ID: uc009rps.16
GENE: Usp19(16)
chr9:108400027-108400276+


(1)
AGO.mut 		(11)
AGO2.ip 		(1)
AGO3.ip 		(18)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(8)
EMBRYO 		(6)
ESC 		(4)
FIBROBLAST 		(4)
LIVER 		(1)
LYMPH 		(12)
OTHER 		(2)
OTHER.mut 		(1)
OVARY 		(1)
PIWI.ip 		(2)
SKIN 		(1)
SPLEEN 		(7)
TESTES 		(1)
THYMUS

Sense strand
GTTGATGCCTGCTCAGGCTTTGTCTCAGGTTCTCTAAAGTGCTTTCTGCCCCAGGGCAAGCATATTCCTCTTTTAGTCCACATATCATGTCCTGCCCCATCTCAGTAGACTCCAGTGCAGGACTAAGCCCTCCGTGGTGCCGTGAAGCAGAGCTGGAGAAAGGTCGCACCACATGCCATATGTGTGTCCTTTCTCCCCAGGTAATTAAGAACCGTTTCCACCGTGTTTTCTTGCCCTCCCACTCACTGGA
..........................................................................................................................................................(((((((((.(((((............))))).)))))))))......................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR073955(GSM629281)
total RNA. (blood)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR037898(GSM510434)
ovary_rep3. (ovary)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR206942(GSM723283)
other. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206941(GSM723282)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGT.................................................21114.001.00---2.00--2.00--3.00-2.00----------------1.002.00------------------------1.00-1.00------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACAT............................................................................2319.009.00-6.00-----1.00-------------------1.00----------1.00------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACAT............................................................................2117.007.00---------------1.00------1.00---2.00--------1.00------------------------------1.001.00-
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGCC.........................................................................2617.007.007.00--------------------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGC..........................................................................2315.005.00----------------------------------------1.001.00----1.00-----1.00--1.00-------------
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGT..........................1814.004.00--1.001.002.00----------------------------------------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACA.............................................................................2214.004.00------------------2.00--------------1.00--1.00--------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCAC..............................................................................2113.003.00------------------------1.00-------------------1.00--------1.00---------------
..............................................................................................................................................................AAAGGTCGCACCACATGCCATATGTGTGTCC.............................................................3113.003.00----------3.00----------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCAC..............................................................................1913.003.00-----------1.00-----------1.00----------1.00----------------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGA.................................................2112.001.00--------------1.00-------------1.00----------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGCC.........................................................................2412.002.00------1.00-----------------------------------1.00--------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGT..........................................................................2312.002.00--------1.00-------------1.00----------------------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGC..........................................................................2512.002.00---------------1.00----1.00------------------------------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGTAT...............................................2312.001.00-------1.00---------------------------------------1.00---------------------
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGTGT........................2012.002.00--1.001.00-----------------------------------------------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATG...........................................................................2212.002.00-----1.00-------------------------------------------------------1.00-------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACA.............................................................................2012.002.00--------------------------------1.00----------1.00-------------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATGA..........................................................................2311.002.00-----1.00---------------------------------------------------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCCCCT...................................................211.000.00-----------------1.00---------------------------------------------------
.....................................................................................................................................................GAGCTGGAGAAAGGTGGTA..................................................................................191.000.00-------------------------------1.00-------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACCT............................................................................221.000.00----------------------------------------------------------1.00----------
.................................................................................................................................................................................ATATGTGTGTCCTTTCTCCCCATT.................................................241.000.00--------1.00------------------------------------------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAG..................................................2011.001.00----1.00----------------------------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACATGCC.........................................................................2511.001.00-----1.00---------------------------------------------------------------
................................................................................................................................................AAGCAGAGCTGGAGAAAGGTCGCACC................................................................................2611.001.00--------------------------------------------------------------------1.00
...................................................................................................................................................CAGAGCTGGAGAAAGGTCG....................................................................................1911.001.00--------------------------------------------------1.00------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGTAG...............................................2311.001.00------------1.00--------------------------------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGA..........................................................................2511.001.00---------------------------1.00-----------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCTGA................................................................................181.000.00-------------1.00-------------------------------------------------------
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATG...........................................................................2411.001.00--------------------1.00------------------------------------------------
..................................................................................................................GTGCAGGACTAAGCCCTCCGTGGTGCCGTGAAGCAGAGCTGGAGAAAGGTCGCACCACATGCCATATGTGTGTCCTTTCTCCCCAG..................................................8611.001.00-----------------------------------------------------------------1.00---
......................................................................................................................................................AGCTGGAGAAAGGTCGCACCACA.............................................................................2311.001.00-------------------------------------------------1.00-------------------
...........................................................................................................................................................................................................ATTAAGAACCGTTTCCACCGTG.........................2211.001.00------------------------------------------------1.00--------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCCCCAGT.................................................231.000.00-----1.00---------------------------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACA.............................................................................2111.001.00------------1.00--------------------------------------------------------
....................................................................................................................................................................................TGTGTGTCCTTTCTCCCCAGTAA...............................................2311.001.00-----------------------------------------------------------1.00---------
.................................................................................................................................................AGCAGAGCTGGAGAACGG.......................................................................................181.000.00---------------------1.00-----------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACATGAT.........................................................................2511.001.00---------------------------------------------1.00-----------------------
.........................................................................................................................................................TGGAGAAAGGTCGCACCACATTTT.........................................................................2411.007.00--------------------------------------------------------------1.00------
.........................................................................................................................................................TGGAGAAAGGTCGCAGT................................................................................171.000.00-----------------1.00---------------------------------------------------
.....................................................................................................................................................................................GTGTGTCCTTTCTCCCCAGAAA...............................................221.000.00--------------1.00------------------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACAT............................................................................2211.001.00----------------1.00----------------------------------------------------
..........................................................................................................................................................................................................AATTAAGAACCGTTTCCACCGT..........................2211.001.00----1.00----------------------------------------------------------------
...................................................................................................................................................................................ATGTGTGTCCTTTCTCCCCAGTT................................................2311.001.00------------1.00--------------------------------------------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCCCCA...................................................2111.001.00-----------------------1.00---------------------------------------------
..................................................................................................................................................................................TATGTGTGTCCTTTCTCC......................................................1811.001.00----------------------------------------------------------------1.00----
...................................................................................................................................................................................ATGTGTGTCCTTTCTCCCCAG..................................................2111.001.00-------1.00-------------------------------------------------------------
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGTGTTTT.....................2311.001.00--1.00------------------------------------------------------------------
..............................................................................................................................................................................................................AAGAACCGTTTCCACCGTGTTTTCTT..................2611.001.00--1.00------------------------------------------------------------------
...................................................................................................................................................................................ATGTGTGTCCTTTCTCCCCAGC.................................................2211.001.00---------------------------------------------------------------1.00-----
.......................................................................................................................................................GCTGGAGAAAGGTCGCACCACATGCCA........................................................................2711.001.00------1.00--------------------------------------------------------------
........................................................................................................................................................CTGGAGAAAGGTCGCACCACATG...........................................................................2311.001.00--------1.00------------------------------------------------------------
.................................................................................................................................................................................ATATGTGTGTCCTTTCTCCCTT...................................................221.000.00----------------1.00----------------------------------------------------
..........................................................................................................AGACTCCAGTGCAGGACT..............................................................................................................................1820.500.50------------------------------0.50--------------------------------------

Antisense strand
GTTGATGCCTGCTCAGGCTTTGTCTCAGGTTCTCTAAAGTGCTTTCTGCCCCAGGGCAAGCATATTCCTCTTTTAGTCCACATATCATGTCCTGCCCCATCTCAGTAGACTCCAGTGCAGGACTAAGCCCTCCGTGGTGCCGTGAAGCAGAGCTGGAGAAAGGTCGCACCACATGCCATATGTGTGTCCTTTCTCCCCAGGTAATTAAGAACCGTTTCCACCGTGTTTTCTTGCCCTCCCACTCACTGGA
..........................................................................................................................................................(((((((((.(((((............))))).)))))))))......................................................
..................................................................................................................................................147..................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR073955(GSM629281)
total RNA. (blood)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT2()
Testes Data. (testes)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR037898(GSM510434)
ovary_rep3. (ovary)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR206942(GSM723283)
other. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206941(GSM723282)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.......................................................................................TGTCCTGCCCCATCTCAGT................................................................................................................................................ 1912.002.00-------------------2.00-------------------------------------------------
..................................................................CCTCTTTTAGTCCACATATCATGTCC.............................................................................................................................................................. 2612.002.00-------------------------2.00-------------------------------------------
................................................................................................................................................................................................................................GTTTTCTTGCCCTCCCAA........ 181.000.00---------------------------------------------------1.00-----------------
..................................................................................................................................................................................TATGTGTGTCCTTTCATGA..................................................... 191.000.00-------------1.00-------------------------------------------------------
........................................................................................GTCCTGCCCCATCTCAGTTT.............................................................................................................................................. 201.000.00-------------------------------------1.00-------------------------------
................................................................................................CCATCTCAGTAGACTCCTCG...................................................................................................................................... 201.000.00------------------------1.00--------------------------------------------
.........................CAGGTTCTCTAAAGTGCGC.............................................................................................................................................................................................................. 191.000.00------------------------------1.00--------------------------------------
........................................................................................................................................................................................TGTCCTTTCTCCCCAGTAA............................................... 191.000.00---------------------------------------------------------1.00-----------
.........................................................................TAGTCCACATATCATTATA.............................................................................................................................................................. 191.000.00------------------------------------------------------------1.00--------
...........................................................................................................................................................................................CCTTTCTCCCCAGGTAG.............................................. 171.000.00---------------------1.00-----------------------------------------------
.......................................................................TTTAGTCCACATATCGT.................................................................................................................................................................. 171.000.00---------------------------------------1.00-----------------------------