ID: mmu-mir-6909
GENE: Ppap2c(4)
chr10:78993724-78993973-


(1)
AGO.mut 		(3)
AGO1.ip 		(7)
AGO2.ip 		(2)
AGO3.ip 		(9)
B-CELL 		(14)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(9)
EMBRYO 		(7)
ESC 		(7)
FIBROBLAST 		(3)
KIDNEY 		(12)
LIVER 		(2)
LUNG 		(4)
LYMPH 		(22)
OTHER 		(4)
OTHER.mut 		(3)
PANCREAS 		(1)
PIWI.mut 		(6)
SKIN 		(4)
SPLEEN 		(10)
TESTES 		(1)
TOTAL-RNA 		(2)
UTERUS

Sense strand
TGAAGAGGCAGCTCTAGGGAGCCCTGAAGTGAGGAGAGGCTATAGCTGGGTAGAGCTGCTGAGTAGTTGGGCTCATTCAAAGAAGCCAATGGAGTAGTTTCCAGTGAGGGCATGCACAGTGGCCATGATAGATGTGCAGATAACAGGGGGGCTGGAATGGGCACTGCGGAGAACCATGTGCCTTCCCCGGCCTCCCACAGCCTCTCTGCCTTTCATCATCCTGACCCTGGTGAATGCACCATATAAGCGG
.................................................................................................................................................((((((((((...((((((...((....))..))))))...))))))))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjLiverWT1()
Liver Data. (liver)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		mjLiverWT3()
Liver Data. (liver)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		mjTestesWT3()
Testes Data. (testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		GSM416732(GSM416732)
MEF. (cell line)		SRR065050(SRR065050)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACT.....................................................................................221310.00310.00138.0054.008.0019.0020.0019.00-6.00---1.001.001.003.002.00--1.003.003.00-2.002.001.00--1.00--1.001.001.001.00--1.001.00-1.00---------1.00--2.00--------1.00--2.00-----1.001.001.00-----1.00---1.00-1.00-----1.00----------1.00---1.00---1.001.00-----1.00--
...............................................................................................................................................CAGGGGGGCTGGAATGGGCAC......................................................................................21140.0040.0018.003.003.003.00---2.00----1.00-1.00-1.00-------1.001.00-1.00---1.001.001.00--------------------------------1.00--------------------------------------------------1.00-
...............................................................................................................................................CAGGGGGGCTGGAATGGGCA.......................................................................................20130.0030.0011.002.002.001.00-----1.00-1.00------1.00------------1.00-1.002.00--------1.00--1.00---------------2.00----1.00---------------1.00--1.00--------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTT....................................................................................23117.00310.002.002.00-3.00-1.00----------1.003.00---1.00-------------1.00------------1.001.00------------------------------1.00--------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACT.....................................................................................21114.0014.00-1.001.00-4.00--------1.00--1.00------1.00------2.00----1.00-----------------------------1.00-------------------1.00---------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCAC......................................................................................22113.0013.002.00-1.001.00---1.00-3.00------1.00---------------1.00---------------1.00---------------------------------------------------------1.00-1.00----------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCAT......................................................................................21112.0030.002.00-1.00--2.001.00------2.00----------------------1.00-2.00----------------------------------------------------------1.00---------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTA....................................................................................23112.00310.004.001.001.00--2.00----1.00--1.00--------1.00-------1.00----------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCA.......................................................................................21111.0011.001.003.00--------------------------1.00--------------1.00-------1.00---2.00---------1.00--------1.00--------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACAGT.................................................2319.002.00--2.00--1.00----3.00------------------1.00---------------------------1.00-1.00-----------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCATT.....................................................................................2319.0011.00------1.00-7.00-------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGC........................................................................................1918.008.003.002.001.00--1.00------------1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCAT......................................................................................2218.0011.00-1.001.00-----3.00--------------1.00-----1.00-1.00---------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACA.....................................................................................2217.0040.003.001.00-2.00--------1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACA...................................................2117.007.00----------3.00---------------4.00--------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCAA......................................................................................2116.0030.00-1.001.00---1.00--2.00-----------------1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTAT...................................................................................2416.00310.00------------1.00-1.00----------1.00---------------------------------------------------------------------1.00--------1.00----------1.00---
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACT.....................................................................................2316.006.00----1.00------1.00--------1.00------1.00------------------------------1.00--------------1.00---------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCAA......................................................................................2216.0011.00-1.001.00--------1.00---------1.00-----------------------------------------1.00-----1.00-------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCAAT.....................................................................................2315.0011.00------1.00--2.00------------------1.00-------------------------------1.00----------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCAC......................................................................................2015.005.00--2.00----------------------------------1.00-----------------------------1.00--------------------1.00------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCAAT.....................................................................................2215.0030.002.00-1.00------------------------------------------------1.00--------1.00----------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCAT......................................................................................2315.001.00--1.00----------------1.00----------------------3.00----------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACA.....................................................................................2314.0013.00--1.001.00------------------------------------------------------1.00----1.00-------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGC........................................................................................2014.004.002.00-2.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTTTT..................................................................................2413.0014.00------------------------1.00-------------------1.00----------------------------------------------------------1.00---------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACAAA...................................................................................2413.0040.00------1.00---------------1.00---------------------------------1.00--------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCAATT....................................................................................2513.001.00--1.00------------------------------------------------------1.00---1.00---------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCCCT.....................................................................................2213.008.003.00----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTT....................................................................................2213.0014.00-1.00--1.00-------------1.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCATAT....................................................................................2413.0011.00-----------------3.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACC.....................................................................................2213.0040.001.001.00------------------------------------------------------------------------------------------------1.00--------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACAA....................................................................................2413.0013.00---------------1.00-----2.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCAAA.....................................................................................2313.0011.00--1.00------1.00-----------------------------------------------------------------------1.00-------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGG.........................................................................................1822.502.500.501.00----0.50-------------------------------------0.50--------------------------------------------------------------------------
..........................................................................................................................................................................................................................TCCTGACCCTGGTGAATGCA............2012.002.00--------------------------------------------------2.00--------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCAAA.....................................................................................2212.0030.00-1.00--------------------------------------------1.00------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTAA...................................................................................2412.00310.00-----------1.00-----------------------------------------1.00-----------------------------------------------------------------
.................................................................................................................................................GGGGGGCTGGAATGGGCACT.....................................................................................2012.002.00---1.001.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCATT.....................................................................................2212.0030.00-------------1.001.00--------------------------------------------------------------------------------------------------------
...........................................AGCTGGGTAGAGCTGCTGAGT..........................................................................................................................................................................................2112.002.00---------------------------------------2.00-------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCATAT....................................................................................2512.001.00-----------------------------------------------2.00-----------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACAGA.................................................2312.002.001.00-------------------------------------------1.00--------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACAA....................................................................................2212.005.00------2.00----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCATA.....................................................................................2212.0030.00---------------2.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACAG..................................................2212.002.00--1.00--------------------------1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGG.........................................................................................1921.501.50----0.500.50-------0.50---------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTAATT.................................................................................2611.00310.00------------------1.00----------------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCAAGA....................................................................................2511.001.00----------------------------1.00------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCATTT....................................................................................2311.0030.00------------------------------------1.00----------------------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACTT..................................................221.000.00--1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTA....................................................................................2211.0014.00----------------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCA.......................................................................................2211.001.00-------------------------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACAAAG..................................................................................2511.0040.00---------------------------------------------------------------------------------------------------1.00-------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACAAT...................................................................................2511.0013.00-----------------------------------------1.00-----------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTGAAAT................................................................................261.000.00-------------------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACG.....................................................................................2211.0040.00-----------------------------------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTAG...................................................................................2411.00310.00-------1.00---------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCGCT.....................................................................................2211.008.001.00----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCCC......................................................................................2111.008.001.00----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................GGCACTGCGGAGAACTA..........................................................................171.000.00---------------------------------------------1.00-------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGTA........................................................................................2021.000.50----------1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACAGTAT...............................................2511.002.00--1.00--------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCATTT....................................................................................2411.0011.00------1.00----------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACA.....................................................................................2111.005.00------------1.00----------------------------------------------------------------------------------------------------------
...........................................AGCTGGGTAGAGCTGGTG.............................................................................................................................................................................................181.000.00----------------------------------------------------------------------------1.00------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACAT....................................................................................2311.0040.00------1.00----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTAAGT.................................................................................2611.00310.00--------------------------------------------------------1.00--------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATTGGA........................................................................................201.000.00-----------------------------1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCAAAA....................................................................................2411.0011.00--1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCATT.....................................................................................2111.001.00---1.00-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCAAG.....................................................................................2411.001.00-----1.00-----------------------------------------------------------------------------------------------------------------
................................................................................................................TGCACAGTGGCCATGTCCT.......................................................................................................................191.000.00----------------------------------------------------------------------------------------------1.00------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCAG......................................................................................2211.0011.00--------------------------------1.00--------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTTTA..................................................................................2511.00310.00------------------------1.00----------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCACT.....................................................................................2411.001.00--------------------1.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCATTT..................................................221.000.00--1.00--------------------------------------------------------------------------------------------------------------------
...........................................AGCTGGGTAGAGCTGCTGAGTAGT.......................................................................................................................................................................................2411.001.00----------------------------------------------------------------------------------------------------1.00------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCATA.....................................................................................2411.001.00--------------------------------------1.00--------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCA.......................................................................................1911.001.00---------------------------------------------------------------------------------------------------------------1.00-------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCATTTT...................................................................................2411.0030.00-----------1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACAAGT..................................................................................2611.0013.00--1.00--------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGAA.......................................................................................2121.001.50-1.00---------------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTGAGA.................................................................................251.000.00----------------------------------1.00------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTTTT..................................................................................2511.00310.00------1.00----------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACC.....................................................................................2311.0013.00------------------------------------------------------------------1.00----------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTAA...................................................................................2311.0014.00----------------------------------------------------------------------------------------------------------------1.00------
...............................................................................................................................................CAGGGGGGCTGGAATGGTCAT......................................................................................211.000.00------------------------------------------------------------------------------------------------------------------1.00----
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACAGA...................................................................................2411.0040.001.00----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGTGCA.......................................................................................221.000.00---------------------------------------------------------------------------------------1.00-------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTAAA..................................................................................2411.0014.00-----------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTTAT..................................................................................2511.00310.001.00----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACAA..................................................2211.007.00-----------------------------------------------------------1.00-----------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCATAA....................................................................................2311.0030.00---------------1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCATA.....................................................................................2311.0011.00--1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCATTT....................................................................................2211.001.00-------------------------------------1.00---------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACTGA...................................................................................251.000.00------------------------------------------------------------------------------------------------1.00----------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCAT......................................................................................2011.001.00--1.00--------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCAC......................................................................................2311.001.00-------------------------1.00---------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGAA.......................................................................................2221.000.50------------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTAAA..................................................................................2511.00310.00----------------------------1.00------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTGTTT.................................................................................251.000.00------------------1.00----------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGAAAA......................................................................................201.000.00-----------------------------------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTAGT..................................................................................2511.00310.00-1.00---------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACAT....................................................................................2411.0013.00-1.00---------------------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTAT...................................................................................2311.0014.00----------------------1.00------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCCC......................................................................................2211.004.00-----------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGAACT.....................................................................................211.000.00----1.00------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGTA.......................................................................................2121.001.50-1.00---------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACTAAA..................................................................................2611.006.00------------------------------------------------------1.00----------------------------------------------------------------
........................................................................................................................................................................................CCCCGGCCTCCCACACACC...............................................191.000.00------------------------------------------------------1.00----------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGGCAA......................................................................................2311.001.00--------------------------------------------------------------------------------------------1.00--------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCAAGA....................................................................................2311.0030.00-------------------------------------------------------------------------------------------1.00---------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGCACTTAA..................................................................................2411.0014.00----------1.00------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACGA....................................................................................2311.0040.00-----------------------------------------------------1.00-----------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCACTAA...................................................................................2511.006.00-----------------------------------------------------------------------------------------------------------------1.00-----
...............................................................................................................................................CAGGGGGGCTGGAATGGGCAAATA...................................................................................2411.0030.00---------------------------------------------------------------------------------------------1.00-------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACAAT...................................................................................2411.0040.00------------------------------------------------------------------------------------------------------1.00----------------
..............................................................................................................................................................................................................TGCCTTTCATCATCCTGACCCTGGTGA.................2711.001.00---------------------------------------------------------------------------1.00-------------------------------------------
........................................................................................................................................................................GAGAACCATGTGCCTTCCCCGGC...........................................................2311.001.00---------------------1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCATAAC...................................................................................2511.0011.00-----------------------------------------------------------------------------------------1.00-----------------------------
................................................................................................................................................AGGGGGGCTGGAATGGGC........................................................................................1811.001.00-----------------------------------------------------------------------------1.00-----------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGGGCATTAT...................................................................................2511.0011.00-------------------------1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................................................TGCCTTCCCCGGCCTCCCACACT.................................................2311.007.00-------------------------------------------------------------------------------1.00---------------------------------------
...............................................................................................................................................CAGGGGGGCTGGAATGGGCACTTT...................................................................................2411.00310.00------------1.00----------------------------------------------------------------------------------------------------------
.............................................................................................................................................AACAGGGGGGCTGGAATGGG.........................................................................................2020.500.50---0.50-------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................ACAGGGGGGCTGGAATGG..........................................................................................1820.500.500.50----------------------------------------------------------------------------------------------------------------------

Antisense strand
TGAAGAGGCAGCTCTAGGGAGCCCTGAAGTGAGGAGAGGCTATAGCTGGGTAGAGCTGCTGAGTAGTTGGGCTCATTCAAAGAAGCCAATGGAGTAGTTTCCAGTGAGGGCATGCACAGTGGCCATGATAGATGTGCAGATAACAGGGGGGCTGGAATGGGCACTGCGGAGAACCATGTGCCTTCCCCGGCCTCCCACAGCCTCTCTGCCTTTCATCATCCTGACCCTGGTGAATGCACCATATAAGCGG
.................................................................................................................................................((((((((((...((((((...((....))..))))))...))))))))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjLiverWT1()
Liver Data. (liver)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR685339(GSM1079783)
"Small RNAs (15-50 nts in length) from immort. (cell line)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (gland)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR394083(GSM855969)
"background strain: C57BL6/SV129cell type: KR. (cell line)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		mjLiverWT3()
Liver Data. (liver)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		mjTestesWT3()
Testes Data. (testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		mjTestesWT4()
Testes Data. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		GSM510444(GSM510444)
brain_rep5. (brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		GSM416732(GSM416732)
MEF. (cell line)		SRR065050(SRR065050)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)
.............................................................................................................................................................................................GCCTCCCACAGCCTCTCT........................................... 1834.004.00------0.330.67---------------0.67---------0.33----------------------------------1.330.33------------------------------------------------0.33
..............................................................................................................................................................................................CCTCCCACAGCCTCTCGCA......................................... 191.000.00----------------------------------------1.00------------------------------------------------------------------------------
...............................................................................................................................................................................................CTCCCACAGCCTCTCTCG......................................... 181.000.00----------------------------------------1.00------------------------------------------------------------------------------
.............................................................................................................................................................................................GCCTCCCACAGCCTCGG............................................ 171.000.00---------------------------------------------1.00-------------------------------------------------------------------------
....................................................................................................................................................................................................ACAGCCTCTCTGCCTAAGA................................... 191.000.00----------------------------------------1.00------------------------------------------------------------------------------
............................................................................................................................................................................................GGCCTCCCACAGCCTCAGG........................................... 191.000.00-----------------------------------------------------------------------------------------------------------1.00-----------
.............................................................................................................................................................................................GCCTCCCACAGCCTCTC............................................ 1770.570.57--------0.43--------------0.14-----------------------------------------------------------------------------------------------