| (2) AGO1.ip | (2) AGO3.ip | (9) BRAIN | (1) CELL-LINE | (2) EMBRYO | (1) ESC | (1) LIVER | (1) OTHER.mut | (3) PANCREAS | (2) PIWI.ip | (4) SKIN | (5) TESTES | (1) THYMUS |
| CTCAGTGGTCCAACTTGTTTTCTGTTCCTTCTCCTGTGACATGCCTGGCTGGGGGTAGCTGTGCCTCTCTTCATCCCTCGGGGAATAACTGGGGTCAGGAGGGTCTGTGTGTGGGGGGACCCAATGTTTCCAGGGGAGGTGGTATGGTCTCAGCGGGGTCCGGGTTGGCTGTGACAACATGACTACCACTGTCTCCCCAGGCTGTGGGGTCCCTGCCATCCAACCCGTGCTGACCGGTCTGTCCAGGATC ....................................................................................................................................(((((((..((.(((((....(((...))).((((.......))))..)))))..))..))))))).................................................... ..............................................................................................................................127......................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR065058(SRR065058) Tissue-specific Regulation of Mouse MicroRNA . (pancreas) | SRR065059(SRR065059) Tissue-specific Regulation of Mouse MicroRNA . (pancreas) | SRR042481(GSM539873) mouse pancreatic tissue [09-002]. (pancreas) | Ago1IP812(Rui) Quantitative functions of Argonaute proteins . (ago1 skin) | SRR279905(GSM689055) cell type: mouse embryonic stem cellcell line. (ESC) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR345199(SRX097260) source: size fractionated RNA from mouse hipp. (brain) | Ago1IP517(Rui) Quantitative functions of Argonaute proteins . (ago1 skin) | SRR206939(GSM723280) other. (brain) | mjTestesWT3() Testes Data. (testes) | Ago3IP812(Rui) Quantitative functions of Argonaute proteins . (ago3 skin) | SRR346417(SRX098258) Global profiling of miRNA and the hairpin pre. (Brain) | SRR038744(GSM527279) small RNA-Seq. (brain) | SRR391846(GSM852141) gender: femalegenotype/variation: ADAR2-/-tis. (embryo) | Ago3IP805(Rui) Quantitative functions of Argonaute proteins . (ago3 skin) | SRR391848(GSM852143) gender: femalegenotype/variation: wild typeti. (embryo) | SRR059765(GSM562827) DN3_control. (thymus) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR077866(GSM637803) 18-30 nt small RNAs. (liver) | SRR685339(GSM1079783) "Small RNAs (15-50 nts in length) from immort. (cell line) | SRR345201(SRX097262) source: size fractionated RNA from mouse hipp. (brain) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR345203(SRX097264) source: size fractionated RNA from mouse hipp. (brain) | SRR345198(SRX097259) source: size fractionated RNA from mouse hipp. (brain) | SRR345200(SRX097261) source: size fractionated RNA from mouse hipp. (brain) | SRR345202(SRX097263) source: size fractionated RNA from mouse hipp. (brain) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCA.................................................................................................. | 21 | 1 | 7.00 | 7.00 | 2.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TGACTACCACTGTCTCCCCAGA................................................. | 22 | 1 | 6.00 | 1.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAG................................................................................................. | 22 | 1 | 5.00 | 5.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAAA................................................................................................ | 23 | 1 | 5.00 | 7.00 | 1.00 | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TGACTACCACTGTCTCCCCAGT................................................. | 22 | 1 | 4.00 | 1.00 | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACATGACTACCACTGTCTCCCCAGT................................................. | 25 | 3.00 | 0.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................ATGACTACCACTGTCTCCCCAGA................................................. | 23 | 1 | 3.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTC................................................................................................... | 20 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................ATGACTACCACTGTCTCCCCAG.................................................. | 22 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................CGTGCTGACCGGTCTGTCCAGGATC | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TGACTACCACTGTCTCCCCAGAA................................................ | 23 | 1 | 2.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................ATGACTACCACTGTCTCCCCAGAA................................................ | 24 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCT.................................................................................................. | 21 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAGCATT............................................................................................. | 26 | 1 | 2.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................ACATGCCTGGCTGGGGGTAGCTGTGCCTCTCT.................................................................................................................................................................................... | 32 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................AGGGTCTGTGTGTGGGACAT................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAA................................................................................................. | 22 | 1 | 1.00 | 7.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGCCT.................................................................................................... | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAGC................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................CATGACTACCACTGTCTCCCCAGAA................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................AATGTTTCCAGGGGAAGGC............................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................CCAGGGGAGGTGGTATGGTCTCA.................................................................................................. | 23 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAGTT............................................................................................... | 24 | 1 | 1.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................GTGCTGACCGGTCTGTCCAGGAT. | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TGACAACATGACTACCACTGTCTCCCCAGAA................................................ | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................CAACCCGTGCTGACCGGTCTGT........ | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCTAT................................................................................................ | 23 | 1 | 1.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................ATGCCTGGCTGGGGGGGGC............................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TGACTACCACTGTCTCCCCAG.................................................. | 21 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................TCCAACCCGTGCTGACCGGTCTGT........ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................GACTACCACTGTCTCCCCAGAA................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CATGACTACCACTGTCTCCCCAGA................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................TTCTGTTCCTTCTCCGC...................................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................GCTGACCGGTCTGTCCAGGAT. | 21 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCT.................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TGGCTGGGGGTAGCTGGGAG......................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................TCCAACCCGTGCTGACCGGTCTGTC....... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................CCAACCCGTGCTGACCGGT............ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................ATCCAACCCGTGCTGACCGGTCTGTCCAGGATC | 33 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAGT................................................................................................ | 23 | 1 | 1.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................AGGGGAGGTGGTATGGTCTCAGA................................................................................................ | 23 | 1 | 1.00 | 5.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................GAGGTGGTATGGTCTGAG................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................GTCAGGAGGGTCTGTGTG........................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................AGGCTGTGGGGTCCCTG................................... | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - |
| ......................................................................................................................................GGAGGTGGTATGGTC..................................................................................................... | 15 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - |
| CTCAGTGGTCCAACTTGTTTTCTGTTCCTTCTCCTGTGACATGCCTGGCTGGGGGTAGCTGTGCCTCTCTTCATCCCTCGGGGAATAACTGGGGTCAGGAGGGTCTGTGTGTGGGGGGACCCAATGTTTCCAGGGGAGGTGGTATGGTCTCAGCGGGGTCCGGGTTGGCTGTGACAACATGACTACCACTGTCTCCCCAGGCTGTGGGGTCCCTGCCATCCAACCCGTGCTGACCGGTCTGTCCAGGATC ....................................................................................................................................(((((((..((.(((((....(((...))).((((.......))))..)))))..))..))))))).................................................... ..............................................................................................................................127......................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR065058(SRR065058) Tissue-specific Regulation of Mouse MicroRNA . (pancreas) | SRR065059(SRR065059) Tissue-specific Regulation of Mouse MicroRNA . (pancreas) | SRR042481(GSM539873) mouse pancreatic tissue [09-002]. (pancreas) | Ago1IP812(Rui) Quantitative functions of Argonaute proteins . (ago1 skin) | SRR279905(GSM689055) cell type: mouse embryonic stem cellcell line. (ESC) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR345199(SRX097260) source: size fractionated RNA from mouse hipp. (brain) | Ago1IP517(Rui) Quantitative functions of Argonaute proteins . (ago1 skin) | SRR206939(GSM723280) other. (brain) | mjTestesWT3() Testes Data. (testes) | Ago3IP812(Rui) Quantitative functions of Argonaute proteins . (ago3 skin) | SRR346417(SRX098258) Global profiling of miRNA and the hairpin pre. (Brain) | SRR038744(GSM527279) small RNA-Seq. (brain) | SRR391846(GSM852141) gender: femalegenotype/variation: ADAR2-/-tis. (embryo) | Ago3IP805(Rui) Quantitative functions of Argonaute proteins . (ago3 skin) | SRR391848(GSM852143) gender: femalegenotype/variation: wild typeti. (embryo) | SRR059765(GSM562827) DN3_control. (thymus) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR077866(GSM637803) 18-30 nt small RNAs. (liver) | SRR685339(GSM1079783) "Small RNAs (15-50 nts in length) from immort. (cell line) | SRR345201(SRX097262) source: size fractionated RNA from mouse hipp. (brain) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR345203(SRX097264) source: size fractionated RNA from mouse hipp. (brain) | SRR345198(SRX097259) source: size fractionated RNA from mouse hipp. (brain) | SRR345200(SRX097261) source: size fractionated RNA from mouse hipp. (brain) | SRR345202(SRX097263) source: size fractionated RNA from mouse hipp. (brain) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................GTTTCCAGGGGAGGTGGGTCC........................................................................................................ | 21 | 7.00 | 0.00 | - | - | - | 1.00 | - | - | - | 2.00 | 1.00 | - | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................CTGCCATCCAACCCGTGCTGACCGGT............ | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - |
| ..........................................................................................................................................................................................CACTGTCTCCCCAGGCCG.............................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................GTTTTCTGTTCCTTCTCCTGTGACA................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................GTTTCCAGGGGAGGTGGGTC......................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............TGTTTTCTGTTCCTTCTCCTGTGACA................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........TCCAACTTGTTTTCTGTTCCTTCTCCT....................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................ATGTTTCCAGGGGAGGTGCCAA......................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................CTACCACTGTCTCCCCGTAG................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................GTTTCCAGGGGAGGTGGGTTC........................................................................................................ | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................GTTTCCAGGGGAGGTGGGT.......................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................CATCCAACCCGTGC.................... | 14 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | - |
| .........................................................................................................................................................................................CCACTGTCTCCCCAGG................................................. | 16 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 |