ID: mmu-mir-6982
GENE: Camk2a(8)
chr18:61117595-61117844+


(1)
AGO1.ip 		(13)
AGO2.ip 		(1)
B-CELL 		(37)
BRAIN 		(1)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(1)
ESC 		(1)
FIBROBLAST 		(1)
LIVER 		(1)
LUNG 		(7)
OTHER 		(1)
PIWI.ip 		(2)
SPLEEN 		(2)
TESTES

Sense strand
GGAGGTTGAGGACAGAGGCTTAGCGTGTGAGACACGAGTGTCGCCATCTGGCTCTGGCACCCGTGTTTCTAAGTGCTTCGTGGATACCTGAGTGTTTGGGTTTGAGAATCCCTGCCTGCCCCCCTGCCAGTCAGGGGCTGGAGGATCGCAGGGGTGGCCTGGGGCAGGCTAGGCAAACCTGGCCCCTCTGCCCCTTCCAGTTCCCATCACCAGAATGGGACACCGTCACCCCAGAAGCCAAGGATCTGAT
.....................................................................................................................................(((((.(((((.((.((((.....)))).))..(((((((....)))))))))))))))))........................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206940(GSM723281)
other. (brain)		SRR206939(GSM723280)
other. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR073955(GSM629281)
total RNA. (blood)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037937(GSM510475)
293cand2. (cell line)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAGT.................................................22146.0046.0012.005.00--3.003.00-1.001.00-2.001.003.001.001.001.00-2.00--2.002.00----1.00----1.00-----1.00----1.00--1.001.00-------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAG..................................................2115.005.00-1.00-1.00-1.001.00-------1.00---------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAGTT................................................2315.005.00-1.001.00-1.001.00----1.00-------------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAT..................................................2115.003.00-1.00-1.00----1.00--1.00--1.00---------------------------------------
........................................................................................................................................GCTGGAGGATCGCAGGGGTGGCCTGGT.......................................................................................2714.003.00-1.001.00------1.00--------1.00-----------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCA...................................................2013.003.00--1.001.00---1.00----------------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCATT.................................................2213.003.00----1.001.00-----1.00------------------------------------------
........................................................................................................................................GCTGGAGGATCGCAGGGGTGGCCTGG........................................................................................2613.003.00-1.00-1.00-----1.00--------------------------------------------
.........................................................................................................................................CTGGAGGATCGCAGGGGTGGCCTGGT.......................................................................................262.000.00--1.00-------------1.00-------------------------------------
..........................................................................................................................................TGGAGGATCGCAGGGGTGGCCTGA........................................................................................242.000.00---1.00-----1.00--------------------------------------------
.............................................................................................................................................................................................................................ACCGTCACCCCAGAAGC............1712.002.00------2.00-----------------------------------------------
........................................................................................................................................GCTGGAGGATCGCAGGGGTGGCCTGGA.......................................................................................2712.003.00---1.00---------1.00----------------------------------------
............................................................................................................................................GAGGATCGCAGGGGTGGCCTGG........................................................................................2212.002.00-----1.00-1.00----------------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCC...................................................2011.001.00-----------------------------1.00------------------------
........................................................................................................................................GCTGGAGGATCGCAGGGGTGGCCTGGG.......................................................................................2711.001.00------------------1.00-----------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAGTCT...............................................2411.0046.00------------------------------------------------1.00-----
...................................................................................................................................................................................................................................ACCCCAGAAGCCAAGGATCT...2011.001.00--1.00---------------------------------------------------
....................................................................................................................................................................................GGCCCCTCTGCCCCTTCCAGT.................................................2111.001.00--1.00---------------------------------------------------
......................................................................................................................................GGGCTGGAGGATCGCTTT..................................................................................................181.000.00---------------------------------------1.00--------------
............................................................................................................................................................................................................................CACCGTCACCCCAGAAGCCA..........2011.001.00----------1.00-------------------------------------------
...........................................................................................................................................GGAGGATCGCAGGGGTGGCCTGG........................................................................................2311.001.00--------------------------------------1.00---------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCTT..................................................2111.001.00------------------------------------1.00-----------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAGTTCT..............................................251.000.00----1.00-------------------------------------------------
........................................................................................................................................GCTGGAGGATCGCAGGGGTGA.............................................................................................211.000.00---------------1.00--------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAGAAT...............................................2411.005.00--------1.00---------------------------------------------
.............................................................................................................................................................CCTGGGGCAGGCTAGGCAA..........................................................................1911.001.00------------------------1.00-----------------------------
..................................................................................................................................................CGCAGGGGTGGCCTGCTGT.....................................................................................191.000.00----------------------------------1.00-------------------
................................................................................................................................................................................................................................GTCACCCCAGAAGCCAAGGATCT...2311.001.00------1.00-----------------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCC....................................................1911.001.00-------1.00----------------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCATC.................................................2211.003.00-----------------------------------------1.00------------
........................................................................................................AGAATCCCTGCCTGCCACCC..............................................................................................................................201.000.00-----------------------1.00------------------------------
..............................................................................................................................................................................................................................CCGTCACCCCAGAAGCCAAGG.......2111.001.00------1.00-----------------------------------------------
..............................................................................................................................................................................................................................CCGTCACCCCAGAAGCCA..........1811.001.00-------------1.00----------------------------------------
..........................................................................................................................................TGGAGGATCGCAGGGGTGCCTG..........................................................................................221.000.00---------1.00--------------------------------------------
.........................................................................................................................................CTGGAGGATCGCAGGGGTGG.............................................................................................2011.001.00-1.00----------------------------------------------------
..........................................................................................................................................TGGAGGATCGCAGGGGTGGCC...........................................................................................2111.001.00--------------------------------------------------1.00---
................................................................................................................................................................................................................................GTCACCCCAGAAGCCAAGGATCTGAT2611.001.00------1.00-----------------------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAGA.................................................2211.005.00--1.00---------------------------------------------------
......................................................................................................................................................................................CCCCTCTGCCCCTTCCAGTTT...............................................211.000.00--1.00---------------------------------------------------
...............................................................................................................................................................................................................................CGTCACCCCAGAAGCCAAGGATC....2311.001.00----------------1.00-------------------------------------
............................................................................................................................................GAGGATCGCAGGGGTGGCCTGGAA......................................................................................2411.002.00--------------------------------------------1.00---------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCCGT.................................................2211.001.00---1.00--------------------------------------------------
.................................................................................................................................................TCGCAGGGGTGGCCTGGGGCAGA..................................................................................231.000.00-------1.00----------------------------------------------
..........................................................................................................AATCCCTGCCTGCCCAGGG.............................................................................................................................191.000.00-----------------------1.00------------------------------
................................................................................................................................AGTCAGGGGCTGGAGA..........................................................................................................161.000.00-------------------------1.00----------------------------
.................................................................................................................................................................................................................CCAGAATGGGACACCGTCACC....................2111.001.00----------------------1.00-------------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAAAG................................................2311.003.00--------1.00---------------------------------------------
...............................................................................................................................................................................................................CACCAGAATGGGACACCGTCAC.....................2211.001.00----------------------1.00-------------------------------
........AGGACAGAGGCTTAGCGTGTGAGACA........................................................................................................................................................................................................................2611.001.00-----------------------------------1.00------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAA..................................................2111.003.00----1.00-------------------------------------------------
........................................................................................................................................GCTGGAGGATCGCAGGGGTGGCCTGA........................................................................................261.000.00--1.00---------------------------------------------------
..........................................................................................................................................TGGAGGATCGCAGGGGTGGCCTGGT.......................................................................................251.000.00---1.00--------------------------------------------------
...........................................................................................................................................GGAGGATCGCAGGGGTGGCCTG.........................................................................................2211.001.00---------------------------------1.00--------------------
.....................................................................................................................................GGGGCTGGAGGATCGCTT...................................................................................................181.000.00------------------------------1.00-----------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCTTCCAAT.................................................2211.003.00-----------------------------------------------1.00------
........................................................................................................................................................................................................................................AGAAGCCAAGGATCTGA.1740.250.25------------------------0.25-----------------------------
..........................................................................................................................................................................................................................................AAGCCAAGGATCTGAT1670.140.14-----------------------------------------------------0.14

Antisense strand
GGAGGTTGAGGACAGAGGCTTAGCGTGTGAGACACGAGTGTCGCCATCTGGCTCTGGCACCCGTGTTTCTAAGTGCTTCGTGGATACCTGAGTGTTTGGGTTTGAGAATCCCTGCCTGCCCCCCTGCCAGTCAGGGGCTGGAGGATCGCAGGGGTGGCCTGGGGCAGGCTAGGCAAACCTGGCCCCTCTGCCCCTTCCAGTTCCCATCACCAGAATGGGACACCGTCACCCCAGAAGCCAAGGATCTGAT
.....................................................................................................................................(((((.(((((.((.((((.....)))).))..(((((((....)))))))))))))))))........................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR206941(GSM723282)
other. (brain)		SRR206940(GSM723281)
other. (brain)		SRR206939(GSM723280)
other. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR073955(GSM629281)
total RNA. (blood)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR037937(GSM510475)
293cand2. (cell line)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TGGCCCCTCTGCCCCTGG..................................................... 182.000.00-------------------1.00-------1.00--------------------------
............CAGAGGCTTAGCGTGGA............................................................................................................................................................................................................................. 171.000.00----------------------------1.00-------------------------
...................................................................................................................................................................................TGGCCCCTCTGCCCCAGG..................................................... 181.000.00-------------------------------------------------1.00----
.................................................................................................................................................................................................CTTCCAGTTCCCATCATGGC..................................... 201.000.00-------------------------------------------1.00----------
...................................................................................................................................................................................TGGCCCCTCTGCCCCAAA..................................................... 181.000.00-------------------1.00----------------------------------
...............................................CTGGCTCTGGCACCCGAA......................................................................................................................................................................................... 181.000.00----------------------------------------1.00-------------
...............................................................TGTTTCTAAGTGCTTGCTG........................................................................................................................................................................ 191.000.00--------------------------------1.00---------------------
...GGTTGAGGACAGAGGC....................................................................................................................................................................................................................................... 1640.250.25---------------------------------------------------0.25--
...............................................................................................................................................................................................CCCTTCCAGTTCCCAT........................................... 1650.200.20----------------------------------------------------0.20-