ID: mmu-mir-6973b
GENE: Gfra4(3)
chr2:130866012-130866184-


(14)
AGO2.ip 		(34)
BRAIN 		(2)
DGCR8.mut 		(1)
EMBRYO 		(3)
ESC 		(1)
LUNG 		(6)
OTHER 		(3)
OTHER.mut 		(5)
PIWI.ip 		(1)
PIWI.mut 		(1)
SPLEEN 		(17)
TESTES 		(3)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGTT
...................................................((((...((((((((.(((((((.(((........))).))).......)))).)))))...)))..))))...................................................
..................................................51.............................................................................130.........................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		mjTestesWT4()
Testes Data. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
.......................................................................................................TGCTCTCTTACCCTTCCTAGTTT...............................................23110.002.00---1.00------1.002.001.00-------2.002.00------------1.00--------------------------------
..................................................GTAGGTATGGGGAGAGGACAG......................................................................................................2119.009.00----1.00-6.00---------------------------1.00----------1.00---------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGTT................................................2219.002.00--1.00------------2.00------1.00--------1.001.00---1.001.00----------------------1.00------
.......................................................................................................TGCTCTCTTACCCTTCCTAGT.................................................2119.002.00--1.00-------2.00---------------------1.00--1.001.00--1.00--------1.00------------1.00-----
.....................................................................................................TGTGCTCTCTTACCCTTCCTAGT.................................................238.000.00---2.00-1.00----1.00--------------------1.00-----1.00--------------1.00---------1.00----
..................................................GTAGGTATGGGGAGAGGACAGGGA...................................................................................................2417.007.00-1.001.00------1.00----------------1.00--1.001.00--1.00---------------------------------
..................................................GTAGGTATGGGGAGAGGACA.......................................................................................................2016.006.00---1.001.00--------------2.00-1.00----------------------1.00----------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGA.................................................2115.002.00----------------------------2.00---------2.00------------------1.00---------
.....................................................................................................TGTGCTCTCTTACCCTTCCTAGTT................................................245.000.00-----4.00-------------1.00-----------------------------------------------
......................................................................................................GTGCTCTCTTACCCTTCCTAGT.................................................225.000.00-----1.00----------------2.00--1.00---------------1.00-------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAGTC......2715.005.00-------1.001.00-------3.00--------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGG.....................................................................................................2214.004.00----1.00-------1.00------------1.00----------------------------1.00------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTT................................................................................................2714.004.00-3.00-------1.00---------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGT.................................................................................................2614.004.00-2.00------------------------1.00------1.00---------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGT.................................................7414.003.004.00------------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAG..................................................7313.003.003.00------------------------------------------------------------------
.............TCTGCAGGACCAGACTGCTGGGT.........................................................................................................................................2313.003.00------------------3.00------------------------------------------------
...................................................TAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGT.................................................733.000.003.00------------------------------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAGTCC.....2812.002.00---------2.00---------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGG....................................................................................................2312.002.00-----1.00----1.00--------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAG..................................................................................................2512.002.00-1.00------1.00----------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGAC........................................................................................................1912.002.00--1.00-----------------1.00----------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGATA.................................................................................................2612.007.00-------2.00-----------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGA.....................................................................................................2212.009.00----1.00----------------------------------------------1.00---------------
..................................................GTAGGTATGGGGAGAGGACAGGGAAT.................................................................................................2612.007.00----2.00--------------------------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAG........2512.002.00------------------------------1.00---------------1.00--------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAG..................................................2012.002.00--1.00--------1.00-------------------------------------------------------
.................................................................................................................................CACGAGTGGCCTGAGAAGAGCTGGAGGCA...............2911.001.00-----------------------1.00-------------------------------------------
...............................................................................................................TACCCTTCCTAGGCAAGGCACGAGTGGC..................................2811.001.00-------------1.00-----------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGA.................................................7411.003.001.00------------------------------------------------------------------
...............................................................................................................................................GAAGAGCTGGAGGCAGAAACAGTCCTT...2711.001.00--1.00----------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGAAGA......................................................................................................211.000.00-------------------------------------------------------1.00-----------
......................................................................................................GTGCTCTCTTACCCTTCCTCGT.................................................221.000.00-----------------------1.00-------------------------------------------
..................................................................GACAGGGAGTTGACAGTGGAA......................................................................................211.000.00--------------------------------------------------------1.00----------
.......................................................................................................TGCTCTCTTACCCTTCCTATTTT...............................................231.000.00---1.00---------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACT.......................................................................................................2011.002.00-----------------1.00-------------------------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGTTA...............................................2311.002.00--1.00----------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGA.................................................................................................2611.002.00-1.00-----------------------------------------------------------------
...................................................................................................TCTGTGCTCTCTTACCCTTCCTAGGC................................................2611.001.00--------1.00----------------------------------------------------------
....................................................................................................................................GAGTGGCCTGAGAAGAGCTGG....................2111.001.00---------------------------1.00---------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGT.....................................................................................................2211.009.00-----------1.00-------------------------------------------------------
............................TGCTGGGTGCTGTTTCCCGCGGGTAT.......................................................................................................................261.000.00--------------------------------------------------1.00----------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAGT.......2611.001.00--------------1.00----------------------------------------------------
.....................................................................................................................TCCTAGGCAAGGCACGAGTGGCCTGAGC............................2811.001.00-------------1.00-----------------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAA...........2211.001.00--------1.00----------------------------------------------------------
................................................................AGGACAGGGAGTTGAGTC...........................................................................................181.000.00-------------------------------------------------1.00-----------------
......................................................................................................GTGCTCTCTTACCCTTCCTAGA.................................................221.000.00---1.00---------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTT...............................................................................................2811.004.00-------1.00-----------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGT...................................................................................................2411.002.00-1.00-----------------------------------------------------------------
......................................................................................................GTGCTCTCTTACCCTTCCTAGTT................................................231.000.00-----------------------------------------------------------1.00-------
.......................................................................................................TGCTCTCTTACCCTTCCTAGTCT...............................................2311.002.00------------1.00------------------------------------------------------
...................................................TAGGTATGGGGAGAGGACAGGGAGTT................................................................................................2611.001.00-------1.00-----------------------------------------------------------
...................................................TAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGA.................................................731.000.001.00------------------------------------------------------------------
..........................................TCCCGCGGGTAGGTATGGGGAGAGGA.........................................................................................................2611.001.00--------1.00----------------------------------------------------------
...................GGACCAGACTGCTGGGTGC.......................................................................................................................................1911.001.00---1.00---------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGAT...................................................................................................2411.004.00----1.00--------------------------------------------------------------
...................................................TAGGTATGGGGAGAGGACAGGGAGT.................................................................................................2511.001.00---------------------------1.00---------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGGGT.................................................................................................2611.002.00------------------------------------------1.00------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAT..................................................................................................2511.007.00--------------1.00----------------------------------------------------
......................................TGTTTCCCGCGGGTAGGTATGGGGAGG............................................................................................................271.000.00-------------1.00-----------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTG...............................................................................................2811.001.00----------------------------------------------------------------1.00--
..................................................GTAGGTATGGGGAGAGGACAGGGAA..................................................................................................2511.007.00-1.00-----------------------------------------------------------------
.....................................................................................................................TCCTAGGCAAGGCACGAGTGGCCTGAG.............................2711.001.00----------------------------------------1.00--------------------------
..................................................GTAGGTATGGGGAGAGGAT........................................................................................................191.000.00-----------------------------------1.00-------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAATAGT.......2611.001.00--------------1.00----------------------------------------------------
..................................................................................................ATCTGTGCTCTCTTACCCTTCCTAGGCA...............................................2811.001.00---------------------------------------------------------------1.00---
....................................................................................................................................GAGTGGCCTGAGAAGAGCTGGAGGCAA..............271.000.00-----------------------1.00-------------------------------------------
...............................................................................................................TACCCTTCCTAGGCAAGGCACGAGTG....................................2611.001.00-----------------------------------------------1.00-------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGCT................................................2211.002.00---------------1.00---------------------------------------------------
.......................................................................................................................................TGGCCTGAGAAGAGCAGAA...................191.000.00-----------------------------1.00-------------------------------------
..................................................GTAGGTATGGGGAGAGG..........................................................................................................1750.400.40-----------------------------------------------------------------0.40-
.....................................................................................................................................AGTGGCCTGAGAAGAG........................1680.120.12------------------------------------------------------------------0.12
..................................................GTAGGTATGGGGAGAG...........................................................................................................1690.110.11-------------------------0.11-----------------------------------------

Antisense strand
TGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGTT
...................................................((((...((((((((.(((((((.(((........))).))).......)))).)))))...)))..))))...................................................
..................................................51.............................................................................130.........................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		mjTestesWT4()
Testes Data. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR206939(GSM723280)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
...............................................CGGGTAGGTATGGGGAA............................................................................................................. 172.000.00------------------------2.00------------------------------------------
.......................CAGACTGCTGGGTGCTCGT................................................................................................................................... 191.000.00-----------------1.00-------------------------------------------------
....................................................................................TCCGAATCCTTCCCATAC....................................................................... 181.000.00-----------------------------------------------------1.00-------------
.......................CAGACTGCTGGGTGCTCTTT.................................................................................................................................. 201.000.00-----------------1.00-------------------------------------------------
....................GACCAGACTGCTGGGTGCT...................................................................................................................................... 1911.001.00----------------------------------------------------------1.00--------
..............................................GCGGGTAGGTATGGGGA.............................................................................................................. 171.000.00------------------------1.00------------------------------------------
..............................CTGGGTGCTGTTTCCCGAA............................................................................................................................ 191.000.00-------------------------------------------1.00-----------------------
..CAGCCATCAGTTCTGC........................................................................................................................................................... 1640.250.25---------------------------------------0.25---------------------------