ID: hsa-mir-6781
GENE: BECN1(10)
chr17:40975848-40976200-


(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(5)
B-CELL 		(2)
BRAIN 		(10)
BREAST 		(38)
CELL-LINE 		(3)
FIBROBLAST 		(6)
HEART 		(3)
HELA 		(3)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(36)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTTGGGTGACGGGCTCCGGGCTCCCGAGGTGAAGAGCATCGGGGGCTGAGGTGGGACCTTAGAAGGGAGTCTGGGAACCCTCACGGCTCTTATTGGAGTCCCTTCCCTGACCCTGGGCTCTAAACTGCCTTTGCTCAGGCTGTCCCGGAAGCAGGTCCTCCCCGTATCATACCATTCCTAGAGGGAACGGCGCAGGTTGGGACTTCCCTCCCTTTACCATCGTCACCAAGGCATGTGGTAACCCCGGGCCGGAGGTCAAGGGCGTCGCTTCTCCCTAATGTTGCCTCTTTTCCACGGCCTCAGGGATGGAAGGGTCTAAGACGTCCAACAACAGCACCATGCAGGTGAGCTTC
.....................................................................................................................................................................................................................................................((((((..((..(((((.((.((...........)).)))))))..)).)))))).....................................................
...............................................................................................................................................................................................................................................240............................................................303................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782TAX577453(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR189786DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189784SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAGT.................................................23119.007.00-4.00--1.00-1.001.00-2.002.00---------------------1.00----1.00------1.00----------1.00----------1.00---------------------1.00------1.00-1.00--------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAT..................................................2219.004.00-----------1.00--1.00-----------------1.002.00------------1.00----------------------------------1.00-----1.00----------1.00-------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAG..................................................2217.007.00-1.00-----2.00--1.00------------1.00-------------1.00--------------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAGA.................................................2317.007.00--4.00--1.00------------------------------------1.00---------1.00-----------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCG......................................................................................2316.006.00-----------1.00----1.00----1.00--------------1.00----------------------------1.00------------------------------------1.00---------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGT........................................................................................2116.006.00------------------------1.00--1.00-------------2.00----------------------------1.00---------1.00-------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGC.....................................................................................2416.006.00-1.00---------------2.00--------1.00-------1.00--------------------------------------1.00--------------------------------------
.....................................................................................................................................................................................................................................................................................................................................CAACAACAGCACCATGCAGGTGA.....2315.005.00--------------2.00------------------------------------------1.00----------1.00--------------------1.00----------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCA...................................................2114.004.00-1.00--1.00-------------------1.00----------------------------------------------------1.00----------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTC.......................................................................................2214.004.00---------------------2.00-----------------------------------------------1.00--------------1.00---------------------------
........................................................................................................................................................................................................................................................................................TTGCCTCTTTTCCACGGCCTCAGT.................................................2414.001.00----1.00-----------------------1.00--------------------------------------------------------1.00---------------1.00----------
................................................................................................................................................................................................................................................................................................TTTCCACGGCCTCAGAA................................................174.000.00------4.00---------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................GGTCTAAGACGTCCAACAACAGCACCATGCAGGTGA.....3613.003.003.00---------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGCA....................................................................................2513.006.00-----------------------------1.00-----1.00-------------------------------------------------------------------1.00--------
.............................TGAAGAGCATCGGGGGCTGAGGG.............................................................................................................................................................................................................................................................................................................233.000.00--3.00-------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................ATGTGGTAACCCCGGGCCGGAGG..................................................................................................2313.003.00--------3.00-------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CCAACAACAGCACCATGCAGGTGA.....2413.003.00-------1.00--------------------------------------------------------------------1.00---------------1.00-------------------
....GGTGACGGGCTCCGGGCTCCCGAGGG...................................................................................................................................................................................................................................................................................................................................262.000.00---------------------------------------2.00------------------------------------------------------------------------
.........................................................................................................................................................................TACCATTCCTAGAGGGAACG....................................................................................................................................................................2012.002.00----------------------------------------2.00-----------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCT.....................................................1912.002.001.00------------------------------1.00--------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGAAA......................................................................................2312.002.00--------------------2.00-------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................ACAACAGCACCATGCAGGTGA.....2112.002.00------------1.00-------------------------------------------------------------------------------------------1.00-------
.......GACGGGCTCCGGGCTCCCGAGG....................................................................................................................................................................................................................................................................................................................................2212.002.00---2.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGC..........................................................................................1912.002.002.00---------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCG.........................................................................................2012.002.00------------------1.00-1.00-------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................GTCCAACAACAGCACCATGCAGGTGAGCT..2912.002.00---------------2.00------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCATT.................................................2312.004.00------------------------------------------------------1.00-------------------1.00-------------------------------------
..........................................................................................................................................................................................................................................................................................................................................ACAGCACCATGCAGGTGA.....1812.002.00------------1.00------------1.00--------------------------------------------------------------------------------------
.............................TGAAGAGCATCGGGGGCTGAGGTGGGACCC......................................................................................................................................................................................................................................................................................................301.000.00---1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTTAGT.................................................2311.002.00------------------------------------------------1.00---------------------------------------------------------------
............................GTGAAGAGCATCGGGGG....................................................................................................................................................................................................................................................................................................................1711.001.00----------------------------1.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CCCGGGCCGGAGGTCAAGG............................................................................................1911.001.00----------------------------------------------------------------------------------------------1.00-----------------
............................................................................................................................................................................................................................................................................................................................TAAGACGTCCAACAACAGCACCATGCAGGTGAGC...3411.001.00---------------------------------------------------------------------------------------------------1.00------------
...................................................................................................................................................................................................................................................CCGGGCCGGAGGTCAAGGGCGTCGT.....................................................................................251.000.00---------1.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGTT....................................................................................2511.006.00----------------------1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCC......................................................1811.001.00------------------------------------------------------------------------1.00---------------------------------------
...................................................................................................................................................................................................................................................CCGGGCCGGAGGTCAAGGGCGTCGCTTT..................................................................................281.000.00-------------------------------------------------1.00--------------------------------------------------------------
...................GCTCCCGAGGTGAAGAGCATC.........................................................................................................................................................................................................................................................................................................................2111.001.00------------------1.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGCC....................................................................................2511.006.00-----------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCAA.....................................................................................2411.004.00-------------------------------------------1.00--------------------------------------------------------------------
....GGTGACGGGCTCCGGGCTCCCGAGGTGAAGA..............................................................................................................................................................................................................................................................................................................................3111.001.001.00---------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGG...........................................................................................1811.001.00-------------------------------------------------------------------------------1.00--------------------------------
....................................................................................................................................................................................................................................AGGCATGTGGTAACCCCGGG.........................................................................................................2011.001.00-------------------------------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTT.......................................................................................2211.006.00--------------------------------------1.00-------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................GATGGAAGGGTCTAAGAC...............................1811.001.00-----------------1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AGGGATGGAAGGGTCTAAGACG..............................2211.001.00------------------------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAGC.................................................2311.007.00----------------------------------------------------------1.00-----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................AACAGCACCATGCAGGTGA.....1911.001.00---------------------------------------------1.00------------------------------------------------------------------
.................................................................................................................................TTTGCTCAGGCTGTCCCGGAAGC.........................................................................................................................................................................................................2311.001.00----------------------------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................TTTTCCACGGCCTCAGGGATGGAAGGGTA.....................................291.000.00----------------------------------------------------------------------------------------------------1.00-----------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGGCA......................................................................................2311.002.00--------------------------------------1.00-------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................TTGCCTCTTTTCCACGGCCTCAG..................................................2311.001.00-------------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGAA....................................................................................2511.006.00---------------------------------------------------------------1.00------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGG............................................................................................1711.001.00--------------------------------------------------------1.00-------------------------------------------------------
....................................CATCGGGGGCTGAGGTGGGACCTTA....................................................................................................................................................................................................................................................................................................2511.001.00-----1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CCCGGGCCGGAGGTCAAGGG...........................................................................................2011.001.00-------------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGT.....................................................................................2411.006.00-----------------------------------1.00----------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................AACAACAGCACCATGCAGGTGA.....2211.001.00--------------------------------------------------1.00-------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAGTT................................................2411.007.00----1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................CCCTGGGCTCTAAACTCTG................................................................................................................................................................................................................................191.000.00---------------------------------------------------------------------------1.00------------------------------------
.......................................................................................................TCCCTGACCCTGGGCGCAC.......................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAAA.................................................2311.004.00--------------------------1.00-------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................GGGCCGGAGGTCAAGGGCGTCGCT....................................................................................2411.001.00-----------------------------------------------1.00----------------------------------------------------------------
..TGGGTGACGGGCTCCGGGCTCCCGAGGCGA.................................................................................................................................................................................................................................................................................................................................301.000.00---1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTC....................................................2011.001.00-------------------------------1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................................ACCAAGGCATGTGGTCAGG..............................................................................................................191.000.00---------------1.00------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGGCG......................................................................................2311.002.00---------1.00------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................TTGCCTCTTTTCCACGGCCTAT...................................................221.000.00----------------1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................CTTTTCCACGGCCTCAT..................................................171.000.00------------------------------------------------------------------------------------------------1.00---------------
............................................................AGAAGGGAGTCTGGGAACCCTCACGGCCCT.......................................................................................................................................................................................................................................................................301.000.00---1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGTATT..................................................................................2711.006.00-------------1.00--------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTCAGAC................................................2411.007.00--------------------------------------------------------------1.00-------------------------------------------------
........ACGGGCTCCGGGCTCCCGAGGCG..................................................................................................................................................................................................................................................................................................................................231.000.00---1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................ACCATCGTCACCAAGGC.........................................................................................................................1711.001.00-----------------------1.00----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................CTAAGACGTCCAACAACAGCACCATGCAGGTGA.....3311.001.001.00---------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CCGGGCCGGAGGTCAAGGGCGTCAT.....................................................................................251.000.00---------------------------1.00------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACGGCCTA....................................................2011.002.00-----------1.00----------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCC......................................................................................2311.004.00------------------------------------------------------------------------------1.00---------------------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCGCTT...................................................................................2611.001.00------------------------------------------------------------1.00---------------------------------------------------
...................................................................................................................................................GAAGCAGGTCCTCCCCTTCT..........................................................................................................................................................................................201.000.00----------------------------------------------------------------------------------1.00-----------------------------
..........................AGGTGAAGAGCATCGTCG.....................................................................................................................................................................................................................................................................................................................181.000.00-------------------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................TTGCCTCTTTTCCACGGCCTCC...................................................221.000.00----------------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................AGGGAACGGCGCAGGTTGGGCCA.....................................................................................................................................................231.000.00------------------------------------------------------------------------------------------1.00---------------------
....................................................................................................................................................................................................................................................CGGGCCGGAGGTCAAGGGCGTCATC....................................................................................2511.004.00----------------------1.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CCGGGCCGGAGGTCAAGGGCGTCGC.....................................................................................2511.001.00------------------------------1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................CAGCACCATGCAGGTGA.....1721.001.00------------1.00---------------------------------------------------------------------------------------------------
................................AGAGCATCGGGGGCTGAGGTGGGACCCTAG...................................................................................................................................................................................................................................................................................................301.000.00---1.00------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................CACCATGCAGGTGAGCT..1720.500.50----------------------0.50-----------------------------------------------------------------------------------------
...............................................................................................................................................................................TCCTAGAGGGAACGGC..................................................................................................................................................................1620.500.50---------------------------------------------------------------------------------------------------------0.50------
.........................................................................................................................................................................................................................................................................................TGCCTCTTTTCCACG.........................................................1530.330.33-------------------------------------------------------------------------------------------------------------0.33--
..............................................................................................................................................................................................................................................TAACCCCGGGCCG......................................................................................................1350.200.20------------------------------------------0.20---------------------------------------------------------------------

Antisense strand
CTTGGGTGACGGGCTCCGGGCTCCCGAGGTGAAGAGCATCGGGGGCTGAGGTGGGACCTTAGAAGGGAGTCTGGGAACCCTCACGGCTCTTATTGGAGTCCCTTCCCTGACCCTGGGCTCTAAACTGCCTTTGCTCAGGCTGTCCCGGAAGCAGGTCCTCCCCGTATCATACCATTCCTAGAGGGAACGGCGCAGGTTGGGACTTCCCTCCCTTTACCATCGTCACCAAGGCATGTGGTAACCCCGGGCCGGAGGTCAAGGGCGTCGCTTCTCCCTAATGTTGCCTCTTTTCCACGGCCTCAGGGATGGAAGGGTCTAAGACGTCCAACAACAGCACCATGCAGGTGAGCTTC
.....................................................................................................................................................................................................................................................((((((..((..(((((.((.((...........)).)))))))..)).)))))).....................................................
...............................................................................................................................................................................................................................................240............................................................303................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR029124(GSM416753)
HeLa. (hela)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782TAX577453(Rovira)
total RNA. (breast)		DRR000556(DRX000314)
THP-1 whole cell RNA, after 3 day treatment w. (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR189786DRR001489(DRX001043)
Hela short nuclear cell fraction, control. (hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR015358(GSM380323)
Naïve B Cell (Naive39). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR095854(SRX039177)
miRNA were isolated from FirstChoice Human Br. (brain)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189784SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
Hela short nuclear cell fraction, LNA(+). (hela)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207114(GSM721076)
IP against AGO 1 & 2, RRP40 knockdown. (ago1/2 RRP40 cell line)		SRR326281(GSM769511)
Dicer mRNA was knocked down using siDicer, cy. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR038856(GSM458539)
D11. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
THP-1 whole cell RNA, no treatment. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
...........................................................................................................................................................TCCTCCCCGTATCATACCAT.................................................................................................................................................................................. 2012.002.00----2.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................CTTTGCTCAGGCTGTCCCGGA............................................................................................................................................................................................................ 2112.002.00-----2.00----------------------------------------------------------------------------------------------------------
.............................TGAAGAGCATCGGGGGCT.................................................................................................................................................................................................................................................................................................................. 181.000.00-------------------------------------------------------------------1.00--------------------------------------------
...........................................................................................................................ACTGCCTTTGCTCAGGCTGTCCC............................................................................................................................................................................................................... 2311.001.00-------------1.00--------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................CACCATGCAGGTGAGCTTC 1911.001.00---------------------------------------------------------------------------------------------1.00------------------
..............................................................................................................................GCCTTTGCTCAGGCTGTCCCGG............................................................................................................................................................................................................. 2211.001.00--------1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................ACGTCCAACAACAGCACC............... 1811.001.00-------------------1.00--------------------------------------------------------------------------------------------
.....................................................................................GCTCTTATTGGAGTCCCT.......................................................................................................................................................................................................................................................... 1811.001.00--------------------------------------------------------------------------------------1.00-------------------------
.........................................................................................................................................................................................................ACTTCCCTCCCTTTAAAA...................................................................................................................................... 181.000.00---------------------------------------------------1.00------------------------------------------------------------
....................................................................................................................................................................................................................TTTACCATCGTCACCAAC........................................................................................................................... 181.000.00-----------------------------------------------------------------------1.00----------------------------------------
..........................................................................................................................AACTGCCTTTGCTCAGGCTGTCCC............................................................................................................................................................................................................... 2411.001.00------------------1.00---------------------------------------------------------------------------------------------
...............................................................................................................CCTGGGCTCTAAACTGCCT............................................................................................................................................................................................................................... 1911.001.00------------------------------------1.00---------------------------------------------------------------------------
...............................AAGAGCATCGGGGG.................................................................................................................................................................................................................................................................................................................... 1421.001.00----------------------------------------------------------------------------------------------------------0.500.50----
...............................................................................................................................................................................................................................................................................................................GGATGGAAGGGTCTAAGACG.............................. 2011.001.00-----------------------------------------------------1.00----------------------------------------------------------
..................................................................................................................................................GGAAGCAGGTCCTCCCGGC............................................................................................................................................................................................ 191.000.00-------------------1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................CAGGTCCTCCCCGTATCATA...................................................................................................................................................................................... 2011.001.00-----1.00----------------------------------------------------------------------------------------------------------
...............................AAGAGCATCGGGGGCAGC................................................................................................................................................................................................................................................................................................................ 181.000.00-----------------------------------------------------------------------------------1.00----------------------------
..............................................................................................................................................................................................................................................................................................................GGGATGGAAGGGTCTAAGC................................ 191.000.00-------------------------------------------------------------------------------------------1.00--------------------
................................................................................................AGTCCCTTCCCTGACCCT............................................................................................................................................................................................................................................... 1830.330.33------------------------------------------------------------------------------------------------------------0.33---
.........................................................................................................................................................................................AACGGCGCAGGTTG.......................................................................................................................................................... 1430.330.33--------------------------------------------------------------------------------------------------------------0.33-
..........................................................................................................................................................................................................................................................................................GCCTCTTTTCCACG......................................................... 1440.250.25---------------------------------------------------------------------------------------------------------------0.25