mir-549
chr15:78921354-78921489
View MI0003679 at mirBase
 

  ▼▲   Show/Hide Alignment

Color Code:    mir sequence   mir* sequence   predicted mir*   mutation

Species Sequence
view Human CUGGCAUCACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAAAUCAGUGACAACUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGGCAUUUUCCCUGGCAUCACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAAAUCAGUGACAACUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGGCAUUUUCCCUGGCAUCACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAAAUCAGUGACAACUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGGCAUUUUCC
view Chimp CUGGCAUCACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAGAUCAGUGACAACUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGGCAUUUUCCCUGGCAUCACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAGAUCAGUGACAACUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGGCAUUUUCCCUGGCAUCACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAGAUCAGUGACAACUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGGCAUUUUCC
view Rhesus UUGGCAUAACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAGAUCA-UGACAAUUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGACAUUUUCCUUGGCAUAACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAGAUCA-UGACAAUUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGACAUUUUCCUUGGCAUAACAUCUUCUGAUAGACA-----UGCAACUCAAGA-----AUAUAUUGAGAGCUCAUCCAUAGUUGUCACUGUCUCAGAUCA-UGACAAUUAUGGAUGAGCUCUUAAUA--------UAUC--CCAGGCACU-GUGCUAGACAUUUUCC
view Bushbaby CUGGCAUUGCAUCUUCUGAUAGAAA-----UUCAACUCAAAA--------------------------------CAC-AUCUCAGAUCAAUGGCAACUAUUGAUUUGCUCUUCAUAAUAUAUAGUACA--CCAGGCACU-GCACAGGUCAUGUCCCCUGGCAUUGCAUCUUCUGAUAGAAA-----UUCAACUCAAAA--------------------------------CAC-AUCUCAGAUCAAUGGCAACUAUUGAUUUGCUCUUCAUAAUAUAUAGUACA--CCAGGCACU-GCACAGGUCAUGUCCCCUGGCAUUGCAUCUUCUGAUAGAAA-----UUCAACUCAAAA--------------------------------CAC-AUCUCAGAUCAAUGGCAACUAUUGAUUUGCUCUUCAUAAUAUAUAGUACA--CCAGGCACU-GCACAGGUCAUGUCCC
view Tree Shrew CUGGCACUGCAUCUUCUGGGAGAAA-----CGGCACUCAGGA-----AGA----------------------------GCCUCUGCUCCGUGA-GACUCUAGGUUAGCUCUGAAUG--------UCUA--CCAGGCACC-GUACGCGGCACUUUC-CUGGCACUGCAUCUUCUGGGAGAAA-----CGGCACUCAGGA-----AGA----------------------------GCCUCUGCUCCGUGA-GACUCUAGGUUAGCUCUGAAUG--------UCUA--CCAGGCACC-GUACGCGGCACUUUC-CUGGCACUGCAUCUUCUGGGAGAAA-----CGGCACUCAGGA-----AGA----------------------------GCCUCUGCUCCGUGA-GACUCUAGGUUAGCUCUGAAUG--------UCUA--CCAGGCACC-GUACGCGGCACUUUC-
view Horse CUCGCAUUGCAUCUUCUGUUAGAAA-----UUCACAUCAAGAA---GAGUGGGAGA------------------------------UCAAUUACAACCAUUGAUUAACUCUUAACA--------CAUC--UCAGGGACU-GUGCCAGGCACUUGGCCUCGCAUUGCAUCUUCUGUUAGAAA-----UUCACAUCAAGAA---GAGUGGGAGA------------------------------UCAAUUACAACCAUUGAUUAACUCUUAACA--------CAUC--UCAGGGACU-GUGCCAGGCACUUGGCCUCGCAUUGCAUCUUCUGUUAGAAA-----UUCACAUCAAGAA---GAGUGGGAGA------------------------------UCAAUUACAACCAUUGAUUAACUCUUAACA--------CAUC--UCAGGGACU-GUGCCAGGCACUUGGC
view Armadillo ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Cat CUGGCAUGACAUCUUCUGUGAGAAA-----UGCAAAUCAAGA=========================================---UCAGUGAGAGCUACUGAUUAGCU-GUACUC--------CACG--CCAGGUACC-GUGU--------CGCUCUGGCAUGACAUCUUCUGUGAGAAA-----UGCAAAUCAAGA=========================================---UCAGUGAGAGCUACUGAUUAGCU-GUACUC--------CACG--CCAGGUACC-GUGU--------CGCUCUGGCAUGACAUCUUCUGUGAGAAA-----UGCAAAUCAAGA=========================================---UCAGUGAGAGCUACUGAUUAGCU-GUACUC--------CACG--CCAGGUACC-GUGU--------CGCU
view Dog CUGGCCCUGCAGCCUUUGUUAGAAA-----UGCAAUU-----UUGAGAGAUGGGGA------------------------------UUGAUGACAACUACUGAUCAGCUCUUACUG--------UUCA--CCAGGUACU-GUGU-AGGCACUCACUCUGGCCCUGCAGCCUUUGUUAGAAA-----UGCAAUU-----UUGAGAGAUGGGGA------------------------------UUGAUGACAACUACUGAUCAGCUCUUACUG--------UUCA--CCAGGUACU-GUGU-AGGCACUCACUCUGGCCCUGCAGCCUUUGUUAGAAA-----UGCAAUU-----UUGAGAGAUGGGGA------------------------------UUGAUGACAACUACUGAUCAGCUCUUACUG--------UUCA--CCAGGUACU-GUGU-AGGCACUCACU
view Elephant -UAGCAUU-CAUCUUCUGAUAGAAA-----UUUAAAUCGAG-=========================================----------------------------CAACA--------CACG--UCGGGCACU-GUGCUAUGUGCUUUUC-UAGCAUU-CAUCUUCUGAUAGAAA-----UUUAAAUCGAG-=========================================----------------------------CAACA--------CACG--UCGGGCACU-GUGCUAUGUGCUUUUC-UAGCAUU-CAUCUUCUGAUAGAAA-----UUUAAAUCGAG-=========================================----------------------------CAACA--------CACG--UCGGGCACU-GUGCUAUGUGCUUUUC
view Cow AUGGCAUUGUAUCCUCUGUUAAAAA-----UUCAAAUCAAGA=========================================---UCAAUGACAAAUAUAGAUUAGCUGUUAACA--------UAUGUGCCAUGUACU-GUGUCAGGCAUCUUCCAUGGCAUUGUAUCCUCUGUUAAAAA-----UUCAAAUCAAGA=========================================---UCAAUGACAAAUAUAGAUUAGCUGUUAACA--------UAUGUGCCAUGUACU-GUGUCAGGCAUCUUCCAUGGCAUUGUAUCCUCUGUUAAAAA-----UUCAAAUCAAGA=========================================---UCAAUGACAAAUAUAGAUUAGCUGUUAACA--------UAUGUGCCAUGUACU-GUGUCAGGCAUCUUCC
view Rabbit CUGGCAUCGCAUCUUCGGAUGGAAAGGGUCUGAGACCAAGGA-----CAGC-------------------------------------------------------------------------GGCU--CUUAGCACCUAGCCUGGGCCCUUUGCCUGGCAUCGCAUCUUCGGAUGGAAAGGGUCUGAGACCAAGGA-----CAGC-------------------------------------------------------------------------GGCU--CUUAGCACCUAGCCUGGGCCCUUUGCCUGGCAUCGCAUCUUCGGAUGGAAAGGGUCUGAGACCAAGGA-----CAGC-------------------------------------------------------------------------GGCU--CUUAGCACCUAGCCUGGGCCCUUUGC
view Guinea Pig CUGGAAAAGCAUCGUCUU-UAAAAAGCACCUGGUUC--AGUA-----CAAUUUCUAUGGAACCUUCG-----------GUCCCUG---------------------------------------UGUG--CCAAGCACU-AGGCUACCUGC-----CUGGAAAAGCAUCGUCUU-UAAAAAGCACCUGGUUC--AGUA-----CAAUUUCUAUGGAACCUUCG-----------GUCCCUG---------------------------------------UGUG--CCAAGCACU-AGGCUACCUGC-----CUGGAAAAGCAUCGUCUU-UAAAAAGCACCUGGUUC--AGUA-----CAAUUUCUAUGGAACCUUCG-----------GUCCCUG---------------------------------------UGUG--CCAAGCACU-AGGCUACCUGC-----
view HedgeHog ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Mouse ===================================================================================------------------GUGUAGCUUAUAAUC--------UGUU--CCAGGGACC-AUGCUAGGUACUUUCC===================================================================================------------------GUGUAGCUUAUAAUC--------UGUU--CCAGGGACC-AUGCUAGGUACUUUCC===================================================================================------------------GUGUAGCUUAUAAUC--------UGUU--CCAGGGACC-AUGCUAGGUACUUUCC
view Shrew ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Rat ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Tenrec ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Opossum ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Platypus ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Chicken ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Lizard ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Frog ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Zebrafish ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Stickleback ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Tetradon ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Fugu ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================
view Medaka ====================================================================================================================================================================================================================================================================================================================================================================================================================================================================================

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