ID: mmu-mir-7043
GENE: Rassf4(6)
chr6:116595946-116596195-


(1)
AGO.mut
(2)
AGO1.ip
(6)
AGO2.ip
(1)
AGO3.ip
(9)
B-CELL
(30)
BRAIN
(1)
CELL-LINE
(1)
DCR.mut
(2)
DGCR8.mut
(10)
EMBRYO
(4)
ESC
(13)
HEART
(3)
KIDNEY
(19)
LIVER
(1)
LUNG
(21)
OTHER
(8)
OTHER.mut
(1)
OVARY
(3)
PANCREAS
(2)
PIWI.ip
(1)
PIWI.mut
(2)
SKIN
(4)
SPLEEN
(29)
TESTES
(3)
TOTAL-RNA
(3)
UTERUS

Sense strand
TGTGATTCATCTCAGAACAGTTACCCGTTCTAAGGGATAGCTTCCACTCCTTCCAACAGATGCTGTGGGGAGCTTTCTACTATACTGATAAAATTCACCACACTCAGCCCTTGGGCTCCTCACTTGTGTCCTGCCTGTGAAAGCAGAGAGGCATTTTTCTCTGTCGCAGCTACTTGAGTACTGTGCCTCTCTGTTTTCAGAAAGGAAGCTTCACCCCAGGACAGCAAGGTCCCCACTGAAGAGCCTGGCA
.........................................................................................................................................(((((((((((((((((....(((..............)))....)))))))))))))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT3()
Liver Data. (liver)
mjTestesWT4()
Testes Data. (testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesWT1()
Testes Data. (testes)
mjLiverKO2()
Liver Data. (Zcchc11 liver)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
mjLiverWT2()
Liver Data. (liver)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206940(GSM723281)
other. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206942(GSM723283)
other. (brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR206939(GSM723280)
other. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR060845(GSM561991)
total RNA. (brain)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR206941(GSM723282)
other. (brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR346415(SRX098256)
source: Testis. (Testes)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR037906(GSM510442)
brain_rep3. (brain)
GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
SRR037901(GSM510437)
testes_rep2. (testes)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR073954(GSM629280)
total RNA. (blood)
SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR037900(GSM510436)
testes_rep1. (testes)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR095855BC9(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGT.................................................221480.0065.0036.0037.0046.003.006.0028.0030.0023.00-5.0013.00-13.0012.0011.009.009.005.007.0013.0010.0010.007.006.005.00-5.007.007.003.00-3.00-3.005.004.001.004.004.004.002.001.00-3.003.003.001.003.004.00-3.00-1.00-3.001.003.00-3.003.00-3.00-1.001.00-2.001.001.001.001.00-1.002.00--2.001.002.00-1.00-2.002.001.00-2.00-1.00----2.002.00--1.002.001.00----1.001.00-1.00---1.00-1.001.00----1.00----1.001.00------1.00---1.00------1.00-------1.00----
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGT.................................................231126.0023.00-7.006.001.008.006.005.007.0015.00-5.0017.003.001.004.001.006.00-6.00-2.001.003.002.00-1.003.00----1.001.00----1.001.00--2.00----1.00--------1.00----1.00--1.00--1.00----------1.00-----------------------1.00----------------1.00----------------------1.00-----1.00--------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGA.................................................221120.00120.0025.004.006.0043.009.001.00---2.001.00----5.001.001.00-----2.003.005.00----3.00---1.00------1.00---1.00------------------2.00----1.00----------------------2.00--1.00------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAG..................................................21165.0065.0012.0012.0012.00--2.004.00-----1.004.00---3.001.00---1.00---1.00-----3.00-------2.00---------1.00-----------------1.00-1.00----------1.00-----------------1.00--------------------1.00---------------------1.00-------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGA.................................................23151.0051.002.003.00-2.0011.001.001.004.0019.001.00-----1.00-----1.00--------1.00------------------1.00---1.00-----------1.00---------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAG..................................................22123.0023.00-1.00--4.004.001.00--1.00------1.00-------------1.00-----1.00--1.00-1.00---------1.001.002.00--------------------------1.00----1.00----------------1.00-----------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCA...................................................20114.0014.00-4.00---1.00-------------------2.00---------------------------1.00-------------2.00-----------2.00---------------1.00---------------------------------------1.00--------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGTA................................................23113.0065.00----6.002.00---1.001.00-------1.00----------------------------------------------1.00---------------------------------------------------1.00--------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAA................................................23112.0012.00-4.00-1.00-----4.00----1.00-----------------1.00-------------------1.00-------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAGT.................................................24112.003.00-----1.00-7.00------1.00------1.00---------------------------1.00----------------------------------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCA...................................................21111.0011.00-3.00-4.00-----1.00-------1.00------1.00------1.00----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTT............................................................................................2319.009.00-1.00-------------------------------------------------------------------1.00---------------1.00-1.00--2.00-------------------1.00-----------------------------1.00-----1.00---------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTC...........................................................................................2418.008.00-----------------------------2.001.00-----2.00--------------1.00--1.00------------------------------------------------------------------------------------------1.00----------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAGT...............................................2418.00120.008.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCA...................................................2217.007.00-2.00----1.00-----------------------1.00---------------------1.00-----------------------------------1.00--------------------1.00----------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTC....................................................2117.007.00---2.00--1.00---------------------------------1.00-----------------------------1.00-2.00-----------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTT.............................................................................................2217.007.00-----1.00-------------------------1.00----------1.00---1.00-----------------------------------------------------------1.00----------------1.00--------------------------1.00-----
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGTT................................................2415.0023.005.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGAA................................................2415.005.00-1.00--4.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTT.....................................................2015.005.004.00---------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTTT............................................................................................2115.005.005.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTT............................................................................................2214.004.00-----1.00------------------------------------1.00------------------------------------------------------1.00----------------------------1.00-----------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGTTT...............................................2414.0065.00-------------------------------------------------------2.00-----------------1.00---------------------------------------------------------------1.00------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAT..................................................2114.0014.00-1.00-------1.00-------1.00---------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCATT.................................................2214.0014.00-1.00---------------1.00---------------------------------1.00---------------------------------------------------------------------------------1.00----------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAG................................................2313.00120.00--3.00---------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGTGCCTCTCTGTTTTCAGT.................................................213.000.00---------2.00---------1.00----------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAG..................................................2313.003.00---------1.00-----------------------1.00---------------1.00----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGC.................................................2213.0065.00-----1.00-------------------------------------------1.00-------------1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTAAGT.................................................232.000.00-----------2.00------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAAA...............................................2412.002.00-----------------1.00-------------------------1.00----------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGTA................................................2412.0023.00------------1.00----------------------------------1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTT...........................................................................................2412.009.00--------------------------------1.00--------------------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTC....................................................1912.002.00-----1.00-------------------------------------------------------------------------------------------------------------------------------------1.00----------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTAAC...................................................182.000.00-----------------------------------------------------------------------2.00------------------------------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTTC...........................................................................................2312.002.00-----1.00-------------------------------------------------------------------------------------------------------------1.00----------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTTTCTC.........................................................................................2412.002.00------------------------------------1.00------------------------------------------------------------------------------------------1.00----------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCACC.................................................2312.0011.00-----------------------------2.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAT................................................2312.00120.00-------------1.00-----------1.00----------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................CTGTGAAAGCAGAGAGGCATTTT.............................................................................................2312.002.00-----------------------------------1.00---------------------------------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAAA.................................................2311.0011.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCCGTT................................................2311.002.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGAGTTT.............................................2411.001.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGT.................................................201.000.00---------------------------1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCGA..................................................2311.007.00------------------------------------------------------------------------------------------------------------1.00-----------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTC....................................................2011.001.00---------------------------------1.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAAT...............................................2411.0012.00-------------------------------------------------------------------------------------------------------1.00----------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAGAA................................................2511.001.00------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTA....................................................2111.005.00-----------------------------------------------------------------------------------------------------------------------------------------------------1.00------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAAG.................................................2211.0014.00------------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGAAG...............................................221.000.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTA............................................................................................2311.007.00--------------------------------------------------------------------------------------------------------------------------1.00---------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTTA...........................................................................................2311.004.00------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTCT..........................................................................................2511.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGA.................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTT..............................................................................................2111.001.00------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGTTT...............................................2511.0023.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTAAA...................................................201.000.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCA.................................................................................................1831.001.00------------------------0.67-------------------------------0.33---------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTA............................................................................................221.000.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTA...........................................................................................2411.009.00---------------------------------------------------------------------------------------1.00--------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCATTAA...............................................2411.0014.00---------------------------------------------------1.00--------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGTA................................................211.000.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTCAGT...................................................211.000.00---------------------------1.00--------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCT...................................................2211.007.00--------------------------------------------------------------------------------------------------------------------------------------------------------1.00---
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAC..................................................2211.0011.00----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTA....................................................191.000.00--------------------------------------------1.00---------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTTT...................................................201.000.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCATA.................................................2211.0014.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................ATTCACCACACTCAGCCCTTGGGC......................................................................................................................................2411.001.00--------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTTTC...........................................................................................2211.001.00-------------------------------------------------------------------------------------------------------------------------1.00----------------------------------
......................................................................................................................................................................................GTGCCTCTCTGTTTTCAGT.................................................191.000.00------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAA..................................................2311.007.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGG.................................................2211.0065.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTT.............................................................................................2011.001.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AAGCAGAGAGGCATTTGA............................................................................................1860.170.17----------------------------------------------------------------------------------------------------------------------------------------------------------0.17-
............................................................................................................................................AAGCAGAGAGGCATTT..............................................................................................1660.170.17-----------------------------------------------------------------------------------------------------------------------------------------------------------0.17

Antisense strand
TGTGATTCATCTCAGAACAGTTACCCGTTCTAAGGGATAGCTTCCACTCCTTCCAACAGATGCTGTGGGGAGCTTTCTACTATACTGATAAAATTCACCACACTCAGCCCTTGGGCTCCTCACTTGTGTCCTGCCTGTGAAAGCAGAGAGGCATTTTTCTCTGTCGCAGCTACTTGAGTACTGTGCCTCTCTGTTTTCAGAAAGGAAGCTTCACCCCAGGACAGCAAGGTCCCCACTGAAGAGCCTGGCA
.........................................................................................................................................(((((((((((((((((....(((..............)))....)))))))))))))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT3()
Liver Data. (liver)
mjTestesWT4()
Testes Data. (testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesWT1()
Testes Data. (testes)
mjLiverKO2()
Liver Data. (Zcchc11 liver)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
mjLiverWT2()
Liver Data. (liver)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206940(GSM723281)
other. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206942(GSM723283)
other. (brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR206939(GSM723280)
other. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR060845(GSM561991)
total RNA. (brain)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR206941(GSM723282)
other. (brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR346415(SRX098256)
source: Testis. (Testes)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR037906(GSM510442)
brain_rep3. (brain)
GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
SRR037901(GSM510437)
testes_rep2. (testes)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR073954(GSM629280)
total RNA. (blood)
SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR095853(SRX039174)
"sequencing of miRNA from wild type and disea. (heart)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR037900(GSM510436)
testes_rep1. (testes)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR037903(GSM510439)
testes_rep4. (testes)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR095855BC9(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTT............................................................................................ 2315.005.00--------------------------------------------------------------2.00------------2.00------------------------1.00-------------------------------------------------------
........................................CTTCCACTCCTTCCAACAGATGCTG......................................................................................................................................................................................... 2514.004.00----4.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTT.............................................................................................. 2113.003.00-------------------------------------------------------------------------------------------1.00----1.00---1.00-------------------------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGCAA........................................... 203.000.00-----------------------------------------------------------------------------------------2.00--------------------------------------------1.00---------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGGAA........................................... 2012.002.00--------------------------------------------------------------------------1.00--------------------------------------------------------1.00------------------------
.............................................ACTCCTTCCAACAGATTGAT......................................................................................................................................................................................... 202.000.00---------------------------------------------------------2.00--------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTTC........................................................................................... 2312.002.00-------------------------------------------------------------------------------------------1.00----1.00-----------------------------------------------------------
.........................................................................................................................................................................................................AAGGAAGCTTCACCCCAGGAC............................ 2112.002.00--------------------------------------------------------------1.00------------1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAACT............................................. 181.000.00----------------------------------------------------------------------------------------------------------------1.00-------------------------------------------
........................................................................................................................................................................................GCCTCTCTGTTTTCACTGT............................................... 191.000.00--------------------------------------------------------------------------------------------------------------------------------1.00---------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAATAA............................................. 181.000.00----------------------------------------------------------------------------------------------------------------------------------------------------1.00-------
.........................................TTCCACTCCTTCCAACCGC.............................................................................................................................................................................................. 191.000.00------------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
..........CTCAGAACAGTTACCGCC.............................................................................................................................................................................................................................. 181.000.00-----------------------------------------------------------------------1.00------------------------------------------------------------------------------------
.................................................................................................................GGCTCCTCACTTGTGACA....................................................................................................................... 181.000.00--------------------------------------------------------------------------------------------------------------------1.00---------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGGAAC.......................................... 211.000.00--------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGGAACA......................................... 221.000.00--------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTT..................................................... 1811.001.00----------------------------------------------------------------------------------------------------------------------------------1.00-------------------------
.....................................................................................................ACTCAGCCCTTGGGCCGG................................................................................................................................... 181.000.00---------------------------------------------------------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAACC............................................. 181.000.00------------------------------------------------------------------------------------------------------------------------------------------1.00-----------------
........................................................................................................................................................................................................................................CCACTGAAGAGCCTGGCA 181.000.00--------------------------------------------------------------------1.00---------------------------------------------------------------------------------------
.......................CCCGTTCTAAGGGA..................................................................................................................................................................................................................... 1450.200.20---------------------------------------------------------------------------------------------------------------------------------------------------------0.20--