Data Used in Gronau et al. Nat Genet 2011
File | Description | Size | Last updated |
| locus-list-sorted.bed.gz | List of 37,574 1kb long genomic loci used in demographic analysis | 0.3 MB | Nov 04, 2011 |
| neutralLoci-7genomes.txt.gz | Alignments of the seven human individuals and chimp across the 37,574 1kb long loci used in demographic analysis | 18 MB | Nov 04, 2011 |
| individualGenomes.tar.gz | Genome-wide genotype data for the seven human individual genomes studied in the paper: Venter, YH, SJK, ABT, KB1, NA18507, and NA12891 (see README file) | 409.3 MB | May 17, 2012 |
| genomicFilters.tar.gz | Genome-wide filters: mappability, selection, etc. (see README file) | 53.3 MB | May 17, 2012 |
| filter_CpG.bed.gz | Positions of genome-wide CpG site pairs that are masked in demographic analysis | 175.7 MB | May 17, 2012 |
| panTro2.tar.gz | Alignment of chimpanzee genome (PanTro2) to human reference (one file for differences and one file for 'N's) | 199.6 MB | May 17, 2012 |
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- All genomic positions are given in 0-based coordinates for hg18 (NCMI human genome build 36).
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| G-PhoCS |
Generalized Phylogenetic Coalescent Sampler for demographic analysis. |
| BSNP |
A Bayesian SNP caller from short read data with reduced reference bias. |
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Gronau I, Hubisz MJ, Gulko B, Danko CG, Siepel A. Bayesian inference of ancient human demography from individual genome sequences. Nature Genetics 43 1031–1034. 2011
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ContactFor questions not answered in our paper and supplementary material, please contact ilan.gronau@idc.ac.il |
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