ID: uc008pvu.3
GENE: Arhgef2(4)
chr3:88435851-88436247+


(1)
AGO.mut 		(17)
AGO2.ip 		(5)
B-CELL 		(35)
BRAIN 		(5)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(5)
ESC 		(4)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(5)
LIVER 		(12)
OTHER 		(4)
OTHER.mut 		(1)
PIWI.ip 		(1)
PIWI.mut 		(5)
SPLEEN 		(10)
TESTES 		(2)
THYMUS 		(1)
UTERUS

Sense strand
ACAACCGCTGTAAAGACACCCTGGCCAACTGTACCAAGGTCAAGCAGAAGGTGAGCTAGATGGCAGGGTGGGCAGAGGGCTTGCGGGGAGGGCATCGCCATCCCTGCGGGCCTTTCCACACATCCCTCACCCTCTGTCCCTCTCCTTGCCGTGGGGCATCCCAGACCCTCGGCCTGTGTAAACACAGCCCTGCCACACTAGTTTACCTATATCCCGATGTCCTTAACTGCGGGGTCAACTTTCTCCCAAGAGGGCGGATGCCAGGATCTGGCTTGTTCTGGGTGTGTGGCAGGGCAGTCTTTGGGTGACAGCTGTTTGTGGTGTCTCTCTTCTGCTCTGTGTCACAGCAACAGAAAGCTGCACTGCTGAGGAACAACACTGCTTTGCAGTCTGTCTC
..........................................................................................................................................................................................................................................................................................((((..(((((((((.....(((.((((.((......)))))).)))..)))))))))..))))...................................................
.......................................................................................................................................................................................................................................................................................280................................................................347................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR073954(GSM629280)
total RNA. (blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR206942(GSM723283)
other. (brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR038744(GSM527279)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553584(SRX182790)
source: Heart. (Heart)		mjLiverWT3()
Liver Data. (liver)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACAG..................................................22155.0055.0010.005.001.002.00-8.001.00-1.00--1.002.00--1.00-------2.00--1.001.001.00----2.00-1.00-1.00------1.00-2.00-------2.00------1.001.00-----1.00---------1.00-1.00-1.00-1.00---1.001.00-----------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACAGT.................................................23154.0055.002.00-5.00-4.001.004.00-7.00-1.00--1.00--4.00------1.00-1.001.001.002.00---1.001.001.001.001.002.00-1.00-1.001.001.00----1.00--1.00-----2.001.00----------1.00-----------1.00--------------1.00----
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACAGA.................................................23116.0055.00-10.00---1.001.001.00-----3.00---------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCAC....................................................20114.0014.001.00--2.00-------3.00-------1.00--3.00--1.001.00--------------1.00-----------------------1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACA...................................................2117.007.001.00-1.001.00---1.00-----------1.00--1.00-----1.00------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CTCTCTTCTGCTCTGTGTCACAGT.................................................2417.004.00--1.00--------1.00---1.00----1.00-------------1.00----1.00-----------------------1.00-------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCA.....................................................1916.006.00--1.003.00---------------------------------------1.00--------------------------------1.00------------------------
...........AAAGACACCCTGGCCAACTGT.............................................................................................................................................................................................................................................................................................................................................................................2116.006.00---------5.00----------1.00--------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................TGTCTCTCTTCTGCTCTGTGT.......................................................2116.006.00---1.00---------------1.00----1.00--1.00---------------------2.00---------------------------------------------------
........................CCAACTGTACCAAGGTCAAGCAG..............................................................................................................................................................................................................................................................................................................................................................2315.005.00--------------5.00--------------------------------------------------------------------------------------
...........AAAGACACCCTGGCCAACT...............................................................................................................................................................................................................................................................................................................................................................................1915.005.00-------2.00--2.00-------------------------1.00----------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACAGGA................................................2415.0055.00----5.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACAGC.................................................2315.005.001.00---------1.00----------2.00----1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTGTCACA...................................................2314.004.00--3.00------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTGTCA.....................................................2114.004.00--1.00----------------1.00-------1.00-------------------------------1.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................................................CTCTCTTCTGCTCTGTGTCACAG..................................................2314.004.001.00-----------1.00-------------------------------------------------------------1.00----------------------1.00---
.................................................................................................................................................................................................................................................................................................................................TGTCTCTCTTCTGCTCTGTGTC......................................................2213.003.00---1.00-----------1.00------------------1.00------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CTCTTCTGCTCTGTGTCACAGA.................................................223.000.00----3.00------------------------------------------------------------------------------------------------
.................................CCAAGGTCAAGCAGAAG...........................................................................................................................................................................................................................................................................................................................................................1713.003.00------------------2.00-------------1.00--------------------------------------------------------------------
.........................CAACTGTACCAAGGTCAAGCAG..............................................................................................................................................................................................................................................................................................................................................................2213.003.00------------------------------3.00----------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTGTCAC....................................................2212.002.00-----1.001.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CTCTCTTCTGCTCTGTGTCA.....................................................2012.002.00-----------1.00-------------1.00---------------------------------------------------------------------------
...........AAAGACACCCTGGCCAAC................................................................................................................................................................................................................................................................................................................................................................................1812.002.00-------1.00----------------------------1.00----------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................TGTCTCTCTTCTGCTCTGTGTCA.....................................................2312.002.001.00-------------------------------1.00--------------------------------------------------------------------
.........GTAAAGACACCCTGGCCAACTGT.............................................................................................................................................................................................................................................................................................................................................................................2312.002.00-------1.00--1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTC......................................................1812.002.00--------------------------------------------1.00-------------1.00------------------------------------------
............................................................................................................................................................................................................................................................................................TGTGGCAGGGCAGTCTTTGGG............................................................................................2112.002.00------------------------2.00----------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTGTC......................................................2012.002.00---1.00-------------------------------------------------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACTGT.................................................2312.0014.00---------------1.00-------------------------------------------------------1.00-----------------------------
.......................................................................................................................................................................................................................................................................................................................................TCTTCTGCTCTGTGTCACAGT.................................................212.000.00-----------1.00------------1.00----------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CTCTCTTCTGCTCTGTGTCACA...................................................2212.002.00---1.00---------------------1.00---------------------------------------------------------------------------
.....CGCTGTAAAGACACCCTGGCCAACT...............................................................................................................................................................................................................................................................................................................................................................................2512.002.00---------------------------------------------2.00-------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................GCTGCACTGCTGAGGAACAACAC..................2312.002.00----------------------------------------2.00------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CTCTCTTCTGCTCTGTGTCAC....................................................2112.002.001.00-1.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................TGTGGCAGGGCAGTCTTTGGGT...........................................................................................2212.002.00-----------------------------------------------2.00-----------------------------------------------------
..............................................................................................................................................................................................................................................................CGGATGCCAGGATC.................................................................................................................................1441.501.50------------------1.50----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACATTT................................................2411.007.00---------------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................TGCACTGCTGAGGAACAACACTGCT..............2511.001.00------------------------------------------1.00----------------------------------------------------------
...........AAAGACACCCTGGCCAACTG..............................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------1.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTGTCACAGT.................................................2511.001.00------1.00----------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................TGTGGCAGGGCAGTCTTTGGGTGACA.......................................................................................2611.001.00----------------------------------------------------------------------1.00------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACAGCT................................................2411.005.00------------1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................TGTGTGGCAGGGCAGTCTTTGGTTAA.........................................................................................2611.001.00------------------------------------------------------------------------------------------1.00----------
......................................................................................................................................................................................................................................................................................................................................................................................AACACTGCTTTGCAGTCTGT...2011.001.00----------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTGTCACAG..................................................2411.001.00--------------------------------------------------1.00--------------------------------------------------
..............GACACCCTGGCCAACTGTACCAAGGTCAAGCA...............................................................................................................................................................................................................................................................................................................................................................3211.001.00----------------------------------------------------1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................CAGAAAGCTGCACTGCTGAGGAACAA.....................2611.001.00-----------------------------------------------------------------------------------1.00-----------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACACT.................................................2311.007.00---------------------1.00-------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CTCTTCTGCTCTGTGTCACA...................................................2011.001.00--------------------------------------------------------------------------------------1.00--------------
.....CGCTGTAAAGACACCC........................................................................................................................................................................................................................................................................................................................................................................................1611.001.00-------------------------------------------------------------------------------1.00---------------------
..................................................................................................................................................................................................................................................................................................................................GTCTCTCTTCTGCTCTGTGTCACAGC.................................................2611.001.00-------------1.00---------------------------------------------------------------------------------------
..........................................................................GAGGGCTTGCGGGGAGGGC................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................TTGTGGTGTCTCTCTTCT................................................................1821.001.00-------1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCACAGAT................................................2411.0055.00--------------------1.00--------------------------------------------------------------------------------
.............................................................GGCAGGGTGGGCAGAGGGCTTGCGGG......................................................................................................................................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------------------------------1.00-------
.......................................................................GCAGAGGGCTTGCGGGGAGGG.................................................................................................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------------1.00--
.............................................................................................................................................................................................................................................................................................................................................................ACAGAAAGCTGCACTGCTGAGGAACA......................2611.001.00-------------------------------------------------------------------1.00---------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................GAGGAACAACACTGCTTTGCAGT.......2311.001.00---------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................CTCTCTTCTGCTCTGTGTCCC....................................................211.000.00------------------------------------------------------------------------1.00----------------------------
........TGTAAAGACACCCTGGCCAAC................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------1.00---------------------------------------------------------------------------------------------
....................................................................................................TCCCTGCGGGCCTTTTTTT......................................................................................................................................................................................................................................................................................191.000.00--------------------------------------1.00--------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................CTTCTGCTCTGTGTCACAGT.................................................201.000.00---1.00-------------------------------------------------------------------------------------------------
.........................CAACTGTACCAAGGTCAAGCA...............................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------1.00---------------------------
..................................CAAGGTCAAGCAGAAGGTGA.......................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------1.00--------------------------------------------------------------------------------
........................................................................CAGAGGGCTTGCGGGGAGGGC................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------1.00---------------
.............................................................................................................................................................................................................................................................................................................................................................ACAGAAAGCTGCACTGCTGAGGAACAAC....................2811.001.00----------------------------------------------------1.00------------------------------------------------
.....................TGGCCAACTGTACCAAGGTCAAGCAGAAG...........................................................................................................................................................................................................................................................................................................................................................2911.001.00------------------1.00----------------------------------------------------------------------------------
..AACCGCTGTAAAGACTA..........................................................................................................................................................................................................................................................................................................................................................................................171.000.00-----------------1.00-----------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................TTCTGCTCTGTGTCACAGT.................................................191.000.00-----------------------------------------------------1.00-----------------------------------------------
............................................................................................................................................................................................................................................................................................TGTGGCAGGGCAGTCTTTGG.............................................................................................2011.001.00------1.00----------------------------------------------------------------------------------------------
..........TAAAGACACCCTGGCCAACTGT.............................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------------------1.00---------------------------------------------
.................................................................................................................................................................................................................................................................................................................................TGTCTCTCTTCTGCTCTGTGTT......................................................2211.006.00------------1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................ACAGAAAGCTGCACTGCTGAGGAAC.......................2511.001.00-----------------------------------------------------------------------------------------------1.00-----
............................................................................................................................................................................................................................................................................................TGTGGCAGGGCAGTCTTTGGA............................................................................................2111.001.00------------1.00----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................CTCTTCTGCTCTGTGTCACAGT.................................................221.000.00--1.00--------------------------------------------------------------------------------------------------
.........GTAAAGACACCCTGGCCAACTGTACT..........................................................................................................................................................................................................................................................................................................................................................................261.000.00---------------------------------------------------------------------------------------1.00-------------
..........................................................................................................................................................................................................................................................................................TGTGTGGCAGGGCAGTCTTTGG.............................................................................................2211.001.00----------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................TCTCTTCTGCTCTGTGTCAT....................................................2011.006.00---1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTGTCACAGA.................................................2511.001.00---------------------------------------------------------------------------1.00-------------------------
..........................................................................................................................................................................................................................................................................TCTGGCTTGTTCTGGGGCT................................................................................................................191.000.00-----------------------1.00-----------------------------------------------------------------------------
..................................................GTGAGCTAGATGGCAGGGTGGGCAGA.................................................................................................................................................................................................................................................................................................................................2611.001.00------------------------------------------------1.00----------------------------------------------------
...ACCGCTGTAAAGACACCCTGGCCAACTG..............................................................................................................................................................................................................................................................................................................................................................................2811.001.00------------------------------------------------------------1.00----------------------------------------
...........................................................................................................................................................................................................................................................................................GTGTGGCAGGGCAGTCTTTGGGT...........................................................................................2311.001.00-----------------------------------1.00-----------------------------------------------------------------
...............................................................................................................................................................................GTGTAAACACAGCCCTGCCACACT......................................................................................................................................................................................................2411.001.00----------1.00------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................GTGGCAGGGCAGTCTTTGGGTGA.........................................................................................2311.001.00---------------------------------------------------1.00-------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................AGAAAGCTGCACTGCTGAGGAAC.......................2311.001.00-------------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................TCTCTCTTCTGCTCTGTTCT......................................................201.000.00----------------------------------------------------------------------------------------------1.00------
...........................................................................................................................................................................................................................................................GGGCGGATGCCAGGATCTGGCT............................................................................................................................2211.001.00---------------------------------------------------------------------------------------------------1.00-
.....................................................................................................................................................................................................................................................................CAGGATCTGGCTTGTTCTGGGTGTGTGGCAGGGCAGTCTTTGGGTGACAGCTGTTTGTGGTGTCTCTCTTCTGCTCTGTGTCACAG..................................................8611.001.00--------------------------------------------------------1.00--------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................CACTGCTGAGGAACAACAC..................1911.001.00---------1.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................AGGATCTGGCTTGTTCTGGGTGTGTGGCAGGGCAGTCTTTGGGTGACAGCTGTTTGTGGTGTCTCTCTTCTGCTCTGTGTCACAG..................................................8511.001.00--------------------------------------------------------1.00--------------------------------------------
............................................................................................................................................................................................................................................................................................TGTGGCAGGGCAGTCTTTGGGTGA.........................................................................................2411.001.00--------------------------------------------------1.00--------------------------------------------------
..........................AACTGTACCAAGGTCAAGCAGAAGCT.........................................................................................................................................................................................................................................................................................................................................................261.000.00-----------------------------------------------------------------------------1.00-----------------------
.................................................................................................................................................................................................................................................................................................................................TGTCTCTCTTCTGCTCT...........................................................1790.110.11------------------------------------------------------------0.11----------------------------------------

Antisense strand
ACAACCGCTGTAAAGACACCCTGGCCAACTGTACCAAGGTCAAGCAGAAGGTGAGCTAGATGGCAGGGTGGGCAGAGGGCTTGCGGGGAGGGCATCGCCATCCCTGCGGGCCTTTCCACACATCCCTCACCCTCTGTCCCTCTCCTTGCCGTGGGGCATCCCAGACCCTCGGCCTGTGTAAACACAGCCCTGCCACACTAGTTTACCTATATCCCGATGTCCTTAACTGCGGGGTCAACTTTCTCCCAAGAGGGCGGATGCCAGGATCTGGCTTGTTCTGGGTGTGTGGCAGGGCAGTCTTTGGGTGACAGCTGTTTGTGGTGTCTCTCTTCTGCTCTGTGTCACAGCAACAGAAAGCTGCACTGCTGAGGAACAACACTGCTTTGCAGTCTGTCTC
..........................................................................................................................................................................................................................................................................................((((..(((((((((.....(((.((((.((......)))))).)))..)))))))))..))))...................................................
.......................................................................................................................................................................................................................................................................................280................................................................347................................................
SizePerfect hitTotal NormPerfect NormSRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesWT4()
Testes Data. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR073954(GSM629280)
total RNA. (blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR206942(GSM723283)
other. (brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR038744(GSM527279)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553584(SRX182790)
source: Heart. (Heart)		mjLiverWT3()
Liver Data. (liver)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)
........................................................................................................................................................................................................................................................................................................................................................................................CACTGCTTTGCAGTCTCA... 181.000.00-----------------1.00-----------------------------------------------------------------------------------
....................................................................................................TCCCTGCGGGCCTTTGTGC...................................................................................................................................................................................................................................................................................... 191.000.00-----------------------------1.00-----------------------------------------------------------------------
..........................AACTGTACCAAGGTCAAAGA............................................................................................................................................................................................................................................................................................................................................................... 201.000.00------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................................AACACAGCCCTGCCAATCT...................................................................................................................................................................................................... 191.000.00-----------------1.00-----------------------------------------------------------------------------------
.....................................................................................................................................................................CCCTCGGCCTGTGTAAAGC..................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------------------------------------1.00--------
..............................................................................................................................TCACCCTCTGTCCCTACAC............................................................................................................................................................................................................................................................ 191.000.00-------------------------------1.00---------------------------------------------------------------------
....................................................................................................................................................................................AACACAGCCCTGCCAGATT...................................................................................................................................................................................................... 191.000.00-----------------1.00-----------------------------------------------------------------------------------
...........................................................................................................................................................................................................TACCTATATCCCGATGTCCTTACT.......................................................................................................................................................................... 241.000.00----------------------------------------------------------------1.00------------------------------------
........................................................................................................................................................................TCGGCCTGTGTAAACACA................................................................................................................................................................................................................... 181.000.00-------------------------------------------------------------------------------------------1.00---------
....................................................................................................TCCCTGCGGGCCTTTCTA....................................................................................................................................................................................................................................................................................... 181.000.00--------------------------------------1.00--------------------------------------------------------------
....................................................................................................TCCCTGCGGGCCTTTATGC...................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------1.00---------------------------------------------------------------------
.....................TGGCCAACTGTACCACT....................................................................................................................................................................................................................................................................................................................................................................... 171.000.00-----------------------------1.00-----------------------------------------------------------------------
.................................................................................................................................................................................GTAAACACAGCCCTGCCATGG....................................................................................................................................................................................................... 211.000.00------------------------------------------------------------------1.00----------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................GAACAACACTGCTTTGCAT........ 191.000.00-----------------------------1.00-----------------------------------------------------------------------
...................................................................................................................................................................GACCCTCGGCCTGTG........................................................................................................................................................................................................................... 1540.500.50-----------------0.25-----------0.25-----------------------------------------------------------------------
...............................................................................................................................................................................GTGTAAACACAGCCCT.............................................................................................................................................................................................................. 1630.330.33----------------------------------------------------------------------------------------------------0.33
...................................................................................................................................................................GACCCTCGGCCTGT............................................................................................................................................................................................................................ 1460.330.33-----------------0.33-----------------------------------------------------------------------------------