ID: rheMac3_genscan_chr2.227_1.5p
GENE: CLDND1(2)
chr2:18675254-18675603-


Display Libraries
(1)
HEART
(2)
KIDNEY
(3)
OTHER
(2)
TESTES

Sense strand
ATTTGTTGATCCCGGAAACCACAATAGCGGGATTGATCTACTTAGGACCTGTGAGTACTTTGATTTCACCAGGACAGTTGGGGGAACAAAGATAATTTTATTTGTCTCTTTTTGGACTATGTTTTTGGAATAAGATGAGTTAGTAGATTGTGCCAACTTGAAATGAGATCTCTAACAGTATCCAATGAACTCTATTCTGTTGATATTTTAGAAGGTAGATACTTGCTTACCAAATTTCAAATGATTTGAAGTTGACAGGGGCAACTACTTCATTGGATGATGAGATCTAGACCTTCAAAAGATATTATTAGTGGGCCCATTTAATAAGAGGAAATTTAGTTGGGATAACT
..................................................................................................................................................................................................................((((((((((..((((((....((((((((.....)))))))).....)))))).....(((((....))))).))))..))))))......................................................
........................................................................................................................................................................................................201................................................................................................300................................................
SizePerfect hitTotal NormPerfect NormSRR553578(SRX182784)
source: Cerebellum. (Cerebellum)
SRR553605(SRX182811)
source: Frontal Cortex. (Frontal Cortex)
SRR553577(SRX182783)
source: Frontal Cortex. (Frontal Cortex)
SRR553579(SRX182785)
source: Heart. (Heart)
SRR553606(SRX182812)
source: Kidney. (Kidney)
SRR553580(SRX182786)
source: Kidney. (Kidney)
SRR553581(SRX182787)
source: Testis. (testes)
SRR553607(SRX182813)
source: Testis. (testes)
.......................................................................................................................................TGAGTTAGTAGATTGTATAG...................................................................................................................................................................................................201340.008.00426.00282.00165.00199.00133.00108.0016.0011.00
.......................................................................................................................................TGAGTTAGTAGATTGTAT.....................................................................................................................................................................................................18310.008.00159.0029.0059.0032.0014.005.008.004.00
.......................................................................................................................................TGAGTTAGTAGATTGTATA....................................................................................................................................................................................................19128.008.0060.0016.0026.0010.007.007.002.00-
.......................................................................................................................................TGAGTTAGTAGATTGTATTT...................................................................................................................................................................................................2056.008.0032.002.008.007.005.002.00--
.......................................................................................................................................TGAGTTAGTAGATTGTATAA...................................................................................................................................................................................................2048.008.0026.001.004.003.002.0011.001.00-
.......................................................................................................................................TGAGTTAGTAGATTGTA......................................................................................................................................................................................................1734.008.0014.00-8.007.00-3.002.00-
.......................................................................................................................................TGAGTTAGTAGATTGTAGTT...................................................................................................................................................................................................2026.008.0011.002.004.003.005.00-1.00-
.......................................................................................................................................TGAGTTAGTAGATTGTGTAGT..................................................................................................................................................................................................2123.000.006.002.003.0010.00-2.00--
.......................................................................................................................................TGAGTTAGTAGATTGTATAT...................................................................................................................................................................................................2021.008.009.001.004.003.001.002.001.00-
.......................................................................................................................................TGAGTTAGTAGATTGTAAA....................................................................................................................................................................................................1919.008.003.00-2.006.002.005.00-1.00
.......................................................................................................................................TGAGTTAGTAGATTGTATT....................................................................................................................................................................................................1919.008.003.003.006.002.001.003.001.00-
......................................................................................................................................ATGAGTTAGTAGATTGTATAG...................................................................................................................................................................................................2113.000.005.004.002.001.00--1.00-
.......................................................................................................................................TGAGTTAGTAGATTGTAAAA...................................................................................................................................................................................................2012.008.005.00-1.004.00-2.00--
.......................................................................................................................................TGAGTTAGTAGATTGTAA.....................................................................................................................................................................................................1812.008.006.00-1.002.001.00-2.00-
.......................................................................................................................................TGAGTTAGTAGATTGTAGT....................................................................................................................................................................................................1911.008.007.001.002.001.00----
.......................................................................................................................................TGAGTTAGTAGATTGT.......................................................................................................................................................................................................1618.008.003.001.001.002.001.00---
........................................................................................................................................GAGTTAGTAGATTGTATAG...................................................................................................................................................................................................197.000.001.005.00-1.00----
......................................................................................................................................ATGAGTTAGTAGATTGTAT.....................................................................................................................................................................................................197.000.003.001.002.001.00----
.......................................................................................................................................TGAGTTAGTAGATTGTAAGT...................................................................................................................................................................................................205.008.001.002.00-1.00-1.00--
.......................................................................................................................................TGAGTTAGTAGATTGTAGAA...................................................................................................................................................................................................204.008.001.00--1.00-2.00--
.......................................................................................................................................TGAGTTAGTAGATTGTAG.....................................................................................................................................................................................................183.008.002.001.00------
.......................................................................................................................................TGAGTTAGTAGATTGTAGA....................................................................................................................................................................................................193.008.00----2.00--1.00
......................................................................................................................................ATGAGTTAGTAGATTGTATA....................................................................................................................................................................................................203.000.001.00-2.00-----
.......................................................................................................................................TGAGTTAGTAGATTGTAAAT...................................................................................................................................................................................................203.008.001.00---1.001.00--
.......................................................................................................................................TGAGTTAGTAGATTGTGTGGT..................................................................................................................................................................................................213.000.001.00-1.001.00----
.......................................................................................................................................TGAGTTAGTAGATTGTATTA...................................................................................................................................................................................................203.008.002.00--1.00----
........................................................................................................................................GAGTTAGTAGATTGTATA....................................................................................................................................................................................................182.000.001.00-1.00-----
.......................................................................................................................................TGAGTTAGTAGATTGTATG....................................................................................................................................................................................................192.008.00---1.001.00---
.......................................................................................................................................TGAGTTAGTAGATTGTGCTGTT.................................................................................................................................................................................................222.000.001.00-1.00-----
.......................................................................................................................................TGAGTTAGTAGATTGTTAGT...................................................................................................................................................................................................202.008.00----1.001.00--
......................................................................................................................................ATGAGTTAGTAGATTGTAGTT...................................................................................................................................................................................................212.000.001.00--1.00----
......................................................................................................................................ATGAGTTAGTAGATTGTATTT...................................................................................................................................................................................................212.000.00--2.00-----
.......................................................................................................................................TGAGTTAGTAGATTGTGTGG...................................................................................................................................................................................................202.000.001.00-1.00-----
........................................................................................................................................GAGTTAGTAGATTGTAT.....................................................................................................................................................................................................172.000.001.00-1.00-----
......................................................................................................................................ATGAGTTAGTAGATTGTAA.....................................................................................................................................................................................................192.000.001.00--1.00----
.......................................................................................................................................TGAGTTAGTAGATTGTATGA...................................................................................................................................................................................................202.008.001.00--1.00----
......................................................................................................................................ATGAGTTAGTAGATTGTATAT...................................................................................................................................................................................................212.000.00--2.00-----
........................TAGCGGGATTGATCTACTTAGGACCTATC.........................................................................................................................................................................................................................................................................................................292.000.00------1.001.00
.......................................................................................................................................TGAGTTAGTAGATTGTGTAG...................................................................................................................................................................................................201.000.00---1.00----
.......................................................................................................................................TGAGTTAGTAGATTGTGA.....................................................................................................................................................................................................181.000.001.00-------
......................................................................................................................................ATGAGTTAGTAGATTGTAGT....................................................................................................................................................................................................201.000.00--1.00-----
.......................................................................................................................................TGAGTTAGTAGATTGTATAC...................................................................................................................................................................................................201.008.00-1.00------
.........................AGCGGGATTGATCTACTTAGGACCTATC.........................................................................................................................................................................................................................................................................................................281.000.00------1.00-
.......................................................................................................................................TGAGTTAGTAGATTGTATGG...................................................................................................................................................................................................201.008.001.00-------
.......................................................................................................................................TGAGTTAGTAGATTGTATGT...................................................................................................................................................................................................201.008.00---1.00----
.......................................................................................................................................TGAGTTAGTAGATTGTGTAGA..................................................................................................................................................................................................211.000.00---1.00----
...............................ATTGATCTACTTAGGACCTA...........................................................................................................................................................................................................................................................................................................201.000.00------1.00-
.......................................................................................................................................TGAGTTAGTAGATTGTGTAT...................................................................................................................................................................................................201.000.001.00-------
......................................................................................................................................ATGAGTTAGTAGATTGTATAA...................................................................................................................................................................................................211.000.00--1.00-----
......................................................................................................................................ATGAGTTAGTAGATTGTATG....................................................................................................................................................................................................201.000.001.00-------
.......................................................................................................................................TGAGTTAGTAGATTGTAAC....................................................................................................................................................................................................191.008.001.00-------
.......................................................................................................................................TGAGTTAGTAGATTGTTAG....................................................................................................................................................................................................191.008.00-----1.00--
........................................................................................................................................GAGTTAGTAGATTGTCGAG...................................................................................................................................................................................................191.000.001.00-------
.......................................................................................................................................TGAGTTAGTAGATTGTGTGGA..................................................................................................................................................................................................211.000.001.00-------
.......................................................................................................................................TGAGTTAGTAGATTGTATCG...................................................................................................................................................................................................201.008.001.00-------
.......................................................................................................................................TGAGTTAGTAGATTGTAAGA...................................................................................................................................................................................................201.008.00--1.00-----
......................................................................................................................................ATGAGTTAGTAGATTGTA......................................................................................................................................................................................................181.000.001.00-------
.......................................................................................................................................TGAGTTAGTAGATTGTGGTTT..................................................................................................................................................................................................211.000.00----1.00---
.......................................................................................................................................TGAGTTAGTAGATTGTAATT...................................................................................................................................................................................................201.008.00----1.00---
.......................................................................................................................................TGAGTTAGTAGATTGTAAG....................................................................................................................................................................................................191.008.00---1.00----
.......................................................................................................................................TGAGTTAGTAGATTGAAT.....................................................................................................................................................................................................180.600.20-0.20--0.40---
.......................................................................................................................................TGAGTTAGTAGATTG........................................................................................................................................................................................................1550.200.20--0.20-----
.......................................................................................................................................TGAGTTAGTAGATTGATAG....................................................................................................................................................................................................190.200.200.20-------
.......................................................................................................................................TGAGTTAGTAGATTGCA......................................................................................................................................................................................................170.200.20---0.20----
.......................................................................................................................................TGAGTTAGTAGATTGAATA....................................................................................................................................................................................................190.200.20----0.20---
.......................................................................................................................................TGAGTTAGTAGATTGAATT....................................................................................................................................................................................................190.200.20----0.20---

Antisense strand
ATTTGTTGATCCCGGAAACCACAATAGCGGGATTGATCTACTTAGGACCTGTGAGTACTTTGATTTCACCAGGACAGTTGGGGGAACAAAGATAATTTTATTTGTCTCTTTTTGGACTATGTTTTTGGAATAAGATGAGTTAGTAGATTGTGCCAACTTGAAATGAGATCTCTAACAGTATCCAATGAACTCTATTCTGTTGATATTTTAGAAGGTAGATACTTGCTTACCAAATTTCAAATGATTTGAAGTTGACAGGGGCAACTACTTCATTGGATGATGAGATCTAGACCTTCAAAAGATATTATTAGTGGGCCCATTTAATAAGAGGAAATTTAGTTGGGATAACT
..................................................................................................................................................................................................................((((((((((..((((((....((((((((.....)))))))).....)))))).....(((((....))))).))))..))))))......................................................
........................................................................................................................................................................................................201................................................................................................300................................................
SizePerfect hitTotal NormPerfect NormSRR553578(SRX182784)
source: Cerebellum. (Cerebellum)
SRR553605(SRX182811)
source: Frontal Cortex. (Frontal Cortex)
SRR553577(SRX182783)
source: Frontal Cortex. (Frontal Cortex)
SRR553579(SRX182785)
source: Heart. (Heart)
SRR553606(SRX182812)
source: Kidney. (Kidney)
SRR553580(SRX182786)
source: Kidney. (Kidney)
SRR553581(SRX182787)
source: Testis. (testes)
SRR553607(SRX182813)
source: Testis. (testes)