ID: uc008ybl.0
GENE: (1)
chr5:91320357-91320545+


(1)
AGO.mut 		(4)
AGO2.ip 		(2)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(5)
EMBRYO 		(7)
FIBROBLAST 		(1)
KIDNEY 		(14)
LIVER 		(11)
OTHER 		(9)
OTHER.mut 		(1)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(1)
SPLEEN 		(16)
TESTES 		(1)
UTERUS

Sense strand
GCTTCTCTGTGCAGCGCTGCTGCTGCTGGCCACCAGCCGCCTGGCCACAGGTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAGGGGCGCCTATCGCCAATGAGCTGCGCTGTCAGTGCCTGCAGACCATGGCT
.........................................................................(((((((((...(((((((.((((..((........))..)))).)))).))))))))))))......................................................
.......................................................................72.................................................................139................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT1()
Liver Data. (liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverWT3()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesWT4()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR038744(GSM527279)
small RNA-Seq. (brain)
............................................................................AGGAGGGACCTCTGGTGAGCG............................................................................................211179.00179.0077.0032.0017.003.004.004.0011.003.004.002.0010.00-----4.002.001.00-------1.00-1.00---------1.00-------1.00-----1.00--------
............................................................................AGGAGGGACCTCTGGTGAGCGA...........................................................................................22197.00179.0046.00-3.0012.006.00-4.002.008.005.00-1.00--1.002.00-1.00---2.00------1.00--1.00----1.00----------1.00-------------
...........................................................................GAGGAGGGACCTCTGGTGAGCG............................................................................................22168.0068.0049.0011.00-2.001.00--1.00-1.00-----1.00-----------------------1.00-1.00-------------------
............................................................................AGGAGGGACCTCTGGTGAGCGT...........................................................................................22152.00179.0010.00-12.003.003.008.003.004.00-1.00----------1.00---1.002.001.00--1.00-------------1.00--------------1.00--
............................................................................AGGAGGGACCTCTGGTGAGC.............................................................................................20129.0029.00--6.002.006.00--8.00-1.00----------1.00--1.00---1.00-1.00---1.00--------------------1.00------
............................................................................AGGAGGGACCTCTGGTGAGCGAAT.........................................................................................2416.00179.00-----6.00-------------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGT...........................................................................................2316.0068.00----2.003.00---1.00---------------------------------------------------
......................................................................TGGGGGAGGAGGGACCTCTGGTGAGCG............................................................................................2714.004.00-4.00-----------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAA..........................................................................................2313.00179.00-----------------------2.00-----------------------------------1.00-
.............................................................................GGAGGGACCTCTGGTGAGCG............................................................................................2013.003.00---1.00--------2.00------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGAAA.........................................................................................2513.0068.00--------3.00----------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGATT.........................................................................................2513.0068.00------2.00----------1.00-------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAAA.........................................................................................2413.00179.00---2.00-----------1.00---------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAGCGT...........................................................................................2112.003.00------------2.00------------------------------------------------
..................................................GTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAG..................................................8912.002.00----------------------2.00--------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAT..........................................................................................2312.00179.00------------------1.00-----1.00------------------------------------
..........................................................................................................................................................ATGAGCTGCGCTGTCAGTGCC..............2112.002.00------------------2.00------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAGCGA...........................................................................................2112.003.00------------2.00------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGCAC.........................................................................................242.000.00-------------------2.00-----------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGC.............................................................................................2112.002.00----1.00----------1.00---------------------------------------------
..TTCTCTGTGCAGCGCTGCTGCTGCTGGCC..............................................................................................................................................................2911.001.00------------------------------1.00------------------------------
............................................................................AGGAGGGACCTCTGGTGAGAG............................................................................................2111.001.001.00------------------------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAGC.............................................................................................1911.001.00------------1.00------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAG..............................................................................................1911.001.00----------------------------------1.00--------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGAAGA........................................................................................2611.0068.00---------1.00---------------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAG..............................................................................................1811.001.00------------1.00------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGC...........................................................................................2211.001.00-------1.00-----------------------------------------------------
..........................................................CGCCACTGCCACTGGGGGA................................................................................................................1911.001.00----------------------------------------1.00--------------------
............................................................................AGGAGGGACCTCTGGTGAGCGTT..........................................................................................2311.00179.00---1.00---------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGG...........................................................................................2211.00179.001.00------------------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGTG............................................................................................221.000.001.00------------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAGA.........................................................................................2411.00179.00---------1.00---------------------------------------------------
.......................................................................................................................................................CCAATGAGCTGCGCTGTC....................1811.001.00-------------------1.00-----------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGA...........................................................................................2311.0068.00------------------------------------------------1.00------------
............................................................................AGGAGGGACCTCTGGTGGGCG............................................................................................211.000.00--1.00----------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGTGA.........................................................................................2411.00179.00---1.00---------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGAGA...........................................................................................2211.001.001.00------------------------------------------------------------
..................................................GTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAGA.................................................9011.002.00----------------------1.00--------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCAT...........................................................................................2211.0029.00-----------1.00-------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGTAAA........................................................................................2511.00179.00-------------------------------1.00-----------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAG..........................................................................................2311.00179.00----1.00--------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAAGT........................................................................................2511.00179.00----1.00--------------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGAAT.........................................................................................2511.0068.00---------------------1.00---------------------------------------
....................................................................................................................TGACCAAGAGTCTTCTCCCATTT..................................................231.000.00--------------------------------1.00----------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGATAA........................................................................................2511.00179.00--------------------------------------------------------1.00----

Antisense strand
GCTTCTCTGTGCAGCGCTGCTGCTGCTGGCCACCAGCCGCCTGGCCACAGGTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAGGGGCGCCTATCGCCAATGAGCTGCGCTGTCAGTGCCTGCAGACCATGGCT
.........................................................................(((((((((...(((((((.((((..((........))..)))).)))).))))))))))))......................................................
.......................................................................72.................................................................139................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT1()
Liver Data. (liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverWT3()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesWT4()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR038744(GSM527279)
small RNA-Seq. (brain)
..............................................................................................................................................................GCTGCGCTGTCAGTGCCTGCAGACCA..... 2617.007.00-----------3.00-3.001.00----------------------------------------------
................................................................................................................CCGCTGACCAAGAGTCTTCTCCCA..................................................... 2413.003.00-----------2.00--1.00----------------------------------------------
..............................................................................................................TCCCGCTGACCAAGAGTCTTCTCCCA..................................................... 2612.002.00-----------2.00-------------------------------------------------
......................................................................................................TCCCACAGTCCCGCTA....................................................................... 162.000.00-------------2.00-----------------------------------------------
..........................................................................................................ACAGTCCCGCTGACCAAGAGTCTTC.......................................................... 2512.002.00--------------1.00----------------------1.00-----------------------
................................CCAGCCGCCTGGCCACAGGTCG....................................................................................................................................... 221.000.00-------------------1.00-----------------------------------------
...................................................................................................GCCTCCCACAGTCCCGCTGACCAAGA................................................................ 2611.001.00--------------1.00----------------------------------------------
.....................................................................................................CTCCCACAGTCCCGCTGACCAATA................................................................ 241.000.00-----------1.00-------------------------------------------------
.....................................CGCCTGGCCACAGGTAGG...................................................................................................................................... 1811.001.00---------------------------------------------------1.00---------
.........................................................TCGCCACTGCCACTGGGG.................................................................................................................. 1811.001.00---------------------------1.00---------------------------------
...........................................GCCACAGGTAGGTCTCGCCACTGCCA........................................................................................................................ 2611.001.00-------------1.00-----------------------------------------------
...................................................................................................GCCTCCCACAGTCCCGCTGACCAA.................................................................. 2411.001.00-------------------------------------------------------1.00-----
...........................GGCCACCAGCCGCCTCGG................................................................................................................................................ 181.000.00------------------------------------------1.00------------------
........................................................................GGGGAGGAGGGACCTCTGGTGAGCGCA.......................................................................................... 2711.001.00------------------------------1.00------------------------------
.........................................................................................................CACAGTCCCGCTGACCAAGAGTCTT........................................................... 2511.001.00-----------------------------------1.00-------------------------
...............................................CAGGTAGGTCTCGCCACT............................................................................................................................ 1811.001.00--------------------1.00----------------------------------------
..............CGCTGCTGCTGCTGGCCACCAGCCG...................................................................................................................................................... 2511.001.00---------------------------------------------------------1.00---
................................CCAGCCGCCTGGCCACAGGTAG....................................................................................................................................... 2211.001.00--------------------------------------------------1.00----------
....................................................................................................CCTCCCACAGTCCCGCTGACCAA.................................................................. 2311.001.00-------------1.00-----------------------------------------------
.............................................................................................................GTCCCGCTGACCAAGAGTCTTCTCCCA..................................................... 2711.001.00---------------------------------------------1.00---------------
...............................................................................................................................................................CTGCGCTGTCAGTGCCTGCAGACCA..... 2511.001.00-------------------------------------------------1.00-----------
...........................................GCCACAGGTAGGTCTCGCCA.............................................................................................................................. 2011.001.00--------------------------------------------1.00----------------
................................................................................................................CCGCTGACCAAGAGTCTTCTCCCATA................................................... 2611.001.00--------------1.00----------------------------------------------
......................................GCCTGGCCACAGGTAGGT..................................................................................................................................... 1820.500.50------------------------0.50------------------------------------
..................GCTGCTGCTGGCCACCA.......................................................................................................................................................... 1780.120.12------------------------------------------------------------0.12