ID: uc011caz.1_intron_3_0_chr4_71691963_r.5p
GENE: GRSF1(6)
chr4:71693369-71693618-


(1)
AGO1.ip
(2)
AGO2.ip
(1)
AGO3.ip
(4)
B-CELL
(4)
BREAST
(20)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(4)
HEART
(4)
HELA
(2)
LIVER
(2)
OTHER
(1)
RRP40.ip
(6)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AAATGAGGATATTCAACCCATGACAGCTTTTGAAAGTGAGAAGGAAATAGGTAAGGTCCTGCCTCTTCTTGAGACTCATTGGGTCTATCTTGAATGTTTTGGGTTTTGTGATTTTTTTTTTTTTGAGATGAAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTGACTGCAGCCTCTACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCTTTGAGTAGCTGGGACTACAGG
...................................................................................................................................(((((.((......)).))))).((((.(((.((((.((....(((((....)))))))))))..))).))))..............................................
................................................................................................................................129..........................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189783TAX577739(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTGG...............................................................................................22021.0021.00--8.00-4.004.00--4.00----------1.00-----------------------------------
.............................................................................................................................................TGTTGCCAGGCTGGAGTGCAGAA......................................................................................237.000.00------7.00------------------------------------------------
..................................AGTGAGAAGGAAATAGAATT....................................................................................................................................................................................................206.000.00----------4.00---------2.00----------------------------------
.......................................................................................................................................TCGCTCTGTTGCCAGGCTGGAGTGCAGCGTC....................................................................................314.000.004.00------------------------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTG................................................................................................2104.004.00--1.00-1.002.00-------------------------------------------------
........ATATTCAACCCATGACAGCTTTTG..........................................................................................................................................................................................................................2414.004.00---------1.00-----------2.00---1.00-----------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTGGTT.............................................................................................2403.0021.00-----------1.00--------------1.00----------1.00-----------------
......................ACAGCTTTTGAAAGTGAGAAGG..............................................................................................................................................................................................................2213.003.00-----------3.00-------------------------------------------
............................................................................................................................................................GTGCAGTGGTGCGATCTCGGT.........................................................................212.000.00--2.00----------------------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCAA................................................................................................2102.002.00----------------------------1.00-1.00------------------------
...........TTCAACCCATGACAGCTTTTGAAAGCG....................................................................................................................................................................................................................272.000.00-2.00-----------------------------------------------------
.............................TTGAAAGTGAGAAGGAAATAGAAT.....................................................................................................................................................................................................242.000.00-------1.00---------------------------------------1.00-------
........ATATTCAACCCATGACAGCTTTTGAAAG......................................................................................................................................................................................................................2812.002.00-----------------2.00-------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGC..................................................................................................1902.002.00----1.00---1.00----------------------------------------------
........ATATTCAACCCATGACAGCTTTT...........................................................................................................................................................................................................................2312.002.00---------2.00---------------------------------------------
....................TGACAGCTTTTGAAAGTGAGAAGGAAATAGAATT....................................................................................................................................................................................................342.000.00----------------2.00--------------------------------------
.................................AAGTGAGAAGGAAATAG........................................................................................................................................................................................................1722.002.00--------------2.00----------------------------------------
................................................................................................................................................................AGTGGTGCGATCTCGGAAA.......................................................................191.000.00----------------------1.00--------------------------------
..............................................................................................................................................................GCAGTGGTGCGATCTCGGTTCT......................................................................221.000.00------------------1.00------------------------------------
...............................................................................................................................................TTGCCAGGCTGGAGTGCAGTGGTGGCAC...............................................................................281.000.001.00------------------------------------------------------
......................................................................................................................................CTCGCTCTGTTGCCAGGCTAG...............................................................................................211.000.00----1.00--------------------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTTGG..............................................................................................2301.001.001.00------------------------------------------------------
.........TATTCAACCCATGACAGCTTTTG..........................................................................................................................................................................................................................2311.001.00------------------------1.00------------------------------
.................................................................TTCTTGAGACTCATTGGG.......................................................................................................................................................................1811.001.00----------1.00--------------------------------------------
..............................................................................................................ATTTTTTTTTTTTTGAGCGGG.......................................................................................................................211.000.001.00------------------------------------------------------
...................................................................................................................................................................................ACTGCAGCCTCTACCTCCTTGTC................................................231.000.001.00------------------------------------------------------
........................................................................................................................TTTTGAGATGAAGTCTCGCTCTGAC.........................................................................................................251.000.00-1.00-----------------------------------------------------
....................TGACAGCTTTTGAAAGTGAGAAGG..............................................................................................................................................................................................................2411.001.00---------------------------------------1.00---------------
..............................TGAAAGTGAGAAGGAAATAGAA......................................................................................................................................................................................................2211.001.00-------1.00-----------------------------------------------
......................................................................................................................................................................................GCAGCCTCTACCTCCTGGGAAG..............................................221.000.00-----1.00-------------------------------------------------
......................ACAGCTTTTGAAAGTGAGAAGGAAATAG........................................................................................................................................................................................................2811.001.00-----------1.00-------------------------------------------
..........................................................................................................................................CTCTGTTGCCAGGCTGGACGGC..........................................................................................221.000.001.00------------------------------------------------------
..........................................................................................................TGTGATTTTTTTTTTTTTGAGATAG.......................................................................................................................251.000.001.00------------------------------------------------------
..........................................................................................................TGTGATTTTTTTTTTTTTGGCC..........................................................................................................................221.000.00-1.00-----------------------------------------------------
.............................................................................................................................................TGTTGCCAGGCTGGAGTGCAGAAAA....................................................................................251.000.00------------------------------------1.00------------------
...............................................................................................................................................................CAGTGGTGCGATCTCGGCTGATCGC..................................................................251.000.001.00------------------------------------------------------
.......................................................................................................................................................CTGGAGTGCAGTGGTGCGATCTCGGCAATG.....................................................................301.000.00-------------------------------------------------1.00-----
........ATATTCAACCCATGACAGCTTTTGAAA.......................................................................................................................................................................................................................2711.001.00---------1.00---------------------------------------------
.........................GCTTTTGAAAGTGAGAAGGAAATA.........................................................................................................................................................................................................2411.001.00------------1.00------------------------------------------
.......................................................................................................TTTTGTGATTTTTTTTTTTTGGGC...........................................................................................................................241.000.001.00------------------------------------------------------
........................................................................................................TTTGTGATTTTTTTTTTTTGGTA...........................................................................................................................231.000.00-1.00-----------------------------------------------------
..........ATTCAACCCATGACAGCTTTTGAAAGTGAG..................................................................................................................................................................................................................3011.001.00------------------------------------------1.00------------
........................AGCTTTTGAAAGTGAGAAGGAAATAG........................................................................................................................................................................................................2611.001.00--------------------------------------------1.00----------
........................................................................................................................................................................................................GTTCAAGTGATTCTCCTGCCTAAAA.........................251.000.00--------------------------------------1.00----------------
..................................AGTGAGAAGGAAATAGAAT.....................................................................................................................................................................................................191.000.00---------------------------------1.00---------------------
..........ATTCAACCCATGACAGCTTTTGAAAG......................................................................................................................................................................................................................2611.001.00-1.00-----------------------------------------------------
...............................................................................................................................................TTGCCAGGCTGGAGTGCAGTGGTGGACG...............................................................................281.000.001.00------------------------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTGTT..............................................................................................2301.004.00---------1.00---------------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTAT...............................................................................................2201.001.00---------------------------1.00---------------------------
.....................................................................................................GGTTTTGTGATTTTTTTTTTTTGAGA...........................................................................................................................261.000.00-1.00-----------------------------------------------------
...............................................................................................................................................................................................................TGATTCTCCTGCCTCAGCCTCTAT...................241.000.00----------------------------------------1.00--------------
..............................TGAAAGTGAGAAGGAAATAG........................................................................................................................................................................................................2011.001.00---------------------------------------------1.00---------
............................................................................................................................................................GTGCAGTGGTGCGATCTCGGA.........................................................................211.000.00--------1.00----------------------------------------------
..............................................................................................................................................................GCAGTGGTGCGATCTCGGCTAGA.....................................................................231.000.00-----------------------------------------1.00-------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTGTTA.............................................................................................2401.004.00------------------------------------------------1.00------
...........TTCAACCCATGACAGCTTT............................................................................................................................................................................................................................1911.001.00--------------------------------1.00----------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTATG..............................................................................................2301.001.00-----------------------------1.00-------------------------
........ATATTCAACCCATGACAGCTTTCG..........................................................................................................................................................................................................................241.000.00-------------1.00-----------------------------------------
................................................................................................................................................TGCCAGGCTGGAGTGCAGAGGG....................................................................................221.000.001.00------------------------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCAAA...............................................................................................2201.002.00---------------1.00---------------------------------------
......................ACAGCTTTTGAAAGTGAGAAGGA.............................................................................................................................................................................................................2311.001.00-------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................TTGAGTAGCTGGGACTACAGGGGG241.000.00-1.00-----------------------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCTAAGA.............................................................................................2401.001.00-------------------------------------------1.00-----------
...........................................................................................................................................................................................................CAAGTGATTCTCCTGCCTAAAA.........................221.000.00---------------1.00---------------------------------------
.....................................................................................................................................TCTCGCTCTGTTGCCAGGCT.................................................................................................2001.001.00----------------------------------1.00--------------------
.......................................................GTCCTGCCTCTTCTTCTTT................................................................................................................................................................................191.000.00-----------------------------------1.00-------------------
........................................................................................................TTTGTGATTTTTTTTTTTTTGA............................................................................................................................2290.220.220.22------------------------------------------------------
.......................................................................................................TTTTGTGATTTTTTTTTTTTTGA............................................................................................................................2350.200.200.20------------------------------------------------------
...............................GAAAGTGAGAAGGAAATA.........................................................................................................................................................................................................1850.200.20------------0.20------------------------------------------
.....................................................................................................................................................................TGCGATCTCGGCTGACTGCAGCC..............................................................2370.140.14--------------------------------------------------0.14----
.................................................................................................................................................................................TGACTGCAGCCTCTACCTCCTG...................................................2280.120.12---------------------------------------------------0.12---
..................CATGACAGCTTTTGA.........................................................................................................................................................................................................................1580.120.12----------------------------------------------------0.12--

Antisense strand
AAATGAGGATATTCAACCCATGACAGCTTTTGAAAGTGAGAAGGAAATAGGTAAGGTCCTGCCTCTTCTTGAGACTCATTGGGTCTATCTTGAATGTTTTGGGTTTTGTGATTTTTTTTTTTTTGAGATGAAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTGACTGCAGCCTCTACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCTTTGAGTAGCTGGGACTACAGG
...................................................................................................................................(((((.((......)).))))).((((.(((.((((.((....(((((....)))))))))))..))).))))..............................................
................................................................................................................................129..........................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189783TAX577739(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR343335SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
.......................................................................................................................................................................................CAGCCTCTACCTCCTGGGTTAAA............................................ 238.000.00---8.00---------------------------------------------------
........................................................................................................................................................................................AGCCTCTACCTCCTGGGTTCAAG........................................... 232.000.002.00------------------------------------------------------
....................................................................................................................................................................................CTGCAGCCTCTACCTCCTGGGTTAAAA........................................... 272.000.00-------2.00-----------------------------------------------
...................................................................................................................................AGTCTCGCTCTGTTGCCAGGCGTA............................................................................................... 242.000.00-------2.00-----------------------------------------------
................................................................................................................................................................................................................GATTCTCCTGCCTCAGCCTCTTCCC................. 252.000.002.00------------------------------------------------------
....................................................................................................................................................................................AACCCAGGAGGTAGAGGCTGCAG............................................... 2301.001.00----1.00--------------------------------------------------
.......................................................................................................................................................................................CAGCCTCTACCTCCTGGGTTCATAGC......................................... 261.000.001.00------------------------------------------------------
................................................................................................................................................TGCCAGGCTGGAGTGCAGTGTGC................................................................................... 231.000.00----------------------------------------------1.00--------
.........................................................................................................................................................................................................TTCAAGTGATTCTCCTGCCTCAGCCTCTAA................... 301.000.00------------1.00------------------------------------------
.....................................................................................................................................................................................................................TCCTGCCTCAGCCTCTTAAAG................ 211.000.00-------1.00-----------------------------------------------
.....................................................................................................................................................................................TGCAGCCTCTACCTCCTGGGTTAG............................................. 241.000.00------------------1.00------------------------------------
....................................................................................................................................GTCTCGCTCTGTTGCCAGGCTGGAGTCGTC........................................................................................ 301.000.00-1.00-----------------------------------------------------
......................................................................................................................................................GCTGGAGTGCAGTGGTGCGATCTCGGCTACCC.................................................................... 321.000.001.00------------------------------------------------------
........................................................................................................................................................................................AGCCTCTACCTCCTGGGTTTTAA........................................... 231.000.00---1.00---------------------------------------------------
.........................................................................................................................................................................................GCCTCTACCTCCTGGGTTCAAGTCGC....................................... 261.000.00-1.00-----------------------------------------------------
..............................................................................................................................GATGAAGTCTCGCTCTGAAT........................................................................................................ 201.000.00-----------------------1.00-------------------------------
.....................................................................................................................................................................................AACCCAGGAGGTAGAGGCTGCA............................................... 2201.001.00-------------------1.00-----------------------------------
....................................................................................................................................GTCTCGCTCTGTTGCCAGGCTGGAGTCCCT........................................................................................ 301.000.00-1.00-----------------------------------------------------
....................................TGAGAAGGAAATAGGATC.................................................................................................................................................................................................... 181.000.00-------------1.00-----------------------------------------
...........................................................................................................................................................................................CTCTACCTCCTGGGTTCAAGTGACTGC.................................... 271.000.00-1.00-----------------------------------------------------
......................................................................................................................................................................................AACCCAGGAGGTAGAGGCTGC............................................... 2101.001.00---1.00---------------------------------------------------
.......................................................................................................................................................................................CAGCCTCTACCTCCTGGGTGG.............................................. 211.000.00----------------------1.00--------------------------------
.........................................................................................................................................................................................GCCTCTACCTCCTGGGTTCAAGTAGC....................................... 261.000.001.00------------------------------------------------------
.................................................................................................................................................................................CAGGAGGTAGAGGCTGCAGTCA................................................... 2280.120.12-----------------------------------------------------0.12-
......ATGGGTTGAATATCC..................................................................................................................................................................................................................................... 1590.110.11------------------------------------------------------0.11