ID: mmu-mir-7053
GENE: Pold1(15)
chr7:51793426-51793746-


(1)
AGO.mut 		(2)
AGO1.ip 		(8)
AGO2.ip 		(2)
AGO3.ip 		(11)
B-CELL 		(14)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(5)
EMBRYO 		(9)
ESC 		(4)
FIBROBLAST 		(2)
LIVER 		(4)
LYMPH 		(15)
OTHER 		(7)
OTHER.mut 		(2)
PIWI.ip 		(3)
PIWI.mut 		(4)
SKIN 		(6)
SPLEEN 		(22)
TESTES 		(3)
THYMUS

Sense strand
AATCTGTGCTACACCACGCTGCTCCGACCTGGGGCTGCCCAGAAGCTGGGGTATGCTGCCTTTATCTAGGCTGCCCCCCCCCCCAAGCCTCCCTGAGCCCTGGTTTCCGGACTTGAAAGATCAGGTCCAGGGAAATGAGAGTCAGGGATTTGATGGGCTGTGGATGCGGCAGATGGGGAGGCTGCAGCAGGTCCTGGGGGAGCTGGGGAAAGGCAGGCTACTGGGGAGCTGGGTAGTTCGGAAGCCCAGCCTCCTGTGTCTCCTTCCCCAGCCTTAAACCAGATGAGTTCATCAAGACACCCACTGGGGATGAGTTTGTGA
..........................................................................................................................................................................................................((((((.((((.((((.((.((((.(((((((.........))))))))))).))))))))))))))))..................................................
......................................................................................................................................................................................................199.....................................................................271................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGT.................................................22167.005.0040.007.00-2.00---3.00-2.005.00----2.00-1.00----------1.00--------------1.00---------------------------------------1.001.00---1.00--------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGT.................................................23120.004.002.005.00---------3.001.00----1.00----------------------2.00---------------1.001.00-----1.00--------1.00------1.00--1.00--------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGG.................................................................................................21114.0014.00------1.00--1.00----------------1.00------1.00--1.00--1.00--1.00--1.00------1.00-----------1.00----1.001.00----------------1.00---1.00-----------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGA.................................................23111.004.002.00----6.00------1.00-------1.00---------1.00------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGG................................................................................................22111.0011.001.00-----1.00--------------------1.00-1.00----1.00--------1.00-1.00--1.00----------------------------1.001.00-----------1.00------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGA.................................................2219.005.003.002.00-2.00------------1.00-------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGC.................................................2219.009.007.00-----------------------------------------------------------------------------------------------1.00----1.00-
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGGGT.....................................................................................................................................................................................267.000.00----7.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGA................................................................................................2217.0014.001.00-----1.00-----------1.00-------1.00-------1.00---------------------------------------1.00-----------------------1.00----
..................................................................................................................GAAAGATCAGGTCCAGGG.............................................................................................................................................................................................1816.006.00--2.00-------------2.00-------1.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGA...............................................................................................2315.0011.00---1.00--1.00----------------------1.00------1.00-------1.00----------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAG..................................................2115.005.005.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TGGGCTGTGGATGCGGCAGATGGGG...............................................................................................................................................2514.004.00--------2.00--------------1.00---------------------------1.00---------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGAGA.....................................................................................................................................................................................2614.004.00--1.00-------------1.001.00--------------------------------1.00----------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTA................................................2314.005.003.001.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGAGCTGGGTAGTTCGGAAGCCCAGCCTCCTGTGTCTCCTTCCCCAGT.................................................694.000.00-------------------4.00-----------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAG..................................................2214.004.00-------2.00---------------------------------------1.00----1.00--------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGGGA.....................................................................................................................................................................................263.000.00-----------------------------------2.00---------------------------------------------1.00---------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGGC...................................................................................................................................................................2613.003.00--1.00---------------------1.001.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTAT...............................................2413.005.003.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTG..................................................................................................2013.003.00------------------------------------------------------1.00------------------------------1.00----------------1.00
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACT...................................................................................................1913.003.00-------------1.00---------------------------1.00-----------------------------------------------1.00-------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGCA................................................2313.009.002.00-----------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................GGGTAGTTCGGAAGCCCAG........................................................................1913.003.00-------------------------------------2.00----------------------------1.00------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAT..................................................2113.002.001.00-------------2.00----------------------------------------------------------------------------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGG....................................................................................................................................................................2513.003.00--2.00-----------------------------------------------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCA...................................................2113.003.00-1.00----------1.00-------1.00----------------------------------------------------------------------------------
.......................................................................................................................................................................................GCAGCAGGTCCTGGGTTCG.......................................................................................................................193.000.00------------------2.00--------------------------------------------------------------------------1.00---------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGAGC............................................................................................2612.002.00---------1.00--------------------------------------1.00------------------------------------------------------
..........................................................................................................................................................................................................CTGGGGAAAGGCAGGCTACT...................................................................................................2012.002.00-------------1.00--------------------------------------------------------------1.00--------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGT................................................................................................2212.0014.00-------------------------------------------------2.00-----------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGA.................................................................................................2112.003.00------------------------------1.00----------1.00-------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGAT................................................2312.005.001.001.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................TAAACCAGATGAGTTCATCAAGACACCC...................2812.002.00---------------2.00---------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGG...............................................................................................2312.002.00-1.00----1.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGAAT...............................................2412.005.002.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCA...................................................2012.002.001.00-------------------------------------1.00----------------------------------------------------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGGCTG.................................................................................................................................................................2812.002.00-----------------1.00------1.00------------------------------------------------------------------------------
.........................................................................................................................................................TGGGCTGTGGATGCGGCAGATGG.................................................................................................................................................2312.002.00--------------2.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAA..................................................2112.002.001.001.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................AAACCAGATGAGTTCATCAAGAC.......................2312.002.00--------------------------------------------------------------------1.00--1.00-------------------------------
...................................................................................................................................GAAATGAGAGTCAGGGATTTGATGGGC...................................................................................................................................................................2711.001.00--1.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGCA.............................................................................................2511.002.00-------------1.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAAT.................................................2211.002.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................TTTGATGGGCTGTGGATGCGGCAGAT...................................................................................................................................................2611.001.00----------------------1.00--------------------------------------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATT........................................................................................................................................................................................231.000.001.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TTGATGGGCTGTGGATGCGGCAGATGG.................................................................................................................................................2711.001.00---------------------------------------------------1.00---------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGTGAT..............................................2611.004.001.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGATT...............................................2411.005.001.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCGAGT.................................................221.000.001.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCATTT................................................2411.003.00-----------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGATT..............................................................................................2411.0014.00------------------------------------------------------1.00------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCATAA................................................2311.002.00-------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................TTGATGGGCTGTGGATGCGGCAGATG..................................................................................................................................................2611.001.00----------------------1.00--------------------------------------------------------------------------------
...............................................................................................................................................................................................................GAAAGGCAGGCTACTGGGGAGC............................................................................................2211.001.00-------------1.00-----------------------------------------------------------------------------------------
.................................................................................................................TGAAAGATCAGGTCCAGGGAAATGAGA.....................................................................................................................................................................................2711.001.00-----------------------------------------------------------------1.00-------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGAT..............................................................................................2411.0011.00-----------------------------------------------------1.00-------------------------------------------------
............................................................................................................................................................................................................................................................................................GAGTTCATCAAGACAGAGT..................191.000.00-------------------------------1.00-----------------------------------------------------------------------
................................................................................................................................................................TGGATGCGGCAGATGGGGAGGATGT........................................................................................................................................251.000.00---------------------1.00---------------------------------------------------------------------------------
.............................TGGGGCTGCCCAGAATTT..................................................................................................................................................................................................................................................................................181.000.00------------------------------------------1.00------------------------------------------------------------
...............................................................................................................................................................GTGGATGCGGCAGATGGGGAGGCT..........................................................................................................................................2411.001.00----------------------------1.00--------------------------------------------------------------------------
.......................................................................................................................................................................................GCAGCAGGTCCTGGGTTT........................................................................................................................181.000.00---------------------------------1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................CCTTAAACCAGATGAGTTCATCAAGA........................2611.001.00---1.00---------------------------------------------------------------------------------------------------
.......................CCGACCTGGGGCTGCCCA........................................................................................................................................................................................................................................................................................1811.001.00-----------------------1.00-------------------------------------------------------------------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGGAGCTGG.........................................................................................2411.001.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGGG...................................................................................................................................................................2611.003.00---------------------1.00---------------------------------------------------------------------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGGAGCT...........................................................................................2211.001.00--------------------------------------------------------------------------------1.00----------------------
.........................................................................................TCCCTGAGCCCTGGTTTCCGGA..................................................................................................................................................................................................................2211.001.00-----------------------------------------------1.00-------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGAT...............................................................................................2311.0014.00--------------------------1.00----------------------------------------------------------------------------
.......................................................................................................................................TGAGAGTCAGGGATTTGATGGGCTGT................................................................................................................................................................2611.001.00--1.00----------------------------------------------------------------------------------------------------
........................CGACCTGGGGCTGCCC.........................................................................................................................................................................................................................................................................................1611.001.00---------------------------------------------------------------------------------------------------1.00---
.................................................................................................................TGAAAGATCAGGTCCAGGGAAATGAGAGT...................................................................................................................................................................................2911.001.00-----------------------------------------------------------------------------------------------1.00-------
.......................................................................................................................................................GATGGGCTGTGGATGCGGCAG.....................................................................................................................................................2111.001.00-----------------------------------------------------------1.00-------------------------------------------
............................................................................................................................................................................................................GGGGAAAGGCAGGCTACTGGGGAGCT...........................................................................................2611.001.00----------------------------1.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTAATG..................................................................................................201.000.00--------------------------------1.00----------------------------------------------------------------------
..............................................................................................................................................CAGGGATTTGATGGGCTGTGGATGC..........................................................................................................................................................2511.001.00----------------------------------------------------------------------------------------------------1.00--
.........................................................................................................................................................................................................................................................................................GATGAGTTCATCAAGACACCCA..................2211.001.00---------------------------1.00---------------------------------------------------------------------------
.........................................................................................................................................................TGGGCTGTGGATGCGGCAGATGGGGAG.............................................................................................................................................2711.001.00--------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................GATGGGCTGTGGATGCGGCAGATGG.................................................................................................................................................2511.001.00--------------------------------------------------------------------------------------------1.00----------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGAG................................................2411.004.00---------1.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCGG..................................................2111.001.00-------------------------------------------------------------1.00-----------------------------------------
................................GGCTGCCCAGAAGCTGGA...............................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------1.00---------------------------
....................................GCCCAGAAGCTGGGGGCA...........................................................................................................................................................................................................................................................................181.000.00-------------------------------1.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCATT.................................................2211.002.00-----------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGC.................................................2311.001.00--------------------------------------------------------------1.00----------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCACT.................................................2311.003.00--------------------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTAA...............................................2411.005.001.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................GAAAGGCAGGCTACTGGGGAGCTAA.........................................................................................251.000.00-------------------------------------------------------------------------------------------------1.00-----
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGAG...............................................................................................2311.0014.00------------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................AATGAGAGTCAGGGATTTGATGGGC...................................................................................................................................................................2511.001.00--------1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................TTTGATGGGCTGTGGATGCGGCAGATG..................................................................................................................................................2711.001.00-------------------------1.00-----------------------------------------------------------------------------
..................................................................................................................................................................................................TGGGGGAGCTGGGGACTGT............................................................................................................191.000.00----------------------------------------------------------------------------------------------1.00--------
......................................................................................................................................................TGATGGGCTGTGGATGCGGCAGATGT.................................................................................................................................................261.000.00----------------------1.00--------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTTT...............................................2411.005.001.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGATGGGCTGTGGATGCGGCAGAAGTA................................................................................................................................................271.000.00-------------------------------------------------------------------------1.00-----------------------------
.......................................................................................................................................................................................GCAGCAGGTCCTGGGGGCCA......................................................................................................................201.000.00------------------------------------------------------------1.00------------------------------------------
..........................................................................................................................................................................................................CTGGGGAAAGGCAGGCTACTGG.................................................................................................2211.001.00------1.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCC....................................................1911.001.00----------------------------------------------1.00--------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGCAA...............................................2411.009.001.00------------------------------------------------------------------------------------------------------
.................................................................................................................TGAAAGATCAGGTCCAGGGAAATGAG......................................................................................................................................................................................2611.001.00---------------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGAG................................................2311.005.00---------------------------------------1.00---------------------------------------------------------------
.....................................................................................................................................AATGAGAGTCAGGGATTTGATGGGCT..................................................................................................................................................................2611.001.00---------------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGAG.............................................................................................2511.001.00--------1.00----------------------------------------------------------------------------------------------
.......................CCGACCTGGGGCTGCC..........................................................................................................................................................................................................................................................................................1611.001.00-1.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGAA...............................................................................................2311.0014.00--------------------------------------------1.00----------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGA..............................................................................................2411.001.00---1.00---------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTATA..............................................2511.005.001.00------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGGAA.............................................................................................201.000.00--------------------------------1.00----------------------------------------------------------------------
..........................................................................................................................................................GGGCTGTGGATGCGGCAGATGGAAAA.............................................................................................................................................261.000.00-------------------------------------------------------1.00-----------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGT.................................................................................................2111.003.00-------------------------------------------------------------------1.00-----------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGC................................................................................................2211.0014.00-----------------------------1.00-------------------------------------------------------------------------
.........................................................................................................................................................................................................................................TAGTTCGGAAGCCCAGC.......................................................................1711.001.00---1.00---------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGTAGC............................................................................................211.000.00--------------------------------------1.00----------------------------------------------------------------
...........................CCTGGGGCTGCCCAGAAGCTG.................................................................................................................................................................................................................................................................................2111.001.00-----------------------1.00-------------------------------------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGAGAGTC..................................................................................................................................................................................2911.001.00--1.00----------------------------------------------------------------------------------------------------

Antisense strand
AATCTGTGCTACACCACGCTGCTCCGACCTGGGGCTGCCCAGAAGCTGGGGTATGCTGCCTTTATCTAGGCTGCCCCCCCCCCCAAGCCTCCCTGAGCCCTGGTTTCCGGACTTGAAAGATCAGGTCCAGGGAAATGAGAGTCAGGGATTTGATGGGCTGTGGATGCGGCAGATGGGGAGGCTGCAGCAGGTCCTGGGGGAGCTGGGGAAAGGCAGGCTACTGGGGAGCTGGGTAGTTCGGAAGCCCAGCCTCCTGTGTCTCCTTCCCCAGCCTTAAACCAGATGAGTTCATCAAGACACCCACTGGGGATGAGTTTGTGA
..........................................................................................................................................................................................................((((((.((((.((((.((.((((.(((((((.........))))))))))).))))))))))))))))..................................................
......................................................................................................................................................................................................199.....................................................................271................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR685340(GSM1079784)
"Small RNAs (15-50 nts in length) from immort. (dicer cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR014231(GSM319955)
16.5 dpc total. (testes)		mjTestesWT2()
Testes Data. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR394084(GSM855970)
"background strain: C57BL6/SV129cell type: KR. (dicer cell line)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
..........................................................................................CCCTGAGCCCTGGTTCGC..................................................................................................................................................................................................................... 181.000.00-----------------------------------------------------1.00-------------------------------------------------
...................................................................................................................................................................................................................................................................CTCCTTCCCCAGCCTCGAC........................................... 191.000.00--------------------------------------------------------------------------------------1.00----------------
................................................................................................GCCCTGGTTTCCGGACGG............................................................................................................................................................................................................... 181.000.00----------------------------------------------------------1.00--------------------------------------------
..................................................................................CCAAGCCTCCCTGAGCG.............................................................................................................................................................................................................................. 171.000.00----------------------------------------------1.00--------------------------------------------------------
....................................................................................................................................................................................................................................................................TCCTTCCCCAGCCTTA............................................. 1630.330.33-------------------------------0.33-----------------------------------------------------------------------