ID: uc011mjk.1_intron_19_0_chrX_20227523_r.5p
GENE: (1)
chrX:20236718-20236967-


(3)
B-CELL 		(1)
BRAIN 		(8)
BREAST 		(22)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(9)
HEART 		(3)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(1)
OVARY 		(26)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTTTCGTAGCCATGTTTAAATTTTTGTCTTTTCGTGTTCGCTCTATACAGGTAAGCTCTGTTCAGCTTCTTTTATAGAATAAAATGTTTTAGTTGGAGCTAACTATAATTACAGTAATTAGTTATTTCGTTTTATATGTTCTTTAAAGCAGCTTTTCAAAATTCAAAACCTGTTTTGATAGAACTTTTAAAGGATAATAGCTCTGTTTACTAAAAGCCAGTTATGTGTATTATACATTTCAACTCTGTAT
....................................................................................(((..((((((....)))))).....))).......((((((...(((((...((((((((((((((.((((........)))).))))))))).)))))...)))))))))))....................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR029127(GSM416756)
A549. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR029129(GSM416758)
SW480. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM379265(GSM379265)
Small RNA from endometrioid ovarian cancer tissue. (ovary)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................................................ACTTTTAAAGGATAACAGA.................................................19132.000.00-1.0026.0015.001.0010.008.00-7.007.001.00-4.00-2.004.004.00--1.002.002.00---1.00-2.002.00--2.002.00-2.001.002.001.002.002.001.00-1.001.001.00-1.00----1.00-1.00---------1.001.001.001.001.00-1.001.00--1.001.00--1.00-1.00-----
......................................................................................................................................................................................ACTTTTAAAGGATAACATC.................................................1950.000.0039.006.00-----1.00--1.00-----------1.00-1.001.00-----------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAAAAG..................................................1828.000.00-8.00---1.00-2.001.00-2.003.00-3.00----1.00----1.00--1.00------1.00--------------1.00---1.00---1.00-1.00--------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACAA..................................................1817.000.00-9.00-----2.00---1.00-1.001.001.00----1.00-----------------------------1.00----------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACAGT.................................................1914.000.00----8.00--1.00----2.00--------------------------------1.00---------------1.00--------------1.00--------
......................................................................................................................................................................................ACTTTTAAAGGATAAAAGC.................................................197.000.00-1.00-----1.00--1.001.00-1.00---------1.00------------------------------------------------1.00------------
......................................................................................................................................................................................ACTTTTAAAGGATAACAAC.................................................196.000.00-2.00--------1.00--1.00-------------------1.00---------------------1.00-----------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAGCTAT..............................................2216.005.00-1.00-----------------1.00------1.00---2.00-----------------------1.00------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAGCT................................................2015.005.00----1.00------------1.00-1.00---------------------------------------1.00-----------1.00-------------
......................................................................................................................................................................................ACTTTTAAAGGATAACACC.................................................194.000.00-1.00---------1.00--1.00--1.00-------------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAG..................................................1824.004.00----1.50-----0.50---1.00--------------------------------------------------------------------0.500.50
......................................................................................................................................................................................ACTTTTAAAGGATAACCG..................................................184.000.00----1.00-----------------1.001.001.00------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACAC..................................................184.000.00------1.00---------1.00-1.00----------------------1.00-------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACAGG.................................................194.000.00---------1.00--------1.001.00-1.00---------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACCA..................................................183.000.00---------------------------------------------------------1.00-----------------1.00----1.00----
......................................................................................................................................................................................ACTTTTAAAGGATAACGG..................................................183.000.00-------1.00---------1.00-------1.00-----------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAGC.................................................1912.002.00-------1.00----------------1.00------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACGGC.................................................192.000.00--1.00-------1.00--------------------------------------------------------------------------
...........ATGTTTAAATTTTTGTCTTTTCGTG......................................................................................................................................................................................................................2511.001.00------------------------------------------------------------1.00------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACTG..................................................181.000.00-----------------------------------------1.00-------------------------------------------
.......................................................................................TTTAGTTGGAGCTAATC..................................................................................................................................................171.000.00-------------------------------------------------1.00-----------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATTGG.................................................191.000.00----------------------------------------1.00--------------------------------------------
....................................................................................................................................................................................GAACTTTTAAAGGATAACA...................................................191.000.00--------------------------------------------------------------------1.00----------------
......................................................................................................................................................................................ACTTTTAAAGGATAAAAAC.................................................191.000.00----------------------1.00--------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAGCTTT..............................................2211.005.00--------------------------------------------------------------1.00----------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACAAA.................................................191.000.00-------------------------------------1.00-----------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACGC..................................................181.000.00------------------1.00------------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACCGC.................................................191.000.00---------------------------------------------------------------------------------1.00---
......................................................................................................................................................................................ACTTTTAAAGGATAAGAGC.................................................191.000.00------------------------------------------------------------------------------1.00------
......................................................................................................................................................................................ACTTTTAAAGGATAACATG.................................................191.000.00-----------------------------------1.00-------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAAAAGA.................................................191.000.00-1.00-----------------------------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAGCTTTAC............................................2411.005.00-----------1.00-------------------------------------------------------------------------
..........................................................................................................................................................................TGTTTTGATAGAACTCTG..............................................................181.000.00--------------1.00----------------------------------------------------------------------
........................................................................................................................................................................................TTTTAAAGGATAATAGCT................................................1811.001.00-----------------1.00-------------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAGCTA...............................................2111.005.00-1.00-----------------------------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACATA.................................................191.000.00--1.00----------------------------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAACAAT.................................................191.000.00-1.00-----------------------------------------------------------------------------------
......................................................................................................................................................................................ACTTTTAAAGGATAATAGAT................................................2020.504.00----------------------------------------------------------------------------------0.50--
......................................................................................................................................................................................ACTTTTAAAGGATAATA...................................................1740.250.25------0.25------------------------------------------------------------------------------
.............GTTTAAATTTTTGTCTT............................................................................................................................................................................................................................1790.110.11--------------------------0.11----------------------------------------------------------

Antisense strand
GTTTCGTAGCCATGTTTAAATTTTTGTCTTTTCGTGTTCGCTCTATACAGGTAAGCTCTGTTCAGCTTCTTTTATAGAATAAAATGTTTTAGTTGGAGCTAACTATAATTACAGTAATTAGTTATTTCGTTTTATATGTTCTTTAAAGCAGCTTTTCAAAATTCAAAACCTGTTTTGATAGAACTTTTAAAGGATAATAGCTCTGTTTACTAAAAGCCAGTTATGTGTATTATACATTTCAACTCTGTAT
....................................................................................(((..((((((....)))))).....))).......((((((...(((((...((((((((((((((.((((........)))).))))))))).)))))...)))))))))))....................................................
..................................................................................83...................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR029127(GSM416756)
A549. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR029129(GSM416758)
SW480. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM379265(GSM379265)
Small RNA from endometrioid ovarian cancer tissue. (ovary)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................AAAGCAGCTTTTCAAAATG....................................................................................... 192.000.00-----------------------------2.00-------------------------------------------------------
..................................................................................................................................TTTATATGTTCTTTAGCAG..................................................................................................... 191.000.00--1.00----------------------------------------------------------------------------------
..................................................................................................................................................AGCAGCTTTTCAAAATTAAC.................................................................................... 201.000.00-----------------------------------------------1.00-------------------------------------