ID: uc011bui.1_intron_0_0_chr3_197476522_f.3p
GENE: FYTTD1(1)
chr3:197482341-197482590+


(1)
AGO1.ip
(2)
B-CELL
(2)
BRAIN
(1)
BREAST
(25)
CELL-LINE
(2)
CERVIX
(1)
HEART
(5)
LIVER
(1)
OTHER
(4)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
GAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCCGAGTTCAACCAATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCGCCATACCCGGCTAATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGTATTTTTAGTAGAGACGGGATTTCACCATGTTGGTCAGGCCAGTCCCGAACTCCTGACC
........................................................................................................((((((((......(((.......)))...))))))))............................................................................................................
.......................................................................................................104.............................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189786GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
.............................................................................................................................................................TATTTATTTATTTATTTATTTATTTATTTATCAG...........................................................3416.000.008.004.00--4.00-----------------------------------------
......................................................................................................................................................ATTTATTTATTTATTTATTTATTTATTTATCAG...................................................................3315.000.005.00----5.005.00---------------------------------------
......................................................................................................................................................................ATTTATTTATTTATTTATTTATCATG..........................................................2614.000.007.00---7.00-----------------------------------------
...............................................................................................................................................................TTTATTTATTTATTTATTTATTTATTTATCTCG..........................................................3310.000.0010.00---------------------------------------------
...............................................................................................................................................................TTTATTTATTTATTTATTTATTTATTTATCCG...........................................................3210.000.00-10.00--------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTTTAG............................................................................359.000.001.005.00--1.002.00----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTATCG............................................................................337.000.001.006.00--------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTAG..................................................................................297.000.002.002.00---3.00----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTAG..............................................................................336.000.003.003.00--------------------------------------------
......................................................................................................................................................ATTTATTTATTTATTTATTTATTTATCTCG......................................................................306.000.00-----6.00----------------------------------------
...................................................................................................................................................................TTTATTTATTTATTTATTTATTTATCTGC..........................................................296.000.00---6.00------------------------------------------
................................................................................................................................................................TTATTTATTTATTTATTTATTTATCATG..............................................................286.000.006.00---------------------------------------------
..........................................................................................................................................................ATTTATTTATTTATTTATTTATTTATCTGC..................................................................306.000.00--6.00-------------------------------------------
............................................................................................................................................................TTATTTATTTATTTATTTATTTATCTCG..................................................................286.000.006.00---------------------------------------------
..................................................................................................................................................................ATTTATTTATTTATTTATTTATTTATCGGT..........................................................306.000.00---6.00------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATCG................................................................................295.000.002.00---1.002.00----------------------------------------
..............................................................................................................................................................ATTTATTTATTTATTTATTTATTTATTTATCCTG..........................................................345.000.005.00---------------------------------------------
.........................................................................................................................................................TATTTATTTATTTATTTATTTATTTATCTGC..................................................................315.000.00---5.00------------------------------------------
..............................................................................................................................................................ATTTATTTATTTATTTATTTATTTATTTATCCG...........................................................335.000.00-5.00--------------------------------------------
..........................................................................................................................................................ATTTATTTATTTATTTATTTATTTATTTATCCC...............................................................335.000.005.00---------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTCTAG................................................................................315.000.001.00---4.00-----------------------------------------
............................TGCAGTGGTGCGATCTTGGAAT........................................................................................................................................................................................................224.000.00-------4.00--------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTTCG.............................................................................324.000.001.00---2.001.00----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTCTG.............................................................................324.000.002.001.00--1.00-----------------------------------------
............................................................................................................................................................TTATTTATTTATTTATTTATTTATTTATTTATCAG...........................................................354.000.004.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTATG..............................................................................313.000.00-2.00--1.00-----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTATG.............................................................................343.000.00-2.00--1.00-----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATCTAG..............................................................................313.000.002.00---1.00-----------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATCTTT......................................................................................243.000.003.00---------------------------------------------
...............................................................................................................................................................................................TATTTTTAGTAGAGACGGGATTTGC..................................252.000.00--2.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTAG...................................................................................282.000.00----1.001.00----------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACCATG.......................................252.000.00--1.001.00------------------------------------------
..............................................................................................................................................................................................GTATTTTTAGTAGAGACGGGATTTCT..................................262.000.00--------2.00-------------------------------------
........................................ATCTTGGCTCACTGCAACCTCTGCCTAGGC....................................................................................................................................................................................302.000.00---2.00------------------------------------------
.......................TGGAGTGCAGTGGTGCGATCTTGGCTCCCGG....................................................................................................................................................................................................312.000.00-------------------------------1.00--1.00-----------
.............................................................................................................................................AATTTATTTATTTATTTATCTCT......................................................................................232.000.00----2.00-----------------------------------------
.............................GCAGTGGTGCGATCTTGGCTAAAA.....................................................................................................................................................................................................242.000.00---------2.00------------------------------------
..........................AGTGCAGTGGTGCGATCTTGGCTCAGCGC...................................................................................................................................................................................................292.000.00---2.00------------------------------------------
............................................TGGCTCACTGCAACCTCTGCCTCCCGAGGCG...............................................................................................................................................................................312.000.00---2.00------------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTTATTCTG..............................................................................322.000.002.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTCTTG....................................................................................252.000.001.001.00--------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGGAG......................................262.000.00--2.00-------------------------------------------
................................................................................................................................................................................................ATTTTTAGTAGAGACGGGATTTGCC.................................252.000.00--2.00-------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGACCG.....................................272.000.00---2.00------------------------------------------
..................................................................................................................................................................................................TTTTAGTAGAGACGGGATTTCCC.................................231.000.00------------1.00---------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGCAGG.........................................231.000.00---1.00------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTATC.............................................................................341.000.00----1.00-----------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGTGGG......................................261.000.00--1.00-------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTACAG................................................................................291.000.001.00---------------------------------------------
......................................................................................................................................................................................................................CACCATGTTGGTCAGGCCTCG...............211.000.00---1.00------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTCTAG........................................................................................231.000.001.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTATTGATT.........................................................................361.000.00-1.00--------------------------------------------
........................................ATCTTGGCTCACTGCAACCTCTGCCTAGGT....................................................................................................................................................................................301.000.00---1.00------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTGAAG....................................................................................251.000.00-1.00--------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGGCTTC....................................281.000.00--1.00-------------------------------------------
................................................................................................................................................................................................ATTTTTAGTAGAGACGGGATTTGCT.................................251.000.00---1.00------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTTAAG................................................................................311.000.00-1.00--------------------------------------------
..........................................................................................................................................................................ATTTATTTATTTATTTATTTGTATTTTTAGC.................................................311.000.00---1.00------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTACT.............................................................................341.000.001.00---------------------------------------------
.................................................................................................................................................................................................TTTTTAGTAGAGACGGGATTTGCT.................................241.000.00---1.00------------------------------------------
..........................AGTGCAGTGGTGCGATCTTGGCTCAGCG....................................................................................................................................................................................................281.000.00--1.00-------------------------------------------
........................................................................................................................................................................................................TAGAGACGGGATTTCACGACG.............................211.000.00---------------------------------------------1.00
...........................................................................................................................................CTAATTTATTTATTTATTTATTTTCTG....................................................................................271.000.00-----1.00----------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGAGGGC........................................241.000.00--1.00-------------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTTATTTCTAG............................................................................341.000.001.00---------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGGTGTC....................................281.000.00---1.00------------------------------------------
....................................................................................................................................................................................................TTAGTAGAGACGGGATGAA...................................191.000.00--------------------------1.00-------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTTTAA................................................................................311.000.00-1.00--------------------------------------------
............................TGCAGTGGTGCGATCTTGGCTCAGCGC...................................................................................................................................................................................................271.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTCCG.........................................................................................221.000.00----1.00-----------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTCATG.................................................................................291.000.001.00---------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGAGGC......................................261.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTCTTG................................................................................311.000.00----1.00-----------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTTATTATTG.............................................................................331.000.00-1.00--------------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTTATTCATG.............................................................................331.000.001.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATCTTG......................................................................................231.000.001.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATCCTG..............................................................................311.000.001.00---------------------------------------------
............................................TGGCTCACTGCAACCTCTGCCTAAA.....................................................................................................................................................................................251.000.00-----------1.00----------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTAAT.................................................................................301.000.00-1.00--------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGAGCT.....................................271.000.00---1.00------------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTCCG.........................................................................................211.000.001.00---------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTTCAG................................................................................311.000.00----1.00-----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTATTAG...........................................................................341.000.00-----1.00----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTAATTG...........................................................................341.000.00-----1.00----------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGAGTC.....................................271.000.00--1.00-------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGAGGGT........................................241.000.00--1.00-------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTCTCG....................................................................................251.000.00-----1.00----------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGAGC.......................................251.000.00---1.00------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGTTCC.....................................271.000.00--1.00-------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGGTG......................................261.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTCTTG............................................................................351.000.00----1.00-----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTCG..................................................................................271.000.00-1.00--------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTCCTG........................................................................................211.000.00----1.00-----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTACTTT...............................................................................321.000.00-1.00--------------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTACG.....................................................................................251.000.00----1.00-----------------------------------------
.................................................................................................................................CCATACCCGGCTAATTTATTTATTTATTTATTTG.......................................................................................341.000.00-----1.00----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTACAG....................................................................................251.000.00----1.00-----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATCTAG..................................................................................271.000.001.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTCAG..................................................................................271.000.001.00---------------------------------------------
...................................................................................................................................................................................................................TTTCACCATGTTGGTCAGGCCGCC...............241.000.00--1.00-------------------------------------------
....................................................................................................................................................................................................................TTCACCATGTTGGTCAGGCCGTCT..............241.000.00------------------------1.00---------------------
............................................................................................................TGGGATTACAGGCATGCACCTAAT......................................................................................................................241.000.00---------------------------1.00------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTCTG..................................................................................271.000.00----1.00-----------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTTATTTATA.............................................................................331.000.00-----1.00----------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACCACC.......................................251.000.00--1.00-------------------------------------------
........................................................................................................................................................................................................TAGAGACGGGATTTCAATA...............................191.000.00----------1.00-----------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTCG...................................................................................271.000.00-----1.00----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTCTC......................................................................................231.000.00----1.00-----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTTCG.....................................................................................261.000.00----1.00-----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTAATG........................................................................................231.000.00-----1.00----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATCTAT..........................................................................................211.000.001.00---------------------------------------------
................................................................................................................................................................................................ATTTTTAGTAGAGACGGGATTTCACCCAG.............................291.000.00--1.00-------------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTTATAG................................................................................301.000.001.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTACG.................................................................................281.000.00----1.00-----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTCAG.....................................................................................261.000.001.00---------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTTTA.............................................................................341.000.00-1.00--------------------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGAGA......................................261.000.00--1.00-------------------------------------------
......................................................................................................................................................................................................AGTAGAGACGGGATTAATG.................................191.000.00--1.00-------------------------------------------
.....................................................................................TCTGCCTCAGCCTCCCGAGTAGCCCGG..........................................................................................................................................271.000.00---1.00------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTATCATG..........................................................................351.000.00----1.00-----------------------------------------
.....................................................................................................................................................................................................................TCACCATGTTGGTCAGGCCGTTG..............231.000.00--1.00-------------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATTTCTTT................................................................................301.000.00-----1.00----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTCTAG.....................................................................................261.000.001.00---------------------------------------------
.....................................................................................................................................................................................................TAGTAGAGACGGGATTATA..................................191.000.00-------------------------------------------1.00--
.........................................................................................................................................................................................................AGAGACGGGATTTCACCATGCGG..........................231.000.00--1.00-------------------------------------------
...............................................................................................................................................................................................TATTTTTAGTAGAGACGGGATTCCGG.................................261.000.00--1.00-------------------------------------------
............................................TGGCTCACTGCAACCTCTGCCTCGACG...................................................................................................................................................................................271.000.00--1.00-------------------------------------------
..............................................................................................................................................................................ATTTATTTATTTATTTGTAGGT......................................................221.000.00---1.00------------------------------------------
............................................TGGCTCACTGCAACCTCTGCCTAGG.....................................................................................................................................................................................251.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATGTG...................................................................................281.000.001.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATCTG...............................................................................301.000.00----1.00-----------------------------------------
................................................................................................................ATTACAGGCATGCACCGGCG......................................................................................................................201.000.00---1.00------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTCTTG.............................................................................341.000.001.00---------------------------------------------
........................................................................................................TAGCTGGGATTACAGGCATGCTACG.........................................................................................................................251.000.00---1.00------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATACAG......................................................................................251.000.00-1.00--------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTATTCAG..........................................................................351.000.00----1.00-----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATCCT...................................................................................261.000.00---1.00------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTGG..............................................................................311.000.00-1.00--------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTCTTG.....................................................................................241.000.00----1.00-----------------------------------------
............................................................................................................................................TAATTTATTTATTTATTTATTTATCG....................................................................................261.000.00-1.00--------------------------------------------
..................................................................................................................................................................................................TTTTAGTAGAGACGGGATTTCACCA...............................2501.001.00---------------1.00------------------------------
......................................................................................................................................................................................................AGTAGAGACGGGATTTCACCATGTTGCAC.......................291.000.00---1.00------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTATTG.............................................................................321.000.00-----1.00----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTAATG....................................................................................271.000.00----1.00-----------------------------------------
..................................GGTGCGATCTTGGCTAAGA.....................................................................................................................................................................................................191.000.00---------1.00------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTATAG.................................................................................281.000.001.00---------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTAATG.............................................................................321.000.00-----1.00----------------------------------------
............................................TGGCTCACTGCAACCTCTGCCTAGGT....................................................................................................................................................................................261.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTCCT.................................................................................301.000.001.00---------------------------------------------
.................................................................................TTCTTCTGCCTCAGCCTCGGAG...................................................................................................................................................221.000.00---1.00------------------------------------------
......................................................................................................................................CCCGGCTAATTTATTTATTTATAGAG..........................................................................................261.000.00---1.00------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTAATG................................................................................311.000.00-----1.00----------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTTTCT................................................................................311.000.00-1.00--------------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATTTATTTATTACC..........................................................................351.000.00-1.00--------------------------------------------
.............................................GGCTCACTGCAACCTCTGCCTCCCGAAC.................................................................................................................................................................................281.000.00----------1.00-----------------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGGTC......................................261.000.00---1.00------------------------------------------
...................................................................................................................................................................................................TTTAGTAGAGACGGGATTTCT..................................211.000.00-----------------1.00----------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGCT.......................................251.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTACTTT...................................................................................281.000.001.00---------------------------------------------
.................................................................................................................................................................................................TTTTTAGTAGAGACGGGATTTGCC.................................241.000.00--1.00-------------------------------------------
...............................................................................AATTCTTCTGCCTCAGCCTCCCGCC..................................................................................................................................................251.000.00--1.00-------------------------------------------
.....................................................................................................................................................................................................................TCACCATGTTGGTCAGGCCTCGG..............231.000.00-------------------1.00--------------------------
................................................................................................................................................................................................ATTTTTAGTAGAGACGGGATCACC..................................241.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATCTTG..............................................................................331.000.00----1.00-----------------------------------------
.............................................................................................................................................AATTTATTTATTTATTTATTTATCG....................................................................................251.000.00----1.00-----------------------------------------
...............................................................................................................................................................................................TATTTTTAGTAGAGACGGGATTCTGG.................................261.000.00--1.00-------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTATTTTTCT............................................................................351.000.00-1.00--------------------------------------------
...........................................................................................................................................CTAATTTATTTATTTATTTATTTATTTTCG.................................................................................301.000.00----1.00-----------------------------------------

Antisense strand
GAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGCCTCCCGAGTTCAACCAATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCGCCATACCCGGCTAATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGTATTTTTAGTAGAGACGGGATTTCACCATGTTGGTCAGGCCAGTCCCGAACTCCTGACC
........................................................................................................((((((((......(((.......)))...))))))))............................................................................................................
.......................................................................................................104.............................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189786GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR040019(GSM532904)
G701T. (cervix)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
...............................................................................AATTCTTCTGCCTCAGCCTCCCGCTG................................................................................................................................................. 262.000.00----------------1.00---------------------1.00-------
..............................................................................CAATTCTTCTGCCTCAGCCTCCAAAA.................................................................................................................................................. 262.000.00-------------2.00--------------------------------
..........................................................................CAACCAATTCTTCTGGACC............................................................................................................................................................. 192.000.00----------1.00-------------------------1.00---------
.........................GAGTGCAGTGGTGCGATCTTGGC.......................................................................................................................................................................................................... 232.000.00--------------2.00-------------------------------
.....................................................................................TCTGCCTCAGCCTCCCGAGTCTGC............................................................................................................................................. 242.000.00--2.00-------------------------------------------
........................................................ACCTCTGCCTCCCGAGTTGGTG............................................................................................................................................................................ 222.000.00--2.00-------------------------------------------
......................................................................................................................................................................................................ATGGTGAAATCCCGTCTCTACT.............................. 2201.001.00-----------------------------1.00----------------
..............................................................................CAATTCTTCTGCCTCAGCCTCCAAAG.................................................................................................................................................. 261.000.00---------------------------------------1.00------
..................................GGTGCGATCTTGGCTCACTGT................................................................................................................................................................................................... 211.000.00------------1.00---------------------------------
...................................................................................................................................................................................................................................AGGAGTTCGGGACTGGCCT.... 1911.001.00---------------------1.00------------------------
..........................................................................................................................................................................................ATTTGTATTTTTAGTAGAGACGGCTAC..................................... 271.000.00----------------------------1.00-----------------
........................................................ACCTCTGCCTCCCGAGTGCGG............................................................................................................................................................................. 211.000.00--1.00-------------------------------------------
.........................................................CCTCTGCCTCCCGAGTTCACA............................................................................................................................................................................ 211.000.00-----------1.00----------------------------------
................................................TCACTGCAACCTCTGCCTCCCGAGTT................................................................................................................................................................................ 261.000.00------------------------------1.00---------------
......................................................CAACCTCTGCCTCCCGAGTTCGG............................................................................................................................................................................. 231.000.00--------------------------------------------1.00-
.................................................................................TTCTTCTGCCTCAGCCTCCCGAGTAA............................................................................................................................................... 261.000.00--------------------------------1.00-------------
.................................................................................TTCTTCTGCCTCAGCCTCCCGAGTACAA............................................................................................................................................. 281.000.00--1.00-------------------------------------------
...................................................GAACTCGGGAGGCAGAGGTTGCAG............................................................................................................................................................................... 2401.001.00---------------1.00------------------------------
...........................................................TTGAACTCGGGAGGCAGA............................................................................................................................................................................. 1801.001.00--------------------1.00-------------------------
..........................................................GAACTCGGGAGGCAGAG............................................................................................................................................................................... 1701.001.00--------1.00-------------------------------------
.....................................................GCAACCTCTGCCTCCCGAGTGGC.............................................................................................................................................................................. 231.000.00---1.00------------------------------------------
..................................................................................................CCCGAGTAGCTGGGATTACAGGCGT............................................................................................................................... 251.000.00----------------------1.00-----------------------
.................................................................................TTCTTCTGCCTCAGCCTCCCGAGTAGCTGG........................................................................................................................................... 301.000.00--1.00-------------------------------------------
.....................................................GCAACCTCTGCCTCCCGAGTTGGCG............................................................................................................................................................................ 251.000.00---1.00------------------------------------------
.................................................................................TTCTTCTGCCTCAGCCTCCCGAGAA................................................................................................................................................ 251.000.00-----------------------------------------1.00----
......................................................................................CTGCCTCAGCCTCCCGAGTAGCTGGGATCCG..................................................................................................................................... 311.000.00---1.00------------------------------------------
...........................GTGCAGTGGTGCGATCTTGGGAAC....................................................................................................................................................................................................... 241.000.00-----------------------1.00----------------------
..................................................................................................CCCGAGTAGCTGGGATTACACGT................................................................................................................................. 231.000.00---------------------------------1.00------------
.....................................................GCAACCTCTGCCTCCCGAGTGGGG............................................................................................................................................................................. 241.000.00--1.00-------------------------------------------
.....................................................GCAACCTCTGCCTCCCGAGTGTGC............................................................................................................................................................................. 241.000.00--1.00-------------------------------------------
...............................................................................AATTCTTCTGCCTCAGCCTCCCTGT.................................................................................................................................................. 251.000.00------------------1.00---------------------------
...............................................................................AATTCTTCTGCCTCAGCCCTG...................................................................................................................................................... 211.000.00-------------------------------------1.00--------
......................................................CAACCTCTGCCTCCCGAGTGAGG............................................................................................................................................................................. 231.000.00--1.00-------------------------------------------
..........................................................................CAACCAATTCTTCTGGAC.............................................................................................................................................................. 181.000.00----------------------------------------1.00-----
...........................................................TCTGCCTCCCGAGTTCAAAATA......................................................................................................................................................................... 221.000.00-------------------------1.00--------------------
........................................................ACCTCTGCCTCCCGAGTCC............................................................................................................................................................................... 191.000.00--1.00-------------------------------------------
....................................................TGCAACCTCTGCCTCCCGAGTTTGAG............................................................................................................................................................................ 261.000.00---1.00------------------------------------------
....................................................................................TTCTGCCTCAGCCTCCCGAA.................................................................................................................................................. 201.000.00-----------------------------------1.00----------
.....................................................................................................................................................................................................TAGTAGAGACGGGATTTCGG................................. 201.000.00------------------------------------------1.00---