ID: uc007gtg.2
GENE: Apaf1(2)
chr10:90460033-90460282-


(1)
AGO1.ip 		(8)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(16)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(8)
EMBRYO 		(10)
ESC 		(3)
FIBROBLAST 		(1)
LIVER 		(2)
LYMPH 		(6)
OTHER 		(2)
OTHER.mut 		(2)
SKIN 		(3)
SPLEEN 		(6)
TESTES

Sense strand
TTTTTACTTGAGTAATTAATTAAAGGGAAATCCCAAAGTTGACAAGGTTGCAGGTTAGAGATTGGGCATCTTGTGAAAGCTTACACCACCAAACGTTTTCACTTGCAAGTGATTGACTTTTTGGCTGTGTAGCACCAGGGCAGGCCTTAGAGATGTTTAGAGTGTATTGACATTCCTAAACAAACCTAATTGCCTTCCAGATCTGGAGTTTTGACCTCCTTTCCCCTCTTCATGAGCTGAAGGGCCATAA
.........................................................................................................................................(((.((((.((((...((((((((((((....)))))).))))))...))))..)))))))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT2()
Testes Data. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		mjLiverWT1()
Liver Data. (liver)
..................................................................................................................................................................................AACAAACCTAATTGCCTTCCAGT.................................................23120.001.0010.00-------2.00---------1.00-1.00--------1.00---1.00------------1.00--1.00---1.001.00-----
............................................................................................................................................CAGGCCTTAGAGATGTTTAGA.........................................................................................21114.0014.00----4.00------3.001.001.00-------1.00-----------------1.00--1.00--------------1.001.00-
...........................................................................................................................................GCAGGCCTTAGAGATGTTTAG..........................................................................................2119.009.00-----4.00-------1.00----1.001.00----------------------------1.00--1.00--------
............................................................................................................................................CAGGCCTTAGAGATGTTTAG..........................................................................................2019.009.00-1.00-1.00----------2.001.00-1.00-------1.00------------1.00-1.00-------------------
............................................................................................................................................CAGGCCTTAGAGATGTTT............................................................................................1817.007.00-4.00-----2.00------1.00---------------------------------------------
..................................................................................................................................................................................AACAAACCTAATTGCCTTCCAGA.................................................2316.006.00------1.00-----1.00------1.00---------------1.00-------1.00------1.00---------
............................................................................................................................................CAGGCCTTAGAGATGTTTA...........................................................................................1914.004.00-3.00---------------------------------------------1.00------------
.................................................................................................................................................................................AAACAAACCTAATTGCCT.......................................................1813.003.00---3.00--------------------------------------------------------
......................................................................................................................................................................................AACCTAATTGCCTTCCAGT.................................................193.000.00---------3.00--------------------------------------------------
......................................................................................................................................................................................................................................CATGAGCTGAAGGGCCAT..1812.002.00--1.00---1.00-----------------------------------------------------
...........................................................................................................................................GCAGGCCTTAGAGATGTTTA...........................................................................................2012.002.00--------1.00------1.00--------------------------------------------
........................................................................................................................................................................................................................................TGAGCTGAAGGGCCACCA182.000.00-----------------------1.00----------------------------1.00-------
.........................................................................................CAAACGTTTTCACTTCAC...............................................................................................................................................182.000.00--2.00---------------------------------------------------------
.....................................................................................................................................................................................................................................TCATGAGCTGAAGGGCCG...181.000.00----------------1.00-------------------------------------------
...........................................................................................................................................GCAGGCCTTAGAGATGTTTAT..........................................................................................2111.002.00-----------------1.00------------------------------------------
...........................................................................................................................................GCAGGCCTTAGAGATGTTT............................................................................................1911.001.00-1.00----------------------------------------------------------
.................................................................................................................................................................................AAACAAACCTAATTGCCTTCCAGA.................................................2411.001.00----------------------1.00-------------------------------------
..................................................................................................................................................................................AACAAACCTAATTGCCTTCCAG..................................................2211.001.00--------------------------------1.00---------------------------
..................................................................................................................................................................................AACAAACCTAATTGCCTTCCAGTAGA..............................................2611.001.00-------------1.00----------------------------------------------
........................................................................................................................................AGGGCAGGCCTTAGAGATGTTT............................................................................................2211.001.00-------------------------------1.00----------------------------
........................................................................................................................................AGGGCAGGCCTTAGAGATGTTTA...........................................................................................2311.001.00-------------------------------------------------------1.00----
.....................................................................................................................................ACCAGGGCAGGCCTTCAGA..................................................................................................191.000.00-------------------------------------1.00----------------------
.......................................................................................ACCAAACGTTTTCACCGGC................................................................................................................................................191.000.00----------1.00-------------------------------------------------
...................................................................................................................................................................................ACAAACCTAATTGCCTTCCAGT.................................................221.000.00-----------------------------------------1.00------------------
...................................................................................................................................................................................................................................CTTCATGAGCTGAAGGGCCAT..2111.001.00--------------------------------------------1.00---------------
............................................................................................................................................................................................................................TTCCCCTCTTCATGAGCTGAAG........2211.001.00---------------------------1.00--------------------------------
.....................................................................................................................................................................................................................................TCATGAGCTGAAGGGCCAT..1911.001.00--1.00---------------------------------------------------------
............................................................................................................................................CAGGCCTTAGAGATGTTTAGAAA.......................................................................................2311.0014.00--------------------------1.00---------------------------------
............................................................................................................................................CAGGCCTTAGAGATGTTTAGAG........................................................................................2211.001.00--------------------------------------------------------1.00---
........................................................................................................................................................................................................ATCTGGAGTTTTGACTCCG...............................191.000.00-------1.00----------------------------------------------------
.....................................................................................................................................................................................AAACCTAATTGCCTTCCAG..................................................1911.001.00------------------------1.00-----------------------------------
.......................................................................................................................................CAGGGCAGGCCTTAGAGATGTTTA...........................................................................................2411.001.00--------------------1.00---------------------------------------

Antisense strand
TTTTTACTTGAGTAATTAATTAAAGGGAAATCCCAAAGTTGACAAGGTTGCAGGTTAGAGATTGGGCATCTTGTGAAAGCTTACACCACCAAACGTTTTCACTTGCAAGTGATTGACTTTTTGGCTGTGTAGCACCAGGGCAGGCCTTAGAGATGTTTAGAGTGTATTGACATTCCTAAACAAACCTAATTGCCTTCCAGATCTGGAGTTTTGACCTCCTTTCCCCTCTTCATGAGCTGAAGGGCCATAA
.........................................................................................................................................(((.((((.((((...((((((((((((....)))))).))))))...))))..)))))))....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesWT3()
Testes Data. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206939(GSM723280)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesWT2()
Testes Data. (testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		mjLiverWT1()
Liver Data. (liver)
.................................................................................................................................................................................................................TTTGACCTCCTTTCCCGT....................... 185.000.00------1.00-----1.00---1.00-------------1.00-----1.00-----------------------
......................................................................................................................................................................................................................CCTCCTTTCCCCTCTACG.................. 182.000.00----------2.00-------------------------------------------------
.......................................................................................................................................................................................ACCTAATTGCCTTCCAGTTC............................................... 201.000.00----------------------------------1.00-------------------------
..................................................................................ACACCACCAAACGTTTTAGT.................................................................................................................................................... 201.000.00---------------------------------------------1.00--------------
.................................................................................................................................................................................................................TTTGACCTCCTTTCCCGTT...................... 191.000.00----------------------------1.00-------------------------------
...............................................................................CTTACACCACCAAAC............................................................................................................................................................ 1560.170.17---------------------0.17--------------------------------------
...........................................................................AAAGCTTACACCACC................................................................................................................................................................ 1580.120.12-----------------------------------------------------------0.12