	6.00	22.00	29.00	0.00
............................................................ATATTGTCCTGTCACATCAGTT................................................................................................................................................................................	22	1	56.00	0.00	52.00	4.00	0.00
............................................................ATATTGTCCTGTCACAGCTGT.................................................................................................................................................................................	21	1	55.00	0.00	6.00	49.00	0.00
............................................................ATATTGTCCTGTCACAGAAGTT................................................................................................................................................................................	22	1	55.00	1.00	52.00	2.00	0.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	54.00	1.00	32.00	21.00	0.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	54.00	2.00	17.00	35.00	0.00
............................................................AGATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	52.00	5.00	1.00	46.00	0.00
............................................................ATATTGTCCTGTCACAGAAG..................................................................................................................................................................................	20	1	50.00	1.00	47.00	2.00	0.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	48.00	12.00	16.00	20.00	0.00
............................................................ATATTGTCCTGTCACAGCAGAA................................................................................................................................................................................	22	1	48.00	1.00	43.00	4.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	47.00	1.00	2.00	44.00	0.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	45.00	2.00	29.00	14.00	0.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	44.00	2.00	17.00	25.00	0.00
............................................................ATATTGTCCTGTCACAGCAGAT................................................................................................................................................................................	22	1	44.00	1.00	37.00	6.00	0.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	41.00	1.00	22.00	18.00	0.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	41.00	3.00	21.00	17.00	0.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	41.00	1.00	18.00	22.00	0.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	40.00	3.00	20.00	17.00	0.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	39.00	0.00	27.00	10.00	2.00
............................................................ATATTGTCCTGTCACAGCT...................................................................................................................................................................................	19	1	38.00	0.00	15.00	22.00	1.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	37.00	3.00	21.00	13.00	0.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	36.00	0.00	17.00	18.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	36.00	1.00	12.00	23.00	0.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	35.00	4.00	6.00	25.00	0.00
............................................................ATATTGTCATGTCACAGCAGTA................................................................................................................................................................................	22	1	35.00	2.00	26.00	7.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAGT..............................................................................................................................................................................	24	1	34.00	1.00	15.00	18.00	0.00
............................................................ATATGGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	34.00	0.00	3.00	31.00	0.00
............................................................ATATTGTCCGGTCACAGCAGT.................................................................................................................................................................................	21	1	34.00	0.00	4.00	30.00	0.00
..............................................................ATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	19	1	32.00	1.00	27.00	4.00	0.00
............................................................ATATTGTCCTGTCACAGCAA..................................................................................................................................................................................	20	1	31.00	1.00	14.00	16.00	0.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	30.00	3.00	9.00	18.00	0.00
............................................................ATATTGTCATGTCACAGCAG..................................................................................................................................................................................	20	1	28.00	1.00	13.00	14.00	0.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	27.00	1.00	5.00	21.00	0.00
............................................................ATATTGTCCxxTCACAGCAGT.................................................................................................................................................................................	19	1	26.00	3.00	23.00	0.00	0.00
............................................................ATATTGGCCTGTCACAGCAG..................................................................................................................................................................................	20	1	25.00	0.00	2.00	23.00	0.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	25.00	0.00	15.00	8.00	2.00
............................................................ATGTTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	24.00	0.00	20.00	4.00	0.00
............................................................ATATTGTCCTGTCACTGCAGT.................................................................................................................................................................................	21	1	24.00	6.00	7.00	11.00	0.00
............................................................ATATTGTCCTGCCACAGCAG..................................................................................................................................................................................	20	1	24.00	2.00	9.00	13.00	0.00
............................................................ATATTGTCCTGTCACATCA...................................................................................................................................................................................	19	1	23.00	0.00	20.00	3.00	0.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	23.00	0.00	7.00	16.00	0.00
............................................................ATATTGTCCTGTCACAGCAGCT................................................................................................................................................................................	22	1	23.00	0.00	16.00	7.00	0.00
.............................................................TATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	21	1	22.00	0.00	19.00	2.00	1.00
............................................................ATATTGTCCTGTCACAGCAGGA................................................................................................................................................................................	22	1	22.00	0.00	13.00	7.00	2.00
............................................................ATATTGTCCTGTCACAGCAGTTAT..............................................................................................................................................................................	24	1	22.00	2.00	8.00	12.00	0.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	22.00	1.00	13.00	8.00	0.00
............................................................ATATTGTGCTGTCACAGCAGT.................................................................................................................................................................................	21	1	22.00	2.00	8.00	12.00	0.00
............................................................ATATTGTCGTGTCACAGCAGT.................................................................................................................................................................................	21	1	22.00	1.00	9.00	12.00	0.00
............................................................ATATTGTCCTGTCACAGCCG..................................................................................................................................................................................	20	1	21.00	0.00	0.00	21.00	0.00
............................................................GTATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	21.00	0.00	16.00	5.00	0.00

droBip1

TATACC-GTC----A------------TAT--------------A-GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATATAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGG----------------------------------------------------------------------------------A-------------------G-

Size

Hit Count

Total Norm

dp4

TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGAAGGAGAAGCTACAAAGCTACAAAGCTACGGAAAAATGCTAC------------------------------A-------------------G-	Size	Hit Count	Total Norm	V112 Male body	V043 Embryo	V051 Head	M022 Male body
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	13895.00	1506.00	2055.00	10327.00	7.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	9388.00	86.00	8201.00	1093.00	8.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	1095.00	38.00	20.00	1029.00	8.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	386.00	39.00	60.00	287.00	0.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	380.00	2.00	9.00	368.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	169.00	2.00	51.00	116.00	0.00
...........................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................	22	1	124.00	4.00	95.00	25.00	0.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	66.00	1.00	16.00	49.00	0.00
............................................................ATATTGTCCTGTCACAGCCGTA................................................................................................................................................................................	22	1	64.00	0.00	62.00	2.00	0.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	50.00	0.00	3.00	46.00	1.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	45.00	0.00	9.00	36.00	0.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	45.00	3.00	5.00	37.00	0.00
............................................................ATATTGTCCTGTCACAGCAGGA................................................................................................................................................................................	22	1	42.00	0.00	36.00	6.00	0.00
............................................................ATATTGGCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	42.00	0.00	39.00	3.00	0.00
............................................................ATATTGTCCTGTCACCGCAGTA................................................................................................................................................................................	22	1	38.00	0.00	37.00	1.00	0.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	37.00	1.00	14.00	22.00	0.00
...........................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................	21	1	36.00	2.00	25.00	9.00	0.00
............................................................ATATTGTCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	35.00	0.00	8.00	27.00	0.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	34.00	2.00	5.00	27.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	34.00	1.00	20.00	13.00	0.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	28.00	0.00	26.00	2.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	28.00	0.00	26.00	2.00	0.00
............................................................ATATTGTCATGTCACAGCAGTA................................................................................................................................................................................	22	1	28.00	0.00	28.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	27.00	1.00	2.00	24.00	0.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	25.00	0.00	2.00	23.00	0.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	25.00	0.00	10.00	15.00	0.00
............................................................ATATTGTACTGTCACAGCAGTA................................................................................................................................................................................	22	1	25.00	0.00	22.00	3.00	0.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	24.00	3.00	3.00	18.00	0.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	24.00	0.00	2.00	22.00	0.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	22.00	1.00	6.00	15.00	0.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	22.00	2.00	7.00	13.00	0.00
............................................................ATATTGTCCTGTCAAAGCAGTA................................................................................................................................................................................	22	1	21.00	0.00	20.00	1.00	0.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	1.00	4.00	15.00	0.00
............................................................ATATTGTCCTGGCACAGCAGTA................................................................................................................................................................................	22	1	20.00	0.00	18.00	2.00	0.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	20.00	1.00	5.00	14.00	0.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	20.00	1.00	3.00	16.00	0.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	20.00	0.00	7.00	13.00	0.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	20.00	1.00	4.00	15.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	19.00	0.00	8.00	11.00	0.00
............................................................ATATTGTCCTGTCATAGCAGTA................................................................................................................................................................................	22	1	18.00	0.00	17.00	1.00	0.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	17.00	0.00	4.00	13.00	0.00
............................................................ATATTGTCCTGTAACAGCAGTA................................................................................................................................................................................	22	1	16.00	0.00	15.00	1.00	0.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	16.00	1.00	3.00	12.00	0.00
............................................................ATATTGTCCTGTCACAGCTGT.................................................................................................................................................................................	21	1	15.00	1.00	5.00	9.00	0.00
............................................................ATATTGTCCTGTCACAGCTGTA................................................................................................................................................................................	22	1	15.00	0.00	13.00	2.00	0.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	15.00	1.00	1.00	13.00	0.00
............................................................ATATTGCCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	15.00	0.00	15.00	0.00	0.00
............................................................AGATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	15.00	0.00	1.00	14.00	0.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	15.00	2.00	5.00	8.00	0.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	15.00	1.00	1.00	13.00	0.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	14.00	0.00	12.00	2.00	0.00
............................................................ATATTGACCTGTCACAGCAGTA................................................................................................................................................................................	22	1	14.00	0.00	13.00	1.00	0.00
............................................................ATATTGTCCTGTCACAACAGTA................................................................................................................................................................................	22	1	14.00	0.00	13.00	1.00	0.00
............................................................ATATTGTCCTGTCACACCAGTA................................................................................................................................................................................	22	1	14.00	0.00	7.00	7.00	0.00
............................................................AGATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	14.00	0.00	14.00	0.00	0.00
............................................................ATATTGTCCTGTTACAGCAGTA................................................................................................................................................................................	22	1	14.00	0.00	14.00	0.00	0.00
............................................................ATATCGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	14.00	0.00	10.00	4.00	0.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	13.00	0.00	4.00	9.00	0.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	13.00	2.00	1.00	10.00	0.00
............................................................ATATTGTCCTGTCACAGCGGTA................................................................................................................................................................................	22	1	13.00	0.00	10.00	3.00	0.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	13.00	0.00	11.00	2.00	0.00
............................................................ATATTGTCCTGTCGCAGCAGTA................................................................................................................................................................................	22	1	13.00	0.00	11.00	2.00	0.00
............................................................ATATTGTCCTGTCACAGAAGTA................................................................................................................................................................................	22	1	13.00	0.00	11.00	2.00	0.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	13.00	0.00	4.00	9.00	0.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	13.00	1.00	2.00	10.00	0.00
.............................................................TATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	21	1	13.00	0.00	11.00	2.00	0.00
............................................................ATATTATCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	12.00	0.00	12.00	0.00	0.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	12.00	1.00	3.00	8.00	0.00
............................................................ATATTGTCCGGTCACAGCAGT.................................................................................................................................................................................	21	1	12.00	0.00	2.00	10.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	12.00	0.00	10.00	2.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	12.00	0.00	6.00	6.00	0.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	12.00	1.00	7.00	4.00	0.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	12.00	2.00	4.00	6.00	0.00
............................................................ATATTGTCCTGTCACTGCAGTA................................................................................................................................................................................	22	1	12.00	0.00	11.00	1.00	0.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	12.00	0.00	1.00	11.00	0.00
............................................................ATATTGTCCTCTCACAGCAGTA................................................................................................................................................................................	22	1	11.00	0.00	10.00	1.00	0.00
............................................................ATATTGTCCTGTCACAGCCG..................................................................................................................................................................................	20	1	11.00	0.00	1.00	10.00	0.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	11.00	1.00	1.00	9.00	0.00
............................................................ATATTGTCCTGTCACAGTAGTA................................................................................................................................................................................	22	1	11.00	0.00	9.00	2.00	0.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	11.00	1.00	0.00	10.00	0.00
..................................................................................TTGTAAC--TTAAT--TATAGCCTA.......................................................................................................................................................	21	1	11.00	1.00	9.00	1.00	0.00
............................................................ATATTGTCCTATCACAGCAGTA................................................................................................................................................................................	22	1	11.00	0.00	9.00	2.00	0.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	11.00	1.00	2.00	8.00	0.00
............................................................ATATTGTCCCGTCACAGCAGTA................................................................................................................................................................................	22	1	11.00	0.00	11.00	0.00	0.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	11.00	0.00	3.00	8.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	10.00	1.00	0.00	9.00	0.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	10.00	2.00	1.00	7.00	0.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	10.00	0.00	1.00	9.00	0.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	10.00	0.00	3.00	7.00	0.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	10.00	1.00	0.00	9.00	0.00
............................................................ATATTGTCCTTTCACAGCAGTA................................................................................................................................................................................	22	1	9.00	0.00	7.00	2.00	0.00
............................................................ATATTGTCCTGTCACGGCAGTA................................................................................................................................................................................	22	1	9.00	0.00	9.00	0.00	0.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	9.00	0.00	0.00	9.00	0.00
............................................................ATGTTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	9.00	0.00	7.00	2.00	0.00
............................................................ATATTGTGCTGTCACAGCAGT.................................................................................................................................................................................	21	1	9.00	0.00	6.00	3.00	0.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	9.00	1.00	2.00	6.00	0.00
............................................................ATATTGTCCTGTCACACCAG..................................................................................................................................................................................	20	1	9.00	0.00	0.00	9.00	0.00
............................................................ATATTGGCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	9.00	0.00	2.00	7.00	0.00
............................................................GTATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	9.00	0.00	8.00	1.00	0.00
............................................................ATATTGTCCTGTCACAGCATTA................................................................................................................................................................................	22	1	9.00	0.00	8.00	1.00	0.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	9.00	1.00	1.00	7.00	0.00

droPer1

TATC-----GAATTACATACGGCGTCGGATCGGAGCAGATGAGAG-GGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAG--------AGCTACA-----------------AAGCTACGGAAAAATGCTAC------------------------------A-------------------G-	Size	Hit Count	Total Norm	V111 Male body	V042 Embryo	V050 Head	V057 Head	M021 Embryo
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	54362.00	835.00	420.00	12502.00	40531.00	74.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	4590.00	37.00	1169.00	1050.00	2069.00	265.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	4056.00	12.00	12.00	1162.00	2792.00	78.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	1673.00	20.00	6.00	304.00	1343.00	0.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	898.00	2.00	4.00	347.00	545.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	433.00	4.00	14.00	147.00	268.00	0.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	418.00	2.00	0.00	64.00	347.00	5.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	404.00	0.00	1.00	21.00	382.00	0.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	309.00	0.00	5.00	55.00	249.00	0.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	241.00	0.00	1.00	18.00	222.00	0.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	236.00	0.00	0.00	37.00	199.00	0.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	227.00	0.00	1.00	28.00	186.00	12.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	224.00	1.00	1.00	28.00	194.00	0.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	210.00	1.00	0.00	24.00	185.00	0.00
............................................................ATATTGTCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	198.00	0.00	0.00	13.00	185.00	0.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	193.00	0.00	2.00	24.00	167.00	0.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	156.00	1.00	0.00	39.00	116.00	0.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	151.00	1.00	0.00	19.00	131.00	0.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	148.00	0.00	0.00	7.00	141.00	0.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	143.00	0.00	1.00	16.00	126.00	0.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	130.00	1.00	2.00	10.00	117.00	0.00
............................................................ATATTGTCCTGTCACAGCTGT.................................................................................................................................................................................	21	1	125.00	0.00	0.00	10.00	115.00	0.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	123.00	0.00	1.00	17.00	105.00	0.00
............................................................AGATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	120.00	0.00	0.00	5.00	114.00	1.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	112.00	0.00	0.00	16.00	96.00	0.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	111.00	0.00	0.00	39.00	72.00	0.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	103.00	0.00	1.00	59.00	43.00	0.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	102.00	1.00	0.00	4.00	97.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	97.00	0.00	0.00	2.00	95.00	0.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	97.00	1.00	0.00	19.00	77.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	94.00	0.00	2.00	25.00	67.00	0.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	94.00	0.00	0.00	7.00	87.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	92.00	0.00	4.00	15.00	73.00	0.00
............................................................ATATTGTCCGGTCACAGCAGT.................................................................................................................................................................................	21	1	90.00	0.00	1.00	1.00	88.00	0.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	84.00	1.00	0.00	13.00	70.00	0.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	80.00	1.00	1.00	14.00	64.00	0.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	79.00	1.00	0.00	11.00	67.00	0.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	78.00	0.00	0.00	20.00	58.00	0.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	75.00	0.00	1.00	10.00	64.00	0.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	74.00	0.00	1.00	8.00	65.00	0.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	73.00	0.00	0.00	8.00	65.00	0.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	72.00	0.00	0.00	11.00	61.00	0.00
............................................................ATATGGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	66.00	0.00	0.00	6.00	60.00	0.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	62.00	0.00	3.00	11.00	48.00	0.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	62.00	0.00	0.00	10.00	52.00	0.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	62.00	0.00	1.00	12.00	49.00	0.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	60.00	1.00	0.00	8.00	51.00	0.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	58.00	0.00	1.00	3.00	54.00	0.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	57.00	0.00	1.00	11.00	45.00	0.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	56.00	0.00	0.00	7.00	49.00	0.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	56.00	0.00	0.00	8.00	48.00	0.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	55.00	0.00	0.00	16.00	39.00	0.00
...........................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................	22	1	55.00	1.00	15.00	26.00	1.00	12.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	54.00	0.00	1.00	13.00	40.00	0.00
............................................................ATATTGTGCTGTCACAGCAGT.................................................................................................................................................................................	21	1	49.00	1.00	0.00	6.00	42.00	0.00
............................................................ATATTGGCATGTCACAGCAGT.................................................................................................................................................................................	21	1	37.00	0.00	2.00	0.00	35.00	0.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	36.00	0.00	2.00	14.00	20.00	0.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	36.00	0.00	0.00	9.00	27.00	0.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	34.00	0.00	0.00	4.00	30.00	0.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	34.00	1.00	1.00	12.00	20.00	0.00
............................................................ATATTGTCCTGTCACAGCAAT.................................................................................................................................................................................	21	1	33.00	0.00	0.00	12.00	21.00	0.00
............................................................ATATTGTCCTGTCACACCAG..................................................................................................................................................................................	20	1	32.00	0.00	0.00	8.00	24.00	0.00
............................................................ATATTGTCCTGTCACTGCAGT.................................................................................................................................................................................	21	1	32.00	0.00	1.00	2.00	29.00	0.00
............................................................ATATTGTCCTGTCACAGCAT..................................................................................................................................................................................	20	1	32.00	0.00	0.00	5.00	27.00	0.00
............................................................ATATAGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	30.00	0.00	0.00	3.00	27.00	0.00
............................................................ATATTGCCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	30.00	0.00	0.00	1.00	29.00	0.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	29.00	0.00	0.00	9.00	20.00	0.00
............................................................ATATTGGCCTGTCACAGCAG..................................................................................................................................................................................	20	1	27.00	0.00	0.00	1.00	26.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	27.00	0.00	0.00	7.00	20.00	0.00
............................................................ATATTGTCCTGTCACAGCCGTA................................................................................................................................................................................	22	1	27.00	0.00	17.00	3.00	7.00	0.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	27.00	0.00	0.00	5.00	22.00	0.00
............................................................ATATTGGCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	27.00	0.00	0.00	1.00	26.00	0.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	27.00	0.00	0.00	6.00	21.00	0.00
............................................................ATATTGTCCTGTCTCAGCAGT.................................................................................................................................................................................	21	1	26.00	0.00	0.00	7.00	19.00	0.00
............................................................ATATTGGCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	25.00	0.00	0.00	2.00	23.00	0.00
............................................................ATATTGTCCTGTCACAGCCGC.................................................................................................................................................................................	21	1	24.00	0.00	0.00	6.00	18.00	0.00
............................................................ATATTGTCCTGTCACAGCT...................................................................................................................................................................................	19	1	24.00	0.00	0.00	2.00	22.00	0.00
............................................................ATATTGTCGTGTCACAGCAGT.................................................................................................................................................................................	21	1	24.00	0.00	0.00	4.00	20.00	0.00
............................................................ATATTGTCCTGGCACAGCAGG.................................................................................................................................................................................	21	1	24.00	0.00	0.00	2.00	22.00	0.00
............................................................ATATTGTCCTGTCACAGCCG..................................................................................................................................................................................	20	1	23.00	0.00	0.00	4.00	19.00	0.00
............................................................ATATTGTCCTGTCACCGCCGT.................................................................................................................................................................................	21	1	23.00	0.00	0.00	2.00	21.00	0.00
............................................................AAATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	23.00	0.00	0.00	3.00	20.00	0.00
............................................................ATATTGTCCTGCCACAGCAG..................................................................................................................................................................................	20	1	23.00	0.00	0.00	3.00	20.00	0.00
............................................................ATATTGTCCTGTCAGAGCAGT.................................................................................................................................................................................	21	1	22.00	0.00	0.00	4.00	18.00	0.00
............................................................ATATTGTCCTGGCACAGCAG..................................................................................................................................................................................	20	1	22.00	0.00	0.00	1.00	21.00	0.00
............................................................ATATTGTCCTGTCACAGCAC..................................................................................................................................................................................	20	1	21.00	0.00	0.00	8.00	12.00	1.00
............................................................ATATTGGCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	21.00	0.00	7.00	1.00	13.00	0.00
............................................................AGATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	0.00	0.00	0.00	20.00	0.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	20.00	0.00	2.00	5.00	13.00	0.00
............................................................CTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	0.00	0.00	4.00	16.00	0.00
............................................................ATATTGTCCTGTCACAGCCTT.................................................................................................................................................................................	21	1	20.00	0.00	0.00	2.00	18.00	0.00
............................................................ATATTGCCCTGTCACAGCAG..................................................................................................................................................................................	20	1	20.00	0.00	0.00	1.00	19.00	0.00
............................................................ATAATGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	0.00	0.00	5.00	15.00	0.00
............................................................ATATTGTCCTGTCACATCATT.................................................................................................................................................................................	21	1	19.00	0.00	0.00	4.00	15.00	0.00
............................................................ATATTGTCCTGCCACAGCAGG.................................................................................................................................................................................	21	1	19.00	0.00	1.00	1.00	17.00	0.00
............................................................AGATTGTCCGGTCACAGCAGT.................................................................................................................................................................................	21	1	19.00	0.00	0.00	3.00	16.00	0.00
............................................................ATATTGTCCTGTCACAGCTT..................................................................................................................................................................................	20	1	18.00	0.00	0.00	5.00	13.00	0.00
............................................................ATATTGTCCTGTGACAGCAGT.................................................................................................................................................................................	21	1	18.00	0.00	1.00	2.00	15.00	0.00
............................................................ATATTGTCCTGTCACAGCAGGA................................................................................................................................................................................	22	1	17.00	0.00	4.00	2.00	10.00	1.00
............................................................ATATTGTCCTGCCACACCAGT.................................................................................................................................................................................	21	1	17.00	0.00	0.00	3.00	14.00	0.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	17.00	0.00	1.00	4.00	12.00	0.00

droWil1

TCCATC-TAA----C------------AAAA-------------G-AGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CATTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAG--------CGGAAAAC-------------------------------TCT-ACTTCTGATGATGATAATAATGATTCAAGTCAA-------------------A-	Size	Hit Count	Total Norm	V117 Male body	V118 Embryo	V119 Head	M020 Head
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	91964.00	1661.00	17918.00	68042.00	4343.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	53528.00	43.00	35992.00	13562.00	3931.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	17521.00	41.00	360.00	7671.00	9449.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	4211.00	4.00	38.00	3922.00	247.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	1497.00	3.00	700.00	772.00	22.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	1147.00	7.00	36.00	1069.00	35.00
..................................................................................TAGTAACA-TAT-T--CATTTCGTA.......................................................................................................................................................	21	1	625.00	0.00	412.00	72.00	141.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	485.00	3.00	35.00	137.00	310.00
...........................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................	22	1	406.00	1.00	298.00	30.00	77.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	399.00	2.00	6.00	31.00	360.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	301.00	1.00	13.00	287.00	0.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	276.00	0.00	23.00	253.00	0.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	275.00	0.00	19.00	255.00	1.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	272.00	2.00	5.00	262.00	3.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	259.00	1.00	63.00	160.00	35.00
............................................................CTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	253.00	0.00	6.00	247.00	0.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	243.00	0.00	29.00	213.00	1.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	227.00	0.00	21.00	196.00	10.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	225.00	0.00	6.00	16.00	203.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	185.00	2.00	19.00	158.00	6.00
............................................................ATATTGTCCTGTCACAGCAC..................................................................................................................................................................................	20	1	152.00	0.00	0.00	8.00	144.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	146.00	0.00	9.00	135.00	2.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	144.00	0.00	4.00	140.00	0.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	140.00	0.00	24.00	111.00	5.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	132.00	3.00	24.00	105.00	0.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	128.00	5.00	23.00	93.00	7.00
............................................................ATATTGTCCTGTCACAGCAAT.................................................................................................................................................................................	21	1	127.00	1.00	6.00	120.00	0.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	124.00	2.00	7.00	111.00	4.00
............................................................ATATTGTCATGTCACAGCAGTA................................................................................................................................................................................	22	1	116.00	0.00	69.00	47.00	0.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	112.00	1.00	21.00	89.00	1.00
.............................................................TATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	21	1	109.00	1.00	43.00	62.00	3.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	109.00	2.00	6.00	98.00	3.00
............................................................ATATTGTCCTGTCACAGAAGTA................................................................................................................................................................................	22	1	105.00	0.00	51.00	52.00	2.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	104.00	0.00	17.00	83.00	4.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	103.00	1.00	15.00	87.00	0.00
............................................................ATATTGTCCTGTAACAGCAGTA................................................................................................................................................................................	22	1	102.00	0.00	43.00	51.00	8.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	102.00	3.00	5.00	89.00	5.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	101.00	1.00	8.00	90.00	2.00
............................................................ATATTGTCCTGTCAAAGCAGTA................................................................................................................................................................................	22	1	101.00	0.00	38.00	62.00	1.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	99.00	0.00	11.00	84.00	4.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	98.00	1.00	31.00	65.00	1.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	96.00	1.00	26.00	69.00	0.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	96.00	0.00	52.00	44.00	0.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	93.00	1.00	18.00	36.00	38.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	91.00	2.00	21.00	63.00	5.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	89.00	2.00	18.00	67.00	2.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	87.00	1.00	9.00	76.00	1.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	87.00	0.00	75.00	12.00	0.00
..............................................................ATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	19	1	87.00	3.00	10.00	74.00	0.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	86.00	1.00	19.00	61.00	5.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	86.00	0.00	13.00	73.00	0.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	84.00	0.00	4.00	79.00	1.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	84.00	0.00	10.00	74.00	0.00
............................................................ATATTGTACTGTCACAGCAGTA................................................................................................................................................................................	22	1	83.00	0.00	33.00	49.00	1.00
............................................................ATATTGTCCTTTCACAGCAGTA................................................................................................................................................................................	22	1	82.00	0.00	41.00	15.00	26.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	82.00	1.00	11.00	69.00	1.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	81.00	3.00	13.00	61.00	4.00
............................................................ATATTGTCCxxTCACAGCAGT.................................................................................................................................................................................	19	1	81.00	1.00	11.00	50.00	19.00
............................................................ATATTGCCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	81.00	0.00	65.00	15.00	1.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	80.00	3.00	12.00	63.00	2.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	73.00	3.00	7.00	62.00	1.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	64.00	0.00	8.00	54.00	2.00
..............................................................ATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	20	1	62.00	0.00	34.00	28.00	0.00
............................................................ATATTGTCCCGTCACAGCAGTA................................................................................................................................................................................	22	1	61.00	0.00	36.00	19.00	6.00
............................................................ATATTGTCCTGTCACAGCATTA................................................................................................................................................................................	22	1	60.00	0.00	38.00	22.00	0.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	60.00	1.00	14.00	45.00	0.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	60.00	0.00	43.00	16.00	1.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	59.00	2.00	8.00	49.00	0.00
.................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG--------.................................................................................................	24	1	58.00	0.00	1.00	5.00	52.00
............................................................ATATTTTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	58.00	0.00	43.00	15.00	0.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	58.00	0.00	9.00	46.00	3.00
............................................................ATATTGTCCTGTCGCAGCAGTA................................................................................................................................................................................	22	1	57.00	0.00	39.00	16.00	2.00
............................................................ACATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	55.00	0.00	38.00	16.00	1.00
............................................................ATATTGTCCxxTCACAGCAGTA................................................................................................................................................................................	20	1	55.00	0.00	26.00	13.00	16.00
............................................................ATACTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	55.00	0.00	32.00	23.00	0.00
............................................................ATATCGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	55.00	0.00	30.00	24.00	1.00
............................................................ATATTGTCCTGTCACGGCAGTA................................................................................................................................................................................	22	1	54.00	0.00	41.00	12.00	1.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	49.00	0.00	3.00	46.00	0.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	49.00	0.00	10.00	39.00	0.00
...........................................................................................................CTGCTGAGCCGGGGCATTAAC..................................................................................................................................	21	1	48.00	0.00	33.00	5.00	10.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	48.00	2.00	8.00	38.00	0.00
............................................................CTATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	47.00	0.00	8.00	39.00	0.00
............................................................ATATTGTCCTGTAACAGCAG..................................................................................................................................................................................	20	1	47.00	0.00	1.00	25.00	21.00
............................................................ATATTGTCCTGTCACACCAGTA................................................................................................................................................................................	22	1	47.00	0.00	26.00	21.00	0.00
............................................................ATATTGTCCAGTCACAGCAGT.................................................................................................................................................................................	21	1	46.00	0.00	3.00	43.00	0.00
............................................................ATATTGTCCTGTCACAGCGGTA................................................................................................................................................................................	22	1	46.00	0.00	23.00	22.00	1.00
............................................................ATATTGTCCTGTCACCGCAGTA................................................................................................................................................................................	22	1	45.00	0.00	31.00	14.00	0.00
............................................................ATATTGTCCTGTxxCAGCAGT.................................................................................................................................................................................	19	1	45.00	3.00	11.00	31.00	0.00
............................................................ATATTGTCCTGTCACAGAAG..................................................................................................................................................................................	20	1	43.00	0.00	0.00	41.00	2.00
............................................................ATATTATCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	42.00	0.00	17.00	24.00	1.00
............................................................ATATTGTCCTGTCACAGCGG..................................................................................................................................................................................	20	1	41.00	0.00	0.00	7.00	34.00
............................................................ATATTGTCCTGTCACAGCAGTAAA..............................................................................................................................................................................	24	1	41.00	0.00	9.00	32.00	0.00
............................................................ATATTGTCCTATCACAGCAGTA................................................................................................................................................................................	22	1	41.00	0.00	24.00	15.00	2.00
............................................................ATATTGTTCTGTCACAGCAGTA................................................................................................................................................................................	22	1	40.00	0.00	17.00	23.00	0.00
............................................................ATATTGTCCTGTCACAACAGTA................................................................................................................................................................................	22	1	39.00	0.00	10.00	27.00	2.00
............................................................GTATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	38.00	0.00	21.00	15.00	2.00
............................................................ATATTGTCCCGTCACAGCAG..................................................................................................................................................................................	20	1	36.00	1.00	0.00	19.00	16.00
............................................................ATATTGTCCTGTCACAGCAATA................................................................................................................................................................................	22	1	36.00	0.00	9.00	27.00	0.00
............................................................ATATTGTCCTxTCACAGCAGT.................................................................................................................................................................................	20	1	36.00	0.00	4.00	24.00	8.00
............................................................ATATTGTCATGTCACAGCAG..................................................................................................................................................................................	20	1	36.00	0.00	0.00	34.00	2.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	36.00	0.00	18.00	16.00	2.00

droVir3

TATATC-GTC----G-------------ATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAA-A-----AGCCAGAA-------------------------------------------------------------------A-------------------A-	Size	Hit Count	Total Norm	V116 Male body	V053 Unknown	V047 Embryo	M027 Male body	M028 Head
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	16564.00	1394.00	13430.00	885.00	88.00	767.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	5617.00	63.00	2547.00	7.00	305.00	2695.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	2365.00	58.00	1128.00	652.00	85.00	442.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	683.00	3.00	563.00	2.00	4.00	111.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	538.00	33.00	484.00	8.00	4.00	9.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	271.00	8.00	168.00	5.00	7.00	83.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	161.00	3.00	144.00	12.00	0.00	2.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	151.00	0.00	32.00	3.00	13.00	103.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	100.00	0.00	17.00	0.00	9.00	74.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	100.00	7.00	92.00	0.00	0.00	1.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	100.00	0.00	69.00	24.00	1.00	6.00
............................................................ATATTGTCCTGTCACAGCAC..................................................................................................................................................................................	20	1	86.00	0.00	18.00	0.00	5.00	63.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	71.00	2.00	67.00	2.00	0.00	0.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	70.00	1.00	61.00	4.00	0.00	4.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	70.00	2.00	63.00	3.00	0.00	2.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	66.00	0.00	64.00	1.00	0.00	1.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	61.00	0.00	46.00	15.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	60.00	1.00	55.00	4.00	0.00	0.00
.................................................................................................................................TTGTTGAGCGTCGTTAGCAACC...........................................................................................................	22	1	59.00	0.00	0.00	0.00	0.00	59.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	50.00	2.00	44.00	4.00	0.00	0.00
............................................................AGATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	44.00	0.00	42.00	2.00	0.00	0.00
.................................................................................................................................TTGTTGAGCGTCGTTAGCAAC............................................................................................................	21	1	42.00	0.00	1.00	0.00	1.00	40.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	40.00	0.00	39.00	0.00	0.00	1.00
............................................................ATATTGTCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	40.00	0.00	38.00	2.00	0.00	0.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	39.00	0.00	34.00	5.00	0.00	0.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	36.00	0.00	20.00	9.00	0.00	7.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	34.00	1.00	25.00	7.00	0.00	1.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	34.00	1.00	27.00	6.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCCG..................................................................................................................................................................................	20	1	32.00	0.00	15.00	0.00	1.00	16.00
............................................................ATATTGTCCGGTCACAGCAGT.................................................................................................................................................................................	21	1	31.00	0.00	30.00	0.00	0.00	1.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	29.00	1.00	24.00	3.00	0.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	28.00	0.00	22.00	4.00	0.00	2.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	27.00	1.00	22.00	3.00	0.00	1.00
............................................................ATATTGTCCTGTCACAGCTGT.................................................................................................................................................................................	21	1	27.00	0.00	27.00	0.00	0.00	0.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	26.00	0.00	25.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	26.00	2.00	22.00	0.00	0.00	2.00
...........................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................	22	1	25.00	0.00	12.00	8.00	0.00	5.00
............................................................ATATTGTCCTGTCACAGCGG..................................................................................................................................................................................	20	1	25.00	0.00	6.00	0.00	3.00	16.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	23.00	1.00	21.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	22.00	2.00	19.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	21.00	0.00	19.00	1.00	0.00	1.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	21.00	0.00	17.00	4.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	21.00	0.00	14.00	7.00	0.00	0.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	21.00	0.00	19.00	2.00	0.00	0.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	21.00	0.00	19.00	1.00	0.00	1.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	20.00	1.00	14.00	4.00	0.00	1.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	2.00	17.00	1.00	0.00	0.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	3.00	14.00	2.00	0.00	1.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	19.00	4.00	14.00	0.00	0.00	1.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	19.00	1.00	14.00	4.00	0.00	0.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	19.00	1.00	16.00	2.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	18.00	0.00	7.00	3.00	2.00	6.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	18.00	0.00	16.00	2.00	0.00	0.00
............................................................ATATTGACCTGTCACAGCAG..................................................................................................................................................................................	20	1	17.00	0.00	17.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCCGC.................................................................................................................................................................................	21	1	17.00	0.00	16.00	1.00	0.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	17.00	0.00	17.00	0.00	0.00	0.00
..................................................................................TTGTA-CGTTAAGC--AATTG-GTA.......................................................................................................................................................	21	1	16.00	0.00	0.00	16.00	0.00	0.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	16.00	2.00	13.00	1.00	0.00	0.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	16.00	1.00	15.00	0.00	0.00	0.00
............................................................ATATTGGCCTGTCACAGCAG..................................................................................................................................................................................	20	1	16.00	0.00	14.00	0.00	0.00	2.00
............................................................ATATTGCCCTGTCACAGCAG..................................................................................................................................................................................	20	1	15.00	0.00	10.00	0.00	0.00	5.00
............................................................ATATTGTCCTGTCACAGCAA..................................................................................................................................................................................	20	1	15.00	0.00	14.00	0.00	0.00	1.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	15.00	0.00	12.00	1.00	0.00	2.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	15.00	2.00	13.00	0.00	0.00	0.00
............................................................ATATTGACCTGTCACAGCAGC.................................................................................................................................................................................	21	1	14.00	0.00	14.00	0.00	0.00	0.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	14.00	1.00	12.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	14.00	0.00	5.00	9.00	0.00	0.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	13.00	0.00	11.00	0.00	0.00	2.00
............................................................ATATTGTCCTGTCACAGCAT..................................................................................................................................................................................	20	1	13.00	2.00	10.00	0.00	0.00	1.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	13.00	0.00	13.00	0.00	0.00	0.00
............................................................ATATTGTCCTGCCACAGCAG..................................................................................................................................................................................	20	1	13.00	0.00	10.00	0.00	0.00	3.00
............................................................ATATTGTCCTGTCGCAGCAG..................................................................................................................................................................................	20	1	13.00	1.00	6.00	0.00	1.00	5.00
.............................................................TATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	20	1	13.00	1.00	12.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACTGCAGT.................................................................................................................................................................................	21	1	12.00	1.00	10.00	1.00	0.00	0.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	11.00	0.00	11.00	0.00	0.00	0.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	11.00	0.00	11.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	11.00	2.00	8.00	1.00	0.00	0.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	11.00	0.00	4.00	5.00	0.00	2.00
............................................................AGATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	11.00	0.00	11.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCACC.................................................................................................................................................................................	21	1	11.00	0.00	11.00	0.00	0.00	0.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	11.00	1.00	10.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCT...................................................................................................................................................................................	19	1	10.00	0.00	5.00	0.00	2.00	3.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	10.00	0.00	4.00	6.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCATTA................................................................................................................................................................................	22	1	10.00	0.00	5.00	5.00	0.00	0.00
............................................................ATATTGTCCTGTCACAGCACTA................................................................................................................................................................................	22	1	10.00	0.00	7.00	3.00	0.00	0.00
............................................................ATATTGTCCTGTCACATCACT.................................................................................................................................................................................	21	1	10.00	0.00	8.00	2.00	0.00	0.00
............................................................ATATTGTCCTTTCACAGCAGTA................................................................................................................................................................................	22	1	10.00	0.00	2.00	5.00	1.00	2.00
.......GTC----G-------------ATC-------------GTTGCGCTTGCCAGTG......................................................................................................................................................................................................	23	1	10.00	1.00	1.00	1.00	0.00	7.00
............................................................ATATTCTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	10.00	0.00	9.00	0.00	0.00	1.00
............................................................ATATTGACCTGTCACAGCACT.................................................................................................................................................................................	21	1	10.00	0.00	10.00	0.00	0.00	0.00
..............................................................ATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	19	1	10.00	2.00	8.00	0.00	0.00	0.00
............................................................CTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	10.00	0.00	9.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCTCAGCAGT.................................................................................................................................................................................	21	1	10.00	0.00	9.00	1.00	0.00	0.00
............................................................AGATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	9.00	0.00	9.00	0.00	0.00	0.00
............................................................ATATTGTCCCGTCACAGCAG..................................................................................................................................................................................	20	1	9.00	0.00	4.00	0.00	0.00	5.00
............................................................ATATGGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	9.00	0.00	8.00	1.00	0.00	0.00
............................................................ATATTGTCCTGTCACATCAGC.................................................................................................................................................................................	21	1	9.00	0.00	9.00	0.00	0.00	0.00
............................................................ATAGTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	9.00	0.00	8.00	1.00	0.00	0.00
............................................................ATATTGCCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	9.00	0.00	9.00	0.00	0.00	0.00
............................................................ATATTGGCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	8.00	0.00	8.00	0.00	0.00	0.00
............................................................ATATTGTCCTGTCATAGCAG..................................................................................................................................................................................	20	1	8.00	0.00	6.00	0.00	0.00	2.00

droMoj3

TCTATT-AT-------------------------------------AGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGA--------AGAAATC-------------------------------TA-------------------------ATCGAGTCGACTATGCGGCATACACAGAGG-	Size	Hit Count	Total Norm	V110 Male body	V056 Unknown	V049 Head	V041 Embryo
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	50528.00	3490.00	26365.00	19243.00	1430.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	10704.00	144.00	1732.00	1371.00	7457.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	6613.00	103.00	3479.00	3012.00	19.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	3134.00	123.00	1746.00	1217.00	48.00
............................................................ATATTGTCCTGTCACAGCA...................................................................................................................................................................................	19	1	1265.00	10.00	731.00	520.00	4.00
............................................................ATATTGTCCTGTCACAGCCGT.................................................................................................................................................................................	21	1	684.00	0.00	84.00	584.00	16.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	473.00	14.00	240.00	160.00	59.00
............................................................ATATTGTCCTGTCACCGCAGT.................................................................................................................................................................................	21	1	340.00	1.00	79.00	254.00	6.00
............................................................ATATTGTCCTGTCACATCAGT.................................................................................................................................................................................	21	1	255.00	3.00	109.00	142.00	1.00
............................................................ATATTGTCCTGTCACAGCAGC.................................................................................................................................................................................	21	1	206.00	2.00	151.00	47.00	6.00
............................................................ATATTGGCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	168.00	0.00	111.00	52.00	5.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	159.00	2.00	80.00	77.00	0.00
............................................................ATATTGTCCTGGCACAGCAGT.................................................................................................................................................................................	21	1	145.00	0.00	81.00	59.00	5.00
............................................................ATATTGTCCTGTCACAGCATT.................................................................................................................................................................................	21	1	140.00	2.00	76.00	60.00	2.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	140.00	5.00	86.00	46.00	3.00
............................................................ATATTGTCCTGTCACAGCAGTAT...............................................................................................................................................................................	23	1	139.00	2.00	71.00	56.00	10.00
............................................................ATATTGTCCTGTCACAGCAGTTT...............................................................................................................................................................................	23	1	133.00	2.00	72.00	59.00	0.00
...........................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................	22	1	131.00	2.00	17.00	13.00	99.00
............................................................ATATTGTCCTGTCACAGCCG..................................................................................................................................................................................	20	1	127.00	0.00	11.00	116.00	0.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	126.00	1.00	77.00	45.00	3.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	124.00	2.00	68.00	53.00	1.00
............................................................ATATTGTCCTGTCCCAGCAGT.................................................................................................................................................................................	21	1	123.00	0.00	39.00	83.00	1.00
............................................................ATATTGTCCTGTCACAGCGGT.................................................................................................................................................................................	21	1	118.00	4.00	70.00	41.00	3.00
............................................................ATATTGTCCTGTCACAGCCGTA................................................................................................................................................................................	22	1	110.00	0.00	5.00	40.00	65.00
............................................................ATATTGTCCTGTCACAGCAGTC................................................................................................................................................................................	22	1	97.00	0.00	37.00	39.00	21.00
............................................................ATATTGTCCTTTCACAGCAGT.................................................................................................................................................................................	21	1	91.00	3.00	22.00	66.00	0.00
............................................................ATATTGTCCTGTCACACCAGT.................................................................................................................................................................................	21	1	91.00	0.00	63.00	24.00	4.00
............................................................ATATTGTCCTGTTACAGCAGT.................................................................................................................................................................................	21	1	86.00	3.00	38.00	42.00	3.00
............................................................ATACTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	86.00	3.00	52.00	31.00	0.00
............................................................ATATTGTCCTGTCACCGCCGT.................................................................................................................................................................................	21	1	81.00	0.00	4.00	77.00	0.00
............................................................ATATTGTCCTGTCGCAGCAGT.................................................................................................................................................................................	21	1	75.00	2.00	45.00	27.00	1.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	72.00	1.00	43.00	26.00	2.00
............................................................ATATTGTCCTGTCACAGCACT.................................................................................................................................................................................	21	1	70.00	0.00	33.00	35.00	2.00
............................................................AGATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	70.00	0.00	37.00	33.00	0.00
............................................................ATATTGTCCTGTCAAAGCAGT.................................................................................................................................................................................	21	1	69.00	0.00	48.00	19.00	2.00
............................................................ATATTATCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	69.00	0.00	29.00	37.00	3.00
............................................................ATATCGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	69.00	2.00	44.00	22.00	1.00
............................................................ATATTGTACTGTCACAGCAGT.................................................................................................................................................................................	21	1	65.00	3.00	39.00	21.00	2.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	64.00	2.00	48.00	14.00	0.00
............................................................ATATTGTCCTGTCACAGCTGT.................................................................................................................................................................................	21	1	63.00	0.00	42.00	21.00	0.00
............................................................ATATTGTCCTGTCACGGCAGT.................................................................................................................................................................................	21	1	62.00	2.00	36.00	21.00	3.00
............................................................ATGTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	60.00	2.00	34.00	24.00	0.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	58.00	0.00	32.00	22.00	4.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	57.00	1.00	30.00	25.00	1.00
............................................................GTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	56.00	4.00	26.00	25.00	1.00
............................................................ATATTGTCCTCTCACAGCAGT.................................................................................................................................................................................	21	1	55.00	0.00	24.00	30.00	1.00
............................................................ATATTGTCCTGTCACCGCAG..................................................................................................................................................................................	20	1	55.00	0.00	8.00	47.00	0.00
............................................................ACATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	54.00	4.00	26.00	23.00	1.00
............................................................ATATTGTCATGTCACAGCAGT.................................................................................................................................................................................	21	1	53.00	1.00	31.00	15.00	6.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	53.00	2.00	23.00	27.00	1.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	52.00	0.00	41.00	8.00	3.00
............................................................ATATTGTCCTGTCACAGCCGTT................................................................................................................................................................................	22	1	49.00	0.00	8.00	38.00	3.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	48.00	1.00	19.00	25.00	3.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	48.00	0.00	34.00	13.00	1.00
............................................................ATAGTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	45.00	0.00	32.00	13.00	0.00
............................................................ATATTGTCCTGTCACCGCAGTA................................................................................................................................................................................	22	1	45.00	0.00	4.00	19.00	22.00
............................................................ATATTGTCCTGTCACATCAG..................................................................................................................................................................................	20	1	45.00	0.00	20.00	25.00	0.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	44.00	2.00	24.00	18.00	0.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	44.00	1.00	29.00	13.00	1.00
...........................................................CATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	22	1	41.00	1.00	23.00	15.00	2.00
............................................................ATATTGTCCTGTCACAGCAT..................................................................................................................................................................................	20	1	41.00	0.00	20.00	21.00	0.00
............................................................ATCTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	40.00	3.00	23.00	13.00	1.00
............................................................ATATTGTCCGGTCACAGCAGT.................................................................................................................................................................................	21	1	39.00	0.00	30.00	9.00	0.00
............................................................TTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	38.00	0.00	27.00	10.00	1.00
............................................................ATATTGTCCTGTCACAGCAGCA................................................................................................................................................................................	22	1	36.00	0.00	4.00	5.00	27.00
............................................................ATATTGTCATGTCACAGCAGTA................................................................................................................................................................................	22	1	34.00	0.00	4.00	1.00	29.00
............................................................ATATTGGCCTGTCACAGCAG..................................................................................................................................................................................	20	1	32.00	0.00	21.00	11.00	0.00
............................................................ATATTGTTCTGTCACAGCAGT.................................................................................................................................................................................	21	1	32.00	1.00	18.00	13.00	0.00
............................................................ATATTTTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	30.00	5.00	10.00	15.00	0.00
............................................................ATATTGTCCTGCCACAGCAGTA................................................................................................................................................................................	22	1	28.00	0.00	5.00	5.00	18.00
............................................................ATATTGTCCTGTCACTGCAGT.................................................................................................................................................................................	21	1	28.00	1.00	14.00	11.00	2.00
............................................................ATATTGGCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	27.00	0.00	2.00	4.00	21.00
............................................................ATATTGTCCTGTCACAGCAGCT................................................................................................................................................................................	22	1	26.00	0.00	11.00	7.00	8.00
............................................................ATATTGTCCTGTCACAGCAGTGT...............................................................................................................................................................................	23	1	26.00	0.00	15.00	11.00	0.00
............................................................ATATTGTCCTGTCCCAGCAG..................................................................................................................................................................................	20	1	25.00	0.00	6.00	19.00	0.00
............................................................ATATTGTCCTGTCACAGCAGGA................................................................................................................................................................................	22	1	25.00	0.00	2.00	6.00	17.00
............................................................ATATTGTCCTGTCCCAGCCGT.................................................................................................................................................................................	21	1	25.00	0.00	2.00	22.00	1.00
............................................................ATATGGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	24.00	0.00	16.00	7.00	1.00
............................................................ATATTGTCCTGTCACATCAGTA................................................................................................................................................................................	22	1	24.00	0.00	3.00	10.00	11.00
............................................................CTATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	24.00	1.00	10.00	13.00	0.00
............................................................ATATTGTCCTGTCACAGCGGTA................................................................................................................................................................................	22	1	24.00	1.00	6.00	4.00	13.00
............................................................ATATTGTCCTGTCACATCAGTT................................................................................................................................................................................	22	1	23.00	1.00	4.00	16.00	2.00
............................................................ATATTGCCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	23.00	0.00	3.00	4.00	16.00
............................................................ATATTGTCCTGTCACCGCAGTT................................................................................................................................................................................	22	1	23.00	0.00	6.00	17.00	0.00
............................................................ATATTGTCCTGTCACAGC....................................................................................................................................................................................	18	1	23.00	0.00	12.00	11.00	0.00
............................................................ATATTGTCCTGGCACAGCAGTA................................................................................................................................................................................	22	1	23.00	0.00	6.00	4.00	13.00
............................................................ATATTGTCCTGTCTCAGCAGT.................................................................................................................................................................................	21	1	22.00	1.00	14.00	6.00	1.00
............................................................ATATTGTCCTGACACAGCAGT.................................................................................................................................................................................	21	1	22.00	2.00	17.00	3.00	0.00
............................................................ATATTGTCCTGTCACAGCAAT.................................................................................................................................................................................	21	1	21.00	1.00	9.00	10.00	1.00
............................................................ATATTGGCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	21.00	0.00	7.00	14.00	0.00
............................................................ATATTGTCCTGTCCCAGCAGTA................................................................................................................................................................................	22	1	21.00	0.00	2.00	7.00	12.00
............................................................ATATTGTCCTGTTACAGCAGTA................................................................................................................................................................................	22	1	20.00	1.00	2.00	5.00	12.00
............................................................ATATTGTCCTGTCACACCAG..................................................................................................................................................................................	20	1	20.00	0.00	11.00	9.00	0.00
............................................................ATATTGTCCTTTCACAGCAG..................................................................................................................................................................................	20	1	20.00	0.00	1.00	19.00	0.00
............................................................ATATTGTGCTGTCACAGCAGT.................................................................................................................................................................................	21	1	20.00	0.00	13.00	7.00	0.00
............................................................ATATTGTCCTGCCACAGCAG..................................................................................................................................................................................	20	1	20.00	1.00	6.00	13.00	0.00
............................................................ATATTGTCCTGTTACATCAGT.................................................................................................................................................................................	21	1	19.00	0.00	2.00	17.00	0.00
............................................................ATATTGTCCTGTCACAGGAGT.................................................................................................................................................................................	21	1	19.00	1.00	10.00	8.00	0.00
............................................................ATATTGTCCTGTCACATCATT.................................................................................................................................................................................	21	1	19.00	0.00	8.00	11.00	0.00
............................................................ATATTGTCCTGTCACAGCAGTG................................................................................................................................................................................	22	1	19.00	0.00	7.00	3.00	9.00
............................................................ATATTGTCCTGTCACAGCAGTTG...............................................................................................................................................................................	23	1	19.00	1.00	13.00	5.00	0.00

droGri2

TATATT--------T------------AATC-------------GTTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC--AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGC-------------------------------------------------------------------A-------------------GC	Size	Hit Count	Total Norm	V109 Male body
............................................................ATATTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	360.00	360.00
............................................................ATATTGTCCTGTCACAGCAGTA................................................................................................................................................................................	22	1	11.00	11.00
............................................................ATATTGTCCTGTCACAGCAG..................................................................................................................................................................................	20	1	4.00	4.00
............................................................ATATTGTCCTGTCACAGAAGT.................................................................................................................................................................................	21	1	4.00	4.00
............................................................ATATTGTCCTATCACAGCAGT.................................................................................................................................................................................	21	1	3.00	3.00
............................................................ATATTGTCCTGTCACAGTAGT.................................................................................................................................................................................	21	1	2.00	2.00
............................................................ATATTCTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	2.00	2.00
............................................................ATATTGTCCTGTCACAGCAGTAA...............................................................................................................................................................................	23	1	2.00	2.00
............................................................ATATTGTCCTGCCACAGCAGT.................................................................................................................................................................................	21	1	2.00	2.00
............................................................ATATTGTCCTGTCACAGAAGTA................................................................................................................................................................................	22	1	1.00	1.00
............................................................ATATTGTCCTxTCACAGCAGT.................................................................................................................................................................................	20	1	1.00	1.00
............................................................ATTTTGTCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCTTGTCACAGCAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCGTGTCACAGCAG..................................................................................................................................................................................	20	1	1.00	1.00
............................................................ATATTGTCCTGTCACAGCAGG.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCCTGTAACAGCAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCCCGTCACAGCAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCCTGTCATAGCAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGCCCTGTCACAGCAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCCTGTCACAGCTA..................................................................................................................................................................................	20	1	1.00	1.00
...........................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................	22	1	1.00	1.00
............................................................ATATTGTCCTGTCACAACAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGACCTGTCACAGCAGT.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCCTGTCACAGCAGA.................................................................................................................................................................................	21	1	1.00	1.00
............................................................ATATTGTCCTGTCACAGCAGTT................................................................................................................................................................................	22	1	1.00	1.00

Generated: 04/20/2012 at 05:22:34 EDT

dme-mir-1000

chr3R:21414581-21414680 -

Known_mirbase

antisense_to_intron

20-way Fast Statistical Aligner (FSA) re-alignment

Visually pleasing best hits from LASTZ and MAF

Legend

Re-alignment after removal of non-confident orthologs

20-way Secondary Structure

Small RNA-seq read pileup