mir-580
chr5:36183731-36183867
View MI0003587 at mirBase
 

  ▼▲   Show/Hide Alignment

Color Code:    mir sequence   mir* sequence   predicted mir*   mutation

Species Sequence
view Human AUACA-------------------GAUAUGUGAAG-------------UUAGAUAAAAUUUCCAAUUGGAACCUAAUGAUUCAUCAGACUCAGAUAUUUAAGUUAACAGUAUUU---GAGAAUG----AUGAAUCA-UUAGGUUCCGGUC-AGAAAUUUUUCAUUCAGUUUCAGAAUAUACA-------------------GAUAUGUGAAG-------------UUAGAUAAAAUUUCCAAUUGGAACCUAAUGAUUCAUCAGACUCAGAUAUUUAAGUUAACAGUAUUU---GAGAAUG----AUGAAUCA-UUAGGUUCCGGUC-AGAAAUUUUUCAUUCAGUUUCAGAAUAUACA-------------------GAUAUGUGAAG-------------UUAGAUAAAAUUUCCAAUUGGAACCUAAUGAUUCAUCAGACUCAGAUAUUUAAGUUAACAGUAUUU---GAGAAUG----AUGAAUCA-UUAGGUUCCGGUC-AGAAAUUUUUCAUUCAGUUUCAGAAU
view Chimp AUACA-------------------GAUACGUGAAG-------------UUAGAUAAAAUUU=================================UAUUUAAGUUAACAGUAUUU---GAGAAUG----AUGAAUCA-UUAGGUUCCAGUC-AGAAAUUUUUCAUUCAGUUUCAGAAUAUACA-------------------GAUACGUGAAG-------------UUAGAUAAAAUUU=================================UAUUUAAGUUAACAGUAUUU---GAGAAUG----AUGAAUCA-UUAGGUUCCAGUC-AGAAAUUUUUCAUUCAGUUUCAGAAUAUACA-------------------GAUACGUGAAG-------------UUAGAUAAAAUUU=================================UAUUUAAGUUAACAGUAUUU---GAGAAUG----AUGAAUCA-UUAGGUUCCAGUC-AGAAAUUUUUCAUUCAGUUUCAGAAU
view Rhesus AUACA-------------------GAUAUGUGAAG-------------UUAGAUAAAAUUU=================================UAUUUAAGUUAACAGUAUUU---GAGUCUG----AUGAAUCA-UUAGGUUCCAGUC-AGAAAUUUUUCAUUCAGUUUCAGAAUAUACA-------------------GAUAUGUGAAG-------------UUAGAUAAAAUUU=================================UAUUUAAGUUAACAGUAUUU---GAGUCUG----AUGAAUCA-UUAGGUUCCAGUC-AGAAAUUUUUCAUUCAGUUUCAGAAUAUACA-------------------GAUAUGUGAAG-------------UUAGAUAAAAUUU=================================UAUUUAAGUUAACAGUAUUU---GAGUCUG----AUGAAUCA-UUAGGUUCCAGUC-AGAAAUUUUUCAUUCAGUUUCAGAAU
view Bushbaby ==============================================================================================--------UUAACAGUAUCU---GAGUCUG----AUGAAUCA-UUAGGUUCUGCUC-AGAAAUUUUUCAUAUAGCAUGAGAAU==============================================================================================--------UUAACAGUAUCU---GAGUCUG----AUGAAUCA-UUAGGUUCUGCUC-AGAAAUUUUUCAUAUAGCAUGAGAAU==============================================================================================--------UUAACAGUAUCU---GAGUCUG----AUGAAUCA-UUAGGUUCUGCUC-AGAAAUUUUUCAUAUAGCAUGAGAAU
view Tree Shrew AUACA-------------------UAUUUAUG-----------------------------=================================--------GUAACACUAU-----GCAUCUG----AUGAAUCA-UUAGGUUCUAGUU-GGAAAUUUUUCAAUCAAUUUCAGAAUAUACA-------------------UAUUUAUG-----------------------------=================================--------GUAACACUAU-----GCAUCUG----AUGAAUCA-UUAGGUUCUAGUU-GGAAAUUUUUCAAUCAAUUUCAGAAUAUACA-------------------UAUUUAUG-----------------------------=================================--------GUAACACUAU-----GCAUCUG----AUGAAUCA-UUAGGUUCUAGUU-GGAAAUUUUUCAAUCAAUUUCAGAAU
view Horse ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Armadillo AUAUAUAUUUGACUAUGAACCAAAUAUGUAUACAGCAUAUUGUGUGAUUCAAAAAAAAUUU=================================UAUUUGAGCUGACACUAUCU---GAGUCUG----AAGACUCA-UUAAAUUCUACUC-AGAAAUUUUUUAUUCAGUUUUGAAAUAUAUAUAUUUGACUAUGAACCAAAUAUGUAUACAGCAUAUUGUGUGAUUCAAAAAAAAUUU=================================UAUUUGAGCUGACACUAUCU---GAGUCUG----AAGACUCA-UUAAAUUCUACUC-AGAAAUUUUUUAUUCAGUUUUGAAAUAUAUAUAUUUGACUAUGAACCAAAUAUGUAUACAGCAUAUUGUGUGAUUCAAAAAAAAUUU=================================UAUUUGAGCUGACACUAUCU---GAGUCUG----AAGACUCA-UUAAAUUCUACUC-AGAAAUUUUUUAUUCAGUUUUGAAAU
view Cat ---GA-------------------CACAUUUAAAU-------------UUACACAA-----=================================--------------------UCUGAGCCUG----AUGAAUCA-CUAGGUUCUAGCU-AGAAAUCUUUCAUUCAGUUUUGGAAC---GA-------------------CACAUUUAAAU-------------UUACACAA-----=================================--------------------UCUGAGCCUG----AUGAAUCA-CUAGGUUCUAGCU-AGAAAUCUUUCAUUCAGUUUUGGAAC---GA-------------------CACAUUUAAAU-------------UUACACAA-----=================================--------------------UCUGAGCCUG----AUGAAUCA-CUAGGUUCUAGCU-AGAAAUCUUUCAUUCAGUUUUGGAAC
view Dog ---GA-------------------UACAU---AGA-------------UUAUGCA------=================================-----------------------GAGUUUG----AUUAAUCA-CUGAGUUCUGGCU-AGAAAUUUUUCAUUCAGUUUCAGAAU---GA-------------------UACAU---AGA-------------UUAUGCA------=================================-----------------------GAGUUUG----AUUAAUCA-CUGAGUUCUGGCU-AGAAAUUUUUCAUUCAGUUUCAGAAU---GA-------------------UACAU---AGA-------------UUAUGCA------=================================-----------------------GAGUUUG----AUUAAUCA-CUGAGUUCUGGCU-AGAAAUUUUUCAUUCAGUUUCAGAAU
view Elephant GUACA--------------------------------------------------------=================================UAUUGCAGUUGACACUCUCC---GAGUCUG----AUGAAUCA-UUAGGUUCUAGUU--GAAAUUUUUCAUUCAGUUUCAGAAUGUACA--------------------------------------------------------=================================UAUUGCAGUUGACACUCUCC---GAGUCUG----AUGAAUCA-UUAGGUUCUAGUU--GAAAUUUUUCAUUCAGUUUCAGAAUGUACA--------------------------------------------------------=================================UAUUGCAGUUGACACUCUCC---GAGUCUG----AUGAAUCA-UUAGGUUCUAGUU--GAAAUUUUUCAUUCAGUUUCAGAAU
view Cow ---GG-------------------CACAUAUUUAA-------------UUUAACA------=================================-----------------------AAGCCUGUGUGAUGAAUCA-UUAGGU-CUAGUU-GAAAAUUUUUUAUUCACUUUCAGAGU---GG-------------------CACAUAUUUAA-------------UUUAACA------=================================-----------------------AAGCCUGUGUGAUGAAUCA-UUAGGU-CUAGUU-GAAAAUUUUUUAUUCACUUUCAGAGU---GG-------------------CACAUAUUUAA-------------UUUAACA------=================================-----------------------AAGCCUGUGUGAUGAAUCA-UUAGGU-CUAGUU-GAAAAUUUUUUAUUCACUUUCAGAGU
view Rabbit ---AU-------------------GUUAUAUAA---------------CUGAGUAAAGAUA=================================--------UUAAUGCUUUCU---GAGUCUG----GUGAAUUUGUUAGGUUCUAA---CCAAAUUUUUCAUUCA-GUUCAGAAU---AU-------------------GUUAUAUAA---------------CUGAGUAAAGAUA=================================--------UUAAUGCUUUCU---GAGUCUG----GUGAAUUUGUUAGGUUCUAA---CCAAAUUUUUCAUUCA-GUUCAGAAU---AU-------------------GUUAUAUAA---------------CUGAGUAAAGAUA=================================--------UUAAUGCUUUCU---GAGUCUG----GUGAAUUUGUUAGGUUCUAA---CCAAAUUUUUCAUUCA-GUUCAGAAU
view Guinea Pig ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view HedgeHog ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Mouse ---UA-------------------GGCAUCUGAAG----------GCCCUGAAUAAAAGAA=================================--------UUAAUAUC-------AAUUCUG----GUGAAUCU-UUAGGUCUUGAUGGCCAAAUUUCUUAUUGA-UUUCAGAAU---UA-------------------GGCAUCUGAAG----------GCCCUGAAUAAAAGAA=================================--------UUAAUAUC-------AAUUCUG----GUGAAUCU-UUAGGUCUUGAUGGCCAAAUUUCUUAUUGA-UUUCAGAAU---UA-------------------GGCAUCUGAAG----------GCCCUGAAUAAAAGAA=================================--------UUAAUAUC-------AAUUCUG----GUGAAUCU-UUAGGUCUUGAUGGCCAAAUUUCUUAUUGA-UUUCAGAAU
view Shrew ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Rat AUUCA-------------------GGCGUCUGAAG----------GUCCUGAAUAAAGGAA=================================--------UUAAAACC-------AACUUUG----AUGAAUCC-UUAGAUCUUGAUGGCCAAAUUUCUUACUGG-UUUCAGAAUAUUCA-------------------GGCGUCUGAAG----------GUCCUGAAUAAAGGAA=================================--------UUAAAACC-------AACUUUG----AUGAAUCC-UUAGAUCUUGAUGGCCAAAUUUCUUACUGG-UUUCAGAAUAUUCA-------------------GGCGUCUGAAG----------GUCCUGAAUAAAGGAA=================================--------UUAAAACC-------AACUUUG----AUGAAUCC-UUAGAUCUUGAUGGCCAAAUUUCUUACUGG-UUUCAGAAU
view Tenrec ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Opossum ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Platypus ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Chicken ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Lizard ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Frog ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Zebrafish ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Stickleback ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Tetradon ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Fugu ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Medaka ===================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================================

There are no comments yet

Leave a Comment


?
?

Powered by TalkBack