ID: uc011lha.1_intron_3_0_chr8_101601208_r.3p
GENE: (4)
chr8:101601158-101601407-


(1)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(1)
BREAST
(11)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(3)
SKIN

Sense strand
ACAGGCCCCTGCCACCACGCCTGGTTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGAACTCCTGACCTCAGGCGATCTGCCCGCCTCAGCTGGGATTTCAGGTGTGAGCCACCGTGCCCGGCAAATTAATAGGCATTTAAATTTACATTGAATATAAAATATTTTCCTTTGTAGGGAACTCTGCTGGATACGGATGGGCCCCAGAGAACTCTCAACCAGAACTT
..................................................(((((((.(((((.((....)).)))))...)))))))...(((.(((((.......)))))..((((((......((((.....))))...))))))........)))..........((((..((((((...)))))).....))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040009(GSM532894)
G727T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
.....................................................GTTTCACCATGTTGGCCAGGAAAAC............................................................................................................................................................................257.000.00--7.00-----------------------
..................................................................................AACTCCTGACCTCAGGCGATCTGCCTGG............................................................................................................................................285.000.002.003.00------------------------
..................................................................................AACTCCTGACCTCAGGCGATCTGCCTGGC...........................................................................................................................................293.000.002.001.00------------------------
....................................................................CCAGGATGGTCTCGAACAA...................................................................................................................................................................192.000.00--------2.00-----------------
..................................................................................AACTCCTGACCTCAGGCGATCTGCCCGCCTCCC.......................................................................................................................................332.000.001.001.00------------------------
.............................................................ATGTTGGCCAGGATGGTCTCGAACTCCTG................................................................................................................................................................2902.002.00---2.00----------------------
.................................................................TGGCCAGGATGGTCTCGACCCG...................................................................................................................................................................222.000.00-2.00------------------------
..................................................................................AACTCCTGACCTCAGGCGATCTGTG...............................................................................................................................................252.000.00-2.00------------------------
....................................................................................................................................................................................TAAAATATTTTCCTTTTATG..................................................201.000.00----1.00---------------------
..........................................................ACCATGTTGGCCAGGAGCGG............................................................................................................................................................................201.000.00------------1.00-------------
......................................................................AGGATGGTCTCGAACTC...................................................................................................................................................................1701.001.00------------------1.00-------
..................................................................................................CGATCTGCCCGCCTCAGCGTCC..................................................................................................................................221.000.00--------------------1.00-----
.........................................AGTAGAGATGGGGTTTCACCATGGCCC......................................................................................................................................................................................271.000.001.00-------------------------
..............................................................TGTTGGCCAGGATGGTCTCGACGTC...................................................................................................................................................................251.000.001.00-------------------------
............................................................CATGTTGGCCAGGATGGTGCCG........................................................................................................................................................................221.000.001.00-------------------------
...................................................................................ACTCCTGACCTCAGGCGATCTGCCCGCG...........................................................................................................................................281.000.001.00-------------------------
.............................................................ATGTTGGCCAGGATGGTCTCGCTAC....................................................................................................................................................................251.000.00-1.00------------------------
...................................................................................ACTCCTGACCTCAGGCGATCTGCCCGCCTCCC.......................................................................................................................................321.000.001.00-------------------------
.....................................................................CAGGATGGTCTCGAACTGACA................................................................................................................................................................211.000.00-----------1.00--------------
.....................................................................................TCCTGACCTCAGGCGATCTGTG...............................................................................................................................................221.000.00-1.00------------------------
................................................................TTGGCCAGGATGGTCTCGAACCTTG.................................................................................................................................................................251.000.00-1.00------------------------
.............................................................................TCTCGAACTCCTGACCTCAGGC.......................................................................................................................................................2201.001.00---------------------1.00----
..................................................................................AACTCCTGACCTCAGGCGATCTCCTG..............................................................................................................................................261.000.001.00-------------------------
.............................................................ATGTTGGCCAGGATGGTCCGAG.......................................................................................................................................................................221.000.00-1.00------------------------
...................................................................................ACTCCTGACCTCAGGCGATCTGCCCGCCC..........................................................................................................................................291.000.001.00-------------------------
......................................................................AGGATGGTCTCGAACTCCT.................................................................................................................................................................1901.001.00-------1.00------------------
..............................................................TGTTGGCCAGGATGGTCTCGAGCG....................................................................................................................................................................241.000.00-1.00------------------------
..................................................................................AACTCCTGACCTCAGGCGATCGCTC...............................................................................................................................................251.000.001.00-------------------------
................................................................TTGGCCAGGATGGTCTCGACCCT...................................................................................................................................................................231.000.001.00-------------------------
..AGGCCCCTGCCACCACGCCGGC..................................................................................................................................................................................................................................221.000.001.00-------------------------
.......................................................................................................................................................................................................GGGAACTCTGCTGGAGGT.................................181.000.00--------------1.00-----------
................................................................TTGGCCAGGATGGTCTCGAACTCCTAAG..............................................................................................................................................................281.000.00---------1.00----------------
..........................................................................................ACCTCAGGCGATCTGCCCGCCCC.........................................................................................................................................231.000.001.00-------------------------
..............................................................TGTTGGCCAGGATGGTCTCGACCCT...................................................................................................................................................................251.000.001.00-------------------------
...........CCACCACGCCTGGTTAACTTC..........................................................................................................................................................................................................................211.000.00---------1.00----------------
..........................................................ACCATGTTGGCCAGGATGGATA..........................................................................................................................................................................221.000.00----------------------1.00---
...................................................................................ACTCCTGACCTCAGGCGATCTGCCTCGG...........................................................................................................................................281.000.00-1.00------------------------
..........................................................ACCATGTTGGCCAGGATGGTCTCGACCTG...................................................................................................................................................................291.000.00-1.00------------------------
...................................................................................ACTCCTGACCTCAGGCGATCTGCAAT.............................................................................................................................................261.000.00-1.00------------------------
...................................................................................ACTCCTGACCTCAGGCGATCTGCCTGCA...........................................................................................................................................281.000.001.00-------------------------
..............................................................TGTTGGCCAGGATGGTCTCGAGAG....................................................................................................................................................................241.000.00-------------------------1.00
................................................................TTGGCCAGGATGGTCTCGAAAA....................................................................................................................................................................221.000.00------------------------1.00-
......................................................................AGGATGGTCTCGAACTCC..................................................................................................................................................................1801.001.00-------1.00------------------
.....................................................................................TCCTGACCTCAGGCGATCTGCCTGG............................................................................................................................................251.000.001.00-------------------------
..............................................................TGTTGGCCAGGATGGTAGAG........................................................................................................................................................................201.000.00------1.00-------------------
...................................................................................ACTCCTGACCTCAGGCGATCTGCCTGGC...........................................................................................................................................281.000.00-1.00------------------------
...............................................................................................AGGCGATCTGCCCGCG...........................................................................................................................................161.000.001.00-------------------------
.................................................................TGGCCAGGATGGTCTCGAACACG..................................................................................................................................................................231.000.00------1.00-------------------
...................................................................................ACTCCTGACCTCAGGCGATCTGCCTGTG...........................................................................................................................................281.000.001.00-------------------------
...........................................................................................................................TCAGGTGTGAGCCACCGTGCCCGACC.....................................................................................................261.000.001.00-------------------------
..................................................................................................................................................................................................TTGTAGGGAACTCTG.........................................1540.250.25----------0.25---------------
...................................................................................................................................................................................................................................CAGAGAACTCTCAAC........1570.140.14----------0.14---------------

Antisense strand
ACAGGCCCCTGCCACCACGCCTGGTTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCGAACTCCTGACCTCAGGCGATCTGCCCGCCTCAGCTGGGATTTCAGGTGTGAGCCACCGTGCCCGGCAAATTAATAGGCATTTAAATTTACATTGAATATAAAATATTTTCCTTTGTAGGGAACTCTGCTGGATACGGATGGGCCCCAGAGAACTCTCAACCAGAACTT
..................................................(((((((.(((((.((....)).)))))...)))))))...(((.(((((.......)))))..((((((......((((.....))))...))))))........)))..........((((..((((((...)))))).....))))...................................................
..................................................51...................................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189782GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR040009(GSM532894)
G727T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
...............................................................GTTGGCCAGGATGGTCTCGAAGG.................................................................................................................................................................... 233.000.003.00-------------------------
................................................................TTGGCCAGGATGGTCTCGGCTG.................................................................................................................................................................... 222.000.00-2.00------------------------
...................................................................................ACTCCTGACCTCAGGCGATCGG................................................................................................................................................. 221.000.001.00-------------------------
..............................................................................................................................GGTGTGAGCCACCGTGCCCGGCAGT................................................................................................... 251.000.001.00-------------------------
.............................................................ATGTTGGCCAGGATGGTCTCGATAC.................................................................................................................................................................... 251.000.00----1.00---------------------
.......................................................................GGATGGTCTCGAACTCCTGACCTCGTC........................................................................................................................................................ 271.000.00-1.00------------------------
.........................................................................................................................................CCGTGCCCGGCAAATAGGC.............................................................................................. 191.000.00-1.00------------------------
...................................................................................................GATCTGCCCGCCTCAGTCTG................................................................................................................................... 201.000.00----------1.00---------------
...............................................................GTTGGCCAGGATGGTCTTGCG...................................................................................................................................................................... 211.000.001.00-------------------------
.......CCTGCCACCACGCCTGGAGC............................................................................................................................................................................................................................... 201.000.00-----1.00--------------------
........................................................................................................GCCCGCCTCAGCTGGGGTC............................................................................................................................... 191.000.00---------------1.00----------
...................................................GGGTTTCACCATGTTGGCCAGGAGC.............................................................................................................................................................................. 251.000.001.00-------------------------
..............................................................................................................................GGTGTGAGCCACCGTGCCCGGCAACGC................................................................................................. 271.000.001.00-------------------------
......CCCTGCCACCACGCCTAAC................................................................................................................................................................................................................................. 191.000.00-1.00------------------------
.....................................................................................................................................GCCACCGTGCCCGGCAAATGTG............................................................................................... 221.000.00-1.00------------------------
...............................................................GTTGGCCAGGATGGTCTCGAAGGC................................................................................................................................................................... 241.000.001.00-------------------------
.............................................................................................................................................................GGCATTTAAATTTACACCT.......................................................................... 191.000.00----------------1.00---------
..............................................................TGTTGGCCAGGATGGTCTGCAG...................................................................................................................................................................... 221.000.00-1.00------------------------
..................................................................GGCCAGGATGGTCTCGAACTGACC................................................................................................................................................................ 241.000.00-1.00------------------------
...............................................................GTTGGCCAGGATGGTCTCGATTAC................................................................................................................................................................... 241.000.00----1.00---------------------
...................................................................................ACTCCTGACCTCAGGCAAA.................................................................................................................................................... 191.000.00-------------------1.00------
..............................................................................................CAGGCGATCTGCCCGCCGACC....................................................................................................................................... 211.000.00-----------------------1.00--
..................................................................GGCCAGGATGGTCTCGAACTCCTGGCA............................................................................................................................................................. 271.000.00-------------1.00------------
...........................................................CCATGTTGGCCAGGATGGTGG.......................................................................................................................................................................... 211.000.00---1.00----------------------
...............................................................................................................................GTGTGAGCCACCGTGCCCGGCGCGC.................................................................................................. 251.000.001.00-------------------------
........................................................................................................GCCCGCCTCAGCTGGGTC................................................................................................................................ 181.000.00-----------------1.00--------
.....................................................................................................................................GCCACCGTGCCCGGCAACCAC................................................................................................ 211.000.00-1.00------------------------