ID: uc002ndi.2
GENE: TPM4(4)
chr19:16198637-16198886+


(4)
AGO2.ip 		(1)
AGO3.ip 		(3)
B-CELL 		(2)
BRAIN 		(16)
BREAST 		(31)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(6)
HEART 		(8)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(48)
SKIN 		(1)
XRN.ip

Sense strand
GCCGAGACTGTGCCACTGCACTCCAGCCTGGGCAACAGAGGGAGACTCCGTCCCCCTGCAAAAAAAAGAAACACCAGAAAAACCCATGTTGCAGCTGGTCTAGGGGTCTGGGTGGGGCATCATTGGGGGCTGTCTGCAGTGGATGGGAGAGGACACGGCTGGTGGGGATCGGGCTCAGCTGGGCCTTTCTGTCTCTGCAGGTAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGA
.....................................................................................................................................((((((.((((.(((((((...((((((((.........)).))))))..)))))))))))))))))..................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189787TAX577744(Rovira)
total RNA. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040035(GSM532920)
G001T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR040038(GSM532923)
G531N. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		TAX577746(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR040022(GSM532907)
G575N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGT.................................................22136.0027.0011.00---1.003.001.00----1.001.00--2.00-1.00-1.00--1.00----2.001.001.00--2.00-2.00-----------1.00-------------1.00-1.00-------1.00------------1.00--------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAG..................................................21127.0027.001.00--2.001.00----3.00----2.001.00--1.001.001.00-1.001.002.00---1.001.001.00-------------------1.00----1.00--1.00----1.00------------1.00-1.00---1.00---------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGTA................................................23112.0027.007.00-----1.00------------------------------------------1.00-----------------1.001.00------1.00----------------------------------------------------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGCAGT.................................................23111.006.007.00----1.001.00----------------1.00-----------------1.00--------------------------------------------------------------------------------------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGCAG..................................................2216.006.00-----1.00---------------1.00--------1.00--1.00------------------1.00-------------------1.00-------------------------------------------------------
......................................................................................................................................TGCAGTGGATGGGAGAGGACACGGCTGGTGGGGATCGGGCTCAGCTGGGCCTTTCTGTCTCT......................................................6214.004.00-------4.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGA.................................................2213.0027.00------------------------------------1.00-------------------1.00----------------1.00------------------------------------------------------
....AGACTGTGCCACTGCACTCCAGCCGGGC..........................................................................................................................................................................................................................283.000.00--3.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGTT................................................2313.0027.00-------------1.00--2.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGCAGA.................................................2313.006.00-----------------------------------1.00-1.00-----------------------------------------------1.00------------------------------------------
...............................................................................................TGGTCTAGGGGTCTG............................................................................................................................................1562.672.67-----------0.83------0.33-0.170.17--------------------------------------------------------------------0.83-------------------0.17----------0.17------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGCAGTATT..............................................2612.006.00------2.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGC....................................................1912.002.00------------------1.00--------------1.00----------------------------------------------------------------------------------------------
......ACTGTGCCACTGCACTCCAGCCTGGGGTG.......................................................................................................................................................................................................................292.000.00-2.00------------------------------------------------------------------------------------------------------------------------------
....AGACTGTGCCACTGCACTCCAGCCTGCGCG........................................................................................................................................................................................................................302.000.00-2.00------------------------------------------------------------------------------------------------------------------------------
....AGACTGTGCCACTGCACTCCAGGGC.............................................................................................................................................................................................................................252.000.00--2.00-----------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGCAGTT................................................2412.006.00----------2.00---------------------------------------------------------------------------------------------------------------------
.................................................................................................................................CTGTCTGCAGTGGATGGGAGAGGACACGGCTGGTGGGGATCGGGCTCAGCTGGGCCTTTCTGTCTCTGCAG..................................................7112.002.00--------2.00-----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGC....................................................2012.002.00--------------------------2.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGCAGAA................................................2412.006.002.00-------------------------------------------------------------------------------------------------------------------------------
......ACTGTGCCACTGCACTCCAGCCTGGGGAC.......................................................................................................................................................................................................................292.000.00-2.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGAA................................................2312.0027.00---------------------------------------------------1.00-----------------------------1.00----------------------------------------------
....................................................................................................................................TCTGCAGTGGATGGGAGAGGACA...............................................................................................2312.002.00----1.00----------------------------------1.00----------------------------------------------------------------------------------------
...............................................................................................TGGTCTAGGGGTCTGATTC........................................................................................................................................1961.332.67---------------------------------------------------------------------------------------------0.33------------------0.17--0.170.17--0.170.17-0.17-----
...............................................................................................................................................................................................TCTCTGCAGGTAGCTCG..........................................1711.001.00--------------1.00-----------------------------------------------------------------------------------------------------------------
....AGACTGTGCCACTGCACTCCAGGGG.............................................................................................................................................................................................................................251.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
................................CAACAGAGGGAGACTCCGCCC.....................................................................................................................................................................................................211.000.00--1.00-----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................CATCATTGGGGGCTGTCTGC.................................................................................................................2011.001.00----------------------------------------------------------------1.00---------------------------------------------------------------
.......CTGTGCCACTGCACTCCAGCCTGCGCG........................................................................................................................................................................................................................271.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
......ACTGTGCCACTGCACTCCAGCCGA............................................................................................................................................................................................................................241.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................AAAAAGAAACACCAGAAAAA........................................................................................................................................................................2011.001.00-----------------------------------------------------------1.00--------------------------------------------------------------------
...................................................................................................................................GTCTGCAGTGGATGGGAGAGGACACGG............................................................................................2711.001.00--------------------1.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................TCTGCAGTGGATGGGAGAGG..................................................................................................2011.001.00-----------------------------------------------------------------------------1.00--------------------------------------------------
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTGCAGTA................................................2411.006.00------------1.00-------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................CTGGTGGGGATCGGGC............................................................................1611.001.00-----------------------------------------------------------------------------------------1.00--------------------------------------
............................................................................................................................GGGGGCTGTCTGCAGAAG............................................................................................................181.000.00----------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................TCTGCAGTGGATGGGAGAGGACACGGC...........................................................................................2711.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................GAGGACACGGCTGGTGGGGAT.................................................................................2111.001.00----1.00---------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................GGGGCTGTCTGCAGTGGATG.........................................................................................................2011.001.00-----------------------------------------------------------------1.00--------------------------------------------------------------
....................................................................................................................................TCTGCAGTGGATGGGAGAGGACACGGCTTT........................................................................................301.000.00------------1.00-------------------------------------------------------------------------------------------------------------------
........................AGCCTGGGCAACAGAGGGAGACTCCGCG......................................................................................................................................................................................................281.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................TGGATGGGAGAGGACACGGA...........................................................................................201.000.00---------1.00----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................ATTGGGGGCTGTCTGCAGTGGA...........................................................................................................2211.001.00----------------------------------------------------------------------------------------1.00---------------------------------------
....................................................................................................................................TCTGCAGTGGATGGGAGAGGAC................................................................................................2211.001.00-------------1.00------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................AGTGGATGGGAGAGGTCG...............................................................................................181.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCA...................................................2011.001.00---------------------------------------------------------1.00----------------------------------------------------------------------
.........................................................................................................................................AGTGGATGGGAGAGGCGGG..............................................................................................191.000.00-----------------------------------------------1.00--------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GTGAGCTGGAGAGGGCTTT...191.000.00-------------------------------------------1.00------------------------------------------------------------------------------------
...................................................................................................................................................................GGGGATCGGGCTCAGCTGG....................................................................1911.001.00---1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................GTCTGCAGTGGATGGGAGAGGACA...............................................................................................2411.001.00------------------------------------------------------------------------------------1.00-------------------------------------------
..CGAGACTGTGCCACTCTG......................................................................................................................................................................................................................................181.000.00--------------------------------------1.00-----------------------------------------------------------------------------------------
...............................................................................................................................................TGGGAGAGGACACGGCTGGTGGGGATCGGGCTCAGCTGGGCCTTTCTGTCTCTGCAG..................................................5711.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GATGGGAGAGGACACGGCTGGTGGGG...................................................................................2611.001.00---------------------------------------------------------------------------------------1.00----------------------------------------
......ACTGTGCCACTGCACTCCAGCCTCGC..........................................................................................................................................................................................................................261.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TGCAGTGGATGGGAGAGGACACG.............................................................................................2311.001.001.00-------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................GGAGAGGACACGGCTGGTC......................................................................................191.000.00-------------------------1.00------------------------------------------------------------------------------------------------------
....AGACTGTGCCACTGCACTCCAGCGAC............................................................................................................................................................................................................................261.000.00--1.00-----------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TGCAGTGGATGGGAGAGGACACGGC...........................................................................................2511.001.00-----------------------------------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................................CAGCTGGGCCTTTCTGTCTCTGCAGGTAG..............................................2911.001.00------------------------------------------------------------------1.00-------------------------------------------------------------
....................................................................................................................................................................................GGGCCTTTCTGTCTCTGCCG..................................................201.000.00---------------------------------------------------------------------1.00----------------------------------------------------------
..............................................................................................................................................................................................................................TGGAGGGTGAGCTGGAGAGGGCA.....2331.001.00--------------------------------------------------------------------------------------------0.67-----------0.33-----------------------
.........................................................................................................................................AGTGGATGGGAGAGGACACGGCTGGTGGGGATCGGGCTCAGCTGGGCCTTTCTGTCTCTGCAG..................................................6311.001.00--------1.00-----------------------------------------------------------------------------------------------------------------------
......................................................................................................................................TGCAGTGGATGGGAGAGGACACGG............................................................................................2411.001.00-------------------------------------------------------------1.00------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGATT...............................................2411.0027.00-------------1.00------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TGGAGGGTGAGCTGGCCG..........181.000.00----------------------------------------1.00---------------------------------------------------------------------------------------
...GAGACTGTGCCACTGC.......................................................................................................................................................................................................................................1601.001.00---------------------1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................CATCATTGGGGGCTGTCTGCAGTGGATGGG.......................................................................................................3011.001.00------------------------------------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................GGGGATCGGGCTCAGTAGT....................................................................191.000.00------------------------------------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGTAA...............................................2411.0027.00--------------------------------------------------------------------------------------1.00-----------------------------------------
........................................................................................................................................CAGTGGATGGGAGAGGACACGG............................................................................................2211.001.00--------------------------------------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGAT................................................2311.0027.00----1.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCCGTA................................................2311.002.00-----------------------------------------------------------------------1.00--------------------------------------------------------
....................................................................................................................................TCTGCAGTGGATGGGAGAGGAA................................................................................................2211.001.00---------------------------------------------1.00----------------------------------------------------------------------------------
......ACTGTGCCACTGCACTCCAGCCGGCA..........................................................................................................................................................................................................................261.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................GCAGTGGATGGGAGAGGA.................................................................................................1811.001.00--------------------------------------------------------------------------1.00-----------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGGT................................................2311.001.001.00-------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TGGGCCTTTCTGTCTCTGCAGTAT...............................................2411.0027.00-----------------1.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................................TCTGCAGTGGATGGGAGAGGA.................................................................................................2111.001.00------------------------------------------------1.00-------------------------------------------------------------------------------
............................................................................................................................................................................................................................CCTGGAGGGTGAGCTGGAGA..........2030.670.67---------------------------------------0.33---------------------------------------------------0.33------------------------------------
...........................................................................................................................................................................................................................TCCTGGAGGGTGAGCTGGA............1930.670.67-------------------------------------0.33-----------------------------------------------------------------0.33------------------------
..............................................................................................................................................................................................................CGTAAGCTGGTCATC.............................1530.670.67------------------------------------------------------------------------------------------------------0.33---0.33---------------------
.............................................................................................................................................................................................................................CTGGAGGGTGAGCTGGAGAGGGC......2330.670.67----------------0.33-----------------------------------------------------------------------------------0.33---------------------------
........................................................................................................................................................................TCGGGCTCAGCTGGG...................................................................1590.560.56------------------------------------------------------------------------------------------------------------0.220.22----------------0.11-
................................................................................................................................................................................................................TAAGCTGGTCATCCTGGAGGGTG...................2320.500.50------------------------------------------------------------------------------------------------0.50-------------------------------
...............................................................................................................................................................................................................GTAAGCTGGTCATCCTGG.........................1820.500.50----------0.50---------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................CTCGTAAGCTGGTCATCCTGGAGGGTG...................2720.500.50------------------------------------0.50-------------------------------------------------------------------------------------------
...............................................................................................TGGTCTAGGGGTCTGATT.........................................................................................................................................1860.502.67---------------------------------------------------------------------------------------------0.17-----------------0.17-----------0.17----
..........................................................................................................................................................................................................................ATCCTGGAGGGTGAGCTGGA............2020.500.50-------------------------------------------------------------------------------------------------0.50------------------------------
..........................CCTGGGCAACAGAGGGAGACTCCGTCC.....................................................................................................................................................................................................2740.500.50-0.250.25-----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................TGGGGGCTGTCTGCAGTGG............................................................................................................1920.500.50---------------------------------------------------------------------------------------------------0.50----------------------------
...............................................................................................TGGTCTAGGGGTCTGAT..........................................................................................................................................1760.502.67-----------0.17---------------------------------------------------------------------------------------------------------0.170.17---------
...............................................................................................................................................................................................................................GGAGGGTGAGCTGGAGAGG........1940.500.50-------------------------0.50------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................AGGTAGCTCGTAAGCTGGTCATCCT...........................2520.500.50--------------------------------------------------------------------------------------------------0.50-----------------------------
.........................................................................................................................................................................................................................CATCCTGGAGGGTGAGCTGGAG...........2220.500.50-------------------------0.50------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................AGCTGGTCATCCTGGAGG......................1830.330.33----------0.33---------------------------------------------------------------------------------------------------------------------
...............................................................................................TGGTCTAGGGGTCTGATTA........................................................................................................................................1960.332.67-----------------------------------------0.17----------------------------------------------------------------------------------0.17---
..................................................................................................................................................................................CTGGGCCTTTCTGTCTCTG.....................................................1930.330.33-----------------0.33--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CGTAAGCTGGTCAT..............................1430.330.33--------------------------------------0.33-----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................AGGGTGAGCTGGAGAGGGCAGAGG.2430.330.33-------------------0.33------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................CTGGAGGGTGAGCTGGAGA..........1930.330.33-------------------------------------------------------------------------------------------0.33------------------------------------
.............................................................................................................................................................................................................................CTGGAGGGTGAGCTGGAGAGGG.......2230.330.33-----------------------------------------------------------------------------------------------------0.33--------------------------
..............................................................................................................................................................................................................................TGGAGGGTGAGCTGGAGAGGGCAG....2430.330.33---------------------------------------------------------------------------------------------------------0.33----------------------
...................................................................................................................................................................................................................................GGTGAGCTGGAGAGGGC......1770.290.29---0.29----------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GGGTGAGCTGGAGAGGGC......1840.250.25-----------------------------------------------------------------------------------------------------------0.25--------------------
................................................................................................................................................................................................................................GAGGGTGAGCTGGAGAGG........1850.200.20----------------------------------------0.20---------------------------------------------------------------------------------------
...............................................................................................TGGTCTAGGGGTCTGCTCC........................................................................................................................................1960.172.67------------------------------------------------------------------------------------------------------------------0.17-------------
...............................................................................................TGGTCTAGGGGTCTGCT..........................................................................................................................................1760.172.67-----------------------------------------------------------------------------------------------------------------0.17--------------
.......................................................................................................................................................................................................................................AGCTGGAGAGGGCAGAG..1770.140.14-----------------------------------------------------------------------------------------------------------------------------0.14--
...............................................................................................................................................................TGGTGGGGATCGGG.............................................................................14100.100.10-------------------------------------------------------------------------------------------------------------------------------0.10

Antisense strand
GCCGAGACTGTGCCACTGCACTCCAGCCTGGGCAACAGAGGGAGACTCCGTCCCCCTGCAAAAAAAAGAAACACCAGAAAAACCCATGTTGCAGCTGGTCTAGGGGTCTGGGTGGGGCATCATTGGGGGCTGTCTGCAGTGGATGGGAGAGGACACGGCTGGTGGGGATCGGGCTCAGCTGGGCCTTTCTGTCTCTGCAGGTAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCAGAGGA
.....................................................................................................................................((((((.((((.(((((((...((((((((.........)).))))))..)))))))))))))))))..................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001486(DRX001040)
Hela long cytoplasmic cell fraction, LNA(+). (hela)		DRR001485(DRX001039)
Hela long total cell fraction, LNA(+). (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000557(DRX000315)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR029128(GSM416757)
H520. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038857(GSM458540)
D20. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191435(GSM715545)
172genomic small RNA (size selected RNA from . (breast)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189787TAX577744(Rovira)
total RNA. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577580(Rovira)
total RNA. (breast)		SRR191562(GSM715672)
82genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040035(GSM532920)
G001T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		DRR000555(DRX000313)
THP-1 whole cell RNA, no treatment. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR040038(GSM532923)
G531N. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR037935(GSM510473)
293cand3. (cell line)		SRR191447(GSM715557)
142genomic small RNA (size selected RNA from . (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		TAX577746(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR040022(GSM532907)
G575N. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
....................................................................................................................................................................................................................................GTGAGCTGGAGAGGGGTT.... 181.000.00--------------------------------------------1.00-----------------------------------------------------------------------------------
...................................................................GAAACACCAGAAAAACGTC.................................................................................................................................................................... 191.000.00-------------------------------------------------------------------------------1.00------------------------------------------------
........TGTGCCACTGCACTCCAGCCTGGGCAACGC.................................................................................................................................................................................................................... 301.000.00--1.00-----------------------------------------------------------------------------------------------------------------------------
..........................CCTGGGCAACAGAGGGAGACTAGTG....................................................................................................................................................................................................... 251.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
........................................................TGCAAAAAAAAGAAACAGG............................................................................................................................................................................... 191.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
........................AGCCTGGGCAACAGAGGGAGACTCCGTTG..................................................................................................................................................................................................... 291.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
...........................................................AAAAAAAAGAAACACCATGAC.......................................................................................................................................................................... 211.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
............................................................AAAAAAAGAAACACCAGTTG.......................................................................................................................................................................... 201.000.00-1.00------------------------------------------------------------------------------------------------------------------------------
.......CTGTGCCACTGCACTCCAGCCTCG........................................................................................................................................................................................................................... 241.000.00--1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................TCCCCCTGCAAAAAAACGT..................................................................................................................................................................................... 191.000.00-------------------------------1.00------------------------------------------------------------------------------------------------
............................................ACTCCGTCCCCCTGCGGGT........................................................................................................................................................................................... 191.000.00-----------------------------------------------------1.00--------------------------------------------------------------------------
............................................ACTCCGTCCCCCTGCAG............................................................................................................................................................................................. 171.000.00-------------------------------1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTAGCTCGTAAGCTGGTCATCCTGGAGGG..................... 3020.500.50----------------------------------------------------------------------------------------------0.50---------------------------------
.......................................................................................................................................................................................................GGTAGCTCGTAAGCTGGTCATCCTGGAGGGT.................... 3120.500.50-----------------------------------------------------------------------------------------------0.50--------------------------------